=>> Building biology/py-python-libsbml build started at Sun Nov 9 22:38:09 EST 2025 port directory: /usr/ports/biology/py-python-libsbml package name: py311-python-libsbml-5.20.4_1 building for: FreeBSD pkg.DaveG.ca 15.0-ALPHA3 FreeBSD 15.0-ALPHA3 1500064 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 784 Mar 10 2025 /usr/ports/biology/py-python-libsbml/Makefile Ports top last git commit: ec159283c191 Ports top unclean checkout: no Port dir last git commit: 4f0eba1efd73 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1500064 Job Id: 07 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500064 UNAME_v=FreeBSD 15.0-ALPHA3 1500064 UNAME_r=15.0-ALPHA3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/07/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_15_c_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- CMAKE_BUILD_PARALLEL_LEVEL=64 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/python-libsbml" EXAMPLESDIR="share/examples/python-libsbml" DATADIR="share/python-libsbml" WWWDIR="www/python-libsbml" ETCDIR="etc/python-libsbml" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/python-libsbml DOCSDIR=/usr/local/share/doc/python-libsbml EXAMPLESDIR=/usr/local/share/examples/python-libsbml WWWDIR=/usr/local/www/python-libsbml ETCDIR=/usr/local/etc/python-libsbml --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-python-libsbml-5.20.4_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.4.2_1.pkg [pkg.DaveG.ca] Installing pkg-2.4.2_1... [pkg.DaveG.ca] Extracting pkg-2.4.2_1: .......... done ===> py311-python-libsbml-5.20.4_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-python-libsbml-5.20.4_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-python-libsbml-5.20.4_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-python-libsbml-5.20.4_1 for building => SHA256 Checksum OK for python-libsbml-5.20.4.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-python-libsbml-5.20.4_1 for building ===> Extracting for py311-python-libsbml-5.20.4_1 => SHA256 Checksum OK for python-libsbml-5.20.4.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-python-libsbml-5.20.4_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-python-libsbml-5.20.4_1 depends on executable: cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.9.pkg [pkg.DaveG.ca] Installing cmake-core-3.31.9... [pkg.DaveG.ca] `-- Installing expat-2.7.3... [pkg.DaveG.ca] `-- Extracting expat-2.7.3: .......... done [pkg.DaveG.ca] `-- Installing jsoncpp-1.9.6_1... [pkg.DaveG.ca] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg.DaveG.ca] `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | `-- Installing libunistring-1.4.1... [pkg.DaveG.ca] | `-- Extracting libunistring-1.4.1: .......... done [pkg.DaveG.ca] `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] `-- Installing libuv-1.51.0... [pkg.DaveG.ca] `-- Extracting libuv-1.51.0: .......... done [pkg.DaveG.ca] `-- Installing rhash-1.4.4_1... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.23.1... [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg.DaveG.ca] `-- Extracting rhash-1.4.4_1: .......... done [pkg.DaveG.ca] Extracting cmake-core-3.31.9: .......... done ===> py311-python-libsbml-5.20.4_1 depends on executable: cmake - found ===> Returning to build of py311-python-libsbml-5.20.4_1 ===> py311-python-libsbml-5.20.4_1 depends on executable: swig - not found ===> Installing existing package /packages/All/swig-4.3.1.pkg [pkg.DaveG.ca] Installing swig-4.3.1... [pkg.DaveG.ca] `-- Installing pcre2-10.46... [pkg.DaveG.ca] `-- Extracting pcre2-10.46: .......... done [pkg.DaveG.ca] Extracting swig-4.3.1: .......... done ===> py311-python-libsbml-5.20.4_1 depends on executable: swig - found ===> Returning to build of py311-python-libsbml-5.20.4_1 ===> py311-python-libsbml-5.20.4_1 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [pkg.DaveG.ca] Installing py311-setuptools-63.1.0_3... [pkg.DaveG.ca] `-- Installing python311-3.11.14... [pkg.DaveG.ca] | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | `-- Installing readline-8.3.1... [pkg.DaveG.ca] | `-- Extracting readline-8.3.1: .......... done [pkg.DaveG.ca] `-- Extracting python311-3.11.14: .......... done [pkg.DaveG.ca] Extracting py311-setuptools-63.1.0_3: .......... done ===== Message from python311-3.11.14: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-python-libsbml-5.20.4_1 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-python-libsbml-5.20.4_1 ===> py311-python-libsbml-5.20.4_1 depends on file: /usr/local/bin/python3.11 - found ===> py311-python-libsbml-5.20.4_1 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> py311-python-libsbml-5.20.4_1 depends on file: /usr/local/bin/ccache - found ===> Returning to build of py311-python-libsbml-5.20.4_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-python-libsbml-5.20.4_1 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/config/libtool.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/configure ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/libiconv/source/m4/libtool.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/libiconv/source/configure ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/libiconv/source/libcharset/m4/libtool.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/libiconv/source/libcharset/configure ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/libiconv/source/libcharset/build-aux/config.libpath ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/libiconv/source/build-aux/config.rpath ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/libiconv/source/build-aux/config.libpath Using libSBML from: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source Using VERSION.txt: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/VERSION.txt Creating: python-libsbml Version is: 5.20.4 building for python: 3.11.14 (main, Nov 8 2025, 22:14:56) [Clang 19.1.7 (https://github.com/llvm/llvm-project.git llvmorg-19.1.7-0-gcd7080 running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-python-libsbml-5.20.4_1 Using libSBML from: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source Using VERSION.txt: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/VERSION.txt Creating: python-libsbml Version is: 5.20.4 building for python: 3.11.14 (main, Nov 8 2025, 22:14:56) [Clang 19.1.7 (https://github.com/llvm/llvm-project.git llvmorg-19.1.7-0-gcd7080 running build running build_py running build_ext name: _libsbml.cpython-311.so build temp: build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311 extension name: _libsbml extension dir: build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/libsbml/_libsbml.cpython-311.so target_dir_path: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/libsbml target_lib_path: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/libsbml/_libsbml.cpython-311.so suffix: freebsd-15.0-ALPHA3-amd64-cpython-311 cwd: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4 name: _libsbml.cpython-311.so, tmp: build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311 compiling dependencies cmake /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies -DCMAKE_BUILD_TYPE=Release -DWITH_STATIC_RUNTIME=ON -DCMAKE_INSTALL_PREFIX=/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64 -DWITH_BZIP2=ON -DWITH_CHECK=OFF -DWITH_EXPAT=ON -DWITH_XERCES=OFF -DWITH_ICONV=OFF -DWITH_LIBXML=OFF -- The C compiler identification is Clang 19.1.7 -- The CXX compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done CMake Deprecation Warning at expat/expat/CMakeLists.txt:37 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Looking for dlfcn.h -- Looking for dlfcn.h - found -- Looking for fcntl.h -- Looking for fcntl.h - found -- Looking for inttypes.h -- Looking for inttypes.h - found -- Looking for memory.h -- Looking for memory.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stdlib.h -- Looking for stdlib.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for string.h -- Looking for string.h - found -- Looking for sys/stat.h -- Looking for sys/stat.h - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Looking for getpagesize -- Looking for getpagesize - found -- Looking for mmap -- Looking for mmap - found -- Looking for getrandom -- Looking for getrandom - found -- Looking for arc4random_buf -- Looking for arc4random_buf - found -- Looking for 4 include files stdlib.h, ..., float.h -- Looking for 4 include files stdlib.h, ..., float.h - found -- Performing Test HAVE_OFF_T -- Performing Test HAVE_OFF_T - Success -- Performing Test HAVE_SYSCALL_GETRANDOM -- Performing Test HAVE_SYSCALL_GETRANDOM - Success -- Performing Test FLAG_NO_STRICT_ALIASING -- Performing Test FLAG_NO_STRICT_ALIASING - Success -- Performing Test FLAG_VISIBILITY -- Performing Test FLAG_VISIBILITY - Success -- Looking for cos in m -- Looking for cos in m - found CMake Warning at /usr/local/share/cmake/Modules/CPack.cmake:510 (message): CPack.cmake has already been included!! Call Stack (most recent call first): expat/expat/CMakeLists.txt:897 (include) -- =========================================================================== -- -- Configuration -- Generator .................. Unix Makefiles -- Build type ................. Release -- Prefix ..................... /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64 -- Shared libraries ........... OFF -- Character type ............. char (UTF-8) -- Library name postfix ....... -- -- Build documentation ........ OFF -- Build examples ............. OFF -- Build fuzzers .............. OFF -- Build tests ................ OFF -- Build tools (xmlwf) ........ OFF -- Build pkg-config file ...... ON -- Install files .............. ON -- -- Features -- // Advanced options, changes not advised -- Attributes info .......... OFF -- Context bytes ............ 1024 -- DTD support .............. ON -- General entities ......... ON -- Large size ............... OFF -- Minimum size ............. OFF -- Namespace support ........ ON -- -- Entropy sources -- getrandom ................ 1 -- syscall SYS_getrandom .... 1 -- libbsd ................... OFF -- /dev/random .............. ON -- -- Continue with -- make -- sudo make install -- -- =========================================================================== -- Configuring done (10.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: WITH_ICONV -- Build files have been written to: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/build_dependencies_freebsd-15.0-ALPHA3-amd64 cmake --build . --target install --config Release -- [ 4%] Building C object expat/expat/CMakeFiles/expat.dir/lib/xmlparse.c.o [ 8%] Building C object zlib/CMakeFiles/zlib.dir/source/adler32.c.o [ 16%] Building C object bzip2/CMakeFiles/bz2.dir/blocksort.c.o [ 16%] Building C object bzip2/CMakeFiles/bz2.dir/bzlib.c.o [ 24%] Building C object bzip2/CMakeFiles/bz2.dir/compress.c.o [ 24%] Building C object expat/expat/CMakeFiles/expat.dir/lib/xmlrole.c.o [ 28%] Building C object expat/expat/CMakeFiles/expat.dir/lib/xmltok.c.o [ 32%] Building C object zlib/CMakeFiles/zlib.dir/source/trees.c.o [ 40%] Building C object zlib/CMakeFiles/zlib.dir/source/crc32.c.o [ 40%] Building C object zlib/CMakeFiles/zlib.dir/source/infback.c.o [ 48%] Building C object zlib/CMakeFiles/zlib.dir/source/inflate.c.o [ 48%] Building C object bzip2/CMakeFiles/bz2.dir/crctable.c.o [ 52%] Building C object zlib/CMakeFiles/zlib.dir/source/inftrees.c.o [ 56%] Building C object bzip2/CMakeFiles/bz2.dir/huffman.c.o [ 60%] Building C object bzip2/CMakeFiles/bz2.dir/decompress.c.o [ 64%] Building C object zlib/CMakeFiles/zlib.dir/source/compress.c.o [ 68%] Building C object zlib/CMakeFiles/zlib.dir/source/gzio.c.o [ 76%] Building C object bzip2/CMakeFiles/bz2.dir/randtable.c.o [ 76%] Building C object zlib/CMakeFiles/zlib.dir/source/inffast.c.o [ 80%] Building C object zlib/CMakeFiles/zlib.dir/source/zutil.c.o [ 84%] Building C object zlib/CMakeFiles/zlib.dir/source/uncompr.c.o [ 88%] Building C object zlib/CMakeFiles/zlib.dir/source/deflate.c.o /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/compress.c:22:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 22 | int ZEXPORT compress2 (dest, destLen, source, sourceLen, level) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/compress.c:62:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 62 | int ZEXPORT compress (dest, destLen, source, sourceLen) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/compress.c:75:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 75 | uLong ZEXPORT compressBound (sourceLen) | ^ 3 warnings generated. /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/uncompr.c:26:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 26 | int ZEXPORT uncompress (dest, destLen, source, sourceLen) | ^ 1 warning generated. /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/zutil.c:133:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 133 | const char * ZEXPORT zError(err) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/zutil.c:300:8: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 300 | voidpf zcalloc (opaque, items, size) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/zutil.c:310:7: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 310 | void zcfree (opaque, ptr) | ^ 3 warnings generated. /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/inftrees.c:32:5: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 32 | int inflate_table(type, lens, codes, table, bits, work) | ^ 1 warning generated. /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/crc32.c:219:23: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 219 | unsigned long ZEXPORT crc32(crc, buf, len) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/crc32.c:262:21: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 262 | local unsigned long crc32_little(crc, buf, len) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/crc32.c:302:21: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 302 | local unsigned long crc32_big(crc, buf, len) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/crc32.c:342:21: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 342 | local unsigned long gf2_matrix_times(mat, vec) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/crc32.c:359:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 359 | local void gf2_matrix_square(square, mat) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/crc32.c:370:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 370 | uLong ZEXPORT crc32_combine(crc1, crc2, len2) | ^ 6 warnings generated. /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/adler32.c:57:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 57 | uLong ZEXPORT adler32(adler, buf, len) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/adler32.c:128:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 128 | uLong ZEXPORT adler32_combine(adler1, adler2, len2) | ^ 2 warnings generated. /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/inffast.c:67:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 67 | void inflate_fast(strm, start) | ^ 1 warning generated. /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/infback.c:28:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 28 | int ZEXPORT inflateBackInit_(strm, windowBits, window, version, stream_size) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/infback.c:73:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 73 | local void fixedtables(state) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/infback.c:241:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 241 | int ZEXPORT inflateBack(strm, in, in_desc, out, out_desc) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/infback.c:614:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 614 | int ZEXPORT inflateBackEnd(strm) | ^ 4 warnings generated. /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:93:14: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 93 | local gzFile gz_open (path, mode, fd) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:208:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 208 | gzFile ZEXPORT gzopen (path, mode) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:219:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 219 | gzFile ZEXPORT gzdopen (fd, mode) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:234:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 234 | int ZEXPORT gzsetparams (file, level, strategy) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:261:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 261 | local int get_byte(s) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:288:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 288 | local void check_header(s) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:355:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 355 | local int destroy (s) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:394:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 394 | int ZEXPORT gzread (file, buf, len) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:503:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 503 | int ZEXPORT gzgetc(file) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:515:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 515 | int ZEXPORT gzungetc(c, file) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:540:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 540 | char * ZEXPORT gzgets(file, buf, len) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:559:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 559 | int ZEXPORT gzwrite (file, buf, len) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:678:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 678 | int ZEXPORT gzputc(file, c) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:693:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 693 | int ZEXPORT gzputs(file, s) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:705:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 705 | local int do_flush (file, flush) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:746:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 746 | int ZEXPORT gzflush (file, flush) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:767:17: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 767 | z_off_t ZEXPORT gzseek (file, offset, whence) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:857:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 857 | int ZEXPORT gzrewind (file) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:881:17: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 881 | z_off_t ZEXPORT gztell (file) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:891:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 891 | int ZEXPORT gzeof (file) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:908:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 908 | int ZEXPORT gzdirect (file) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:920:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 920 | local void putLong (file, x) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:935:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 935 | local uLong getLong (s) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:953:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 953 | int ZEXPORT gzclose (file) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:987:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 987 | const char * ZEXPORT gzerror (file, errnum) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/gzio.c:1017:14: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1017 | void ZEXPORT gzclearerr (file) | ^ 26 warnings generated. /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:382:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 382 | void _tr_init(s) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:411:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 411 | local void init_block(s) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:455:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 455 | local void pqdownheap(s, tree, k) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:490:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 490 | local void gen_bitlen(s, desc) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:577:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 577 | local void gen_codes (tree, max_code, bl_count) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:619:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 619 | local void build_tree(s, desc) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:707:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 707 | local void scan_tree (s, tree, max_code) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:752:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 752 | local void send_tree (s, tree, max_code) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:803:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 803 | local int build_bl_tree(s) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:838:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 838 | local void send_all_trees(s, lcodes, dcodes, blcodes) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:867:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 867 | void _tr_stored_block(s, buf, stored_len, eof) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:892:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 892 | void _tr_align(s) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:921:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 921 | void _tr_flush_block(s, buf, stored_len, eof) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:1022:5: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1022 | int _tr_tally (s, dist, lc) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:1072:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1072 | local void compress_block(s, ltree, dtree) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:1126:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1126 | local void set_data_type(s) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:1146:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1146 | local unsigned bi_reverse(code, len) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:1161:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1161 | local void bi_flush(s) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:1178:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1178 | local void bi_windup(s) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/trees.c:1197:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1197 | local void copy_block(s, buf, len, header) | ^ 20 warnings generated. /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:204:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 204 | int ZEXPORT deflateInit_(strm, level, version, stream_size) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:216:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 216 | int ZEXPORT deflateInit2_(strm, level, method, windowBits, memLevel, strategy, | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:315:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 315 | int ZEXPORT deflateSetDictionary (strm, dictionary, dictLength) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:357:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 357 | int ZEXPORT deflateReset (strm) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:393:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 393 | int ZEXPORT deflateSetHeader (strm, head) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:404:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 404 | int ZEXPORT deflatePrime (strm, bits, value) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:416:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 416 | int ZEXPORT deflateParams(strm, level, strategy) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:454:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 454 | int ZEXPORT deflateTune(strm, good_length, max_lazy, nice_length, max_chain) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:489:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 489 | uLong ZEXPORT deflateBound(strm, sourceLen) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:518:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 518 | local void putShortMSB (s, b) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:532:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 532 | local void flush_pending(strm) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:552:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 552 | int ZEXPORT deflate (strm, flush) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:859:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 859 | int ZEXPORT deflateEnd (strm) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:894:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 894 | int ZEXPORT deflateCopy (dest, source) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:956:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 956 | local int read_buf(strm, buf, size) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:986:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 986 | local void lm_init (s) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:1027:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1027 | local uInt longest_match(s, cur_match) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:1175:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1175 | local uInt longest_match_fast(s, cur_match) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:1266:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1266 | local void fill_window(s) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:1390:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1390 | local block_state deflate_stored(s, flush) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:1448:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1448 | local block_state deflate_fast(s, flush) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/deflate.c:1554:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1554 | local block_state deflate_slow(s, flush) | ^ 22 warnings generated. /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/inflate.c:103:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 103 | int ZEXPORT inflateReset(strm) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/inflate.c:128:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 128 | int ZEXPORT inflatePrime(strm, bits, value) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/inflate.c:144:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 144 | int ZEXPORT inflateInit2_(strm, windowBits, version, stream_size) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/inflate.c:187:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 187 | int ZEXPORT inflateInit_(strm, version, stream_size) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/inflate.c:205:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 205 | local void fixedtables(state) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/inflate.c:323:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 323 | local int updatewindow(strm, out) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/inflate.c:554:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 554 | int ZEXPORT inflate(strm, flush) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/inflate.c:1155:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1155 | int ZEXPORT inflateEnd(strm) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/inflate.c:1169:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1169 | int ZEXPORT inflateSetDictionary(strm, dictionary, dictLength) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/inflate.c:1211:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1211 | int ZEXPORT inflateGetHeader(strm, head) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/inflate.c:1239:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1239 | local unsigned syncsearch(have, buf, len) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/inflate.c:1262:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1262 | int ZEXPORT inflateSync(strm) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/inflate.c:1313:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1313 | int ZEXPORT inflateSyncPoint(strm) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_dependencies/zlib/source/inflate.c:1323:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1323 | int ZEXPORT inflateCopy(dest, source) | ^ 14 warnings generated. [ 92%] Linking C static library libzlib.a [ 92%] Built target zlib [ 96%] Linking C static library libbz2.a [ 96%] Built target bz2 [100%] Linking C static library libexpat.a [100%] Built target expat Install the project... -- Install configuration: "Release" -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/lib/libbz2.a -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/include/bzlib.h -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/include/bzip2/bzlib.h -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/include/expat_config.h -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/lib/libexpat.a -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/include/expat.h -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/include/expat_external.h -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/lib/pkgconfig/expat.pc -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/share/doc/expat/AUTHORS -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/share/doc/expat/changelog -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/lib/cmake/expat-2.6.2/expat-config.cmake -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/lib/cmake/expat-2.6.2/expat-config-version.cmake -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/lib/cmake/expat-2.6.2/expat.cmake -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/lib/cmake/expat-2.6.2/expat-release.cmake -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/lib/libzlib.a -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/include/zconf.h -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/include/zlib.h -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/include/zlib/zconf.h -- Installing: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/include/zlib/zlib.h cmake /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source -DCMAKE_BUILD_TYPE=Release -DWITH_STATIC_RUNTIME=ON -DWITH_EXPAT=ON -DWITH_LIBXML=OFF -DWITH_SWIG=ON -DWITH_ZLIB=ON -DWITH_PYTHON=ON -DPYTHON_EXECUTABLE=/usr/local/bin/python3.11 -DPYTHON_INCLUDE_DIR=/usr/local/include/python3.11 -DENABLE_COMP=ON -DENABLE_FBC=ON -DENABLE_LAYOUT=ON -DENABLE_QUAL=ON -DENABLE_GROUPS=ON -DENABLE_MULTI=ON -DENABLE_RENDER=ON -DENABLE_DISTRIB=ON -DENABLE_SPATIAL=ON -DPYTHON_USE_DYNAMIC_LOOKUP=ON -DLIBSBML_DEPENDENCY_DIR=/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64 -- The C compiler identification is Clang 19.1.7 -- The CXX compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found SWIG: /usr/local/bin/swig (found version "4.3.1") -- Performing Test EXPAT_EXPAT_TEST -- Performing Test EXPAT_EXPAT_TEST - Success -- Found EXPAT: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/lib/libexpat.a (found version "2.6.2") -- Looking for BZ2_bzCompressInit in /usr/lib/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib/libbz2.so - found -- Found BZ2: /usr/lib/libbz2.so (found version "1.0.8") -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) -- Found ZLIB: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/lib/libzlib.a CMake Warning at CMakeLists.txt:561 (message): The chosen zlib library does not appear to be valid because it is missing certain required symbols. Please check that is the correct zlib library. For details about the error, please see /CMakeFiles/CMakeError.log -- Looking for include file check.h -- Looking for include file check.h - not found -- Looking for include file expat.h -- Looking for include file expat.h - not found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for sqrt in m -- Looking for sqrt in m - found CMake Warning (dev) at src/bindings/python/CMakeLists.txt:36 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python3.11 (found version "3.11.14") CMake Warning (dev) at src/bindings/python/CMakeLists.txt:41 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonLibs: /usr/local/lib/libpython3.11.so (found version "3.11.14") -- ---------------------------------------------------------------------- libSBML version 5.20.4 ---------------------------------------------------------------------- More information and the latest version are available online at https://sbml.org/software/libsbml/ Please report problems using the issue tracker at https://github.com/sbmlteam/libsbml/issues To contact the developers directly, email libsbml-team@googlegroups.com Configured on host 'pkg.DaveG.ca' host type = FreeBSD host operating system = FreeBSD 15.0-ALPHA3 host CPU architecture = amd64 General build flags: CC = /usr/local/libexec/ccache/cc CXX = /usr/local/libexec/ccache/c++ CPPFLAGS = -DLINUX CFLAGS = -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fno-strict-aliasing -fPIC CXXFLAGS = -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fno-strict-aliasing -fPIC LDFLAGS = XML parser library configuration: XML library = expat CPPFLAGS for XML = -I/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/include LIBS for XML = /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/lib/libexpat.a Other libSBML configuration settings: Installation $prefix = /usr/local -- Value of $LD_LIBRARY_PATH = -- Using SWIG = /usr/local/bin/swig (Version 4.3.1) -- Using Python = /usr/local/bin/python3.11 -- Using C++ namespace ('libsbml') = no -- -- Build examples = no -- -- -- Support for SBML Level 3 Packages: -- SBML 'arrays' package = OFF -- SBML 'comp' package = ON -- SBML 'distrib' package = ON -- SBML 'dyn' package = OFF -- SBML 'fbc' package = ON -- SBML 'groups' package = ON -- SBML 'l3v2extendedmath' package = ON -- SBML 'layout' package = ON -- SBML 'multi' package = ON -- SBML 'qual' package = ON -- SBML 'render' package = ON -- SBML 'req' 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[-Wswitch] 242 | switch (type) { | ^~~~ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/sbml/packages/distrib/util/DistribToAnnotationConverter.cpp:299:11: warning: 144 enumeration values not handled in switch: 'AST_TIMES', 'AST_PLUS', 'AST_MINUS'... [-Wswitch] 299 | switch (type) { | ^~~~ 2 warnings generated. 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src/CMakeFiles/sbml-static.dir/sbml/packages/spatial/sbml/ListOfSampledVolumes.cpp.o [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/spatial/sbml/OrdinalMapping.cpp.o [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/spatial/sbml/ParametricObject.cpp.o [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/spatial/sbml/SampledField.cpp.o [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/spatial/sbml/SampledFieldGeometry.cpp.o [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/spatial/sbml/SpatialPoints.cpp.o [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/spatial/sbml/SampledVolume.cpp.o [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/spatial/sbml/TransformationComponent.cpp.o /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/sbml/packages/render/sbml/Style.cpp:564:12: warning: comparison of address of 'this->mGroup' not equal to a null pointer is always true [-Wtautological-pointer-compare] 564 | return (&mGroup != NULL); | ^~~~~~ ~~~~ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/sbml/packages/render/sbml/Style.cpp:1178:8: warning: comparison of address of 'this->mGroup' not equal to a null pointer is always true [-Wtautological-pointer-compare] 1178 | if (&mGroup != NULL) | ^~~~~~ ~~~~ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/sbml/packages/render/sbml/Style.cpp:1210:8: warning: comparison of address of 'this->mGroup' not equal to a null pointer is always true [-Wtautological-pointer-compare] 1210 | if (&mGroup != NULL) | ^~~~~~ ~~~~ 3 warnings generated. 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src/CMakeFiles/sbml-static.dir/sbml/xml/XMLNamespaces.cpp.o [ 98%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLMemoryBuffer.cpp.o [ 98%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLInputStream.cpp.o /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/sbml/compress/ioapi_mem.c:35:18: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 35 | voidpf ZCALLBACK fopen_mem_func (opaque, filename, mode) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/sbml/compress/ioapi_mem.c:62:18: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 62 | voidpf ZCALLBACK fopendisk_mem_func (opaque, stream, number_disk, mode) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/sbml/compress/ioapi_mem.c:72:17: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 72 | uLong ZCALLBACK fread_mem_func (opaque, stream, buf, size) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/sbml/compress/ioapi_mem.c:90:17: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 90 | uLong ZCALLBACK fwrite_mem_func (opaque, stream, buf, size) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/sbml/compress/ioapi_mem.c:126:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 126 | long ZCALLBACK ftell_mem_func (opaque, stream) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/sbml/compress/ioapi_mem.c:134:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 134 | long ZCALLBACK fseek_mem_func (opaque, stream, offset, origin) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/sbml/compress/ioapi_mem.c:163:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 163 | int ZCALLBACK fclose_mem_func (opaque, stream) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/sbml/compress/ioapi_mem.c:171:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 171 | int ZCALLBACK ferror_mem_func (opaque, stream) | ^ /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/sbml/compress/ioapi_mem.c:179:6: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 179 | void fill_memory_filefunc (pzlib_filefunc_def, ourmem) | ^ 9 warnings generated. [ 98%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLParser.cpp.o [ 98%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o [ 98%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLToken.cpp.o [ 98%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLNode.cpp.o [ 98%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLTokenizer.cpp.o [ 98%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLTriple.cpp.o [ 98%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/ExpatHandler.cpp.o [ 98%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/ExpatAttributes.cpp.o [ 98%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/ExpatParser.cpp.o [100%] Linking CXX static library libsbml-static.a [100%] Built target sbml-static /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/bindings/python/local.i:870: Warning 404: Duplicate template instantiation of 'ListWrapper< SBMLNamespaces >' with name 'ListWrapperSBMLNamespaces' ignored, /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/bindings/python/../swig/libsbml.i:120: Warning 404: previous instantiation of 'ListWrapper< SBMLNamespaces >' with name 'SBMLNamespacesList'. /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/bindings/python/local.i:871: Warning 404: Duplicate template instantiation of 'ListWrapper< CVTerm >' with name 'ListWrapperCVTerm' ignored, /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/bindings/python/../swig/libsbml.i:118: Warning 404: previous instantiation of 'ListWrapper< CVTerm >' with name 'CVTermList'. /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/bindings/python/local.i:872: Warning 404: Duplicate template instantiation of 'ListWrapper< Date >' with name 'ListWrapperDate' ignored, /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/bindings/python/../swig/libsbml.i:117: Warning 404: previous instantiation of 'ListWrapper< Date >' with name 'DateList'. /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/bindings/python/local.i:873: Warning 404: Duplicate template instantiation of 'ListWrapper< ModelCreator >' with name 'ListWrapperModelCreator' ignored, /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/bindings/python/../swig/libsbml.i:116: Warning 404: previous instantiation of 'ListWrapper< ModelCreator >' with name 'ModelCreatorList'. /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/bindings/python/local.i:874: Warning 404: Duplicate template instantiation of 'ListWrapper< SBase >' with name 'ListWrapperSBase' ignored, /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/bindings/python/../swig/libsbml.i:121: Warning 404: previous instantiation of 'ListWrapper< SBase >' with name 'SBaseList'. /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' Python: Add Version to generated file -- Patching Python wrapper [100%] Built target binding_python_swig [100%] Building CXX object src/bindings/python/CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o [100%] Linking CXX shared library _libsbml.so [100%] Built target binding_python_lib copying pyd file to output file =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-python-libsbml-5.20.4_1 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py311-python-libsbml-5.20.4_1 ===> Generating temporary packing list Using libSBML from: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source Using VERSION.txt: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source/VERSION.txt Creating: python-libsbml Version is: 5.20.4 building for python: 3.11.14 (main, Nov 8 2025, 22:14:56) [Clang 19.1.7 (https://github.com/llvm/llvm-project.git llvmorg-19.1.7-0-gcd7080 running install /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext name: _libsbml.cpython-311.so build temp: build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311 extension name: _libsbml extension dir: build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/libsbml/_libsbml.cpython-311.so target_dir_path: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/libsbml target_lib_path: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/libsbml/_libsbml.cpython-311.so suffix: freebsd-15.0-ALPHA3-amd64-cpython-311 cwd: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4 name: _libsbml.cpython-311.so, tmp: build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311 compiling dependencies cmake /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/libsbml_source -DCMAKE_BUILD_TYPE=Release -DWITH_STATIC_RUNTIME=ON -DWITH_EXPAT=ON -DWITH_LIBXML=OFF -DWITH_SWIG=ON -DWITH_ZLIB=ON -DWITH_PYTHON=ON -DPYTHON_EXECUTABLE=/usr/local/bin/python3.11 -DPYTHON_INCLUDE_DIR=/usr/local/include/python3.11 -DENABLE_COMP=ON -DENABLE_FBC=ON -DENABLE_LAYOUT=ON -DENABLE_QUAL=ON -DENABLE_GROUPS=ON -DENABLE_MULTI=ON -DENABLE_RENDER=ON -DENABLE_DISTRIB=ON -DENABLE_SPATIAL=ON -DPYTHON_USE_DYNAMIC_LOOKUP=ON -DLIBSBML_DEPENDENCY_DIR=/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64 -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) CMake Warning at CMakeLists.txt:561 (message): The chosen zlib library does not appear to be valid because it is missing certain required symbols. Please check that is the correct zlib library. For details about the error, please see /CMakeFiles/CMakeError.log CMake Warning (dev) at src/bindings/python/CMakeLists.txt:36 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at src/bindings/python/CMakeLists.txt:41 (find_package): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- ---------------------------------------------------------------------- libSBML version 5.20.4 ---------------------------------------------------------------------- More information and the latest version are available online at https://sbml.org/software/libsbml/ Please report problems using the issue tracker at https://github.com/sbmlteam/libsbml/issues To contact the developers directly, email libsbml-team@googlegroups.com Configured on host 'pkg.DaveG.ca' host type = FreeBSD host operating system = FreeBSD 15.0-ALPHA3 host CPU architecture = amd64 General build flags: CC = /usr/local/libexec/ccache/cc CXX = /usr/local/libexec/ccache/c++ CPPFLAGS = -DLINUX CFLAGS = -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fno-strict-aliasing -fPIC CXXFLAGS = -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fno-strict-aliasing -fPIC LDFLAGS = XML parser library configuration: XML library = expat CPPFLAGS for XML = -I/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/include LIBS for XML = /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/install_dependencies_freebsd-15.0-ALPHA3-amd64/lib/libexpat.a Other libSBML configuration settings: Installation $prefix = /usr/local -- Value of $LD_LIBRARY_PATH = -- Using SWIG = /usr/local/bin/swig (Version 4.3.1) -- Using Python = /usr/local/bin/python3.11 -- Using C++ namespace ('libsbml') = no -- -- Build examples = no -- -- -- Support for SBML Level 3 Packages: -- SBML 'arrays' package = OFF -- SBML 'comp' package = ON -- SBML 'distrib' package = ON -- SBML 'dyn' package = OFF -- SBML 'fbc' package = ON -- SBML 'groups' package = ON -- SBML 'l3v2extendedmath' package = ON -- SBML 'layout' package = ON -- SBML 'multi' package = ON -- SBML 'qual' package = ON -- SBML 'render' package = ON -- SBML 'req' package = OFF -- SBML 'spatial' package = ON -- -- Other potentially important settings: -- Compression support is enabled for .zip and .gz files -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- -- Configuring done (0.2s) -- Generating done (0.3s) -- Build files have been written to: /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/python-libsbml-5.20.4/build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311 cmake --build . --target binding_python_lib --config Release -- [ 0%] Built target binding_python_swig [100%] Built target sbml-static [100%] Building CXX object src/bindings/python/CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o [100%] Linking CXX shared library _libsbml.so [100%] Built target binding_python_lib copying pyd file to output file running install_lib creating /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/stage/usr/local/lib/python3.11 creating /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/stage/usr/local/lib/python3.11/site-packages/libsbml copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/libsbml/__init__.py -> /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/stage/usr/local/lib/python3.11/site-packages/libsbml copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/libsbml/_libsbml.cpython-311.so -> /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/stage/usr/local/lib/python3.11/site-packages/libsbml byte-compiling /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/stage/usr/local/lib/python3.11/site-packages/libsbml/__init__.py to __init__.cpython-311.pyc writing byte-compilation script '/tmp/tmp54n5nwkb.py' /usr/local/bin/python3.11 /tmp/tmp54n5nwkb.py removing /tmp/tmp54n5nwkb.py running install_egg_info running egg_info writing python_libsbml.egg-info/PKG-INFO writing dependency_links to python_libsbml.egg-info/dependency_links.txt writing top-level names to python_libsbml.egg-info/top_level.txt reading manifest file 'python_libsbml.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.html' adding license file 'LICENSE.txt' writing manifest file 'python_libsbml.egg-info/SOURCES.txt' Copying python_libsbml.egg-info to /wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/stage/usr/local/lib/python3.11/site-packages/python_libsbml-5.20.4-py3.11.egg-info running install_scripts writing list of installed files to '/wrkdirs/usr/ports/biology/py-python-libsbml/work-py311/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-11-10T03:38:09+0000' 'PKG_NOTE_ports_top_git_hash=ec159283c191' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=4f0eba1efd73' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py311-python-libsbml-5.20.4_1 ===> Building py311-python-libsbml-5.20.4_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-python-libsbml-5.20.4_1 build of biology/py-python-libsbml@py311 | py311-python-libsbml-5.20.4_1 ended at Sun Nov 9 22:43:30 EST 2025 build time: 00:05:23