=>> Building biology/seqwish build started at Fri Dec 12 15:54:26 EST 2025 port directory: /usr/ports/biology/seqwish package name: seqwish-0.7.11_2 building for: FreeBSD pkg.DaveG.ca 13.5-RELEASE-p7 FreeBSD 13.5-RELEASE-p7 1305000 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 856 Oct 28 16:11 /usr/ports/biology/seqwish/Makefile Ports top last git commit: 62d8b1999233 Ports top unclean checkout: no Port dir last git commit: 67ad101165aa Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1305000 Job Id: 12 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1305000 UNAME_v=FreeBSD 13.5-RELEASE-p7 1305000 UNAME_r=13.5-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/12/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_13_5_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for seqwish-0.7.11_2: OPENMP=on: Parallel processing support via OpenMP ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqwish/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqwish/work/.cache HOME=/wrkdirs/usr/ports/biology/seqwish/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqwish/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqwish/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=13.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seqwish" EXAMPLESDIR="share/examples/seqwish" DATADIR="share/seqwish" WWWDIR="www/seqwish" ETCDIR="etc/seqwish" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqwish DOCSDIR=/usr/local/share/doc/seqwish EXAMPLESDIR=/usr/local/share/examples/seqwish WWWDIR=/usr/local/www/seqwish ETCDIR=/usr/local/etc/seqwish --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seqwish-0.7.11_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.4.2_1.pkg [pkg.DaveG.ca] Installing pkg-2.4.2_1... [pkg.DaveG.ca] Extracting pkg-2.4.2_1: .......... done ===> seqwish-0.7.11_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of seqwish-0.7.11_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by seqwish-0.7.11_2 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by seqwish-0.7.11_2 for building => SHA256 Checksum OK for seqwish-v0.7.11.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by seqwish-0.7.11_2 for building ===> Extracting for seqwish-0.7.11_2 => SHA256 Checksum OK for seqwish-v0.7.11.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for seqwish-0.7.11_2 ===> Applying FreeBSD patches for seqwish-0.7.11_2 from /usr/ports/biology/seqwish/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seqwish-0.7.11_2 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.9.pkg [pkg.DaveG.ca] Installing cmake-core-3.31.9... [pkg.DaveG.ca] `-- Installing expat-2.7.3... [pkg.DaveG.ca] `-- Extracting expat-2.7.3: .......... done [pkg.DaveG.ca] `-- Installing jsoncpp-1.9.6_1... [pkg.DaveG.ca] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg.DaveG.ca] `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | `-- Installing libunistring-1.4.1... [pkg.DaveG.ca] | `-- Extracting libunistring-1.4.1: .......... done [pkg.DaveG.ca] `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] `-- Installing libuv-1.51.0... [pkg.DaveG.ca] `-- Extracting libuv-1.51.0: .......... done [pkg.DaveG.ca] `-- Installing rhash-1.4.4_2... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.23.1... [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg.DaveG.ca] `-- Extracting rhash-1.4.4_2: .......... done [pkg.DaveG.ca] Extracting cmake-core-3.31.9: .......... done ===> seqwish-0.7.11_2 depends on file: /usr/local/bin/cmake - found ===> Returning to build of seqwish-0.7.11_2 ===> seqwish-0.7.11_2 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-2.4.3,1.pkg [pkg.DaveG.ca] Installing pkgconf-2.4.3,1... [pkg.DaveG.ca] Extracting pkgconf-2.4.3,1: .......... done ===> seqwish-0.7.11_2 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of seqwish-0.7.11_2 ===> seqwish-0.7.11_2 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> seqwish-0.7.11_2 depends on file: /usr/local/bin/ccache - found ===> Returning to build of seqwish-0.7.11_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seqwish-0.7.11_2 depends on shared library: libsdsl.so - not found ===> Installing existing package /packages/All/sdsl-lite-2.3.1.v.20.pkg [pkg.DaveG.ca] Installing sdsl-lite-2.3.1.v.20... [pkg.DaveG.ca] Extracting sdsl-lite-2.3.1.v.20: .......... done ===> seqwish-0.7.11_2 depends on shared library: libsdsl.so - found (/usr/local/lib/libsdsl.so) ===> Returning to build of seqwish-0.7.11_2 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for seqwish-0.7.11_2 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/seqwish/work/.build CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is Clang 19.1.7 -- The CXX compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Found Threads: TRUE -- CMAKE_BUILD_TYPE: Release -- CMAKE_SYSTEM_NAME: FreeBSD -- Found PkgConfig: /usr/local/bin/pkgconf (found version "2.4.3") -- Checking for module 'sdsl-lite' -- Found sdsl-lite, version 2.3.1 -- Checking for module 'libdivsufsort' -- Found libdivsufsort, version 2.0.2 -- Checking for module 'libdivsufsort64' -- Found libdivsufsort64, version 2.0.2 -- Configuring done (5.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS FETCHCONTENT_FULLY_DISCONNECTED USE_OPENMP -- Build files have been written to: /wrkdirs/usr/ports/biology/seqwish/work/.build =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for seqwish-0.7.11_2 /usr/local/bin/cmake -S/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 -B/wrkdirs/usr/ports/biology/seqwish/work/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /wrkdirs/usr/ports/biology/seqwish/work/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- CMakeFiles/tayweeargs.dir/all --- --- CMakeFiles/gzipreader.dir/all --- --- CMakeFiles/mmmulti.dir/all --- --- CMakeFiles/iitii.dir/all --- --- CMakeFiles/ips4o.dir/all --- --- CMakeFiles/bbhash.dir/all --- --- CMakeFiles/atomicbitvector.dir/all --- --- CMakeFiles/atomicqueue.dir/all --- --- CMakeFiles/ska.dir/all --- --- CMakeFiles/paryfor.dir/all --- --- CMakeFiles/mio.dir/all --- --- CMakeFiles/tayweeargs.dir/all --- /usr/bin/make -f CMakeFiles/tayweeargs.dir/build.make CMakeFiles/tayweeargs.dir/depend --- CMakeFiles/gzipreader.dir/all --- /usr/bin/make -f CMakeFiles/gzipreader.dir/build.make CMakeFiles/gzipreader.dir/depend --- CMakeFiles/gzipreader.dir/depend --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/gzipreader.dir/DependInfo.cmake --- CMakeFiles/mmmulti.dir/all --- /usr/bin/make -f CMakeFiles/mmmulti.dir/build.make CMakeFiles/mmmulti.dir/depend --- CMakeFiles/mmmulti.dir/depend --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/mmmulti.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/mmmulti.dir/build.make CMakeFiles/mmmulti.dir/build --- mmmulti-prefix/src/mmmulti-stamp/mmmulti-mkdir --- [ 1%] Creating directories for 'mmmulti' --- CMakeFiles/iitii.dir/all --- /usr/bin/make -f CMakeFiles/iitii.dir/build.make CMakeFiles/iitii.dir/depend --- CMakeFiles/ips4o.dir/all --- /usr/bin/make -f CMakeFiles/ips4o.dir/build.make CMakeFiles/ips4o.dir/depend --- CMakeFiles/ips4o.dir/depend --- --- CMakeFiles/bbhash.dir/all --- /usr/bin/make -f CMakeFiles/bbhash.dir/build.make CMakeFiles/bbhash.dir/depend --- CMakeFiles/atomicbitvector.dir/all --- /usr/bin/make -f CMakeFiles/atomicbitvector.dir/build.make CMakeFiles/atomicbitvector.dir/depend --- CMakeFiles/atomicbitvector.dir/depend --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/atomicbitvector.dir/DependInfo.cmake --- CMakeFiles/atomicqueue.dir/all --- /usr/bin/make -f CMakeFiles/atomicqueue.dir/build.make CMakeFiles/atomicqueue.dir/depend --- CMakeFiles/ska.dir/all --- /usr/bin/make -f CMakeFiles/ska.dir/build.make CMakeFiles/ska.dir/depend --- CMakeFiles/ska.dir/depend --- --- CMakeFiles/ips4o.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/ips4o.dir/DependInfo.cmake --- CMakeFiles/gzipreader.dir/all --- /usr/bin/make -f CMakeFiles/gzipreader.dir/build.make CMakeFiles/gzipreader.dir/build --- gzipreader-prefix/src/gzipreader-stamp/gzipreader-mkdir --- --- CMakeFiles/mmmulti.dir/all --- /usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/tmp/mmmulti-mkdirs.cmake --- CMakeFiles/atomicbitvector.dir/all --- /usr/bin/make -f CMakeFiles/atomicbitvector.dir/build.make CMakeFiles/atomicbitvector.dir/build --- atomicbitvector-prefix/src/atomicbitvector-stamp/atomicbitvector-mkdir --- --- CMakeFiles/mio.dir/all --- /usr/bin/make -f CMakeFiles/mio.dir/build.make CMakeFiles/mio.dir/depend --- CMakeFiles/tayweeargs.dir/all --- --- CMakeFiles/tayweeargs.dir/depend --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/tayweeargs.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/tayweeargs.dir/build.make CMakeFiles/tayweeargs.dir/build --- tayweeargs-prefix/src/tayweeargs-stamp/tayweeargs-mkdir --- [ 3%] Creating directories for 'tayweeargs' /usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/tmp/tayweeargs-mkdirs.cmake /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-stamp/tayweeargs-mkdir --- CMakeFiles/iitii.dir/all --- --- CMakeFiles/iitii.dir/depend --- --- CMakeFiles/ips4o.dir/all --- /usr/bin/make -f CMakeFiles/ips4o.dir/build.make CMakeFiles/ips4o.dir/build --- CMakeFiles/bbhash.dir/all --- --- CMakeFiles/bbhash.dir/depend --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/bbhash.dir/DependInfo.cmake --- CMakeFiles/atomicbitvector.dir/all --- [ 2%] Creating directories for 'atomicbitvector' /usr/local/bin/cmake -Dcfgdir= -P /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/tmp/atomicbitvector-mkdirs.cmake --- CMakeFiles/atomicqueue.dir/all --- --- CMakeFiles/atomicqueue.dir/depend --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/atomicqueue.dir/DependInfo.cmake --- CMakeFiles/ska.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build 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[ 45%] No patch step for 'atomicbitvector' --- CMakeFiles/paryfor.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/paryfor && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-stamp/paryfor-update --- CMakeFiles/tayweeargs.dir/all --- --- tayweeargs-prefix/src/tayweeargs-stamp/tayweeargs-install --- --- CMakeFiles/gzipreader.dir/all --- CMake Warning (dev) in CMakeLists.txt: No project() command is present. 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Use -Wno-dev to suppress it. --- CMakeFiles/mmmulti.dir/all --- [ 44%] No build step for 'mmmulti' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/atomicbitvector.dir/all --- /usr/local/bin/cmake -E echo_append --- CMakeFiles/ska.dir/all --- --- ska-prefix/src/ska-stamp/ska-configure --- --- CMakeFiles/tayweeargs.dir/all --- [ 46%] No install step for 'tayweeargs' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/mmmulti.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-stamp/mmmulti-build --- CMakeFiles/atomicbitvector.dir/all --- /usr/local/bin/cmake -E touch 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CMakeFiles/atomicqueue.dir/all --- /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-stamp/atomicqueue-patch --- CMakeFiles/mio.dir/all --- --- mio-prefix/src/mio-stamp/mio-patch --- --- CMakeFiles/tayweeargs.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-stamp/tayweeargs-install --- CMakeFiles/bbhash.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-stamp/bbhash-configure --- CMakeFiles/ska.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-stamp/ska-configure --- CMakeFiles/paryfor.dir/all --- /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-stamp/paryfor-patch --- CMakeFiles/ips4o.dir/all --- [ 51%] No update step for 'ips4o' --- CMakeFiles/atomicbitvector.dir/all --- --- atomicbitvector-prefix/src/atomicbitvector-stamp/atomicbitvector-configure --- --- CMakeFiles/mmmulti.dir/all --- [ 52%] No install step for 'mmmulti' --- CMakeFiles/atomicbitvector.dir/all --- [ 52%] No configure step for 'atomicbitvector' --- CMakeFiles/tayweeargs.dir/all --- --- CMakeFiles/tayweeargs-complete --- --- CMakeFiles/atomicbitvector.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/mio.dir/all --- [ 50%] No patch step for 'mio' /usr/local/bin/cmake -E echo_append --- CMakeFiles/mmmulti.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/atomicqueue.dir/all --- --- atomicqueue-prefix/src/atomicqueue-stamp/atomicqueue-configure --- --- CMakeFiles/ips4o.dir/all --- /usr/local/bin/cmake -E echo_append --- CMakeFiles/bbhash.dir/all --- --- bbhash-prefix/src/bbhash-stamp/bbhash-build --- --- CMakeFiles/atomicqueue.dir/all --- [ 53%] No configure step for 'atomicqueue' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-stamp/atomicqueue-configure --- CMakeFiles/ska.dir/all --- --- ska-prefix/src/ska-stamp/ska-build --- --- CMakeFiles/tayweeargs.dir/all --- [ 54%] Completed 'tayweeargs' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles --- CMakeFiles/ips4o.dir/all --- /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-stamp/ips4o-update --- ips4o-prefix/src/ips4o-stamp/ips4o-patch --- --- CMakeFiles/mio.dir/all --- /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-patch --- CMakeFiles/mmmulti.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-stamp/mmmulti-install --- CMakeFiles/atomicqueue.dir/all --- --- atomicqueue-prefix/src/atomicqueue-stamp/atomicqueue-build --- --- CMakeFiles/bbhash.dir/all --- [ 57%] No build step for 'bbhash' --- CMakeFiles/atomicbitvector.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-stamp/atomicbitvector-configure --- CMakeFiles/paryfor.dir/all --- --- paryfor-prefix/src/paryfor-stamp/paryfor-configure --- [ 56%] No configure step for 'paryfor' --- CMakeFiles/tayweeargs.dir/all --- /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/tayweeargs-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/tayweeargs-prefix/src/tayweeargs-stamp/tayweeargs-done --- CMakeFiles/bbhash.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/iitii.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-stamp/iitii-configure --- CMakeFiles/atomicbitvector.dir/all --- --- atomicbitvector-prefix/src/atomicbitvector-stamp/atomicbitvector-build --- --- CMakeFiles/ska.dir/all --- [ 55%] No build step for 'ska' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-stamp/ska-build --- CMakeFiles/ips4o.dir/all --- [ 58%] No patch step for 'ips4o' --- CMakeFiles/bbhash.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-stamp/bbhash-build --- CMakeFiles/paryfor.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-stamp/paryfor-configure --- CMakeFiles/atomicbitvector.dir/all --- [ 59%] No build step for 'atomicbitvector' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/atomicqueue.dir/all --- [ 60%] No build step for 'atomicqueue' --- CMakeFiles/iitii.dir/all --- --- iitii-prefix/src/iitii-stamp/iitii-build --- --- CMakeFiles/ips4o.dir/all --- /usr/local/bin/cmake -E echo_append /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-stamp/ips4o-patch --- CMakeFiles/atomicbitvector.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-stamp/atomicbitvector-build --- CMakeFiles/mio.dir/all --- --- mio-prefix/src/mio-stamp/mio-configure --- --- CMakeFiles/iitii.dir/all --- [ 61%] No build step for 'iitii' --- CMakeFiles/ips4o.dir/all --- --- ips4o-prefix/src/ips4o-stamp/ips4o-configure --- --- CMakeFiles/bbhash.dir/all --- --- bbhash-prefix/src/bbhash-stamp/bbhash-install --- [ 63%] No install step for 'bbhash' --- CMakeFiles/atomicqueue.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/mio.dir/all --- [ 62%] No configure step for 'mio' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/iitii.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/tayweeargs.dir/all --- [ 63%] Built target tayweeargs --- CMakeFiles/atomicbitvector.dir/all --- --- atomicbitvector-prefix/src/atomicbitvector-stamp/atomicbitvector-install --- --- CMakeFiles/mmmulti.dir/all --- --- CMakeFiles/mmmulti-complete --- --- CMakeFiles/ska.dir/all --- --- ska-prefix/src/ska-stamp/ska-install --- --- CMakeFiles/paryfor.dir/all --- --- paryfor-prefix/src/paryfor-stamp/paryfor-build --- [ 65%] No build step for 'paryfor' --- CMakeFiles/iitii.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-stamp/iitii-build --- CMakeFiles/ips4o.dir/all --- [ 64%] No configure step for 'ips4o' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/paryfor.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-stamp/paryfor-build --- paryfor-prefix/src/paryfor-stamp/paryfor-install --- --- CMakeFiles/mio.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-configure --- CMakeFiles/bbhash.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/ips4o.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-stamp/ips4o-configure --- CMakeFiles/gzipreader.dir/all --- -- The C compiler identification is Clang 19.1.7 --- CMakeFiles/paryfor.dir/all --- [ 66%] No install step for 'paryfor' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/mio.dir/all --- --- mio-prefix/src/mio-stamp/mio-build --- --- CMakeFiles/bbhash.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-stamp/bbhash-install --- CMakeFiles/atomicqueue.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-stamp/atomicqueue-build --- atomicqueue-prefix/src/atomicqueue-stamp/atomicqueue-install --- --- CMakeFiles/ips4o.dir/all --- --- ips4o-prefix/src/ips4o-stamp/ips4o-build --- --- CMakeFiles/mmmulti.dir/all --- [ 69%] Completed 'mmmulti' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles --- CMakeFiles/iitii.dir/all --- --- iitii-prefix/src/iitii-stamp/iitii-install --- --- CMakeFiles/atomicbitvector.dir/all --- [ 68%] No install step for 'atomicbitvector' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/paryfor.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-stamp/paryfor-install --- CMakeFiles/mio.dir/all --- [ 70%] No build step for 'mio' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/iitii.dir/all --- [ 69%] No install step for 'iitii' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/bbhash.dir/all --- --- CMakeFiles/bbhash-complete --- --- CMakeFiles/ska.dir/all --- [ 67%] No install step for 'ska' --- CMakeFiles/mmmulti.dir/all --- /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/mmmulti-complete --- CMakeFiles/mio.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-build --- CMakeFiles/mmmulti.dir/all --- /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mmmulti-prefix/src/mmmulti-stamp/mmmulti-done --- CMakeFiles/iitii.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-stamp/iitii-install --- CMakeFiles/ips4o.dir/all --- [ 71%] No build step for 'ips4o' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/bbhash.dir/all --- [ 72%] Completed 'bbhash' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles --- CMakeFiles/atomicbitvector.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-stamp/atomicbitvector-install --- CMakeFiles/atomicbitvector-complete --- [ 72%] Completed 'atomicbitvector' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles --- CMakeFiles/ska.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/atomicqueue.dir/all --- [ 69%] No install step for 'atomicqueue' cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-build && /usr/local/bin/cmake -E echo_append --- CMakeFiles/paryfor.dir/all --- --- CMakeFiles/paryfor-complete --- --- CMakeFiles/ska.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ska-prefix/src/ska-stamp/ska-install --- CMakeFiles/mmmulti.dir/all --- [ 72%] Built target mmmulti --- CMakeFiles/iitii.dir/all --- --- CMakeFiles/iitii-complete --- --- CMakeFiles/atomicbitvector.dir/all --- /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/atomicbitvector-complete --- CMakeFiles/paryfor.dir/all --- [ 73%] Completed 'paryfor' --- CMakeFiles/mio.dir/all --- --- mio-prefix/src/mio-stamp/mio-install --- [ 75%] No install step for 'mio' --- CMakeFiles/iitii.dir/all --- [ 74%] Completed 'iitii' --- CMakeFiles/paryfor.dir/all --- /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/bbhash-complete /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/bbhash-prefix/src/bbhash-stamp/bbhash-done --- CMakeFiles/atomicbitvector.dir/all --- /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicbitvector-prefix/src/atomicbitvector-stamp/atomicbitvector-done --- CMakeFiles/atomicqueue.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/atomicqueue-prefix/src/atomicqueue-stamp/atomicqueue-install --- CMakeFiles/ska.dir/all --- --- CMakeFiles/ska-complete --- --- CMakeFiles/mio.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E echo_append cd /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/mio-prefix/src/mio-stamp/mio-install --- CMakeFiles/paryfor.dir/all --- /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/paryfor-complete --- CMakeFiles/iitii.dir/all --- /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles --- CMakeFiles/gzipreader.dir/all --- -- The CXX compiler identification is Clang 19.1.7 --- CMakeFiles/iitii.dir/all --- /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/iitii-complete --- CMakeFiles/ips4o.dir/all --- cd /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-build && /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/ips4o-prefix/src/ips4o-stamp/ips4o-build --- CMakeFiles/bbhash.dir/all --- [ 75%] Built target bbhash --- CMakeFiles/atomicqueue.dir/all --- --- CMakeFiles/atomicqueue-complete --- --- CMakeFiles/paryfor.dir/all --- /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/paryfor-prefix/src/paryfor-stamp/paryfor-done --- CMakeFiles/mio.dir/all --- --- CMakeFiles/mio-complete --- [ 76%] Completed 'mio' --- CMakeFiles/gzipreader.dir/all --- -- Detecting C compiler ABI info /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/iitii-prefix/src/iitii-stamp/iitii-done --- CMakeFiles/iitii.dir/all --- [ 77%] Built target iitii --- CMakeFiles/ips4o.dir/all --- --- ips4o-prefix/src/ips4o-stamp/ips4o-install --- --- CMakeFiles/ska.dir/all --- [ 76%] Completed 'ska' /usr/local/bin/cmake -E make_directory /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /usr/local/bin/cmake -E touch /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/ska-complete --- CMakeFiles/atomicbitvector.dir/all --- [ 76%] Built target atomicbitvector --- 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-pthread -MD -MT CMakeFiles/seqwish.dir/src/compact.cpp.o -MF CMakeFiles/seqwish.dir/src/compact.cpp.o.d -o CMakeFiles/seqwish.dir/src/compact.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/compact.cpp --- CMakeFiles/seqwish.dir/src/dna.cpp.o --- p -Ofast -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/dna.cpp.o -MF CMakeFiles/seqwish.dir/src/dna.cpp.o.d -o CMakeFiles/seqwish.dir/src/dna.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/dna.cpp --- CMakeFiles/seqwish.dir/src/gfa.cpp.o --- p -Ofast -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/gfa.cpp.o -MF CMakeFiles/seqwish.dir/src/gfa.cpp.o.d -o CMakeFiles/seqwish.dir/src/gfa.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/gfa.cpp --- CMakeFiles/seqwish.dir/src/vgp.cpp.o --- p -Ofast -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/vgp.cpp.o -MF CMakeFiles/seqwish.dir/src/vgp.cpp.o.d -o CMakeFiles/seqwish.dir/src/vgp.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/vgp.cpp --- CMakeFiles/seqwish.dir/src/exists.cpp.o --- p -Ofast -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/exists.cpp.o -MF CMakeFiles/seqwish.dir/src/exists.cpp.o.d -o CMakeFiles/seqwish.dir/src/exists.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/exists.cpp --- CMakeFiles/seqwish.dir/src/time.cpp.o --- p -Ofast -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/time.cpp.o -MF CMakeFiles/seqwish.dir/src/time.cpp.o.d -o CMakeFiles/seqwish.dir/src/time.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/time.cpp --- CMakeFiles/seqwish.dir/src/mmap.cpp.o --- p -Ofast -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/mmap.cpp.o -MF CMakeFiles/seqwish.dir/src/mmap.cpp.o.d -o CMakeFiles/seqwish.dir/src/mmap.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/mmap.cpp --- CMakeFiles/seqwish.dir/src/version.cpp.o --- [ 99%] Building CXX object CMakeFiles/seqwish.dir/src/version.cpp.o /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 -I/usr/local/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/args -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/gzip_reader -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/mmmulti/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/iitii/src -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/BBHash -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/atomicbitvector/include -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/atomic_queue/include/atomic_queue -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/flat_hash_map -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/paryfor -I/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/mmmulti/deps/mio/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp -Ofast -DNDEBUG -std=gnu++14 -pthread -MD -MT CMakeFiles/seqwish.dir/src/version.cpp.o -MF CMakeFiles/seqwish.dir/src/version.cpp.o.d -o CMakeFiles/seqwish.dir/src/version.cpp.o -c /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/version.cpp --- CMakeFiles/seqwish.dir/src/utils.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] --- CMakeFiles/seqwish.dir/src/pos.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] --- CMakeFiles/seqwish.dir/src/exists.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] --- CMakeFiles/seqwish.dir/src/sxs.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] --- CMakeFiles/seqwish.dir/src/mmap.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] --- CMakeFiles/seqwish.dir/src/time.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] --- CMakeFiles/seqwish.dir/src/cigar.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] --- CMakeFiles/seqwish.dir/src/tempfile.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] --- CMakeFiles/seqwish.dir/src/dna.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] --- CMakeFiles/seqwish.dir/src/paf.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] --- CMakeFiles/seqwish.dir/src/match.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] --- CMakeFiles/seqwish.dir/src/version.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] --- CMakeFiles/seqwish.dir/src/alignments.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/alignments.cpp:1: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/alignments.hpp:13: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/seqindex.hpp:11: In file included from /usr/local/include/sdsl/csa_wt.hpp:24: In file included from /usr/local/include/sdsl/wavelet_trees.hpp:34: In file included from /usr/local/include/sdsl/wt_gmr.hpp:27: In file included from /usr/local/include/sdsl/vectors.hpp:8: /usr/local/include/sdsl/dac_vector.hpp:202:21: warning: use of infinity is undefined behavior due to the currently enabled floating-point options [-Wnan-infinity-disabled] 202 | std::numeric_limits::infinity()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/alignments.cpp:16:34: warning: implicit conversion from 'type' (aka 'unsigned long') to 'float' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion] 16 | return match_hash(q, t, l) < std::numeric_limits::max() * f; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~ 2 warnings generated. --- CMakeFiles/seqwish.dir/src/vgp.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/vgp.cpp:1: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/vgp.hpp:7: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/seqindex.hpp:11: In file included from /usr/local/include/sdsl/csa_wt.hpp:24: In file included from /usr/local/include/sdsl/wavelet_trees.hpp:34: In file included from /usr/local/include/sdsl/wt_gmr.hpp:27: In file included from /usr/local/include/sdsl/vectors.hpp:8: /usr/local/include/sdsl/dac_vector.hpp:202:21: warning: use of infinity is undefined behavior due to the currently enabled floating-point options [-Wnan-infinity-disabled] 202 | std::numeric_limits::infinity()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. --- CMakeFiles/seqwish.dir/src/compact.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/compact.cpp:1: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/compact.hpp:6: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/seqindex.hpp:11: In file included from /usr/local/include/sdsl/csa_wt.hpp:24: In file included from /usr/local/include/sdsl/wavelet_trees.hpp:34: In file included from /usr/local/include/sdsl/wt_gmr.hpp:27: In file included from /usr/local/include/sdsl/vectors.hpp:8: /usr/local/include/sdsl/dac_vector.hpp:202:21: warning: use of infinity is undefined behavior due to the currently enabled floating-point options [-Wnan-infinity-disabled] 202 | std::numeric_limits::infinity()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. --- CMakeFiles/seqwish.dir/src/gfa.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/gfa.cpp:1: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/gfa.hpp:8: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/seqindex.hpp:11: In file included from /usr/local/include/sdsl/csa_wt.hpp:24: In file included from /usr/local/include/sdsl/wavelet_trees.hpp:34: In file included from /usr/local/include/sdsl/wt_gmr.hpp:27: In file included from /usr/local/include/sdsl/vectors.hpp:8: /usr/local/include/sdsl/dac_vector.hpp:202:21: warning: use of infinity is undefined behavior due to the currently enabled floating-point options [-Wnan-infinity-disabled] 202 | std::numeric_limits::infinity()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. --- CMakeFiles/seqwish.dir/src/seqindex.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/seqindex.cpp:1: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/seqindex.hpp:11: In file included from /usr/local/include/sdsl/csa_wt.hpp:24: In file included from /usr/local/include/sdsl/wavelet_trees.hpp:34: In file included from /usr/local/include/sdsl/wt_gmr.hpp:27: In file included from /usr/local/include/sdsl/vectors.hpp:8: /usr/local/include/sdsl/dac_vector.hpp:202:21: warning: use of infinity is undefined behavior due to the currently enabled floating-point options [-Wnan-infinity-disabled] 202 | std::numeric_limits::infinity()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. --- CMakeFiles/seqwish.dir/src/links.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/links.cpp:1: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/links.hpp:7: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/seqindex.hpp:11: In file included from /usr/local/include/sdsl/csa_wt.hpp:24: In file included from /usr/local/include/sdsl/wavelet_trees.hpp:34: In file included from /usr/local/include/sdsl/wt_gmr.hpp:27: In file included from /usr/local/include/sdsl/vectors.hpp:8: /usr/local/include/sdsl/dac_vector.hpp:202:21: warning: use of infinity is undefined behavior due to the currently enabled floating-point options [-Wnan-infinity-disabled] 202 | std::numeric_limits::infinity()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/links.cpp:1: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/links.hpp:8: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/mmmulti/src/mmmultiset.hpp:22: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o/ips4o.hpp:38: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o/ips4o/ips4o.hpp:45: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o/ips4o/memory.hpp:47: /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o/ips4o/bucket_pointers.hpp:106:28: warning: large atomic operation may incur significant performance penalty; the access size (16 bytes) exceeds the max lock-free size (8 bytes) [-Watomic-alignment] 106 | const auto p = __atomic_fetch_sub(&all_, | ^ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o/ips4o/bucket_pointers.hpp:86:28: warning: large atomic operation may incur significant performance penalty; the access size (16 bytes) exceeds the max lock-free size (8 bytes) [-Watomic-alignment] 86 | const auto p = __atomic_fetch_add(&all_, Cfg::kBlockSize, __ATOMIC_RELAXED); | ^ 3 warnings generated. --- CMakeFiles/seqwish.dir/src/main.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/main.cpp:11: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/seqindex.hpp:11: In file included from /usr/local/include/sdsl/csa_wt.hpp:24: In file included from /usr/local/include/sdsl/wavelet_trees.hpp:34: In file included from /usr/local/include/sdsl/wt_gmr.hpp:27: In file included from /usr/local/include/sdsl/vectors.hpp:8: /usr/local/include/sdsl/dac_vector.hpp:202:21: warning: use of infinity is undefined behavior due to the currently enabled floating-point options [-Wnan-infinity-disabled] 202 | std::numeric_limits::infinity()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/main.cpp:8: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/mmmulti/src/mmmultimap.hpp:22: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o/ips4o.hpp:38: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o/ips4o/ips4o.hpp:45: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o/ips4o/memory.hpp:47: /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o/ips4o/bucket_pointers.hpp:106:28: warning: large atomic operation may incur significant performance penalty; the access size (16 bytes) exceeds the max lock-free size (8 bytes) [-Watomic-alignment] 106 | const auto p = __atomic_fetch_sub(&all_, | ^ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o/ips4o/bucket_pointers.hpp:86:28: warning: large atomic operation may incur significant performance penalty; the access size (16 bytes) exceeds the max lock-free size (8 bytes) [-Watomic-alignment] 86 | const auto p = __atomic_fetch_add(&all_, Cfg::kBlockSize, __ATOMIC_RELAXED); | ^ 3 warnings generated. --- CMakeFiles/seqwish.dir/src/transclosure.cpp.o --- c++: warning: argument '-Ofast' is deprecated; use '-O3 -ffast-math' for the same behavior, or '-O3' to enable only conforming optimizations [-Wdeprecated-ofast] In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/transclosure.cpp:1: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/transclosure.hpp:12: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/seqindex.hpp:11: In file included from /usr/local/include/sdsl/csa_wt.hpp:24: In file included from /usr/local/include/sdsl/wavelet_trees.hpp:34: In file included from /usr/local/include/sdsl/wt_gmr.hpp:27: In file included from /usr/local/include/sdsl/vectors.hpp:8: /usr/local/include/sdsl/dac_vector.hpp:202:21: warning: use of infinity is undefined behavior due to the currently enabled floating-point options [-Wnan-infinity-disabled] 202 | std::numeric_limits::infinity()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/transclosure.cpp:1: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/src/transclosure.hpp:13: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/mmmulti/src/mmiitree.hpp:19: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o/ips4o.hpp:38: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o/ips4o/ips4o.hpp:45: In file included from /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o/ips4o/memory.hpp:47: /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o/ips4o/bucket_pointers.hpp:106:28: warning: large atomic operation may incur significant performance penalty; the access size (16 bytes) exceeds the max lock-free size (8 bytes) [-Watomic-alignment] 106 | const auto p = __atomic_fetch_sub(&all_, | ^ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o/ips4o/bucket_pointers.hpp:86:28: warning: large atomic operation may incur significant performance penalty; the access size (16 bytes) exceeds the max lock-free size (8 bytes) [-Watomic-alignment] 86 | const auto p = __atomic_fetch_add(&all_, Cfg::kBlockSize, __ATOMIC_RELAXED); | ^ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o/ips4o/bucket_pointers.hpp:106:28: warning: large atomic operation may incur significant performance penalty; the access size (16 bytes) exceeds the max lock-free size (8 bytes) [-Watomic-alignment] 106 | const auto p = __atomic_fetch_sub(&all_, | ^ /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/deps/ips4o/ips4o/bucket_pointers.hpp:86:28: warning: large atomic operation may incur significant performance penalty; the access size (16 bytes) exceeds the max lock-free size (8 bytes) [-Watomic-alignment] 86 | const auto p = __atomic_fetch_add(&all_, Cfg::kBlockSize, __ATOMIC_RELAXED); | ^ 5 warnings generated. --- /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/bin/seqwish --- [100%] Linking CXX executable /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11/bin/seqwish /usr/local/bin/cmake -E cmake_link_script CMakeFiles/seqwish.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fopenmp -Ofast -DNDEBUG -Xlinker --dependency-file=CMakeFiles/seqwish.dir/link.d CMakeFiles/seqwish.dir/src/utils.cpp.o CMakeFiles/seqwish.dir/src/tempfile.cpp.o CMakeFiles/seqwish.dir/src/main.cpp.o CMakeFiles/seqwish.dir/src/seqindex.cpp.o CMakeFiles/seqwish.dir/src/paf.cpp.o CMakeFiles/seqwish.dir/src/sxs.cpp.o CMakeFiles/seqwish.dir/src/cigar.cpp.o CMakeFiles/seqwish.dir/src/alignments.cpp.o CMakeFiles/seqwish.dir/src/pos.cpp.o CMakeFiles/seqwish.dir/src/match.cpp.o CMakeFiles/seqwish.dir/src/transclosure.cpp.o CMakeFiles/seqwish.dir/src/links.cpp.o CMakeFiles/seqwish.dir/src/compact.cpp.o 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Generating temporary packing list /usr/local/bin/cmake -S/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 -B/wrkdirs/usr/ports/biology/seqwish/work/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles /wrkdirs/usr/ports/biology/seqwish/work/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f CMakeFiles/tayweeargs.dir/build.make CMakeFiles/tayweeargs.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/tayweeargs.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/tayweeargs.dir/build.make 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/usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/ips4o.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/ips4o.dir/build.make CMakeFiles/ips4o.dir/build [ 37%] Built target ips4o /usr/bin/make -f CMakeFiles/bbhash.dir/build.make CMakeFiles/bbhash.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/bbhash.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/bbhash.dir/build.make 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/wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/atomicqueue.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/atomicqueue.dir/build.make CMakeFiles/atomicqueue.dir/build [ 59%] Built target atomicqueue /usr/bin/make -f CMakeFiles/ska.dir/build.make CMakeFiles/ska.dir/depend cd /wrkdirs/usr/ports/biology/seqwish/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/seqwish-v0.7.11 /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build /wrkdirs/usr/ports/biology/seqwish/work/.build/CMakeFiles/ska.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/ska.dir/build.make CMakeFiles/ska.dir/build [ 66%] Built target ska /usr/bin/make -f CMakeFiles/paryfor.dir/build.make 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-DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /wrkdirs/usr/ports/biology/seqwish/work/stage/usr/local/bin/seqwish -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/biology/seqwish/work/stage/usr/local/bin/seqwish" to "/usr/local/lib" ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-12-12T20:54:26+0000' 'PKG_NOTE_ports_top_git_hash=62d8b1999233' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=67ad101165aa' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for seqwish-0.7.11_2 ===> Building seqwish-0.7.11_2 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for seqwish-0.7.11_2 build of biology/seqwish | seqwish-0.7.11_2 ended at Fri Dec 12 15:55:44 EST 2025 build time: 00:01:19