=>> Building biology/wfa2-lib build started at Wed Feb 18 03:12:41 EST 2026 port directory: /usr/ports/biology/wfa2-lib package name: wfa2-lib-2.3.5 building for: FreeBSD pkg.DaveG.ca 15.0-RELEASE-p3 FreeBSD 15.0-RELEASE-p3 1500068 amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 466 Aug 27 2024 /usr/ports/biology/wfa2-lib/Makefile Ports top last git commit: eac71dbf758c Ports top unclean checkout: no Port dir last git commit: a7320981d5d4 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1500068 Job Id: 11 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500068 UNAME_v=FreeBSD 15.0-RELEASE-p3 1500068 UNAME_r=15.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/11/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_15_0_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work/.cache HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/wfa2-lib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/wfa2-lib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work/.cache HOME=/wrkdirs/usr/ports/biology/wfa2-lib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/wfa2-lib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/wfa2-lib/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/wfa2-lib/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/wfa2-lib" EXAMPLESDIR="share/examples/wfa2-lib" DATADIR="share/wfa2-lib" WWWDIR="www/wfa2-lib" ETCDIR="etc/wfa2-lib" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/wfa2-lib DOCSDIR=/usr/local/share/doc/wfa2-lib EXAMPLESDIR=/usr/local/share/examples/wfa2-lib WWWDIR=/usr/local/www/wfa2-lib ETCDIR=/usr/local/etc/wfa2-lib --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> wfa2-lib-2.3.5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.5.1.pkg [pkg.DaveG.ca] Installing pkg-2.5.1... [pkg.DaveG.ca] Extracting pkg-2.5.1: .......... done ===> wfa2-lib-2.3.5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of wfa2-lib-2.3.5 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by wfa2-lib-2.3.5 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by wfa2-lib-2.3.5 for building => SHA256 Checksum OK for smarco-WFA2-lib-v2.3.5_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by wfa2-lib-2.3.5 for building ===> Extracting for wfa2-lib-2.3.5 => SHA256 Checksum OK for smarco-WFA2-lib-v2.3.5_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for wfa2-lib-2.3.5 ===> Applying FreeBSD patches for wfa2-lib-2.3.5 from /usr/ports/biology/wfa2-lib/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> wfa2-lib-2.3.5 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.10_1.pkg [pkg.DaveG.ca] Installing cmake-core-3.31.10_1... [pkg.DaveG.ca] `-- Installing expat-2.7.4... [pkg.DaveG.ca] `-- Extracting expat-2.7.4: .......... done [pkg.DaveG.ca] `-- Installing jsoncpp-1.9.6_1... [pkg.DaveG.ca] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg.DaveG.ca] `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | `-- Installing libunistring-1.4.1... [pkg.DaveG.ca] | `-- Extracting libunistring-1.4.1: .......... done [pkg.DaveG.ca] `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] `-- Installing libuv-1.52.0... [pkg.DaveG.ca] `-- Extracting libuv-1.52.0: .......... done [pkg.DaveG.ca] `-- Installing rhash-1.4.6... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] `-- Extracting rhash-1.4.6: .......... done [pkg.DaveG.ca] Extracting cmake-core-3.31.10_1: .......... done ===> wfa2-lib-2.3.5 depends on file: /usr/local/bin/cmake - found ===> Returning to build of wfa2-lib-2.3.5 ===> wfa2-lib-2.3.5 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.13.2,4.pkg [pkg.DaveG.ca] Installing ninja-1.13.2,4... [pkg.DaveG.ca] `-- Installing python311-3.11.14_2... [pkg.DaveG.ca] | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | `-- Installing readline-8.3.3... [pkg.DaveG.ca] | `-- Extracting readline-8.3.3: .......... done [pkg.DaveG.ca] `-- Extracting python311-3.11.14_2: .......... done [pkg.DaveG.ca] Extracting ninja-1.13.2,4: ..... done ===== Message from python311-3.11.14_2: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> wfa2-lib-2.3.5 depends on executable: ninja - found ===> Returning to build of wfa2-lib-2.3.5 ===> wfa2-lib-2.3.5 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-2.4.3,1.pkg [pkg.DaveG.ca] Installing pkgconf-2.4.3,1... [pkg.DaveG.ca] Extracting pkgconf-2.4.3,1: .......... done ===> wfa2-lib-2.3.5 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of wfa2-lib-2.3.5 ===> wfa2-lib-2.3.5 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> wfa2-lib-2.3.5 depends on file: /usr/local/bin/ccache - found ===> Returning to build of wfa2-lib-2.3.5 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for wfa2-lib-2.3.5 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/wfa2-lib/work/.build -- The C compiler identification is Clang 19.1.7 -- The CXX compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/local/bin/pkgconf (found version "2.4.3") -- -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Configuring done (5.8s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_COLOR_MAKEFILE CMAKE_MODULE_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /wrkdirs/usr/ports/biology/wfa2-lib/work/.build =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for wfa2-lib-2.3.5 [ 0% 64/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_align.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_align.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_align.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_align.c [ 1% 65/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_aligner.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_aligner.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_aligner.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_aligner.c [ 2% 66/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_attributes.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_attributes.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_attributes.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_attributes.c [ 3% 67/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_buffer.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_buffer.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_buffer.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_backtrace_buffer.c [ 4% 68/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_offload.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_offload.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_offload.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_backtrace_offload.c [ 4% 69/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_bialigner.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_bialigner.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_bialigner.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialigner.c [ 5% 70/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront.c [ 6% 71/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_components.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_components.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_components.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_components.c [ 7% 72/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute_affine.c [ 8% 73/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute.c [ 8% 74/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute_linear.c [ 9% 75/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_debug.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_debug.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_debug.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_debug.c [ 10% 76/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_display.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_display.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_display.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_display.c [ 11% 77/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_extend.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_extend.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_extend.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_extend.c [ 12% 78/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_penalties.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_penalties.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_penalties.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_penalties.c [ 12% 79/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_sequences.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_sequences.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_sequences.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_sequences.c [ 13% 80/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_slab.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_slab.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_slab.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_slab.c [ 14% 81/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_termination.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_termination.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_termination.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_termination.c [ 15% 82/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels_avx.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels_avx.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels_avx.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_extend_kernels_avx.c [ 16% 83/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/dna_text.c.o -MF CMakeFiles/wfa2.dir/utils/dna_text.c.o.d -o CMakeFiles/wfa2.dir/utils/dna_text.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/dna_text.c [ 16% 84/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_backtrace.c [ 17% 85/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine2p.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine2p.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine2p.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute_affine2p.c [ 18% 86/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute_edit.c [ 19% 87/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_heuristic.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_heuristic.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_heuristic.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:176:5: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 176 | int wf_compute_distance_end2end( | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:193:5: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 193 | int wf_compute_distance_end2end_weighted( | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:212:5: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 212 | int wf_compute_distance_endsfree( | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:257:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 257 | void wavefront_heuristic_wfadaptive( | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:257:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:297:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 297 | void wf_heuristic_compute_sw_scores( | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:329:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 329 | void wavefront_heuristic_xdrop( | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:400:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 400 | bool wavefront_heuristic_zdrop( | ^ 8 warnings generated. [ 20% 88/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_pcigar.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_pcigar.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_pcigar.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_pcigar.c [ 20% 89/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_plot.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_plot.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_plot.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_plot.c [ 21% 90/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_unialign.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_unialign.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_unialign.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_unialign.c [ 22% 91/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_extend_kernels.c [ 23% 92/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/system/mm_stack.c.o -MF CMakeFiles/wfa2.dir/system/mm_stack.c.o.d -o CMakeFiles/wfa2.dir/system/mm_stack.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/mm_stack.c [ 24% 93/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/system/mm_allocator.c.o -MF CMakeFiles/wfa2.dir/system/mm_allocator.c.o.d -o CMakeFiles/wfa2.dir/system/mm_allocator.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/mm_allocator.c [ 25% 94/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/system/profiler_counter.c.o -MF CMakeFiles/wfa2.dir/system/profiler_counter.c.o.d -o CMakeFiles/wfa2.dir/system/profiler_counter.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/profiler_counter.c [ 25% 95/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/system/profiler_timer.c.o -MF CMakeFiles/wfa2.dir/system/profiler_timer.c.o.d -o CMakeFiles/wfa2.dir/system/profiler_timer.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/profiler_timer.c [ 26% 96/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/bitmap.c.o -MF CMakeFiles/wfa2.dir/utils/bitmap.c.o.d -o CMakeFiles/wfa2.dir/utils/bitmap.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/bitmap.c [ 27% 97/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/sequence_buffer.c.o -MF CMakeFiles/wfa2.dir/utils/sequence_buffer.c.o.d -o CMakeFiles/wfa2.dir/utils/sequence_buffer.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/sequence_buffer.c [ 28% 98/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/vector.c.o -MF CMakeFiles/wfa2.dir/utils/vector.c.o.d -o CMakeFiles/wfa2.dir/utils/vector.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/vector.c [ 29% 99/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/commons.c.o -MF CMakeFiles/wfa2.dir/utils/commons.c.o.d -o CMakeFiles/wfa2.dir/utils/commons.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/commons.c [ 29% 100/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/utils/heatmap.c.o -MF CMakeFiles/wfa2.dir/utils/heatmap.c.o.d -o CMakeFiles/wfa2.dir/utils/heatmap.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/heatmap.c [ 30% 101/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/alignment/affine2p_penalties.c.o -MF CMakeFiles/wfa2.dir/alignment/affine2p_penalties.c.o.d -o CMakeFiles/wfa2.dir/alignment/affine2p_penalties.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/affine2p_penalties.c [ 31% 102/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/alignment/affine_penalties.c.o -MF CMakeFiles/wfa2.dir/alignment/affine_penalties.c.o.d -o CMakeFiles/wfa2.dir/alignment/affine_penalties.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/affine_penalties.c [ 32% 103/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/alignment/score_matrix.c.o -MF CMakeFiles/wfa2.dir/alignment/score_matrix.c.o.d -o CMakeFiles/wfa2.dir/alignment/score_matrix.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/score_matrix.c [ 33% 104/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_align.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_align.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_align.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_align.c [ 33% 105/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_aligner.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_aligner.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_aligner.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_aligner.c [ 34% 106/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_attributes.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_attributes.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_attributes.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_attributes.c [ 35% 107/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_offload.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_offload.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_offload.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_backtrace_offload.c [ 36% 108/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialigner.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialigner.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialigner.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialigner.c [ 37% 109/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront.c [ 37% 110/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute_affine.c [ 38% 111/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_linear.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_linear.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_linear.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute_linear.c [ 39% 112/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_extend.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_extend.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_extend.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_extend.c [ 40% 113/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_plot.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_plot.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_plot.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_plot.c [ 41% 114/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_bialign.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_bialign.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_bialign.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialign.c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialign.c:676:23: warning: implicit conversion from enumeration type 'affine_matrix_type' to different enumeration type 'affine2p_matrix_type' [-Wenum-conversion] 674 | const int align_status = wavefront_bialign_find_breakpoint(wf_aligner->bialigner, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 | wf_aligner->penalties.distance_metric,&wf_aligner->alignment_form, 676 | affine_matrix_M,affine_matrix_M,&breakpoint,0); | ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialign.c:676:7: warning: implicit conversion from enumeration type 'affine_matrix_type' to different enumeration type 'affine2p_matrix_type' [-Wenum-conversion] 674 | const int align_status = wavefront_bialign_find_breakpoint(wf_aligner->bialigner, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 | wf_aligner->penalties.distance_metric,&wf_aligner->alignment_form, 676 | affine_matrix_M,affine_matrix_M,&breakpoint,0); | ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialign.c:719:25: warning: implicit conversion from enumeration type 'affine_matrix_type' to different enumeration type 'affine2p_matrix_type' [-Wenum-conversion] 717 | align_status = wavefront_bialign_alignment(wf_aligner, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 | &wf_aligner->alignment_form, 719 | affine_matrix_M,affine_matrix_M, | ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialign.c:719:9: warning: implicit conversion from enumeration type 'affine_matrix_type' to different enumeration type 'affine2p_matrix_type' [-Wenum-conversion] 717 | align_status = wavefront_bialign_alignment(wf_aligner, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 | &wf_aligner->alignment_form, 719 | affine_matrix_M,affine_matrix_M, | ^~~~~~~~~~~~~~~ 4 warnings generated. [ 41% 115/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_backtrace_buffer.c [ 42% 116/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_backtrace.c [ 43% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_components.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_components.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_components.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_components.c [ 44% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine2p.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine2p.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine2p.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute_affine2p.c [ 45% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute.c [ 45% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_debug.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_debug.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_debug.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_debug.c [ 46% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_display.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_display.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_display.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_display.c [ 47% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_pcigar.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_pcigar.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_pcigar.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_pcigar.c [ 48% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_penalties.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_penalties.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_penalties.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_penalties.c [ 49% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_sequences.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_sequences.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_sequences.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_sequences.c [ 50% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_slab.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_slab.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_slab.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_slab.c [ 50% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_unialign.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_unialign.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_unialign.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_unialign.c [ 51% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_termination.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_termination.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_termination.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_termination.c [ 52% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_extend_kernels_avx.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_extend_kernels_avx.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_extend_kernels_avx.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_extend_kernels_avx.c [ 53% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_extend_kernels.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_extend_kernels.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_extend_kernels.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_extend_kernels.c [ 54% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/system/mm_stack.c.o -MF CMakeFiles/wfa2_static.dir/system/mm_stack.c.o.d -o CMakeFiles/wfa2_static.dir/system/mm_stack.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/mm_stack.c [ 54% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/system/profiler_timer.c.o -MF CMakeFiles/wfa2_static.dir/system/profiler_timer.c.o.d -o CMakeFiles/wfa2_static.dir/system/profiler_timer.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/profiler_timer.c [ 55% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/utils/bitmap.c.o -MF CMakeFiles/wfa2_static.dir/utils/bitmap.c.o.d -o CMakeFiles/wfa2_static.dir/utils/bitmap.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/bitmap.c [ 56% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/utils/dna_text.c.o -MF CMakeFiles/wfa2_static.dir/utils/dna_text.c.o.d -o CMakeFiles/wfa2_static.dir/utils/dna_text.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/dna_text.c [ 57% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/utils/sequence_buffer.c.o -MF CMakeFiles/wfa2_static.dir/utils/sequence_buffer.c.o.d -o CMakeFiles/wfa2_static.dir/utils/sequence_buffer.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/sequence_buffer.c [ 58% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/utils/vector.c.o -MF CMakeFiles/wfa2_static.dir/utils/vector.c.o.d -o CMakeFiles/wfa2_static.dir/utils/vector.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/vector.c [ 58% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/alignment/affine2p_penalties.c.o -MF CMakeFiles/wfa2_static.dir/alignment/affine2p_penalties.c.o.d -o CMakeFiles/wfa2_static.dir/alignment/affine2p_penalties.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/affine2p_penalties.c [ 59% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/alignment/affine_penalties.c.o -MF CMakeFiles/wfa2_static.dir/alignment/affine_penalties.c.o.d -o CMakeFiles/wfa2_static.dir/alignment/affine_penalties.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/affine_penalties.c [ 60% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialign.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialign.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialign.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialign.c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialign.c:676:23: warning: implicit conversion from enumeration type 'affine_matrix_type' to different enumeration type 'affine2p_matrix_type' [-Wenum-conversion] 674 | const int align_status = wavefront_bialign_find_breakpoint(wf_aligner->bialigner, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 | wf_aligner->penalties.distance_metric,&wf_aligner->alignment_form, 676 | affine_matrix_M,affine_matrix_M,&breakpoint,0); | ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialign.c:676:7: warning: implicit conversion from enumeration type 'affine_matrix_type' to different enumeration type 'affine2p_matrix_type' [-Wenum-conversion] 674 | const int align_status = wavefront_bialign_find_breakpoint(wf_aligner->bialigner, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 | wf_aligner->penalties.distance_metric,&wf_aligner->alignment_form, 676 | affine_matrix_M,affine_matrix_M,&breakpoint,0); | ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialign.c:719:25: warning: implicit conversion from enumeration type 'affine_matrix_type' to different enumeration type 'affine2p_matrix_type' [-Wenum-conversion] 717 | align_status = wavefront_bialign_alignment(wf_aligner, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 | &wf_aligner->alignment_form, 719 | affine_matrix_M,affine_matrix_M, | ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_bialign.c:719:9: warning: implicit conversion from enumeration type 'affine_matrix_type' to different enumeration type 'affine2p_matrix_type' [-Wenum-conversion] 717 | align_status = wavefront_bialign_alignment(wf_aligner, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 | &wf_aligner->alignment_form, 719 | affine_matrix_M,affine_matrix_M, | ^~~~~~~~~~~~~~~ 4 warnings generated. [ 61% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_heuristic.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_heuristic.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_heuristic.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:176:5: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 176 | int wf_compute_distance_end2end( | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:193:5: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 193 | int wf_compute_distance_end2end_weighted( | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:212:5: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 212 | int wf_compute_distance_endsfree( | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:257:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 257 | void wavefront_heuristic_wfadaptive( | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:257:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:297:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 297 | void wf_heuristic_compute_sw_scores( | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:329:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 329 | void wavefront_heuristic_xdrop( | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_heuristic.c:400:6: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 400 | bool wavefront_heuristic_zdrop( | ^ 8 warnings generated. [ 62% 117/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/alignment/cigar.c.o -MF CMakeFiles/wfa2.dir/alignment/cigar.c.o.d -o CMakeFiles/wfa2.dir/alignment/cigar.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:50:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 50 | ['M'] = SAM_CIGAR_MATCH, | ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:38:26: note: expanded from macro 'SAM_CIGAR_MATCH' 38 | #define SAM_CIGAR_MATCH 0 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:51:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 51 | ['I'] = SAM_CIGAR_INS, | ^~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:39:26: note: expanded from macro 'SAM_CIGAR_INS' 39 | #define SAM_CIGAR_INS 1 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:52:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 52 | ['D'] = SAM_CIGAR_DEL, | ^~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:40:26: note: expanded from macro 'SAM_CIGAR_DEL' 40 | #define SAM_CIGAR_DEL 2 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:53:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 53 | ['N'] = SAM_CIGAR_N_SKIP, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:41:26: note: expanded from macro 'SAM_CIGAR_N_SKIP' 41 | #define SAM_CIGAR_N_SKIP 3 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:54:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 54 | ['='] = SAM_CIGAR_EQ, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:42:26: note: expanded from macro 'SAM_CIGAR_EQ' 42 | #define SAM_CIGAR_EQ 7 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:55:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 55 | ['X'] = SAM_CIGAR_X, | ^~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:43:26: note: expanded from macro 'SAM_CIGAR_X' 43 | #define SAM_CIGAR_X 8 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ 6 warnings generated. [ 62% 118/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/alignment/score_matrix.c.o -MF CMakeFiles/wfa2_static.dir/alignment/score_matrix.c.o.d -o CMakeFiles/wfa2_static.dir/alignment/score_matrix.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/score_matrix.c [ 63% 118/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/utils/commons.c.o -MF CMakeFiles/wfa2_static.dir/utils/commons.c.o.d -o CMakeFiles/wfa2_static.dir/utils/commons.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/commons.c [ 64% 118/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/system/mm_allocator.c.o -MF CMakeFiles/wfa2_static.dir/system/mm_allocator.c.o.d -o CMakeFiles/wfa2_static.dir/system/mm_allocator.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/mm_allocator.c [ 65% 118/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/system/profiler_counter.c.o -MF CMakeFiles/wfa2_static.dir/system/profiler_counter.c.o.d -o CMakeFiles/wfa2_static.dir/system/profiler_counter.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/profiler_counter.c [ 66% 118/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_edit.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_edit.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_edit.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/benchmark/benchmark_edit.c [ 66% 118/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_gap_linear.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_gap_linear.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_gap_linear.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/benchmark/benchmark_gap_linear.c [ 67% 118/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/alignment/affine2p_penalties.c.o -MF CMakeFiles/align_benchmark.dir/alignment/affine2p_penalties.c.o.d -o CMakeFiles/align_benchmark.dir/alignment/affine2p_penalties.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/affine2p_penalties.c [ 68% 118/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_edit.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_edit.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_edit.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront/wavefront_compute_edit.c [ 69% 118/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/utils/heatmap.c.o -MF CMakeFiles/wfa2_static.dir/utils/heatmap.c.o.d -o CMakeFiles/wfa2_static.dir/utils/heatmap.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/heatmap.c [ 70% 118/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_gap_affine2p.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_gap_affine2p.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_gap_affine2p.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/benchmark/benchmark_gap_affine2p.c [ 70% 118/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/utils/bitmap.c.o -MF CMakeFiles/align_benchmark.dir/utils/bitmap.c.o.d -o CMakeFiles/align_benchmark.dir/utils/bitmap.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/bitmap.c [ 71% 118/124] : && /usr/local/libexec/ccache/cc -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -Xlinker --dependency-file=CMakeFiles/wfa2.dir/link.d -shared -Wl,-soname,libwfa2.so.0 -o libwfa2.so.0 CMakeFiles/wfa2.dir/wavefront/wavefront_align.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_aligner.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_attributes.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_buffer.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_backtrace_offload.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_bialign.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_bialigner.c.o CMakeFiles/wfa2.dir/wavefront/wavefront.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_components.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine2p.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_affine.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_edit.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_compute_linear.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_debug.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_display.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_extend.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_heuristic.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_pcigar.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_penalties.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_plot.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_sequences.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_slab.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_unialign.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_termination.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels_avx.c.o CMakeFiles/wfa2.dir/wavefront/wavefront_extend_kernels.c.o CMakeFiles/wfa2.dir/system/mm_stack.c.o CMakeFiles/wfa2.dir/system/mm_allocator.c.o CMakeFiles/wfa2.dir/system/profiler_counter.c.o CMakeFiles/wfa2.dir/system/profiler_timer.c.o CMakeFiles/wfa2.dir/utils/bitmap.c.o CMakeFiles/wfa2.dir/utils/dna_text.c.o CMakeFiles/wfa2.dir/utils/sequence_buffer.c.o CMakeFiles/wfa2.dir/utils/vector.c.o CMakeFiles/wfa2.dir/utils/commons.c.o CMakeFiles/wfa2.dir/utils/heatmap.c.o CMakeFiles/wfa2.dir/alignment/affine2p_penalties.c.o CMakeFiles/wfa2.dir/alignment/affine_penalties.c.o CMakeFiles/wfa2.dir/alignment/cigar.c.o CMakeFiles/wfa2.dir/alignment/score_matrix.c.o && : [ 72% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/utils/commons.c.o -MF CMakeFiles/align_benchmark.dir/utils/commons.c.o.d -o CMakeFiles/align_benchmark.dir/utils/commons.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/commons.c [ 73% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/align_benchmark.c [ 74% 119/124] /usr/local/bin/cmake -E cmake_symlink_library libwfa2.so.0 libwfa2.so.0 libwfa2.so && : [ 75% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/utils/dna_text.c.o -MF CMakeFiles/align_benchmark.dir/utils/dna_text.c.o.d -o CMakeFiles/align_benchmark.dir/utils/dna_text.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/dna_text.c [ 75% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_check.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_check.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_check.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/benchmark/benchmark_check.c [ 76% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_gap_affine.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_gap_affine.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_gap_affine.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/benchmark/benchmark_gap_affine.c [ 77% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/system/profiler_timer.c.o -MF CMakeFiles/align_benchmark.dir/system/profiler_timer.c.o.d -o CMakeFiles/align_benchmark.dir/system/profiler_timer.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/profiler_timer.c [ 78% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark_params.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark_params.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark_params.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/align_benchmark_params.c [ 79% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/utils/vector.c.o -MF CMakeFiles/align_benchmark.dir/utils/vector.c.o.d -o CMakeFiles/align_benchmark.dir/utils/vector.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/vector.c [ 79% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_utils.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_utils.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_utils.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/benchmark/benchmark_utils.c [ 80% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/system/mm_stack.c.o -MF CMakeFiles/align_benchmark.dir/system/mm_stack.c.o.d -o CMakeFiles/align_benchmark.dir/system/mm_stack.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/mm_stack.c [ 81% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/alignment/affine_penalties.c.o -MF CMakeFiles/align_benchmark.dir/alignment/affine_penalties.c.o.d -o CMakeFiles/align_benchmark.dir/alignment/affine_penalties.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/affine_penalties.c [ 82% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_indel.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_indel.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_indel.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/benchmark/benchmark_indel.c [ 83% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_affine/affine_matrix.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_affine/affine_matrix.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_affine/affine_matrix.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/gap_affine/affine_matrix.c [ 83% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/utils/sequence_buffer.c.o -MF CMakeFiles/align_benchmark.dir/utils/sequence_buffer.c.o.d -o CMakeFiles/align_benchmark.dir/utils/sequence_buffer.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/sequence_buffer.c [ 84% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/system/profiler_counter.c.o -MF CMakeFiles/align_benchmark.dir/system/profiler_counter.c.o.d -o CMakeFiles/align_benchmark.dir/system/profiler_counter.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/profiler_counter.c [ 85% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/edit/edit_dp.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/edit/edit_dp.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/edit/edit_dp.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/edit/edit_dp.c [ 86% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_affine2p/affine2p_matrix.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_affine2p/affine2p_matrix.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_affine2p/affine2p_matrix.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/gap_affine2p/affine2p_matrix.c [ 87% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/utils/heatmap.c.o -MF CMakeFiles/align_benchmark.dir/utils/heatmap.c.o.d -o CMakeFiles/align_benchmark.dir/utils/heatmap.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils/heatmap.c [ 87% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_linear/nw.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_linear/nw.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_linear/nw.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/gap_linear/nw.c [ 88% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/indel/indel_dp.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/indel/indel_dp.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/indel/indel_dp.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/indel/indel_dp.c [ 89% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/alignment/score_matrix.c.o -MF CMakeFiles/align_benchmark.dir/alignment/score_matrix.c.o.d -o CMakeFiles/align_benchmark.dir/alignment/score_matrix.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/score_matrix.c [ 90% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_affine2p/affine2p_dp.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_affine2p/affine2p_dp.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_affine2p/affine2p_dp.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/gap_affine2p/affine2p_dp.c [ 91% 119/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/alignment/cigar.c.o -MF CMakeFiles/wfa2_static.dir/alignment/cigar.c.o.d -o CMakeFiles/wfa2_static.dir/alignment/cigar.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:50:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 50 | ['M'] = SAM_CIGAR_MATCH, | ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:38:26: note: expanded from macro 'SAM_CIGAR_MATCH' 38 | #define SAM_CIGAR_MATCH 0 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:51:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 51 | ['I'] = SAM_CIGAR_INS, | ^~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:39:26: note: expanded from macro 'SAM_CIGAR_INS' 39 | #define SAM_CIGAR_INS 1 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:52:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 52 | ['D'] = SAM_CIGAR_DEL, | ^~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:40:26: note: expanded from macro 'SAM_CIGAR_DEL' 40 | #define SAM_CIGAR_DEL 2 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:53:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 53 | ['N'] = SAM_CIGAR_N_SKIP, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:41:26: note: expanded from macro 'SAM_CIGAR_N_SKIP' 41 | #define SAM_CIGAR_N_SKIP 3 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:54:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 54 | ['='] = SAM_CIGAR_EQ, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:42:26: note: expanded from macro 'SAM_CIGAR_EQ' 42 | #define SAM_CIGAR_EQ 7 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:55:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 55 | ['X'] = SAM_CIGAR_X, | ^~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:43:26: note: expanded from macro 'SAM_CIGAR_X' 43 | #define SAM_CIGAR_X 8 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ 6 warnings generated. [ 91% 120/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/system/mm_allocator.c.o -MF CMakeFiles/align_benchmark.dir/system/mm_allocator.c.o.d -o CMakeFiles/align_benchmark.dir/system/mm_allocator.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system/mm_allocator.c [ 92% 120/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_affine/swg.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_affine/swg.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_affine/swg.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/gap_affine/swg.c [ 93% 120/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/tools/align_benchmark/edit/edit_bpm.c.o -MF CMakeFiles/align_benchmark.dir/tools/align_benchmark/edit/edit_bpm.c.o.d -o CMakeFiles/align_benchmark.dir/tools/align_benchmark/edit/edit_bpm.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/edit/edit_bpm.c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/edit/edit_bpm.c:304:24: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] 304 | } else if ((text[h]==pattern[v])) { | ~~~~~~~^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/edit/edit_bpm.c:304:24: note: remove extraneous parentheses around the comparison to silence this warning 304 | } else if ((text[h]==pattern[v])) { | ~ ^ ~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark/edit/edit_bpm.c:304:24: note: use '=' to turn this equality comparison into an assignment 304 | } else if ((text[h]==pattern[v])) { | ^~ | = 1 warning generated. [ 94% 120/124] : && /usr/local/bin/cmake -E rm -f libwfa2.a && /usr/bin/llvm-ar qc libwfa2.a CMakeFiles/wfa2_static.dir/wavefront/wavefront_align.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_aligner.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_attributes.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_offload.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialign.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialigner.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_components.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine2p.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_edit.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_linear.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_debug.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_display.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_extend.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_heuristic.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_pcigar.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_penalties.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_plot.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_sequences.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_slab.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_unialign.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_termination.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_extend_kernels_avx.c.o CMakeFiles/wfa2_static.dir/wavefront/wavefront_extend_kernels.c.o CMakeFiles/wfa2_static.dir/system/mm_stack.c.o CMakeFiles/wfa2_static.dir/system/mm_allocator.c.o CMakeFiles/wfa2_static.dir/system/profiler_counter.c.o CMakeFiles/wfa2_static.dir/system/profiler_timer.c.o CMakeFiles/wfa2_static.dir/utils/bitmap.c.o CMakeFiles/wfa2_static.dir/utils/dna_text.c.o CMakeFiles/wfa2_static.dir/utils/sequence_buffer.c.o CMakeFiles/wfa2_static.dir/utils/vector.c.o CMakeFiles/wfa2_static.dir/utils/commons.c.o CMakeFiles/wfa2_static.dir/utils/heatmap.c.o CMakeFiles/wfa2_static.dir/alignment/affine2p_penalties.c.o CMakeFiles/wfa2_static.dir/alignment/affine_penalties.c.o CMakeFiles/wfa2_static.dir/alignment/cigar.c.o CMakeFiles/wfa2_static.dir/alignment/score_matrix.c.o && /usr/bin/llvm-ranlib libwfa2.a && : [ 95% 120/124] /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/system -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/tools/align_benchmark -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -fPIE -MD -MT CMakeFiles/align_benchmark.dir/alignment/cigar.c.o -MF CMakeFiles/align_benchmark.dir/alignment/cigar.c.o.d -o CMakeFiles/align_benchmark.dir/alignment/cigar.c.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:50:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 50 | ['M'] = SAM_CIGAR_MATCH, | ^~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:38:26: note: expanded from macro 'SAM_CIGAR_MATCH' 38 | #define SAM_CIGAR_MATCH 0 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:51:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 51 | ['I'] = SAM_CIGAR_INS, | ^~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:39:26: note: expanded from macro 'SAM_CIGAR_INS' 39 | #define SAM_CIGAR_INS 1 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:52:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 52 | ['D'] = SAM_CIGAR_DEL, | ^~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:40:26: note: expanded from macro 'SAM_CIGAR_DEL' 40 | #define SAM_CIGAR_DEL 2 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:53:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 53 | ['N'] = SAM_CIGAR_N_SKIP, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:41:26: note: expanded from macro 'SAM_CIGAR_N_SKIP' 41 | #define SAM_CIGAR_N_SKIP 3 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:54:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 54 | ['='] = SAM_CIGAR_EQ, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:42:26: note: expanded from macro 'SAM_CIGAR_EQ' 42 | #define SAM_CIGAR_EQ 7 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:55:11: warning: initializer overrides prior initialization of this subobject [-Winitializer-overrides] 55 | ['X'] = SAM_CIGAR_X, | ^~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:43:26: note: expanded from macro 'SAM_CIGAR_X' 43 | #define SAM_CIGAR_X 8 | ^ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:49:17: note: previous initialization is here 49 | [0 ... 255] = SAM_CIGAR_NA, | ^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/alignment/cigar.c:45:25: note: expanded from macro 'SAM_CIGAR_NA' 45 | #define SAM_CIGAR_NA 15 | ^~ 6 warnings generated. [ 95% 121/124] : && /usr/local/libexec/ccache/cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -Xlinker --dependency-file=CMakeFiles/align_benchmark.dir/link.d CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark_params.c.o CMakeFiles/align_benchmark.dir/tools/align_benchmark/align_benchmark.c.o CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_check.c.o CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_edit.c.o CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_gap_affine2p.c.o CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_gap_affine.c.o CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_gap_linear.c.o CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_indel.c.o CMakeFiles/align_benchmark.dir/tools/align_benchmark/benchmark/benchmark_utils.c.o CMakeFiles/align_benchmark.dir/system/mm_allocator.c.o CMakeFiles/align_benchmark.dir/system/mm_stack.c.o CMakeFiles/align_benchmark.dir/system/profiler_counter.c.o CMakeFiles/align_benchmark.dir/system/profiler_timer.c.o CMakeFiles/align_benchmark.dir/utils/bitmap.c.o CMakeFiles/align_benchmark.dir/utils/commons.c.o CMakeFiles/align_benchmark.dir/utils/dna_text.c.o CMakeFiles/align_benchmark.dir/utils/heatmap.c.o CMakeFiles/align_benchmark.dir/utils/sequence_buffer.c.o CMakeFiles/align_benchmark.dir/utils/vector.c.o CMakeFiles/align_benchmark.dir/alignment/affine2p_penalties.c.o CMakeFiles/align_benchmark.dir/alignment/affine_penalties.c.o CMakeFiles/align_benchmark.dir/alignment/cigar.c.o CMakeFiles/align_benchmark.dir/alignment/score_matrix.c.o CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_affine/affine_matrix.c.o CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_affine/swg.c.o CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_linear/nw.c.o CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_affine2p/affine2p_dp.c.o CMakeFiles/align_benchmark.dir/tools/align_benchmark/gap_affine2p/affine2p_matrix.c.o CMakeFiles/align_benchmark.dir/tools/align_benchmark/edit/edit_bpm.c.o CMakeFiles/align_benchmark.dir/tools/align_benchmark/edit/edit_dp.c.o CMakeFiles/align_benchmark.dir/tools/align_benchmark/indel/indel_dp.c.o -o align_benchmark -Wl,-rpath,/wrkdirs/usr/ports/biology/wfa2-lib/work/.build -lm libwfa2.so.0 && : [ 96% 121/124] /usr/local/libexec/ccache/c++ -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2cpp_EXPORTS -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -MD -MT CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o -MF CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o.d -o CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/bindings/cpp/WFAligner.cpp [ 97% 122/124] /usr/local/libexec/ccache/c++ -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/. -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/wavefront -I/wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/utils -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -MD -MT CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o -MF CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o.d -o CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o -c /wrkdirs/usr/ports/biology/wfa2-lib/work/WFA2-lib-2.3.5/bindings/cpp/WFAligner.cpp [ 98% 123/124] : && /usr/local/libexec/ccache/c++ -fPIC -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -Xlinker --dependency-file=CMakeFiles/wfa2cpp.dir/link.d -shared -Wl,-soname,libwfa2cpp.so.0 -o libwfa2cpp.so.0 CMakeFiles/wfa2cpp.dir/bindings/cpp/WFAligner.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/biology/wfa2-lib/work/.build: libwfa2.so.0 && : [ 99% 124/124] /usr/local/bin/cmake -E cmake_symlink_library libwfa2cpp.so.0 libwfa2cpp.so.0 libwfa2cpp.so && : [100% 124/124] : && /usr/local/bin/cmake -E rm -f libwfa2cpp.a && /usr/bin/llvm-ar qc libwfa2cpp.a CMakeFiles/wfa2cpp_static.dir/bindings/cpp/WFAligner.cpp.o && /usr/bin/llvm-ranlib libwfa2cpp.a && : =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for wfa2-lib-2.3.5 ===> Generating temporary packing list [ 0% 1/1] cd /wrkdirs/usr/ports/biology/wfa2-lib/work/.build && /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/lib/libwfa2.a -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/lib/libwfa2.so.0 -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/lib/libwfa2.so -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_align.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_aligner.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_attributes.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_backtrace.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_backtrace_buffer.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_backtrace_offload.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_bialign.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_bialigner.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_components.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_compute.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_compute_affine.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_compute_affine2p.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_compute_edit.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_compute_linear.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_debug.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_display.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_extend.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_extend_kernels.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_extend_kernels_avx.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_heuristic.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_offset.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_pcigar.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_penalties.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_plot.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_sequences.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_slab.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_termination.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wavefront_unialign.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wfa.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/wavefront/wfa.hpp -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/utils/bitmap.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/utils/commons.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/utils/dna_text.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/utils/heatmap.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/utils/sequence_buffer.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/utils/vector.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/alignment/affine2p_penalties.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/alignment/affine_penalties.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/alignment/cigar.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/alignment/linear_penalties.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/alignment/score_matrix.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/system/mm_allocator.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/system/mm_stack.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/system/profiler_counter.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/system/profiler_timer.h -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/lib/libwfa2cpp.so.0 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/lib/libwfa2cpp.so.0" to "" -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/lib/libwfa2cpp.so -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/lib/libwfa2cpp.a -- Installing: /wrkdirs/usr/ports/biology/wfa2-lib/work/stage/usr/local/include/wfa2lib/bindings/cpp/WFAligner.hpp ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-02-18T08:12:41+0000' 'PKG_NOTE_ports_top_git_hash=eac71dbf758c' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=a7320981d5d4' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for wfa2-lib-2.3.5 ===> Building wfa2-lib-2.3.5 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for wfa2-lib-2.3.5 build of biology/wfa2-lib | wfa2-lib-2.3.5 ended at Wed Feb 18 03:13:05 EST 2026 build time: 00:00:24