=>> Building science/rdkit build started at Wed Mar 18 06:36:10 EDT 2026 port directory: /usr/ports/science/rdkit package name: rdkit-2025.09.2 building for: FreeBSD pkg.DaveG.ca 15.0-RELEASE-p3 FreeBSD 15.0-RELEASE-p3 1500068 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 4719 Nov 24 20:51 /usr/ports/science/rdkit/Makefile Ports top last git commit: 8c988f802ea2 Ports top unclean checkout: no Port dir last git commit: 93d9572c0a46 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1500068 Job Id: 01 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500068 UNAME_v=FreeBSD 15.0-RELEASE-p3 1500068 UNAME_r=15.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/01/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_15_0_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for rdkit-2025.09.2: DOCS=on: Build and/or install documentation PGSQL=off: Build the PostgreSQL cartridge PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/rdkit/work/.cache HOME=/wrkdirs/usr/ports/science/rdkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/rdkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/rdkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/rdkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/rdkit/work/.cache HOME=/wrkdirs/usr/ports/science/rdkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/rdkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/rdkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/rdkit/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- SHLIB_VER=2025.09.2 PORTDOCS="" DOCS="" NO_DOCS="@comment " PGSQL="@comment " NO_PGSQL="" PYTHON="" NO_PYTHON="@comment " LITTLE_ENDIAN="" CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" GTK4_VERSION="4.0.0" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/RDKit" EXAMPLESDIR="share/examples/rdkit" DATADIR="share/RDKit" WWWDIR="www/rdkit" ETCDIR="etc/rdkit" --End PLIST_SUB-- --SUB_LIST-- DOCS="" NO_DOCS="@comment " PGSQL="@comment " NO_PGSQL="" PYTHON="" NO_PYTHON="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/RDKit DOCSDIR=/usr/local/share/doc/RDKit EXAMPLESDIR=/usr/local/share/examples/rdkit WWWDIR=/usr/local/www/rdkit ETCDIR=/usr/local/etc/rdkit --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> rdkit-2025.09.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.6.2.pkg [pkg.DaveG.ca] Installing pkg-2.6.2... [pkg.DaveG.ca] Extracting pkg-2.6.2: .......... done ===> rdkit-2025.09.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of rdkit-2025.09.2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by rdkit-2025.09.2 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by rdkit-2025.09.2 for building => SHA256 Checksum OK for rdkit-2025.09.2/v1.3.3.tar.gz. => SHA256 Checksum OK for rdkit-2025.09.2/v3.0.2.tar.gz. => SHA256 Checksum OK for rdkit-2025.09.2/v1.0.11. => SHA256 Checksum OK for rdkit-2025.09.2/v1.1.0.tar.gz. => SHA256 Checksum OK for rdkit-2025.09.2/ComicNeue-Regular.ttf. => SHA256 Checksum OK for rdkit-2025.09.2/rdkit-rdkit-Release_2025_09_2_GH0.tar.gz. => SHA256 Checksum OK for rdkit-2025.09.2/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz. => SHA256 Checksum OK for rdkit-2025.09.2/ncbi-pubchem-align3d-daefab3_GH0.tar.gz. => SHA256 Checksum OK for rdkit-2025.09.2/aantron-better-enums-520d8ee_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by rdkit-2025.09.2 for building ===> Extracting for rdkit-2025.09.2 => SHA256 Checksum OK for rdkit-2025.09.2/v1.3.3.tar.gz. => SHA256 Checksum OK for rdkit-2025.09.2/v3.0.2.tar.gz. => SHA256 Checksum OK for rdkit-2025.09.2/v1.0.11. => SHA256 Checksum OK for rdkit-2025.09.2/v1.1.0.tar.gz. => SHA256 Checksum OK for rdkit-2025.09.2/ComicNeue-Regular.ttf. => SHA256 Checksum OK for rdkit-2025.09.2/rdkit-rdkit-Release_2025_09_2_GH0.tar.gz. => SHA256 Checksum OK for rdkit-2025.09.2/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz. => SHA256 Checksum OK for rdkit-2025.09.2/ncbi-pubchem-align3d-daefab3_GH0.tar.gz. => SHA256 Checksum OK for rdkit-2025.09.2/aantron-better-enums-520d8ee_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for rdkit-2025.09.2 ===> Applying FreeBSD patches for rdkit-2025.09.2 from /usr/ports/science/rdkit/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> rdkit-2025.09.2 depends on package: catch>0 - not found ===> Installing existing package /packages/All/catch-2.13.10_1.pkg [pkg.DaveG.ca] Installing catch-2.13.10_1... [pkg.DaveG.ca] Extracting catch-2.13.10_1: .......... done ===> rdkit-2025.09.2 depends on package: catch>0 - found ===> Returning to build of rdkit-2025.09.2 ===> rdkit-2025.09.2 depends on executable: flex - found ===> rdkit-2025.09.2 depends on package: py311-numpy>=1.16,1<1.27,1 - not found ===> Installing existing package /packages/All/py311-numpy-1.26.4_12,1.pkg [pkg.DaveG.ca] Installing py311-numpy-1.26.4_12,1... [pkg.DaveG.ca] `-- Installing gcc14-14.2.0_4... [pkg.DaveG.ca] | `-- Installing binutils-2.44,1... [pkg.DaveG.ca] | | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | | `-- Installing zstd-1.5.7_1... [pkg.DaveG.ca] | | `-- Extracting zstd-1.5.7_1: .......... done [pkg.DaveG.ca] | `-- Extracting binutils-2.44,1: .......... done [pkg.DaveG.ca] | `-- Installing gmp-6.3.0... [pkg.DaveG.ca] | `-- Extracting gmp-6.3.0: .......... done [pkg.DaveG.ca] | `-- Installing mpc-1.3.1_1... [pkg.DaveG.ca] | | `-- Installing mpfr-4.2.2,1... [pkg.DaveG.ca] | | `-- Extracting mpfr-4.2.2,1: .......... done [pkg.DaveG.ca] | `-- Extracting mpc-1.3.1_1: ...... done [pkg.DaveG.ca] `-- Extracting gcc14-14.2.0_4: .......... done [pkg.DaveG.ca] `-- Installing openblas-0.3.30,2... [pkg.DaveG.ca] `-- Extracting openblas-0.3.30,2: .......... done [pkg.DaveG.ca] `-- Installing python311-3.11.15... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | `-- Installing readline-8.3.3... [pkg.DaveG.ca] | `-- Extracting readline-8.3.3: .......... done [pkg.DaveG.ca] `-- Extracting python311-3.11.15: .......... done [pkg.DaveG.ca] `-- Installing suitesparse-umfpack-6.3.7... [pkg.DaveG.ca] | `-- Installing suitesparse-amd-3.3.4... [pkg.DaveG.ca] | | `-- Installing suitesparse-config-7.12.2... [pkg.DaveG.ca] | | `-- Extracting suitesparse-config-7.12.2: .......... done [pkg.DaveG.ca] | `-- Extracting suitesparse-amd-3.3.4: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-camd-3.3.5... [pkg.DaveG.ca] | `-- Extracting suitesparse-camd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-ccolamd-3.3.5... [pkg.DaveG.ca] | `-- Extracting suitesparse-ccolamd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-cholmod-5.3.4... [pkg.DaveG.ca] | | `-- Installing suitesparse-colamd-3.3.5... [pkg.DaveG.ca] | | `-- Extracting suitesparse-colamd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Extracting suitesparse-cholmod-5.3.4: .......... done [pkg.DaveG.ca] `-- Extracting suitesparse-umfpack-6.3.7: .......... done [pkg.DaveG.ca] Extracting py311-numpy-1.26.4_12,1: .......... done ===== Message from gcc14-14.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python311-3.11.15: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> rdkit-2025.09.2 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> Returning to build of rdkit-2025.09.2 ===> rdkit-2025.09.2 depends on executable: bison - not found ===> Installing existing package /packages/All/bison-3.8.2_2,1.pkg [pkg.DaveG.ca] Installing bison-3.8.2_2,1... [pkg.DaveG.ca] `-- Installing libtextstyle-0.26... [pkg.DaveG.ca] `-- Extracting libtextstyle-0.26: .......... done [pkg.DaveG.ca] `-- Installing m4-1.4.21,1... [pkg.DaveG.ca] `-- Extracting m4-1.4.21,1: .......... done [pkg.DaveG.ca] Extracting bison-3.8.2_2,1: .......... done ===> rdkit-2025.09.2 depends on executable: bison - found ===> Returning to build of rdkit-2025.09.2 ===> rdkit-2025.09.2 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.10_1.pkg [pkg.DaveG.ca] Installing cmake-core-3.31.10_1... [pkg.DaveG.ca] `-- Installing expat-2.7.4... [pkg.DaveG.ca] `-- Extracting expat-2.7.4: .......... done [pkg.DaveG.ca] `-- Installing jsoncpp-1.9.6_1... [pkg.DaveG.ca] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg.DaveG.ca] `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | `-- Installing libunistring-1.4.2... [pkg.DaveG.ca] | `-- Extracting libunistring-1.4.2: .......... done [pkg.DaveG.ca] `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] `-- Installing libuv-1.52.0... [pkg.DaveG.ca] `-- Extracting libuv-1.52.0: .......... done [pkg.DaveG.ca] `-- Installing rhash-1.4.6... [pkg.DaveG.ca] `-- Extracting rhash-1.4.6: .......... done [pkg.DaveG.ca] Extracting cmake-core-3.31.10_1: .......... done ===> rdkit-2025.09.2 depends on file: /usr/local/bin/cmake - found ===> Returning to build of rdkit-2025.09.2 ===> rdkit-2025.09.2 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.13.2,4.pkg [pkg.DaveG.ca] Installing ninja-1.13.2,4... [pkg.DaveG.ca] Extracting ninja-1.13.2,4: ..... done ===> rdkit-2025.09.2 depends on executable: ninja - found ===> Returning to build of rdkit-2025.09.2 ===> rdkit-2025.09.2 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.4.0_4.pkg [pkg.DaveG.ca] Installing eigen-3.4.0_4... [pkg.DaveG.ca] `-- Installing blas-3.12.1... [pkg.DaveG.ca] `-- Extracting blas-3.12.1: ..... done [pkg.DaveG.ca] `-- Installing lapack-3.12.1... [pkg.DaveG.ca] `-- Extracting lapack-3.12.1: .......... done [pkg.DaveG.ca] Extracting eigen-3.4.0_4: .......... done ===> rdkit-2025.09.2 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of rdkit-2025.09.2 ===> rdkit-2025.09.2 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-2.4.3,1.pkg [pkg.DaveG.ca] Installing pkgconf-2.4.3,1... [pkg.DaveG.ca] Extracting pkgconf-2.4.3,1: .......... done ===> rdkit-2025.09.2 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of rdkit-2025.09.2 ===> rdkit-2025.09.2 depends on file: /usr/local/bin/python3.11 - found ===> rdkit-2025.09.2 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc14 create symlink for gcc14 (world) create symlink for g++14 create symlink for g++14 (world) create symlink for cpp14 create symlink for cpp14 (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> rdkit-2025.09.2 depends on file: /usr/local/bin/ccache - found ===> Returning to build of rdkit-2025.09.2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> rdkit-2025.09.2 depends on shared library: libboost_thread.so - not found ===> Installing existing package /packages/All/boost-libs-1.89.0_2.pkg [pkg.DaveG.ca] Installing boost-libs-1.89.0_2... [pkg.DaveG.ca] `-- Installing icu-76.1,1... [pkg.DaveG.ca] `-- Extracting icu-76.1,1: .......... done [pkg.DaveG.ca] Extracting boost-libs-1.89.0_2: .......... done ===== Message from boost-libs-1.89.0_2: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> rdkit-2025.09.2 depends on shared library: libboost_thread.so - found (/usr/local/lib/libboost_thread.so) ===> Returning to build of rdkit-2025.09.2 ===> rdkit-2025.09.2 depends on shared library: libfreetype.so - not found ===> Installing existing package /packages/All/freetype2-2.14.1.pkg [pkg.DaveG.ca] Installing freetype2-2.14.1... [pkg.DaveG.ca] `-- Installing brotli-1.2.0,1... [pkg.DaveG.ca] `-- Extracting brotli-1.2.0,1: .......... done [pkg.DaveG.ca] `-- Installing png-1.6.55... [pkg.DaveG.ca] `-- Extracting png-1.6.55: .......... done [pkg.DaveG.ca] Extracting freetype2-2.14.1: .......... done ===== Message from freetype2-2.14.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===> rdkit-2025.09.2 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so) ===> Returning to build of rdkit-2025.09.2 ===> rdkit-2025.09.2 depends on shared library: libboost_python311.so - not found ===> Installing existing package /packages/All/py311-boost-libs-1.89.0.pkg [pkg.DaveG.ca] Installing py311-boost-libs-1.89.0... [pkg.DaveG.ca] Extracting py311-boost-libs-1.89.0: .......... done ===== Message from py311-boost-libs-1.89.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> rdkit-2025.09.2 depends on shared library: libboost_python311.so - found (/usr/local/lib/libboost_python311.so) ===> Returning to build of rdkit-2025.09.2 ===> rdkit-2025.09.2 depends on shared library: libcairo.so - not found ===> Installing existing package /packages/All/cairo-1.18.2,3.pkg [pkg.DaveG.ca] Installing cairo-1.18.2,3... [pkg.DaveG.ca] `-- Installing fontconfig-2.17.1,1... [pkg.DaveG.ca] `-- Extracting fontconfig-2.17.1,1: .......... done [pkg.DaveG.ca] `-- Installing glib-2.84.4,2... [pkg.DaveG.ca] | `-- Installing libiconv-1.18_1... [pkg.DaveG.ca] | `-- Extracting libiconv-1.18_1: .......... done [pkg.DaveG.ca] | `-- Installing pcre2-10.47_1... [pkg.DaveG.ca] | `-- Extracting pcre2-10.47_1: .......... done [pkg.DaveG.ca] | `-- Installing py311-packaging-26.0... [pkg.DaveG.ca] | `-- Extracting py311-packaging-26.0: .......... done [pkg.DaveG.ca] `-- Extracting glib-2.84.4,2: .......... done [pkg.DaveG.ca] `-- Installing libX11-1.8.13,1... [pkg.DaveG.ca] | `-- Installing libxcb-1.17.0... [pkg.DaveG.ca] | | `-- Installing libXau-1.0.12... [pkg.DaveG.ca] | | `-- Extracting libXau-1.0.12: .......... done [pkg.DaveG.ca] | | `-- Installing libXdmcp-1.1.5... [pkg.DaveG.ca] | | `-- Installing xorgproto-2024.1... [pkg.DaveG.ca] | | `-- Extracting xorgproto-2024.1: .......... done [pkg.DaveG.ca] | | `-- Extracting libXdmcp-1.1.5: ...... done [pkg.DaveG.ca] | `-- Extracting libxcb-1.17.0: .......... done [pkg.DaveG.ca] `-- Extracting libX11-1.8.13,1: .......... done [pkg.DaveG.ca] `-- Installing libXext-1.3.6,1... [pkg.DaveG.ca] `-- Extracting libXext-1.3.6,1: .......... done [pkg.DaveG.ca] `-- Installing libXrender-0.9.12... [pkg.DaveG.ca] `-- Extracting libXrender-0.9.12: ....... done [pkg.DaveG.ca] `-- Installing lzo2-2.10_1... [pkg.DaveG.ca] `-- Extracting lzo2-2.10_1: .......... done [pkg.DaveG.ca] `-- Installing pixman-0.46.2... [pkg.DaveG.ca] `-- Extracting pixman-0.46.2: ...... done [pkg.DaveG.ca] Extracting cairo-1.18.2,3: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ===> rdkit-2025.09.2 depends on shared library: libcairo.so - found (/usr/local/lib/libcairo.so) ===> Returning to build of rdkit-2025.09.2 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for rdkit-2025.09.2 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/rdkit/work/.build -- The C compiler identification is Clang 19.1.7 -- The CXX compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning at /usr/local/share/cmake/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency Catch2 to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /wrkdirs/usr/ports/science/rdkit/work/.build/_deps/catch2-src Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/local/share/cmake/Modules/FetchContent.cmake:2384 (__FetchContent_Populate) CMakeLists.txt:179 (FetchContent_MakeAvailable) -- Found Python3: /usr/local/bin/python3.11 (found version "3.11.15") found components: Interpreter Development.Module NumPy Python Install directory /usr/local/lib/python3.11/site-packages nbval not found, disabling the jupyter tests -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE == Using strict rotor definition Downloading file:///portdistfiles/rdkit-2025.09.2/v1.3.3.tar.gz... Downloading file:///portdistfiles/rdkit-2025.09.2/v3.0.2.tar.gz... -- Found RingDecomposerLib source in /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -- Found Python3: /usr/local/bin/python3.11 (found version "3.11.15") found components: Interpreter Downloading file:///portdistfiles/rdkit-2025.09.2/v1.0.11... -- Looking for endianess - CHEMDRAW LITTLEENDIAN PLATFORM -- Looking for dlfcn.h -- Looking for dlfcn.h - found -- Looking for fcntl.h -- Looking for fcntl.h - found -- Looking for inttypes.h -- Looking for inttypes.h - found -- Looking for memory.h -- Looking for memory.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stdlib.h -- Looking for stdlib.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for string.h -- Looking for string.h - found -- Looking for sys/stat.h -- Looking for sys/stat.h - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Looking for getpagesize -- Looking for getpagesize - found -- Looking for bcopy -- Looking for bcopy - found -- Looking for memmove -- Looking for memmove - found -- Looking for mmap -- Looking for mmap - found -- HAVE_DLFXN_H="" -- HAVE_FCNTL_H="1" -- HAVE_INTTYPES_H="1" -- HAVE_MEMORY_H="1" -- HAVE_STDINT_H="1" -- HAVE_STDLIB_H="1" -- HAVE_STRINGS_H="1" -- HAVE_STRING_H="1" -- HAVE_SYS_STAT_H="1" -- HAVE_SYS_TYPES_H="1" -- HAVE_SYS_UNISTD_H="" -- HAVE_GETPAGESIZE="1" -- HAVE_BCOPY="1" -- HAVE_MEMMOVE="1" -- HAVE_MMAP="1" -- Looking for 4 include files stdlib.h, ..., float.h -- Looking for 4 include files stdlib.h, ..., float.h - found -- Looking for off_t -- Looking for off_t - not found -- Looking for size_t -- Looking for size_t - not found == expat turn off warnings as errors when building /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Data/Fonts/ComicNeue-Regular.ttf already there, 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[ 15% 186/804] /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Code -isystem /usr/local/include/eigen3 -isystem /usr/local/include -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++20 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -MF Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o.d -o Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Code/GraphMol/SmilesParse/smiles.tab.cpp /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Code/GraphMol/SmilesParse/smiles.tab.cpp:1097:9: warning: variable 'yysmiles_nerrs' set but not used [-Wunused-but-set-variable] 1097 | int yynerrs = 0; | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Code/GraphMol/SmilesParse/smiles.tab.cpp:72:25: note: expanded from macro 'yynerrs' 72 | #define yynerrs yysmiles_nerrs | ^ 1 warning generated. [ 15% 187/804] : && /usr/local/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -Xlinker --dependency-file=Code/RDGeneral/CMakeFiles/RDGeneral.dir/link.d -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o lib/libRDKitRDGeneral.so.1.2025.09.2 Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o -Wl,-rpath,/usr/local/lib: -ldl -lpthread /usr/local/lib/libboost_serialization.so.1.89.0 /usr/local/lib/libboost_iostreams.so.1.89.0 /usr/local/lib/libboost_random.so.1.89.0 /usr/local/lib/libboost_regex.so.1.89.0 && : [ 15% 188/804] /usr/local/libexec/ccache/cc -DHAVE_EXPAT_CONFIG_H -DPLATFORM_LITTLEENDIAN -DRDKIT_DYN_LINK -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_USE_URF -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/wrkdirs/usr/ports/science/rdkit/work/.build -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expat/lib -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/expat/lib -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu99 -Wno-error -MD -MT External/ChemDraw/chemdraw/expatpp/CMakeFiles/expat.dir/expatpp-code-r6-trunk/expat/lib/xmlparse.c.o -MF External/ChemDraw/chemdraw/expatpp/CMakeFiles/expat.dir/expatpp-code-r6-trunk/expat/lib/xmlparse.c.o.d -o External/ChemDraw/chemdraw/expatpp/CMakeFiles/expat.dir/expatpp-code-r6-trunk/expat/lib/xmlparse.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/expat/lib/xmlparse.c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/expat/lib/xmlparse.c:1568:18: warning: implicit conversion from enumeration type 'enum XML_Status' to different enumeration type 'enum XML_Error' [-Wenum-conversion] 1568 | result = XML_STATUS_SUSPENDED; | ~ ^~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/expat/lib/expat.h:51:30: note: expanded from macro 'XML_STATUS_SUSPENDED' 51 | #define XML_STATUS_SUSPENDED XML_STATUS_SUSPENDED | ^~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/expat/lib/xmlparse.c:1578:18: warning: implicit conversion from enumeration type 'enum XML_Status' to different enumeration type 'enum XML_Error' [-Wenum-conversion] 1578 | result = XML_STATUS_OK; | ~ ^~~~~~~~~~~~~ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/expat/lib/expat.h:49:23: note: expanded from macro 'XML_STATUS_OK' 49 | #define XML_STATUS_OK XML_STATUS_OK | ^~~~~~~~~~~~~ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/expat/lib/xmlparse.c:1608:12: warning: implicit conversion from enumeration type 'enum XML_Error' to different enumeration type 'enum XML_Status' [-Wenum-conversion] 1608 | return result; | ~~~~~~ ^~~~~~ 3 warnings generated. 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/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:13: /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.h:334:57: warning: unused parameter 'callingChild' [-Wunused-parameter] 334 | expatppNesting::OwnedChildOrphansItself(expatppNesting* callingChild) | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:507:18: warning: unused parameter 'elname' [-Wunused-parameter] 507 | const XML_Char *elname, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:508:18: warning: unused parameter 'attname' [-Wunused-parameter] 508 | const XML_Char *attname, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:509:18: warning: unused parameter 'att_type' [-Wunused-parameter] 509 | const XML_Char *att_type, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:510:18: warning: unused parameter 'dflt' [-Wunused-parameter] 510 | const XML_Char *dflt, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:511:18: warning: unused parameter 'isrequired' [-Wunused-parameter] 511 | int isrequired) | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:517:35: warning: unused parameter 'data' [-Wunused-parameter] 517 | expatpp::comment( const XML_Char *data) | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:523:39: warning: unused parameter 'name' [-Wunused-parameter] 523 | expatpp::elementDecl( const XML_Char *name, XML_Content *model) | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:523:58: warning: unused parameter 'model' [-Wunused-parameter] 523 | expatpp::elementDecl( const XML_Char *name, XML_Content *model) | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:542:18: warning: unused parameter 'entityName' [-Wunused-parameter] 542 | const XML_Char *entityName, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:543:6: warning: unused parameter 'is_parameter_entity' [-Wunused-parameter] 543 | int is_parameter_entity, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:544:18: warning: unused parameter 'value' [-Wunused-parameter] 544 | const XML_Char *value, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:545:6: warning: unused parameter 'value_length' [-Wunused-parameter] 545 | int value_length, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:546:18: warning: unused parameter 'base' [-Wunused-parameter] 546 | const XML_Char *base, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:547:18: warning: unused parameter 'systemId' [-Wunused-parameter] 547 | const XML_Char *systemId, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:548:18: warning: unused parameter 'publicId' [-Wunused-parameter] 548 | const XML_Char *publicId, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:549:18: warning: unused parameter 'notationName' [-Wunused-parameter] 549 | const XML_Char *notationName) | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:555:41: warning: unused parameter 'entityName' [-Wunused-parameter] 555 | expatpp::skippedEntity( const XML_Char *entityName, int is_parameter_entity) | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:555:57: warning: unused parameter 'is_parameter_entity' [-Wunused-parameter] 555 | expatpp::skippedEntity( const XML_Char *entityName, int is_parameter_entity) | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:567:43: warning: unused parameter 'doctypeName' [-Wunused-parameter] 567 | expatpp::startDoctypeDecl(const XML_Char *doctypeName, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:568:25: warning: unused parameter 'sysid' [-Wunused-parameter] 568 | const XML_Char *sysid, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:569:25: warning: unused parameter 'pubid' [-Wunused-parameter] 569 | const XML_Char *pubid, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:570:13: warning: unused parameter 'has_internal_subset' [-Wunused-parameter] 570 | int has_internal_subset) | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:576:40: warning: unused parameter 'version' [-Wunused-parameter] 576 | expatpp::xmlDecl( const XML_Char *version, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:577:58: warning: unused parameter 'encoding' [-Wunused-parameter] 577 | const XML_Char *encoding, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:578:58: warning: unused parameter 'standalone' [-Wunused-parameter] 578 | int standalone) | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/ChemDraw/chemdraw/expatpp/expatpp-code-r6-trunk/src_pp/expatpp.cpp:615:2: warning: field 'mOwnedChild' will be initialized after field 'mSelfDeleting' [-Wreorder-ctor] 614 | mParent(parent), | ~~~~~~~~~~~~~~~ | mSelfDeleting(true) 615 | mOwnedChild(0), | ^~~~~~~~~~~~~~ | mParent(parent) 616 | mSelfDeleting(true) | ~~~~~~~~~~~~~~~~~~~ | mOwnedChild(0) 27 warnings generated. 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-I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -isystem /usr/local/include -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -std=gnu++20 -fPIC -pthread -Wno-unused-but-set-variable -MD -MT Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o -MF Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o.d -o Code/GraphMol/GeneralizedSubstruct/CMakeFiles/GeneralizedSubstruct.dir/TextIO.cpp.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Code/GraphMol/GeneralizedSubstruct/TextIO.cpp [ 51% 474/804] /usr/local/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB 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/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Code/ML/Cluster/Murtagh/hc.c:147:22: warning: passing arguments to 'ioffset_' without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 147 | ind1 = ioffset_(n, &i2, &k); | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Code/ML/Cluster/Murtagh/hc.c:149:22: warning: passing arguments to 'ioffset_' without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 149 | ind1 = ioffset_(n, &k, &i2); | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Code/ML/Cluster/Murtagh/hc.c:152:22: warning: passing arguments to 'ioffset_' without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 152 | ind2 = ioffset_(n, &j2, &k); | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Code/ML/Cluster/Murtagh/hc.c:154:22: warning: passing arguments to 'ioffset_' without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 154 | ind2 = ioffset_(n, &k, &j2); | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Code/ML/Cluster/Murtagh/hc.c:156:20: warning: passing arguments to 'ioffset_' without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 156 | ind3 = ioffset_(n, &i2, &j2); | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Code/ML/Cluster/Murtagh/hc.c:244:21: warning: passing arguments to 'ioffset_' without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 244 | ind = ioffset_(n, &i__, &j); | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Code/ML/Cluster/Murtagh/hc.c:29:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 29 | /* Subroutine */ int hc_(n, len, iopt, ia, ib, crit, membr, nn, disnn, flag__, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Code/ML/Cluster/Murtagh/hc.c:272:9: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 272 | integer ioffset_(n, i__, j) | ^ 10 warnings generated. [ 51% 475/804] /usr/local/libexec/ccache/cc -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_RANDOM_DYN_LINK -DBOOST_RANDOM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dhc_EXPORTS -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Code -isystem /usr/local/include/eigen3 -isystem /usr/local/include -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -Wno-array-bounds -fPIC -Wno-parentheses -Wno-logical-op-parentheses -Wno-format -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu99 -fPIC -pthread -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o -MF Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o.d -o Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o -c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Code/ML/Cluster/Murtagh/hcdriver.c /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Code/ML/Cluster/Murtagh/hcdriver.c:32:6: warning: passing arguments to 'hc_' without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 32 | hc_(n, len, iopt, &ia[1], &ib[1], &crit[1], membr, nn, disnn, flag__, | ^ /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/Code/ML/Cluster/Murtagh/hcdriver.c:10:5: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 10 | int distdriver_(n, len, d__, iopt, ia, ib, crit) | ^ 2 warnings generated. 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lib/libRDKitDataStructs.so.1.2025.09.2 lib/libRDKitRDGeneral.so.1.2025.09.2 -ldl lib/libRDKitChemDraw.so.1.2025.09.2 -lpthread /usr/local/lib/libboost_serialization.so.1.89.0 /usr/local/lib/libboost_iostreams.so.1.89.0 /usr/local/lib/libboost_random.so.1.89.0 /usr/local/lib/libboost_regex.so.1.89.0 && : [ 99% 801/804] : && /usr/local/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -Xlinker --dependency-file=Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/link.d -shared -Wl,-soname,libRDKitSynthonSpaceSearch.so.1 -o lib/libRDKitSynthonSpaceSearch.so.1.2025.09.2 Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSearch_details.cpp.o Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpace.cpp.o Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSet.cpp.o Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/Synthon.cpp.o Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSearcher.cpp.o Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceSubstructureSearcher.cpp.o Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceFingerprintSearcher.cpp.o Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceRascalSearcher.cpp.o Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SynthonSpaceHitSet.cpp.o Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/SearchResults.cpp.o Code/GraphMol/SynthonSpaceSearch/CMakeFiles/SynthonSpaceSearch.dir/MemoryMappedFileReader.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitRascalMCES.so.1.2025.09.2 lib/libRDKitGeneralizedSubstruct.so.1.2025.09.2 lib/libRDKitDescriptors.so.1.2025.09.2 lib/libRDKitMolEnumerator.so.1.2025.09.2 lib/libRDKitTautomerQuery.so.1.2025.09.2 lib/libRDKitMolStandardize.so.1.2025.09.2 lib/libRDKitChemReactions.so.1.2025.09.2 lib/libRDKitFingerprints.so.1.2025.09.2 lib/libRDKitFilterCatalog.so.1.2025.09.2 lib/libRDKitCatalogs.so.1.2025.09.2 lib/libRDKitFileParsers.so.1.2025.09.2 lib/libRDKitmaeparser.so.1.2025.09.2 lib/libRDKitRDChemDrawLib.so.1.2025.09.2 lib/libRDKitChemTransforms.so.1.2025.09.2 lib/libRDKitDepictor.so.1.2025.09.2 lib/libRDKitcoordgen.so.1.2025.09.2 lib/libRDKitMolAlign.so.1.2025.09.2 lib/libRDKitSmilesParse.so.1.2025.09.2 lib/libRDKitAlignment.so.1.2025.09.2 lib/libRDKitCIPLabeler.so.1.2025.09.2 lib/libRDKitChemDraw.so.1.2025.09.2 lib/libRDKitSubstructMatch.so.1.2025.09.2 lib/libRDKitGenericGroups.so.1.2025.09.2 lib/libRDKitSubgraphs.so.1.2025.09.2 lib/libRDKitPartialCharges.so.1.2025.09.2 lib/libRDKitMolTransforms.so.1.2025.09.2 lib/libRDKitGraphMol.so.1.2025.09.2 lib/libRDKitRDGeometryLib.so.1.2025.09.2 lib/libRDKitDataStructs.so.1.2025.09.2 lib/libRDKitRingDecomposerLib.so.1.2025.09.2 lib/libRDKitEigenSolvers.so.1.2025.09.2 lib/libRDKitRDGeneral.so.1.2025.09.2 /usr/local/lib/libboost_serialization.so.1.89.0 /usr/local/lib/libboost_iostreams.so.1.89.0 /usr/local/lib/libboost_random.so.1.89.0 /usr/local/lib/libboost_regex.so.1.89.0 -lpthread -ldl && : [ 99% 802/804] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitSubstructLibrary.so.1.2025.09.2 lib/libRDKitSubstructLibrary.so.1 lib/libRDKitSubstructLibrary.so && : [ 99% 803/804] /usr/local/bin/cmake -E cmake_symlink_library lib/libRDKitSynthonSpaceSearch.so.1.2025.09.2 lib/libRDKitSynthonSpaceSearch.so.1 lib/libRDKitSynthonSpaceSearch.so && : [ 99% 804/804] : && /usr/local/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -pthread -shared -L/usr/local/lib -Xlinker --dependency-file=Code/GraphMol/SynthonSpaceSearch/Wrap/CMakeFiles/rdSynthonSpaceSearch.dir/link.d -shared -o rdkit/Chem/rdSynthonSpaceSearch.so Code/GraphMol/SynthonSpaceSearch/Wrap/CMakeFiles/rdSynthonSpaceSearch.dir/rdSynthonSpaceSearch.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/rdkit/work/.build/lib:/usr/local/lib: lib/libRDKitSynthonSpaceSearch.so.1.2025.09.2 lib/libRDKitRDBoost.so.1.2025.09.2 lib/libRDKitRascalMCES.so.1.2025.09.2 lib/libRDKitGeneralizedSubstruct.so.1.2025.09.2 lib/libRDKitMolEnumerator.so.1.2025.09.2 lib/libRDKitTautomerQuery.so.1.2025.09.2 lib/libRDKitMolStandardize.so.1.2025.09.2 lib/libRDKitChemReactions.so.1.2025.09.2 lib/libRDKitFingerprints.so.1.2025.09.2 lib/libRDKitFilterCatalog.so.1.2025.09.2 lib/libRDKitCatalogs.so.1.2025.09.2 lib/libRDKitDescriptors.so.1.2025.09.2 lib/libRDKitFileParsers.so.1.2025.09.2 lib/libRDKitmaeparser.so.1.2025.09.2 lib/libRDKitRDChemDrawLib.so.1.2025.09.2 lib/libRDKitChemTransforms.so.1.2025.09.2 lib/libRDKitDepictor.so.1.2025.09.2 lib/libRDKitcoordgen.so.1.2025.09.2 lib/libRDKitMolAlign.so.1.2025.09.2 lib/libRDKitSmilesParse.so.1.2025.09.2 lib/libRDKitAlignment.so.1.2025.09.2 lib/libRDKitCIPLabeler.so.1.2025.09.2 lib/libRDKitChemDraw.so.1.2025.09.2 lib/libRDKitSubstructMatch.so.1.2025.09.2 lib/libRDKitGenericGroups.so.1.2025.09.2 lib/libRDKitSubgraphs.so.1.2025.09.2 lib/libRDKitPartialCharges.so.1.2025.09.2 lib/libRDKitMolTransforms.so.1.2025.09.2 lib/libRDKitGraphMol.so.1.2025.09.2 lib/libRDKitRDGeometryLib.so.1.2025.09.2 lib/libRDKitDataStructs.so.1.2025.09.2 lib/libRDKitRingDecomposerLib.so.1.2025.09.2 lib/libRDKitEigenSolvers.so.1.2025.09.2 /usr/local/lib/libboost_numpy311.so.1.89.0 /usr/local/lib/libboost_python311.so.1.89.0 /usr/local/lib/libboost_container.so.1.89.0 /usr/local/lib/libboost_graph.so.1.89.0 lib/libRDKitRDGeneral.so.1.2025.09.2 /usr/local/lib/libboost_serialization.so.1.89.0 /usr/local/lib/libboost_iostreams.so.1.89.0 /usr/local/lib/libboost_random.so.1.89.0 /usr/local/lib/libboost_regex.so.1.89.0 -lpthread -ldl && : [100% 804/804] : && /usr/local/libexec/ccache/c++ -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -mpopcnt -Wall -Wextra -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wno-format -Wno-logical-op-parentheses -fPIC -O2 -pipe -D_GNU_SOURCE -fstack-protector-strong -fno-strict-aliasing -D_GNU_SOURCE -DNDEBUG -pthread -shared -L/usr/local/lib -Xlinker --dependency-file=Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/link.d -shared -o rdkit/Chem/rdSubstructLibrary.so 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lib/libRDKitAlignment.so.1.2025.09.2 lib/libRDKitFingerprints.so.1.2025.09.2 lib/libRDKitCIPLabeler.so.1.2025.09.2 lib/libRDKitSubgraphs.so.1.2025.09.2 lib/libRDKitSubstructMatch.so.1.2025.09.2 lib/libRDKitGenericGroups.so.1.2025.09.2 lib/libRDKitSmilesParse.so.1.2025.09.2 lib/libRDKitGraphMol.so.1.2025.09.2 lib/libRDKitRDGeometryLib.so.1.2025.09.2 lib/libRDKitRingDecomposerLib.so.1.2025.09.2 lib/libRDKitCatalogs.so.1.2025.09.2 lib/libRDKitDataStructs.so.1.2025.09.2 /usr/local/lib/libboost_numpy311.so.1.89.0 /usr/local/lib/libboost_python311.so.1.89.0 /usr/local/lib/libboost_container.so.1.89.0 /usr/local/lib/libboost_graph.so.1.89.0 lib/libRDKitRDGeneral.so.1.2025.09.2 /usr/local/lib/libboost_serialization.so.1.89.0 /usr/local/lib/libboost_iostreams.so.1.89.0 /usr/local/lib/libboost_random.so.1.89.0 /usr/local/lib/libboost_regex.so.1.89.0 -lpthread -ldl && : =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> rdkit-2025.09.2 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> rdkit-2025.09.2 depends on package: py311-pillow>=7.0.0 - not found ===> Installing existing package /packages/All/py311-pillow-11.3.0_2.pkg [pkg.DaveG.ca] Installing py311-pillow-11.3.0_2... [pkg.DaveG.ca] `-- Installing jpeg-turbo-3.1.3... [pkg.DaveG.ca] `-- Extracting jpeg-turbo-3.1.3: .......... done [pkg.DaveG.ca] `-- Installing lcms2-2.18... [pkg.DaveG.ca] | `-- Installing tiff-4.7.1... [pkg.DaveG.ca] | | `-- Installing jbigkit-2.1_3... [pkg.DaveG.ca] | | `-- Extracting jbigkit-2.1_3: .......... done [pkg.DaveG.ca] | | `-- Installing lerc-4.0.0... [pkg.DaveG.ca] | | `-- Extracting lerc-4.0.0: ..... done [pkg.DaveG.ca] | | `-- Installing libdeflate-1.25... [pkg.DaveG.ca] | | `-- Extracting libdeflate-1.25: .......... done [pkg.DaveG.ca] | `-- Extracting tiff-4.7.1: .......... done [pkg.DaveG.ca] `-- Extracting lcms2-2.18: .......... done [pkg.DaveG.ca] `-- Installing libavif-1.3.0_3... [pkg.DaveG.ca] | `-- Installing aom-3.13.1... [pkg.DaveG.ca] | | `-- Installing vmaf-3.0.0... [pkg.DaveG.ca] | | `-- Extracting vmaf-3.0.0: .......... done [pkg.DaveG.ca] | `-- Extracting aom-3.13.1: .......... done [pkg.DaveG.ca] | `-- Installing dav1d-1.5.3_1... [pkg.DaveG.ca] | `-- Extracting dav1d-1.5.3_1: .......... done [pkg.DaveG.ca] | `-- Installing gdk-pixbuf2-2.44.1... [pkg.DaveG.ca] | | `-- Installing libxml2-2.15.2... [pkg.DaveG.ca] | | `-- Extracting libxml2-2.15.2: .......... done [pkg.DaveG.ca] | | `-- Installing shared-mime-info-2.4_2... [pkg.DaveG.ca] | | `-- Extracting shared-mime-info-2.4_2: ......... done [pkg.DaveG.ca] | `-- Extracting gdk-pixbuf2-2.44.1: .......... done [pkg.DaveG.ca] | `-- Installing libyuv-0.0.1903... [pkg.DaveG.ca] | `-- Extracting libyuv-0.0.1903: .......... done [pkg.DaveG.ca] `-- Extracting libavif-1.3.0_3: .......... done [pkg.DaveG.ca] `-- Installing libimagequant-4.4.1_2... [pkg.DaveG.ca] `-- Extracting libimagequant-4.4.1_2: ...... done [pkg.DaveG.ca] `-- Installing libraqm-0.10.3... [pkg.DaveG.ca] | `-- Installing fribidi-1.0.16... [pkg.DaveG.ca] | `-- Extracting fribidi-1.0.16: .......... done [pkg.DaveG.ca] | `-- Installing harfbuzz-12.3.2... [pkg.DaveG.ca] | | `-- Installing graphite2-1.3.14... [pkg.DaveG.ca] | | `-- Extracting graphite2-1.3.14: .......... done [pkg.DaveG.ca] | `-- Extracting harfbuzz-12.3.2: .......... done [pkg.DaveG.ca] `-- Extracting libraqm-0.10.3: .......... done [pkg.DaveG.ca] `-- Installing openjpeg-2.5.4_2... [pkg.DaveG.ca] `-- Extracting openjpeg-2.5.4_2: .......... done [pkg.DaveG.ca] `-- Installing py311-olefile-0.46_1... [pkg.DaveG.ca] `-- Extracting py311-olefile-0.46_1: .......... done [pkg.DaveG.ca] `-- Installing py311-tkinter-3.11.15_11... [pkg.DaveG.ca] | `-- Installing tcl86-8.6.17... [pkg.DaveG.ca] | `-- Extracting tcl86-8.6.17: .......... done [pkg.DaveG.ca] | `-- Installing tk86-8.6.17... [pkg.DaveG.ca] | | `-- Installing libXScrnSaver-1.2.4_1... [pkg.DaveG.ca] | | `-- Extracting libXScrnSaver-1.2.4_1: .......... done [pkg.DaveG.ca] | | `-- Installing libXft-2.3.8... [pkg.DaveG.ca] | | `-- Extracting libXft-2.3.8: .......... done [pkg.DaveG.ca] | `-- Extracting tk86-8.6.17: .......... done [pkg.DaveG.ca] `-- Extracting py311-tkinter-3.11.15_11: ...... done [pkg.DaveG.ca] `-- Installing webp-1.6.0... [pkg.DaveG.ca] | `-- Installing giflib-5.2.2... [pkg.DaveG.ca] | `-- Extracting giflib-5.2.2: .......... done [pkg.DaveG.ca] `-- Extracting webp-1.6.0: .......... done [pkg.DaveG.ca] Extracting py311-pillow-11.3.0_2: .......... done ==> Running trigger: gdk-pixbuf-query-loaders.ucl Generating gdk-pixbuf modules cache ==> Running trigger: shared-mime-info.ucl Building the Shared MIME-Info database cache ===== Message from libraqm-0.10.3: -- ===> NOTICE: The libraqm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> rdkit-2025.09.2 depends on package: py311-pillow>=7.0.0 - found ===> Returning to build of rdkit-2025.09.2 ===> rdkit-2025.09.2 depends on package: py311-matplotlib>0 - not found ===> Installing existing package /packages/All/py311-matplotlib-3.10.8.pkg [pkg.DaveG.ca] Installing py311-matplotlib-3.10.8... [pkg.DaveG.ca] `-- Installing py311-contourpy-1.3.3... [pkg.DaveG.ca] `-- Extracting py311-contourpy-1.3.3: .......... done [pkg.DaveG.ca] `-- Installing py311-cycler-0.12.1... [pkg.DaveG.ca] `-- Extracting py311-cycler-0.12.1: ......... done [pkg.DaveG.ca] `-- Installing py311-fonttools-4.61.1_1... [pkg.DaveG.ca] | `-- Installing py311-brotli-1.2.0... [pkg.DaveG.ca] | `-- Extracting py311-brotli-1.2.0: ......... done [pkg.DaveG.ca] | `-- Installing py311-lxml-6.0.2... [pkg.DaveG.ca] | | `-- Installing libxslt-1.1.45... [pkg.DaveG.ca] | | `-- Installing libgcrypt-1.12.0_1... [pkg.DaveG.ca] | | | `-- Installing libgpg-error-1.59... [pkg.DaveG.ca] | | | `-- Extracting libgpg-error-1.59: .......... done [pkg.DaveG.ca] | | `-- Extracting libgcrypt-1.12.0_1: .......... done [pkg.DaveG.ca] | | `-- Extracting libxslt-1.1.45: .......... done [pkg.DaveG.ca] | `-- Extracting py311-lxml-6.0.2: .......... done [pkg.DaveG.ca] | `-- Installing py311-unicodedata2-17.0.1... [pkg.DaveG.ca] | `-- Extracting py311-unicodedata2-17.0.1: ...... done [pkg.DaveG.ca] | `-- Installing py311-zopfli-0.4.1... [pkg.DaveG.ca] | | `-- Installing zopfli-1.0.3_1... [pkg.DaveG.ca] | | `-- Extracting zopfli-1.0.3_1: .......... done [pkg.DaveG.ca] | `-- Extracting py311-zopfli-0.4.1: .......... done [pkg.DaveG.ca] `-- Extracting py311-fonttools-4.61.1_1: .......... done [pkg.DaveG.ca] `-- Installing py311-kiwisolver-1.5.0,1... [pkg.DaveG.ca] `-- Extracting py311-kiwisolver-1.5.0,1: .......... done [pkg.DaveG.ca] `-- Installing py311-pyparsing-3.3.2... [pkg.DaveG.ca] `-- Extracting py311-pyparsing-3.3.2: .......... done [pkg.DaveG.ca] `-- Installing py311-python-dateutil-2.9.0... [pkg.DaveG.ca] | `-- Installing py311-six-1.17.0... [pkg.DaveG.ca] | `-- Extracting py311-six-1.17.0: ........ done [pkg.DaveG.ca] `-- Extracting py311-python-dateutil-2.9.0: .......... done [pkg.DaveG.ca] `-- Installing qhull-8.0.2_3,1... [pkg.DaveG.ca] `-- Extracting qhull-8.0.2_3,1: .......... done [pkg.DaveG.ca] Extracting py311-matplotlib-3.10.8: .......... done ===> rdkit-2025.09.2 depends on package: py311-matplotlib>0 - found ===> Returning to build of rdkit-2025.09.2 ===> rdkit-2025.09.2 depends on package: py311-reportlab>0 - not found ===> Installing existing package /packages/All/py311-reportlab-4.4.3_1.pkg [pkg.DaveG.ca] Installing py311-reportlab-4.4.3_1... [pkg.DaveG.ca] `-- Installing adobe-cmaps-20051217_4... [pkg.DaveG.ca] | `-- Installing mkfontscale-1.2.3... [pkg.DaveG.ca] | | `-- Installing libfontenc-1.1.9... [pkg.DaveG.ca] | | `-- Extracting libfontenc-1.1.9: ...... done [pkg.DaveG.ca] | `-- Extracting mkfontscale-1.2.3: .... done [pkg.DaveG.ca] `-- Extracting adobe-cmaps-20051217_4: .......... done [pkg.DaveG.ca] Extracting py311-reportlab-4.4.3_1: .......... done ===> rdkit-2025.09.2 depends on package: py311-reportlab>0 - found ===> Returning to build of rdkit-2025.09.2 ===> rdkit-2025.09.2 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for rdkit-2025.09.2 ===> Generating temporary packing list [ 50% 1/2] cd /wrkdirs/usr/ports/science/rdkit/work/.build/External/INCHI-API && /usr/local/bin/cmake -E copy /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/External/INCHI-API/python/noinchi.py /wrkdirs/usr/ports/science/rdkit/work/rdkit-Release_2025_09_2/rdkit/Chem/inchi.py [ 50% 2/2] cd /wrkdirs/usr/ports/science/rdkit/work/.build && /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/SimDivFilters -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/SimDivFilters/__init__.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/SimDivFilters/SimilarityPickers.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/MLUtils -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/MLUtils/__init__.py -- 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Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/sping/PIL/pilfonts/metrics.dat -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/sping/PIL/pilfonts/times-12.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/sping/PIL/pilfonts/symbol-8.pil -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/sping/PIL/pilfonts/courier-12.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/sping/PIL/pilfonts/symbol-18.pbm -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pil -- Installing: 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-- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/CoordGen.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdCoordGen.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdCoordGen.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRingDecomposerLib.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRingDecomposerLib.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRingDecomposerLib.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRingDecomposerLib.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRingDecomposerLib.so.1.2025.09.2 -- Up-to-date: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRingDecomposerLib.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRingDecomposerLib.so.1.2025.09.2" to "/usr/local/lib" -- Up-to-date: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRingDecomposerLib.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RingDecomposerLib.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitga.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitga.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitga.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitga.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitpubchem_align3d.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitpubchem_align3d.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitpubchem_align3d.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitpubchem_align3d.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitPubChemShape.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitPubChemShape.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitPubChemShape.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitPubChemShape.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/PubChemShape.hpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdShapeAlign.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdShapeAlign.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemDraw.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemDraw.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemDraw.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemDraw.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemDraw.so.1.2025.09.2 -- Up-to-date: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemDraw.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemDraw.so.1.2025.09.2" to "/usr/local/lib" -- Up-to-date: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemDraw.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libexpat.a -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDChemDrawLib.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDChemDrawLib.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDChemDrawLib.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDChemDrawLib.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDChemDrawReactionLib.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDChemDrawReactionLib.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDChemDrawReactionLib.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDChemDrawReactionLib.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDChemDrawLib.so.1.2025.09.2 -- Up-to-date: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDChemDrawLib.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDChemDrawLib.so.1.2025.09.2" to "/usr/local/lib" -- Up-to-date: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDChemDrawLib.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDChemDrawReactionLib.so.1.2025.09.2 -- Up-to-date: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDChemDrawReactionLib.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDChemDrawReactionLib.so.1.2025.09.2" to "/usr/local/lib" -- Up-to-date: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDChemDrawReactionLib.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/chemdraw.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/chemdrawreaction.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdChemDraw.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdChemDraw.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeneral.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeneral.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeneral.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeneral.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/Exceptions.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/BadFileException.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/BoostStartInclude.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/BoostEndInclude.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/ControlCHandler.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/Dict.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/FileParseException.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/Invariant.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDAny.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDValue.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDValue-doublemagic.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDValue-taggedunion.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDLog.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDProps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDThreads.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/StreamOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/types.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/utils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/versions.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDConfig.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/LocaleSwitcher.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/Ranking.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/hanoiSort.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/RDExportMacros.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/export.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/test.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/ConcurrentQueue.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/BetterEnums.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/enum.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/hash -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/hash/hash_fwd.hpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/hash/extensions.hpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/hash/detail -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/hash/detail/float_functions.hpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/hash/detail/hash_float.hpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDGeneral/hash/hash.hpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDBoost.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDBoost.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDBoost.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDBoost.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDBoost/Wrap.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDBoost/PySequenceHolder.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDBoost/list_indexing_suite.hpp -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDBoost/python.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDBoost/boost_numpy.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDBoost/python_streambuf.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDBoost/pyint_api.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/rdBase.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/rdBase.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDStreams.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDStreams.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDStreams.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDStreams.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/RDStreams/streams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDataStructs.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDataStructs.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDataStructs.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDataStructs.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/base64.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/BitOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/BitVect.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/BitVects.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/BitVectUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/DatastructsException.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/DatastructsStreamOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/DiscreteDistMat.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/DiscreteValueVect.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/RealValueVect.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/ExplicitBitVect.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/SparseBitVect.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/SparseIntVect.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/FPBReader.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataStructs/MultiFPBReader.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/DataStructs/cDataStructs.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/DataStructs/cDataStructs.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeometryLib.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeometryLib.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeometryLib.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRDGeometryLib.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/Grid3D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/GridUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/point.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/Transform2D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/Transform3D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/Transform.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/UniformGrid3D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/UniformRealValueGrid3D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Geometry/Utils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Geometry/rdGeometry.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Geometry/rdGeometry.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAlignment.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAlignment.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAlignment.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAlignment.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/Alignment/AlignPoints.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Numerics/rdAlignment.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Numerics/rdAlignment.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitEigenSolvers.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitEigenSolvers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitEigenSolvers.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitEigenSolvers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitOptimizer.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitOptimizer.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitOptimizer.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitOptimizer.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/Optimizer/BFGSOpt.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/Matrix.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/SquareMatrix.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/SymmMatrix.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/Vector.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Numerics/Conrec.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceField.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceField.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceField.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceField.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/Contrib.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/ForceField.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/AngleConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/AngleConstraints.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/DistanceConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/DistanceConstraints.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/PositionConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/TorsionConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/AngleBend.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/BondStretch.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/Contribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/DistanceConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/AngleConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/TorsionConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/PositionConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/Nonbonded.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/Params.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/Utils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/Inversion.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/Inversions.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/UFF/TorsionAngle.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/AngleBend.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/BondStretch.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/StretchBend.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/OopBend.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/TorsionAngle.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/Nonbonded.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/Contribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/DistanceConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/AngleConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/TorsionConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/PositionConstraint.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ForceField/MMFF/Params.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ForceField/rdForceField.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ForceField/rdForceField.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeometry.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeometry.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeometry.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeometry.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/BoundsMatrix.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/ChiralSet.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/ChiralViolationContribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/DistGeomUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/DistViolationContribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/FourthDimContribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DistGeom/TriangleSmooth.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/DistanceGeometry/DistGeom.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/DistanceGeometry/DistGeom.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCatalogs.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCatalogs.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCatalogs.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCatalogs.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Catalogs/CatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Catalogs/Catalog.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Catalogs/CatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGraphMol.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGraphMol.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGraphMol.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGraphMol.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Atom.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/atomic_data.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/AtomIterators.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Atropisomers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Bond.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/BondIterators.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Canon.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Chirality.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Conformer.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/details.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/GraphMol.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolPickler.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/PeriodicTable.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/QueryAtom.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/QueryBond.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/QueryOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RDKitBase.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RDKitQueries.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Resonance.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RingInfo.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Rings.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ROMol.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RWMol.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SanitException.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstanceGroup.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/StereoGroup.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MonomerInfo.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/new_canon.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolBundle.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSmilesParse.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSmilesParse.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSmilesParse.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSmilesParse.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmilesParse.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SmilesParse/CanonicalizeStereoGroups.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmilesJSONParsers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDepictor.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDepictor.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDepictor.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDepictor.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Depictor/DepictUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Depictor/RDDepictor.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdDepictor.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdDepictor.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMarvinParser.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMarvinParser.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMarvinParser.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMarvinParser.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MarvinParse/MarvinParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFileParsers.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFileParsers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFileParsers.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFileParsers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/CDXMLParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/FileParsers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/FileParserUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/FileWriters.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MolSupplier.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MolSupplier.v1API.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MolWriters.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/SequenceParsers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/SequenceWriters.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/GeneralFileReader.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MultithreadedMolSupplier.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MultithreadedSmilesMolSupplier.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/MultithreadedSDMolSupplier.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FileParsers/PNGParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructMatch.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructMatch.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructMatch.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructMatch.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Substruct/SubstructMatch.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Substruct/SubstructUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGenericGroups.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGenericGroups.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGenericGroups.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGenericGroups.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/GenericGroups/GenericGroups.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemReactions.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemReactions.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemReactions.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemReactions.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Reaction.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/PreprocessRxn.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/SanitizeRxn.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/Enumerate.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerateBase.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerateTypes.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerationPickler.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerationStrategyBase.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/CartesianProduct.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/RandomSample.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/RandomSampleAllBBs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdChemReactions.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdChemReactions.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemTransforms.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemTransforms.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemTransforms.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemTransforms.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ChemTransforms/MolFragmenterJSONParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTautomerQuery.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTautomerQuery.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTautomerQuery.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTautomerQuery.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/TautomerQuery/TautomerQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdTautomerQuery.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdTautomerQuery.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubgraphs.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubgraphs.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubgraphs.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubgraphs.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Subgraphs/Subgraphs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFilterCatalog.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFilterCatalog.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFilterCatalog.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFilterCatalog.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdfiltercatalog.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdfiltercatalog.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFragCatalog.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFragCatalog.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFragCatalog.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFragCatalog.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragCatParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdfragcatalog.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdfragcatalog.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDescriptors.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDescriptors.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDescriptors.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDescriptors.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/Crippen.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/BCUT.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/Lipinski.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MolDescriptors.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MolSurf.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MQN.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/Property.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/USRDescriptor.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/AtomFeat.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/OxidationNumbers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/DCLV.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MolDescriptors3D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/EEM.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/PBF.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/PMI.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/AUTOCORR3D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/RDF.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/MORSE.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/GETAWAY.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/WHIM.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Descriptors/CoulombMat.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolDescriptors.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolDescriptors.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFingerprints.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFingerprints.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFingerprints.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFingerprints.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/AtomPairs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/Fingerprints.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/MACCS.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/MHFP.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/FingerprintGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/AtomPairGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/MorganGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/RDKitFPGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/TopologicalTorsionGenerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Fingerprints/FingerprintUtil.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdFingerprintGenerator.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdFingerprintGenerator.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMHFPFingerprint.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMHFPFingerprint.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitPartialCharges.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitPartialCharges.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitPartialCharges.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitPartialCharges.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdPartialCharges.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdPartialCharges.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolTransforms.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolTransforms.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolTransforms.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolTransforms.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolTransforms/MolTransforms.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolTransforms.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolTransforms.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceFieldHelpers.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceFieldHelpers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceFieldHelpers.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitForceFieldHelpers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/FFConvenience.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleContribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdForceFieldHelpers.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdForceFieldHelpers.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeomHelpers.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeomHelpers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeomHelpers.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDistGeomHelpers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdDistGeom.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdDistGeom.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolAlign.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolAlign.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolAlign.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolAlign.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitO3AAlign.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitO3AAlign.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitO3AAlign.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitO3AAlign.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolAlign/AlignMolecules.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolAlign.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolAlign.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolChemicalFeatures.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolChemicalFeatures.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolChemicalFeatures.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolChemicalFeatures.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolChemicalFeatures.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolChemicalFeatures.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitShapeHelpers.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitShapeHelpers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitShapeHelpers.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitShapeHelpers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdShapeHelpers.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdShapeHelpers.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolCatalog.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolCatalog.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolCatalog.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolCatalog.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolCatalog/MolCatalog.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolCatalog.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolCatalog.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DJS.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DHelpers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolDraw2D.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DCairo.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitFMCS.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FMCS/FMCS.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/FMCS/Graph.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdFMCS.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdFMCS.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolHash.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolHash/MolHash.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolHash/nmmolhash.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolHash.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolHash.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMMPA.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MMPA/MMPA.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMMPA.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMMPA.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRascalMCES.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRascalMCES.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRascalMCES.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRascalMCES.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RascalMCES/RascalMCES.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RascalMCES/RascalOptions.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RascalMCES/RascalClusterOptions.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RascalMCES/RascalResult.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdRascalMCES.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdRascalMCES.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSynthonSpaceSearch.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSynthonSpaceSearch.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSynthonSpaceSearch.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSynthonSpaceSearch.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpace.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSet.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SynthonSpaceSearch/Synthon.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SynthonSpaceSearch/SearchResults.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpaceSearcher.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpaceSubstructureSearcher.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpaceFingerprintSearcher.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SynthonSpaceSearch/SynthonSpaceRascalSearcher.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdSynthonSpaceSearch.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdSynthonSpaceSearch.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitEnumerateStereoisomers.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitEnumerateStereoisomers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitEnumerateStereoisomers.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitEnumerateStereoisomers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/EnumerateStereoisomers/EnumerateStereoisomers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/EnumerateStereoisomers/Flippers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdEnumerateStereoisomers.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdEnumerateStereoisomers.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitCIPLabeler.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/CIPLabeler/CIPLabeler.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/CIPLabeler/TooManyNodesException.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdCIPLabeler.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdCIPLabeler.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitDeprotect.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Deprotect/Deprotect.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdDeprotect.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdDeprotect.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitReducedGraphs.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdReducedGraphs.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdReducedGraphs.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitTrajectory.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Trajectory/Snapshot.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Trajectory/Trajectory.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSubstructLibrary.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrarySerialization.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/PatternFactory.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdSubstructLibrary.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdSubstructLibrary.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitRGroupDecomposition.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecompParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecompJSONParsers.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdRGroupDecomposition.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdRGroupDecomposition.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInterchange.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolInterchange/MolInterchange.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolInterchange/details.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolInterchange.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolInterchange.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSLNParse.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNAttribs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNParse.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNParseOps.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdSLNParse.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdSLNParse.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdchem.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdchem.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdmolops.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdmolops.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdqueries.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdqueries.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdmolfiles.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdmolfiles.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdtrajectory.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdtrajectory.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolStandardize.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Pipeline.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/MolStandardize.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Metal.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Normalize.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Validate.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Charge.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Tautomer.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Fragment.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitScaffoldNetwork.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/ScaffoldNetwork/ScaffoldNetwork.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/Scaffolds/rdScaffoldNetwork.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/Scaffolds/rdScaffoldNetwork.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolEnumerator.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolEnumerator/MolEnumerator.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolEnumerator/LinkNode.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolEnumerator.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolEnumerator.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitAbbreviations.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/Abbreviations/Abbreviations.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdAbbreviations.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdAbbreviations.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGeneralizedSubstruct.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGeneralizedSubstruct.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGeneralizedSubstruct.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitGeneralizedSubstruct.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/GeneralizedSubstruct/XQMol.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdGeneralizedSubstruct.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdGeneralizedSubstruct.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolProcessing.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolProcessing.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolProcessing.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolProcessing.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolProcessing/MolProcessing.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolProcessing.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMolProcessing.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInteractionFields.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInteractionFields.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInteractionFields.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitMolInteractionFields.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/GraphMol/MolInteractionFields/MIFDescriptors.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMIF.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdMIF.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/AndQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/EqualityQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/GreaterEqualQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/GreaterQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/LessEqualQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/LessQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/NullQueryAlgebra.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/OrQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/Query.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/QueryObjects.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/RangeQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/SetQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Query/XOrQuery.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/Features/Feature.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSimDivPickers.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSimDivPickers.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSimDivPickers.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitSimDivPickers.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/DistPicker.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/LeaderPicker.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/SimDivPickers/MaxMinPicker.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKithc.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKithc.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKithc.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKithc.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Cluster/Clustering.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Cluster/Clustering.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitInfoTheory.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Data/cQuantize.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/ML/Data/cQuantize.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so.1.2025.09.2 -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so.1 -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so.1.2025.09.2" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/libRDKitChemicalFeatures.so -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ChemicalFeatures/ChemicalFeature.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdChemicalFeatures.so -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/Chem/rdChemicalFeatures.so" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/python3.11/site-packages/rdkit/RDPaths.py -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkit/rdkit-targets.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkit/rdkit-targets-release.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkit/rdkit-config.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkit/rdkit-config-version.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkitpython/rdkitpython-targets.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkitpython/rdkitpython-targets-release.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkitpython/rdkitpython-config.cmake -- Installing: /wrkdirs/usr/ports/science/rdkit/work/stage/usr/local/lib/cmake/rdkitpython/rdkitpython-config-version.cmake ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-03-18T10:36:10+0000' 'PKG_NOTE_ports_top_git_hash=8c988f802ea2' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=93d9572c0a46' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for rdkit-2025.09.2 ===> Building rdkit-2025.09.2 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for rdkit-2025.09.2 build of science/rdkit | rdkit-2025.09.2 ended at Wed Mar 18 06:37:33 EDT 2026 build time: 00:01:24