=>> Building biology/seqan3 build started at Thu Mar 12 03:38:37 EDT 2026 port directory: /usr/ports/biology/seqan3 package name: seqan3-3.4.0 building for: FreeBSD pkg.DaveG.ca 14.4-RELEASE FreeBSD 14.4-RELEASE 1404000 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1246 Sep 22 04:12 /usr/ports/biology/seqan3/Makefile Ports top last git commit: 26b198eb3ee3 Ports top unclean checkout: no Port dir last git commit: 2bf6663f5380 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1404000 Job Id: 03 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1404000 UNAME_v=FreeBSD 14.4-RELEASE 1404000 UNAME_r=14.4-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/03/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_14_4_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan3/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan3/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqan3/work/.cache HOME=/wrkdirs/usr/ports/biology/seqan3/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqan3/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqan3/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan3/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan3/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/seqan3/work/.cache HOME=/wrkdirs/usr/ports/biology/seqan3/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/seqan3/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/seqan3/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/seqan3/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=14.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/seqan3" EXAMPLESDIR="share/examples/seqan3" DATADIR="share/seqan3" WWWDIR="www/seqan3" ETCDIR="etc/seqan3" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqan3 DOCSDIR=/usr/local/share/doc/seqan3 EXAMPLESDIR=/usr/local/share/examples/seqan3 WWWDIR=/usr/local/www/seqan3 ETCDIR=/usr/local/etc/seqan3 --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seqan3-3.4.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.6.2.pkg [pkg.DaveG.ca] Installing pkg-2.6.2... [pkg.DaveG.ca] Extracting pkg-2.6.2: .......... done ===> seqan3-3.4.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of seqan3-3.4.0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by seqan3-3.4.0 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by seqan3-3.4.0 for building => SHA256 Checksum OK for seqan3-3.4.0/CPM.cmake. => SHA256 Checksum OK for seqan3-3.4.0/seqan-seqan3-3.4.0_GH0.tar.gz. => SHA256 Checksum OK for seqan3-3.4.0/xxsds-sdsl-lite-d54d389_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by seqan3-3.4.0 for building ===> Extracting for seqan3-3.4.0 => SHA256 Checksum OK for seqan3-3.4.0/CPM.cmake. => SHA256 Checksum OK for seqan3-3.4.0/seqan-seqan3-3.4.0_GH0.tar.gz. => SHA256 Checksum OK for seqan3-3.4.0/xxsds-sdsl-lite-d54d389_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for seqan3-3.4.0 ===> Applying FreeBSD patches for seqan3-3.4.0 from /usr/ports/biology/seqan3/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seqan3-3.4.0 depends on package: cereal>0 - not found ===> Installing existing package /packages/All/cereal-1.3.2_1.pkg [pkg.DaveG.ca] Installing cereal-1.3.2_1... [pkg.DaveG.ca] `-- Installing boost-libs-1.89.0_2... [pkg.DaveG.ca] | `-- Installing icu-76.1,1... [pkg.DaveG.ca] | `-- Extracting icu-76.1,1: .......... done [pkg.DaveG.ca] | `-- Installing zstd-1.5.7_1... [pkg.DaveG.ca] | `-- Extracting zstd-1.5.7_1: .......... done [pkg.DaveG.ca] `-- Extracting boost-libs-1.89.0_2: .......... done [pkg.DaveG.ca] Extracting cereal-1.3.2_1: .......... done ===== Message from boost-libs-1.89.0_2: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> seqan3-3.4.0 depends on package: cereal>0 - found ===> Returning to build of seqan3-3.4.0 ===> seqan3-3.4.0 depends on package: range-v3>0 - not found ===> Installing existing package /packages/All/range-v3-0.12.0.pkg [pkg.DaveG.ca] Installing range-v3-0.12.0... [pkg.DaveG.ca] Extracting range-v3-0.12.0: .......... done ===== Message from range-v3-0.12.0: -- ===> NOTICE: The range-v3 port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> seqan3-3.4.0 depends on package: range-v3>0 - found ===> Returning to build of seqan3-3.4.0 ===> seqan3-3.4.0 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.10_1.pkg [pkg.DaveG.ca] Installing cmake-core-3.31.10_1... [pkg.DaveG.ca] `-- Installing expat-2.7.4... [pkg.DaveG.ca] `-- Extracting expat-2.7.4: .......... done [pkg.DaveG.ca] `-- Installing jsoncpp-1.9.6_1... [pkg.DaveG.ca] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg.DaveG.ca] `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | `-- Installing libunistring-1.4.2... [pkg.DaveG.ca] | `-- Extracting libunistring-1.4.2: .......... done [pkg.DaveG.ca] `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] `-- Installing libuv-1.52.0... [pkg.DaveG.ca] `-- Extracting libuv-1.52.0: .......... done [pkg.DaveG.ca] `-- Installing rhash-1.4.6... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] `-- Extracting rhash-1.4.6: .......... done [pkg.DaveG.ca] Extracting cmake-core-3.31.10_1: .......... done ===> seqan3-3.4.0 depends on file: /usr/local/bin/cmake - found ===> Returning to build of seqan3-3.4.0 ===> seqan3-3.4.0 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.13.2,4.pkg [pkg.DaveG.ca] Installing ninja-1.13.2,4... [pkg.DaveG.ca] `-- Installing python311-3.11.15... [pkg.DaveG.ca] | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | `-- Installing readline-8.3.3... [pkg.DaveG.ca] | `-- Extracting readline-8.3.3: .......... done [pkg.DaveG.ca] `-- Extracting python311-3.11.15: .......... done [pkg.DaveG.ca] Extracting ninja-1.13.2,4: ..... done ===== Message from python311-3.11.15: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> seqan3-3.4.0 depends on executable: ninja - found ===> Returning to build of seqan3-3.4.0 ===> seqan3-3.4.0 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> seqan3-3.4.0 depends on file: /usr/local/bin/ccache - found ===> Returning to build of seqan3-3.4.0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for seqan3-3.4.0 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/seqan3/work/.build -- The CXX compiler identification is Clang 19.1.7 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Finding SeqAn3 and checking requirements: -- SeqAn3 include dir found: /wrkdirs/usr/ports/biology/seqan3/work/seqan3-3.4.0/include -- Thread support: via -pthread -- CMake Package Manager CPM: Adding package cereal@1.3.2 (v1.3.2) CMake Warning at /usr/local/share/cmake/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency cereal to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /wrkdirs/usr/ports/biology/seqan3/work/.build/_deps/cereal-src Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/local/share/cmake/Modules/FetchContent.cmake:2384 (__FetchContent_Populate) /wrkdirs/usr/ports/biology/seqan3/work/.build/cmake/CPM_0.42.0.cmake:1208 (FetchContent_MakeAvailable) /wrkdirs/usr/ports/biology/seqan3/work/.build/cmake/CPM_0.42.0.cmake:989 (cpm_fetch_package) /wrkdirs/usr/ports/biology/seqan3/work/.build/cmake/CPM_0.42.0.cmake:792 (CPMAddPackage) /wrkdirs/usr/ports/biology/seqan3/work/.build/cmake/CPM_0.42.0.cmake:1014 (CPMAddPackage) cmake/seqan3-config.cmake:188 (CPMGetPackage) CMakeLists.txt:22 (include) -- Optional dependency: Cereal not found. -- Optional dependency: ZLIB-1.3.1 found. -- Optional dependency: BZip2-1.0.8 found. -- Optional dependency: libexecinfo found. -- SeqAn3 platform.hpp build: passed. -- CMake Package Manager CPM: Adding package use_ccache@0 (d2a54ef555b6fc2d496a4c9506dbeb7cf899ce37) CMake Warning at /usr/local/share/cmake/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency use_ccache to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /wrkdirs/usr/ports/biology/seqan3/work/.build/_deps/use_ccache-src Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/local/share/cmake/Modules/FetchContent.cmake:2384 (__FetchContent_Populate) /wrkdirs/usr/ports/biology/seqan3/work/.build/cmake/CPM_0.42.0.cmake:1208 (FetchContent_MakeAvailable) /wrkdirs/usr/ports/biology/seqan3/work/.build/cmake/CPM_0.42.0.cmake:989 (cpm_fetch_package) /wrkdirs/usr/ports/biology/seqan3/work/.build/cmake/CPM_0.42.0.cmake:792 (CPMAddPackage) /wrkdirs/usr/ports/biology/seqan3/work/.build/cmake/CPM_0.42.0.cmake:1014 (CPMAddPackage) cmake/seqan3-package.cmake:22 (CPMGetPackage) CMakeLists.txt:28 (include) -- Configuring done (9.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_AUTOGEN_PARALLEL CMAKE_COLOR_MAKEFILE CMAKE_CXX_FLAGS_RELEASE CMAKE_C_COMPILER CMAKE_C_FLAGS CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_INSTALL_RPATH_USE_LINK_PATH CMAKE_MODULE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE -- Build files have been written to: /wrkdirs/usr/ports/biology/seqan3/work/.build =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for seqan3-3.4.0 ninja: no work to do. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> seqan3-3.4.0 depends on package: cereal>0 - found ===> seqan3-3.4.0 depends on package: range-v3>0 - found ===> seqan3-3.4.0 depends on package: coin-or-lemon>0 - not found ===> Installing existing package /packages/All/coin-or-lemon-1.3.1_4.pkg [pkg.DaveG.ca] Installing coin-or-lemon-1.3.1_4... [pkg.DaveG.ca] `-- Installing coin-or-Clp-1.17.9_2... [pkg.DaveG.ca] | `-- Installing blas-3.12.1... [pkg.DaveG.ca] | | `-- Installing gcc14-14.2.0_4... [pkg.DaveG.ca] | | `-- Installing binutils-2.44,1... [pkg.DaveG.ca] | | `-- Extracting binutils-2.44,1: .......... done [pkg.DaveG.ca] | | `-- Installing gmp-6.3.0... [pkg.DaveG.ca] | | `-- Extracting gmp-6.3.0: .......... done [pkg.DaveG.ca] | | `-- Installing mpc-1.3.1_1... [pkg.DaveG.ca] | | | `-- Installing mpfr-4.2.2,1... [pkg.DaveG.ca] | | | `-- Extracting mpfr-4.2.2,1: .......... done [pkg.DaveG.ca] | | `-- Extracting mpc-1.3.1_1: ...... done [pkg.DaveG.ca] | | `-- Extracting gcc14-14.2.0_4: .......... done create symlink for gcc14 create symlink for gcc14 (world) create symlink for g++14 create symlink for g++14 (world) create symlink for cpp14 create symlink for cpp14 (world) [pkg.DaveG.ca] | `-- Extracting blas-3.12.1: ..... done [pkg.DaveG.ca] | `-- Installing coin-or-CoinUtils-2.11.12_1... [pkg.DaveG.ca] | | `-- Installing coin-or-Data-Netlib-1.2.11... [pkg.DaveG.ca] | | `-- Extracting coin-or-Data-Netlib-1.2.11: .......... done [pkg.DaveG.ca] | | `-- Installing coin-or-Data-Sample-1.2.13... [pkg.DaveG.ca] | | `-- Extracting coin-or-Data-Sample-1.2.13: .......... done [pkg.DaveG.ca] | | `-- Installing openblas-0.3.30,2... [pkg.DaveG.ca] | | `-- Extracting openblas-0.3.30,2: .......... done [pkg.DaveG.ca] | `-- Extracting coin-or-CoinUtils-2.11.12_1: .......... done [pkg.DaveG.ca] | `-- Installing coin-or-Osi-0.108.11_1... [pkg.DaveG.ca] | `-- Extracting coin-or-Osi-0.108.11_1: .......... done [pkg.DaveG.ca] | `-- Installing coin-or-asl-2.1.0... [pkg.DaveG.ca] | `-- Extracting coin-or-asl-2.1.0: .......... done [pkg.DaveG.ca] | `-- Installing coin-or-metis-1.3.10_3... [pkg.DaveG.ca] | `-- Extracting coin-or-metis-1.3.10_3: .......... done [pkg.DaveG.ca] | `-- Installing coin-or-mumps-3.0.3_4... [pkg.DaveG.ca] | | `-- Installing lapack-3.12.1... [pkg.DaveG.ca] | | `-- Extracting lapack-3.12.1: .......... done [pkg.DaveG.ca] | `-- Extracting coin-or-mumps-3.0.3_4: ......... done [pkg.DaveG.ca] `-- Extracting coin-or-Clp-1.17.9_2: .......... done [pkg.DaveG.ca] `-- Installing coin-or-cbc-2.10.12_1... [pkg.DaveG.ca] | `-- Installing coin-or-cgl-0.60.9_2... [pkg.DaveG.ca] | `-- Extracting coin-or-cgl-0.60.9_2: .......... done [pkg.DaveG.ca] | `-- Installing nauty-2.8.6_1,1... [pkg.DaveG.ca] | `-- Extracting nauty-2.8.6_1,1: .......... done [pkg.DaveG.ca] `-- Extracting coin-or-cbc-2.10.12_1: .......... done [pkg.DaveG.ca] `-- Installing glpk-5.0... [pkg.DaveG.ca] `-- Extracting glpk-5.0: .......... done [pkg.DaveG.ca] Extracting coin-or-lemon-1.3.1_4: .......... done ===== Message from gcc14-14.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from glpk-5.0: -- ===> NOTICE: The glpk port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> seqan3-3.4.0 depends on package: coin-or-lemon>0 - found ===> Returning to build of seqan3-3.4.0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for seqan3-3.4.0 ===> Generating temporary packing list [ 0% 1/1] cd /wrkdirs/usr/ports/biology/seqan3/work/.build && /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/share/doc/seqan3/CHANGELOG.md -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/share/doc/seqan3/CODE_OF_CONDUCT.md -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/share/doc/seqan3/CONTRIBUTING.md -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/share/doc/seqan3/LICENSE.md -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/share/doc/seqan3/README.md -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/share/cmake/seqan3/seqan3-config.cmake -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/share/cmake/seqan3/seqan3-config-version.cmake -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3 -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/exception.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_proxy.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/advanceable_alignment_coordinate.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/trace_matrix_full.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/trace_directions.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_base.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/two_dimensional_matrix_iterator_base.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/affine_cell_proxy.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/alignment_score_matrix_proxy.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/trace_iterator_banded.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/combined_score_and_trace_matrix.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/alignment_optimum.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/coordinate_matrix.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/alignment_matrix_column_major_range_base.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/debug_matrix.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/aligned_sequence_builder.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_full.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/matrix_concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_banded.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_base.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/edit_distance_score_matrix_full.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/matrix_coordinate.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/edit_distance_trace_matrix_full.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/trace_iterator_base.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/score_matrix_single_column.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/two_dimensional_matrix_iterator_concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/trace_iterator.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/alignment_trace_matrix_full_banded.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/two_dimensional_matrix.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/matrix/detail/row_wise_matrix.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/aligned_sequence -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/aligned_sequence/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/aligned_sequence/aligned_sequence_concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/aligned_sequence/debug_stream_alignment.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/detail/pairwise_alignment_concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/configuration -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/configuration/align_config_scoring_scheme.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/configuration/align_config_debug.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/configuration/align_config_edit.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/configuration/align_config_score_type.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/configuration/align_config_output.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/configuration/align_config_min_score.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/configuration/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/configuration/align_config_band.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/configuration/align_config_result_type.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/configuration/align_config_vectorised.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/configuration/align_config_on_result.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/configuration/align_config_method.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/configuration/detail.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/configuration/align_config_parallel.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/configuration/align_config_gap_cost_affine.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/cigar_conversion -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/cigar_conversion/alignment_from_cigar.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/cigar_conversion/cigar_from_alignment.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/cigar_conversion/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/edit_distance_unbanded.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/alignment_configurator.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/edit_distance_fwd.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/alignment_algorithm.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/detail/policy_scoring_scheme.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/detail/policy_optimum_tracker.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/detail/concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/detail/policy_affine_gap_with_trace_recursion_banded.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/detail/policy_alignment_result_builder.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/detail/policy_affine_gap_recursion.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm_banded.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/detail/policy_optimum_tracker_simd.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/detail/alignment_algorithm_state.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/detail/policy_affine_gap_recursion_banded.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/detail/policy_affine_gap_with_trace_recursion.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/detail/policy_alignment_matrix.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/detail/type_traits.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/align_result_selector.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/align_pairwise.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/alignment_result.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/policy -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/policy/scoring_scheme_policy.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/policy/find_optimum_policy.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/policy/simd_affine_gap_policy.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/policy/affine_gap_policy.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/policy/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/policy/alignment_matrix_policy.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/policy/affine_gap_init_policy.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/policy/simd_find_optimum_policy.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/pairwise/edit_distance_algorithm.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/decorator -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/decorator/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/decorator/gap_decorator.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/scoring -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/scoring/scoring_scheme_concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/scoring/scoring_scheme_base.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/scoring/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/scoring/hamming_scoring_scheme.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/scoring/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/scoring/detail/simd_matrix_scoring_scheme.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/scoring/detail/simd_match_mismatch_scoring_scheme.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/scoring/nucleotide_scoring_scheme.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alignment/scoring/aminoacid_scoring_scheme.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/argument_parser -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/argument_parser/auxiliary.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/argument_parser/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/argument_parser/exceptions.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/argument_parser/validators.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/argument_parser/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/argument_parser/detail/format_man.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/argument_parser/detail/concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/argument_parser/detail/format_base.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/argument_parser/detail/format_help.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/argument_parser/detail/version_check.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/argument_parser/detail/format_parse.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/argument_parser/detail/format_html.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/argument_parser/detail/terminal.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/argument_parser/argument_parser.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/debug_stream.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/platform.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/debug_stream -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/debug_stream/default_printer.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/debug_stream/byte.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/debug_stream/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/debug_stream/optional.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/debug_stream/range.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/debug_stream/variant.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/debug_stream/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/debug_stream/detail/to_string.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/debug_stream/debug_stream_type.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/debug_stream/tuple.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/range -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/range/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/range/detail -- 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/wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/detail/deferred_crtp_base.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/detail/is_class_template_declarable.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/add_enum_bitwise_operators.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/algorithm -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/algorithm/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/algorithm/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/algorithm/detail/execution_handler_sequential.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/algorithm/detail/execution_handler_parallel.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/algorithm/detail/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/algorithm/detail/algorithm_executor_blocking.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/algorithm/algorithm_result_generator_range.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/configuration -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/configuration/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/configuration/configuration.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/configuration/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/configuration/detail/configuration_element_parallel_mode.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/configuration/detail/concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/configuration/detail/configuration_utility.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/configuration/detail/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/configuration/detail/configuration_element_debug_mode.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/configuration/pipeable_config_element.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/concept -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/concept/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/core/concept/cereal.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/search.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/fm_index -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/fm_index/bi_fm_index.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/fm_index/bi_fm_index_cursor.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/fm_index/concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/fm_index/fm_index.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/fm_index/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/fm_index/fm_index_cursor.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/fm_index/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/fm_index/detail/fm_index_cursor.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/detail/search_scheme_precomputed.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/detail/policy_max_error.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/detail/search_scheme_algorithm.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/detail/search_common.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/detail/search_traits.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/detail/unidirectional_search_algorithm.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/detail/search_configurator.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/detail/policy_search_result_builder.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/kmer_index -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/kmer_index/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/kmer_index/shape.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/search_result.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/configuration -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/configuration/parallel.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/configuration/max_error_common.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/configuration/on_result.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/configuration/result_type.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/configuration/max_error.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/configuration/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/configuration/hit.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/configuration/default_configuration.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/configuration/detail.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/configuration/output.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/dream_index -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/dream_index/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/views -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/views/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/views/kmer_hash.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/views/minimiser.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/search/views/minimiser_hash.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/version.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_list -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_list/traits.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_list/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_list/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_list/detail/type_list_algorithm.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_list/type_list.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_pack -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_pack/traits.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_pack/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_pack/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_pack/detail/type_pack_algorithm.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/char_operations -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/char_operations/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/char_operations/predicate_detail.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/char_operations/transform.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/char_operations/pretty_print.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/char_operations/predicate.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/math.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/tuple -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/tuple/split.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/tuple/concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/tuple/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/tuple/pop_front.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/tuple/common_pair.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/tuple/common_tuple.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/tuple/pod_tuple.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/range -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/range/concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/range/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/range/to.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/parallel -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/parallel/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/parallel/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/parallel/detail/latch.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/parallel/detail/spin_delay.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/parallel/detail/reader_writer_manager.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/parallel/detail/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/detail/integer_traits.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/detail/bits_of.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/detail/type_name_as_string.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/detail/multi_invocable.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/detail/to_little_endian.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/simd_traits.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/detail/simd_algorithm_sse4.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/detail/simd_algorithm_avx2.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/detail/default_simd_backend.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/detail/default_simd_length.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/detail/simd_algorithm_avx512.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/detail/builtin_simd_intrinsics.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/detail/debug_stream_simd.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/detail/builtin_simd.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/simd.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/views -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/views/to_simd.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/views/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/views/iota_simd.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/simd/algorithm.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/bloom_filter -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/bloom_filter/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/bloom_filter/bloom_filter_strong_types.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/bloom_filter/bloom_filter.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_traits -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_traits/concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_traits/lazy_conditional.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_traits/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_traits/basic.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_traits/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_traits/detail/transformation_trait_or.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/type_traits/function_traits.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/views -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/views/interleave.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/views/type_reduce.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/views/single_pass_input.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/views/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/views/enforce_random_access.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/views/pairwise_combine.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/views/repeat_n.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/views/zip.hpp -- Installing: 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/wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/views/join_with.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/views/deep.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/container -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/container/dynamic_bitset.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/container/concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/container/small_string.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/container/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/container/aligned_allocator.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/utility/container/small_vector.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/exception.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sam_file -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sam_file/output_format_concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sam_file/format_sam.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sam_file/sam_flag.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sam_file/format_bam.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sam_file/header.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sam_file/output_options.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sam_file/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sam_file/input_format_concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sam_file/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sam_file/detail/cigar.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sam_file/detail/format_sam_base.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sam_file/sam_tag_dictionary.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sam_file/record.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sam_file/input_options.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sam_file/input.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sam_file/output.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sequence_file -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sequence_file/output_format_concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sequence_file/format_genbank.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sequence_file/output_options.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sequence_file/format_embl.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sequence_file/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sequence_file/format_fastq.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sequence_file/input_format_concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sequence_file/record.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sequence_file/input_options.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sequence_file/format_fasta.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sequence_file/input.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/sequence_file/output.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/detail/in_file_iterator.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/detail/misc_output.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/detail/misc.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/detail/record_like.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/detail/magic_header.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/detail/misc_input.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/detail/record.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/detail/out_file_iterator.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/detail/ignore_output_iterator.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/detail/safe_filesystem_entry.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/stream -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/stream/concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/stream/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/stream/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/io/stream/detail/fast_istreambuf_iterator.hpp -- Installing: 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/wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/aminoacid/aa10murphy.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/aminoacid/aa20.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/aminoacid/aminoacid_base.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/quality -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/quality/concept.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/quality/phred42.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/quality/phred68solexa.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/quality/phred_base.hpp -- Installing: 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/wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/mask/mask.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/views -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/views/trim_quality.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/views/char_strictly_to.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/views/validate_char_for.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/views/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/views/translate.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/views/complement.hpp -- Installing: 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/wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/nucleotide/dna3bs.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/nucleotide/all.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/nucleotide/rna5.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/nucleotide/rna4.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/nucleotide/nucleotide_base.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/nucleotide/dna4.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/nucleotide/dna16sam.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/alphabet/nucleotide/dna15.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/parallel -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/parallel/buffer_queue.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/parallel/serialised_resource_pool.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/parallel/suspendable_queue.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/stream -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/stream/bz2_istream.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/stream/bgzf_stream_util.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/stream/bgzf.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/stream/bz2_ostream.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/stream/gz_istream.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/stream/gz_ostream.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/stream/bgzf_ostream.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/stream/bgzf_istream.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/README.md -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/LICENSE.md -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/.gitignore -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/join_with_view.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/chunk_view.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/all_view.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/.clang-format -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/concepts.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/to.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/pair.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/zip_view.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/detail -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/detail/non_propagating_cache.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/detail/adaptor_base.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/detail/compiler_definitions.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/detail/adaptor_for_view_without_args.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/detail/movable_box.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/detail/exposition_only.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/detail/adaptor_from_functor.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/enumerate_view.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/LICENSES -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/LICENSES/BSD-3-Clause.txt -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/LICENSES/CC0-1.0.txt -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/LICENSES/CC-BY-4.0.txt -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/README.md -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/chunk_by_view.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/std/tuple.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/contrib/sdsl-lite.hpp -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/std -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/std/new -- Installing: /wrkdirs/usr/ports/biology/seqan3/work/stage/usr/local/include/seqan3/std/charconv ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-03-12T07:38:37+0000' 'PKG_NOTE_ports_top_git_hash=26b198eb3ee3' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=2bf6663f5380' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for seqan3-3.4.0 ===> Building seqan3-3.4.0 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for seqan3-3.4.0 build of biology/seqan3 | seqan3-3.4.0 ended at Thu Mar 12 03:39:13 EDT 2026 build time: 00:00:37