=>> Building biology/spoa build started at Tue Nov 11 23:12:23 EST 2025 port directory: /usr/ports/biology/spoa package name: spoa-4.1.5 building for: FreeBSD pkg.DaveG.ca 15.0-ALPHA3 FreeBSD 15.0-ALPHA3 1500064 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1527 Nov 8 22:00 /usr/ports/biology/spoa/Makefile Ports top last git commit: ec159283c191 Ports top unclean checkout: no Port dir last git commit: a523863f0b86 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1500064 Job Id: 15 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500064 UNAME_v=FreeBSD 15.0-ALPHA3 1500064 UNAME_r=15.0-ALPHA3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/15/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_15_c_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/spoa/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/spoa/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/spoa/work/.cache HOME=/wrkdirs/usr/ports/biology/spoa/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/spoa/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/spoa/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/spoa/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/spoa/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/spoa/work/.cache HOME=/wrkdirs/usr/ports/biology/spoa/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/spoa/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/spoa/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/spoa/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lz -lcpu_features -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/spoa" EXAMPLESDIR="share/examples/spoa" DATADIR="share/spoa" WWWDIR="www/spoa" ETCDIR="etc/spoa" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/spoa DOCSDIR=/usr/local/share/doc/spoa EXAMPLESDIR=/usr/local/share/examples/spoa WWWDIR=/usr/local/www/spoa ETCDIR=/usr/local/etc/spoa --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> spoa-4.1.5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.4.2_1.pkg [pkg.DaveG.ca] Installing pkg-2.4.2_1... [pkg.DaveG.ca] Extracting pkg-2.4.2_1: .......... done ===> spoa-4.1.5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of spoa-4.1.5 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 => rvaser-spoa-4.1.5_GH0.tar.gz doesn't seem to exist in /portdistfiles. => Attempting to fetch https://codeload.github.com/rvaser/spoa/tar.gz/4.1.5?dummy=/rvaser-spoa-4.1.5_GH0.tar.gz fetch: https://codeload.github.com/rvaser/spoa/tar.gz/4.1.5?dummy=/rvaser-spoa-4.1.5_GH0.tar.gz: size unknown fetch: https://codeload.github.com/rvaser/spoa/tar.gz/4.1.5?dummy=/rvaser-spoa-4.1.5_GH0.tar.gz: size of remote file is not known rvaser-spoa-4.1.5_GH0.tar.gz 46 kB 406 kBps 00s ===> Fetching all distfiles required by spoa-4.1.5 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by spoa-4.1.5 for building => SHA256 Checksum OK for rvaser-spoa-4.1.5_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by spoa-4.1.5 for building ===> Extracting for spoa-4.1.5 => SHA256 Checksum OK for rvaser-spoa-4.1.5_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for spoa-4.1.5 ===> Applying FreeBSD patches for spoa-4.1.5 from /usr/ports/biology/spoa/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> spoa-4.1.5 depends on package: bioparser>0 - not found ===> Installing existing package /packages/All/bioparser-3.1.0.pkg [pkg.DaveG.ca] Installing bioparser-3.1.0... [pkg.DaveG.ca] `-- Installing biosoup-0.11.0_1... [pkg.DaveG.ca] `-- Extracting biosoup-0.11.0_1: ........ done [pkg.DaveG.ca] Extracting bioparser-3.1.0: ......... done ===> spoa-4.1.5 depends on package: bioparser>0 - found ===> Returning to build of spoa-4.1.5 ===> spoa-4.1.5 depends on package: biosoup>0 - found ===> spoa-4.1.5 depends on package: cereal>0 - not found ===> Installing existing package /packages/All/cereal-1.3.2_1.pkg [pkg.DaveG.ca] Installing cereal-1.3.2_1... [pkg.DaveG.ca] `-- Installing boost-libs-1.89.0_1... [pkg.DaveG.ca] | `-- Installing icu-76.1,1... [pkg.DaveG.ca] | `-- Extracting icu-76.1,1: .......... done [pkg.DaveG.ca] | `-- Installing zstd-1.5.7... [pkg.DaveG.ca] | | `-- Installing liblz4-1.10.0_2,1... [pkg.DaveG.ca] | | `-- Extracting liblz4-1.10.0_2,1: .......... done [pkg.DaveG.ca] | `-- Extracting zstd-1.5.7: .......... done [pkg.DaveG.ca] `-- Extracting boost-libs-1.89.0_1: .......... done [pkg.DaveG.ca] Extracting cereal-1.3.2_1: .......... done ===== Message from boost-libs-1.89.0_1: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> spoa-4.1.5 depends on package: cereal>0 - found ===> Returning to build of spoa-4.1.5 ===> spoa-4.1.5 depends on package: simde>0 - not found ===> Installing existing package /packages/All/simde-0.8.2.pkg [pkg.DaveG.ca] Installing simde-0.8.2... [pkg.DaveG.ca] Extracting simde-0.8.2: .......... done ===> spoa-4.1.5 depends on package: simde>0 - found ===> Returning to build of spoa-4.1.5 ===> spoa-4.1.5 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.9.pkg [pkg.DaveG.ca] Installing cmake-core-3.31.9... [pkg.DaveG.ca] `-- Installing expat-2.7.3... [pkg.DaveG.ca] `-- Extracting expat-2.7.3: .......... done [pkg.DaveG.ca] `-- Installing jsoncpp-1.9.6_1... [pkg.DaveG.ca] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg.DaveG.ca] `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | `-- Installing libunistring-1.4.1... [pkg.DaveG.ca] | `-- Extracting libunistring-1.4.1: .......... done [pkg.DaveG.ca] `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] `-- Installing libuv-1.51.0... [pkg.DaveG.ca] `-- Extracting libuv-1.51.0: .......... done [pkg.DaveG.ca] `-- Installing rhash-1.4.4_1... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.23.1... [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg.DaveG.ca] `-- Extracting rhash-1.4.4_1: .......... done [pkg.DaveG.ca] Extracting cmake-core-3.31.9: .......... done ===> spoa-4.1.5 depends on file: /usr/local/bin/cmake - found ===> Returning to build of spoa-4.1.5 ===> spoa-4.1.5 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.13.1,4.pkg [pkg.DaveG.ca] Installing ninja-1.13.1,4... [pkg.DaveG.ca] `-- Installing python311-3.11.14... [pkg.DaveG.ca] | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | `-- Installing readline-8.3.1... [pkg.DaveG.ca] | `-- Extracting readline-8.3.1: .......... done [pkg.DaveG.ca] `-- Extracting python311-3.11.14: .......... done [pkg.DaveG.ca] Extracting ninja-1.13.1,4: ..... done ===== Message from python311-3.11.14: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> spoa-4.1.5 depends on executable: ninja - found ===> Returning to build of spoa-4.1.5 ===> spoa-4.1.5 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> spoa-4.1.5 depends on file: /usr/local/bin/ccache - found ===> Returning to build of spoa-4.1.5 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> spoa-4.1.5 depends on shared library: libcpu_features.so - not found ===> Installing existing package /packages/All/cpu_features-0.9.0.pkg [pkg.DaveG.ca] Installing cpu_features-0.9.0... [pkg.DaveG.ca] Extracting cpu_features-0.9.0: .......... done ===> spoa-4.1.5 depends on shared library: libcpu_features.so - found (/usr/local/lib/libcpu_features.so) ===> Returning to build of spoa-4.1.5 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for spoa-4.1.5 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/spoa/work/.build -- The CXX compiler identification is Clang 19.1.7 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/local/share/cmake/Modules/FetchContent.cmake:1953 (message): Calling FetchContent_Populate(simde) is deprecated, call FetchContent_MakeAvailable(simde) instead. Policy CMP0169 can be set to OLD to allow FetchContent_Populate(simde) to be called directly for now, but the ability to call it with declared details will be removed completely in a future version. Call Stack (most recent call first): CMakeLists.txt:46 (FetchContent_Populate) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning at /usr/local/share/cmake/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency simde to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /wrkdirs/usr/ports/biology/spoa/work/.build/_deps/simde-src Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/local/share/cmake/Modules/FetchContent.cmake:1978:EVAL:1 (__FetchContent_Populate) /usr/local/share/cmake/Modules/FetchContent.cmake:1978 (cmake_language) CMakeLists.txt:46 (FetchContent_Populate) -- Configuring done (0.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_COLOR_MAKEFILE CMAKE_C_COMPILER CMAKE_C_FLAGS CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE THREADS_HAVE_PTHREAD_ARG spoa_build_executable spoa_optimize_for_native -- Build files have been written to: /wrkdirs/usr/ports/biology/spoa/work/.build =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for spoa-4.1.5 [ 8% 9/12] /usr/local/libexec/ccache/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_CEREAL -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/include -I/wrkdirs/usr/ports/biology/spoa/work/.build -I/wrkdirs/usr/ports/biology/spoa/work/.build/_deps/simde-src -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -Wall -Wextra -pedantic -fopenmp-simd -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/version.cpp.o -MF CMakeFiles/spoa.dir/src/version.cpp.o.d -o CMakeFiles/spoa.dir/src/version.cpp.o -c /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/version.cpp [ 16% 9/12] /usr/local/libexec/ccache/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_CEREAL -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/include -I/wrkdirs/usr/ports/biology/spoa/work/.build -I/wrkdirs/usr/ports/biology/spoa/work/.build/_deps/simde-src -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -Wall -Wextra -pedantic -fopenmp-simd -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -c /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/alignment_engine.cpp [ 25% 9/12] /usr/local/libexec/ccache/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_CEREAL -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -I/wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/include -I/wrkdirs/usr/ports/biology/spoa/work/.build -I/wrkdirs/usr/ports/biology/spoa/work/.build/_deps/simde-src -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -Wall -Wextra -pedantic -fopenmp-simd -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_exe.dir/src/main.cpp.o -MF CMakeFiles/spoa_exe.dir/src/main.cpp.o.d -o CMakeFiles/spoa_exe.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/main.cpp [ 33% 9/12] /usr/local/libexec/ccache/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_CEREAL -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/include -I/wrkdirs/usr/ports/biology/spoa/work/.build -I/wrkdirs/usr/ports/biology/spoa/work/.build/_deps/simde-src -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -Wall -Wextra -pedantic -fopenmp-simd -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -c /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/sisd_alignment_engine.cpp [ 41% 9/12] /usr/local/libexec/ccache/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -I/wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/include -I/wrkdirs/usr/ports/biology/spoa/work/.build/_deps/simde-src -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -Wall -Wextra -pedantic -fopenmp-simd -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -DNDEBUG -std=c++17 -fPIC -msse2 -MD -MT CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o -MF CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o.d -o CMakeFiles/spoa_sse2.dir/src/simd_alignment_engine_dispatch.cpp.o -c /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_dispatch.cpp [ 50% 9/12] /usr/local/libexec/ccache/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -I/wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/include -I/wrkdirs/usr/ports/biology/spoa/work/.build/_deps/simde-src -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -Wall -Wextra -pedantic -fopenmp-simd -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -DNDEBUG -std=c++17 -fPIC -mavx2 -MD -MT CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o -MF CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o.d -o CMakeFiles/spoa_avx2.dir/src/simd_alignment_engine_dispatch.cpp.o -c /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_dispatch.cpp In file included from /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_dispatch.cpp:3: /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:728:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 728 | Alignment SimdAlignmentEngine::Linear( | ^ /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:728:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1077:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 1077 | Alignment SimdAlignmentEngine::Affine( | ^ /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1077:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 1522 | Alignment SimdAlignmentEngine::Convex( | ^ /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:464:30: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 464 | void SimdAlignmentEngine::Initialize( | ^ /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:464:30: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:728:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 728 | Alignment SimdAlignmentEngine::Linear( | ^ /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:728:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:728:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:728:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:728:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1077:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 1077 | Alignment SimdAlignmentEngine::Affine( | ^ /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1077:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1077:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1077:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1077:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1077:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1077:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1077:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 1522 | Alignment SimdAlignmentEngine::Convex( | ^ /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:1522:35: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:84:22: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 84 | static inline void _mmxxx_prefix_max( | ^ /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:84:22: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:84:22: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:84:22: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:84:22: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_implementation.hpp:84:22: warning: loop not vectorized: the optimizer was unable to perform the requested transformation; the transformation might be disabled or specified as part of an unsupported transformation ordering [-Wpass-failed=transform-warning] 43 warnings generated. [ 58% 9/12] /usr/local/libexec/ccache/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_SIMDE -I/wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/include -I/wrkdirs/usr/ports/biology/spoa/work/.build/_deps/simde-src -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -Wall -Wextra -pedantic -fopenmp-simd -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -DNDEBUG -std=c++17 -fPIC -msse4.1 -MD -MT CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o -MF CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o.d -o CMakeFiles/spoa_sse4.1.dir/src/simd_alignment_engine_dispatch.cpp.o -c /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_dispatch.cpp [ 66% 9/12] /usr/local/libexec/ccache/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_CEREAL -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/include -I/wrkdirs/usr/ports/biology/spoa/work/.build -I/wrkdirs/usr/ports/biology/spoa/work/.build/_deps/simde-src -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -Wall -Wextra -pedantic -fopenmp-simd -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/graph.cpp.o -MF CMakeFiles/spoa.dir/src/graph.cpp.o.d -o CMakeFiles/spoa.dir/src/graph.cpp.o -c /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/graph.cpp [ 75% 9/12] /usr/local/libexec/ccache/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_GENERATE_DISPATCH -DSPOA_USE_CEREAL -DSPOA_USE_SIMDE -DSTACK_LINE_READER_BUFFER_SIZE=1024 -Dspoa_EXPORTS -I/wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/include -I/wrkdirs/usr/ports/biology/spoa/work/.build -I/wrkdirs/usr/ports/biology/spoa/work/.build/_deps/simde-src -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -Wall -Wextra -pedantic -fopenmp-simd -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -MF CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o.d -o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -c /wrkdirs/usr/ports/biology/spoa/work/spoa-4.1.5/src/simd_alignment_engine_dispatcher.cpp [ 83% 10/12] : && /usr/local/libexec/ccache/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -Wall -Wextra -pedantic -fopenmp-simd -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -DNDEBUG -lz -lcpu_features -L/usr/local/lib -Xlinker --dependency-file=CMakeFiles/spoa.dir/link.d -shared -Wl,-soname,libspoa.so.7.0.0 -o lib/libspoa.so.7.0.0 CMakeFiles/spoa.dir/src/alignment_engine.cpp.o CMakeFiles/spoa.dir/src/graph.cpp.o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o CMakeFiles/spoa.dir/src/version.cpp.o /usr/local/lib/libcpu_features.so && : [ 91% 11/12] /usr/local/bin/cmake -E cmake_symlink_library lib/libspoa.so.7.0.0 lib/libspoa.so.7.0.0 lib/libspoa.so && : [100% 12/12] : && /usr/local/libexec/ccache/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -Wall -Wextra -pedantic -fopenmp-simd -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/cpu_features -isystem /usr/local/include -DNDEBUG -lz -lcpu_features -L/usr/local/lib -Xlinker --dependency-file=CMakeFiles/spoa_exe.dir/link.d CMakeFiles/spoa_exe.dir/src/main.cpp.o -o bin/spoa -Wl,-rpath,/wrkdirs/usr/ports/biology/spoa/work/.build/lib: lib/libspoa.so.7.0.0 /usr/local/lib/libcpu_features.so /usr/lib/libz.so && : =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> spoa-4.1.5 depends on package: cereal>0 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for spoa-4.1.5 ===> Generating temporary packing list [ 0% 1/1] cd /wrkdirs/usr/ports/biology/spoa/work/.build && /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /wrkdirs/usr/ports/biology/spoa/work/stage/usr/local/lib/libspoa.so.7.0.0 -- Installing: /wrkdirs/usr/ports/biology/spoa/work/stage/usr/local/lib/libspoa.so -- Installing: /wrkdirs/usr/ports/biology/spoa/work/stage/usr/local/include/spoa -- Installing: /wrkdirs/usr/ports/biology/spoa/work/stage/usr/local/include/spoa/graph.hpp -- Installing: /wrkdirs/usr/ports/biology/spoa/work/stage/usr/local/include/spoa/version.hpp -- Installing: /wrkdirs/usr/ports/biology/spoa/work/stage/usr/local/include/spoa/spoa.hpp -- Installing: /wrkdirs/usr/ports/biology/spoa/work/stage/usr/local/include/spoa/alignment_engine.hpp -- Installing: /wrkdirs/usr/ports/biology/spoa/work/stage/usr/local/lib/cmake/spoa/spoaTargets.cmake -- Installing: /wrkdirs/usr/ports/biology/spoa/work/stage/usr/local/lib/cmake/spoa/spoaTargets-release.cmake -- Installing: /wrkdirs/usr/ports/biology/spoa/work/stage/usr/local/lib/cmake/spoa/spoaConfig.cmake -- Installing: /wrkdirs/usr/ports/biology/spoa/work/stage/usr/local/lib/cmake/spoa/spoaConfigVersion.cmake -- Installing: /wrkdirs/usr/ports/biology/spoa/work/stage/usr/local/bin/spoa -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/biology/spoa/work/stage/usr/local/bin/spoa" to "" ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-11-12T04:12:23+0000' 'PKG_NOTE_ports_top_git_hash=ec159283c191' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=a523863f0b86' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for spoa-4.1.5 ===> Building spoa-4.1.5 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for spoa-4.1.5 build of biology/spoa | spoa-4.1.5 ended at Tue Nov 11 23:12:42 EST 2025 build time: 00:00:19