=>> Building biology/py-PySCeS build started at Tue Nov 11 23:26:32 EST 2025 port directory: /usr/ports/biology/py-PySCeS package name: py311-pysces-1.2.2_1 building for: FreeBSD pkg.DaveG.ca 15.0-ALPHA3 FreeBSD 15.0-ALPHA3 1500064 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1331 Sep 22 04:12 /usr/ports/biology/py-PySCeS/Makefile Ports top last git commit: ec159283c191 Ports top unclean checkout: no Port dir last git commit: b304d8ab18ac Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1500064 Job Id: 15 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500064 UNAME_v=FreeBSD 15.0-ALPHA3 1500064 UNAME_r=15.0-ALPHA3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/15/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_15_c_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-PySCeS/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-PySCeS/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-PySCeS/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-PySCeS/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lpython3.11 -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/pysces" EXAMPLESDIR="share/examples/pysces" DATADIR="share/pysces" WWWDIR="www/pysces" ETCDIR="etc/pysces" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pysces DOCSDIR=/usr/local/share/doc/pysces EXAMPLESDIR=/usr/local/share/examples/pysces WWWDIR=/usr/local/www/pysces ETCDIR=/usr/local/etc/pysces --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pysces-1.2.2_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.4.2_1.pkg [pkg.DaveG.ca] Installing pkg-2.4.2_1... [pkg.DaveG.ca] Extracting pkg-2.4.2_1: .......... done ===> py311-pysces-1.2.2_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-pysces-1.2.2_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-pysces-1.2.2_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-pysces-1.2.2_1 for building => SHA256 Checksum OK for pysces-1.2.2.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-pysces-1.2.2_1 for building ===> Extracting for py311-pysces-1.2.2_1 => SHA256 Checksum OK for pysces-1.2.2.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-pysces-1.2.2_1 ===> Applying FreeBSD patches for py311-pysces-1.2.2_1 from /usr/ports/biology/py-PySCeS/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pysces-1.2.2_1 depends on package: py311-meson-python>0 - not found ===> Installing existing package /packages/All/py311-meson-python-0.18.0,1.pkg [pkg.DaveG.ca] Installing py311-meson-python-0.18.0,1... [pkg.DaveG.ca] `-- Installing meson-1.7.0... [pkg.DaveG.ca] | `-- Installing ninja-1.13.1,4... [pkg.DaveG.ca] | | `-- Installing python311-3.11.14... [pkg.DaveG.ca] | | `-- Installing gettext-runtime-0.23.1... [pkg.DaveG.ca] | | | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | | | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg.DaveG.ca] | | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | | `-- Installing readline-8.3.1... [pkg.DaveG.ca] | | `-- Extracting readline-8.3.1: .......... done [pkg.DaveG.ca] | | `-- Extracting python311-3.11.14: .......... done [pkg.DaveG.ca] | `-- Extracting ninja-1.13.1,4: ..... done [pkg.DaveG.ca] `-- Extracting meson-1.7.0: .......... done [pkg.DaveG.ca] `-- Installing patchelf-0.18.0... [pkg.DaveG.ca] `-- Extracting patchelf-0.18.0: .... done [pkg.DaveG.ca] `-- Installing py311-packaging-25.0... [pkg.DaveG.ca] `-- Extracting py311-packaging-25.0: .......... done [pkg.DaveG.ca] `-- Installing py311-pyproject-metadata-0.9.1... [pkg.DaveG.ca] `-- Extracting py311-pyproject-metadata-0.9.1: .......... done [pkg.DaveG.ca] Extracting py311-meson-python-0.18.0,1: .......... done ===== Message from python311-3.11.14: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-pysces-1.2.2_1 depends on package: py311-meson-python>0 - found ===> Returning to build of py311-pysces-1.2.2_1 ===> py311-pysces-1.2.2_1 depends on package: py311-numpy>=1.16,1<1.27,1 - not found ===> Installing existing package /packages/All/py311-numpy-1.26.4_10,1.pkg [pkg.DaveG.ca] Installing py311-numpy-1.26.4_10,1... [pkg.DaveG.ca] `-- Installing gcc13-13.3.0_3... [pkg.DaveG.ca] | `-- Installing binutils-2.44,1... [pkg.DaveG.ca] | | `-- Installing zstd-1.5.7... [pkg.DaveG.ca] | | `-- Installing liblz4-1.10.0_2,1... [pkg.DaveG.ca] | | `-- Extracting liblz4-1.10.0_2,1: .......... done [pkg.DaveG.ca] | | `-- Extracting zstd-1.5.7: .......... done [pkg.DaveG.ca] | `-- Extracting binutils-2.44,1: .......... done [pkg.DaveG.ca] | `-- Installing gmp-6.3.0... [pkg.DaveG.ca] | `-- Extracting gmp-6.3.0: .......... done [pkg.DaveG.ca] | `-- Installing mpc-1.3.1_1... [pkg.DaveG.ca] | | `-- Installing mpfr-4.2.2,1... [pkg.DaveG.ca] | | `-- Extracting mpfr-4.2.2,1: .......... done [pkg.DaveG.ca] | `-- Extracting mpc-1.3.1_1: ...... done [pkg.DaveG.ca] `-- Extracting gcc13-13.3.0_3: .......... done [pkg.DaveG.ca] `-- Installing openblas-0.3.30,2... [pkg.DaveG.ca] `-- Extracting openblas-0.3.30,2: .......... done [pkg.DaveG.ca] `-- Installing suitesparse-umfpack-6.3.7... [pkg.DaveG.ca] | `-- Installing suitesparse-amd-3.3.4... [pkg.DaveG.ca] | | `-- Installing suitesparse-config-7.12.1... [pkg.DaveG.ca] | | `-- Extracting suitesparse-config-7.12.1: .......... done [pkg.DaveG.ca] | `-- Extracting suitesparse-amd-3.3.4: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-camd-3.3.5... [pkg.DaveG.ca] | `-- Extracting suitesparse-camd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-ccolamd-3.3.5... [pkg.DaveG.ca] | `-- Extracting suitesparse-ccolamd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-cholmod-5.3.4... [pkg.DaveG.ca] | | `-- Installing suitesparse-colamd-3.3.5... [pkg.DaveG.ca] | | `-- Extracting suitesparse-colamd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Extracting suitesparse-cholmod-5.3.4: .......... done [pkg.DaveG.ca] `-- Extracting suitesparse-umfpack-6.3.7: .......... done [pkg.DaveG.ca] Extracting py311-numpy-1.26.4_10,1: .......... done ===== Message from gcc13-13.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py311-pysces-1.2.2_1 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> Returning to build of py311-pysces-1.2.2_1 ===> py311-pysces-1.2.2_1 depends on executable: gfortran13 - found ===> py311-pysces-1.2.2_1 depends on file: /usr/local/bin/python3.11 - found ===> py311-pysces-1.2.2_1 depends on file: /usr/local/bin/as - found ===> py311-pysces-1.2.2_1 depends on package: py311-build>=0 - not found ===> Installing existing package /packages/All/py311-build-1.2.2_2.pkg [pkg.DaveG.ca] Installing py311-build-1.2.2_2... [pkg.DaveG.ca] `-- Installing py311-pyproject-hooks-1.2.0... [pkg.DaveG.ca] `-- Extracting py311-pyproject-hooks-1.2.0: .......... done [pkg.DaveG.ca] Extracting py311-build-1.2.2_2: .......... done ===> py311-pysces-1.2.2_1 depends on package: py311-build>=0 - found ===> Returning to build of py311-pysces-1.2.2_1 ===> py311-pysces-1.2.2_1 depends on package: py311-installer>=0 - not found ===> Installing existing package /packages/All/py311-installer-0.7.0.pkg [pkg.DaveG.ca] Installing py311-installer-0.7.0... [pkg.DaveG.ca] Extracting py311-installer-0.7.0: .......... done ===> py311-pysces-1.2.2_1 depends on package: py311-installer>=0 - found ===> Returning to build of py311-pysces-1.2.2_1 ===> py311-pysces-1.2.2_1 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> py311-pysces-1.2.2_1 depends on file: /usr/local/bin/ccache - found ===> Returning to build of py311-pysces-1.2.2_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-pysces-1.2.2_1 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-pysces-1.2.2_1 * Getting build dependencies for wheel... * Building wheel... + meson setup /wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2 /wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2/.mesonpy-t4tmqreu -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --native-file=/wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2/.mesonpy-t4tmqreu/meson-python-native-file.ini The Meson build system Version: 1.7.0 Source dir: /wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2 Build dir: /wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2/.mesonpy-t4tmqreu Build type: native build Project name: pysces Project version: 1.2.2 Fortran compiler for the host machine: gfortran13 (gcc 13.3.0 "GNU Fortran (FreeBSD Ports Collection) 13.3.0") Fortran linker for the host machine: gfortran13 ld.bfd 2.44 C compiler for the host machine: cc (clang 19.1.7 "FreeBSD clang version 19.1.7 (https://github.com/llvm/llvm-project.git llvmorg-19.1.7-0-gcd708029e0b2)") C linker for the host machine: cc ld.lld 19.1.7 Host machine cpu family: x86_64 Host machine cpu: x86_64 Program python found: YES (/usr/local/bin/python3.11) Did not find pkg-config by name 'pkg-config' Found pkg-config: NO Run-time dependency python found: YES 3.11 Library quadmath found: YES Build targets in project: 4 pysces 1.2.2 User defined options Native files: /wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2/.mesonpy-t4tmqreu/meson-python-native-file.ini b_ndebug : if-release b_vscrt : md buildtype : release Found ninja-1.13.1 at /usr/local/bin/ninja + /usr/local/bin/ninja -j4 [1/21] Generating pysces/nleq2/nleq2module.c with a custom command append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'int' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' Reading fortran codes... Reading file '../pysces/nleq2/nleq2.pyf' (format:free) Post-processing... Block: nleq2__user__routines Block: nleq2_user_interface Block: fcn Block: jac Block: nleq2 Block: nleq2 Block: nleq2 In: ../pysces/nleq2/nleq2.pyf:nleq2:nleq2:nleq2 get_useparameters: no module nleq2__user__routines info used by nleq2 Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Building modules... Constructing call-back function "cb_fcn_in_nleq2__user__routines" def fcn(x,ifail,[n]): return f,ifail Constructing call-back function "cb_jac_in_nleq2__user__routines" def jac(x,[n,m1]): return a Building module "nleq2"... Generating possibly empty wrappers" Maybe empty "nleq2-f2pywrappers.f" Constructing wrapper function "nleq2"... x,xscal,rtol,iopt,ierr = nleq2(fcn,jac,x,xscal,rtol,iopt,iwk,rwk,[n,liwk,lrwk,fcn_extra_args,jac_extra_args]) Wrote C/API module "nleq2" to file "pysces/nleq2/nleq2module.c" [2/21] Generating pysces/pitcon/pitconmodule.c with a custom command append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' Reading fortran codes... Reading file '../pysces/pitcon/pitcon.pyf' (format:free) Post-processing... Block: pitcon1__user__routines Block: pitcon1_user_interface Block: df Block: fx Block: pitcon Block: pitcon1 In: ../pysces/pitcon/pitcon.pyf:pitcon:unknown_interface:pitcon1 get_useparameters: no module pitcon1__user__routines info used by pitcon1 Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Building modules... Constructing call-back function "cb_df_in_pitcon1__user__routines" def df(x,[nvar]): return fjac,ierror Constructing call-back function "cb_fx_in_pitcon1__user__routines" def fx(x,[nvar]): return fvec,ierror Building module "pitcon"... Generating possibly empty wrappers" Maybe empty "pitcon-f2pywrappers.f" Constructing wrapper function "pitcon1"... getarrdims:warning: assumed shape array, using 0 instead of '*' getarrdims:warning: assumed shape array, using 0 instead of '*' ierror,iwork,rwork,xr = pitcon1(df,fpar,fx,ipar,iwork,rwork,xr,[liw,nvar,lrw,imth,df_extra_args,fx_extra_args,overwrite_iwork,overwrite_rwork,overwrite_xr]) Wrote C/API module "pitcon" to file "pysces/pitcon/pitconmodule.c" [3/21] Scanning modules [4/21] Scanning modules [5/21] Compiling Fortran object pysces/nleq2/nleq2.cpython-311.so.p/meson-generated_.._nleq2-f2pywrappers.f.o [6/21] Compiling C object pysces/nleq2/nleq2.cpython-311.so.p/5c0f0a4fc003b9a502c5ea351bec151105cedb01_.._.._f2py_src_fortranobject.c.o [7/21] Compiling C object pysces/pitcon/pitcon.cpython-311.so.p/5c0f0a4fc003b9a502c5ea351bec151105cedb01_.._.._f2py_src_fortranobject.c.o [8/21] Compiling Fortran object pysces/nleq2/nleq2.cpython-311.so.p/linalg_nleq2.f.o ../pysces/nleq2/linalg_nleq2.f:183:32: 183 | DOUBLE PRECISION DD,D1MACH,H,HMAX,S,SH,T | 1 Warning: Unused variable 'd1mach' declared at (1) [-Wunused-variable] ../pysces/nleq2/linalg_nleq2.f:346:9: 346 | IF(LEVEL.EQ.3) THEN | ^ Warning: 'level' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/nleq2/linalg_nleq2.f:182:52: 182 | INTEGER I,II,IRANKH,IRK1,I1,J,JD,JJ,K,K1,LEVEL,MH, IDATA | ^ note: 'level' was declared here ../pysces/nleq2/linalg_nleq2.f:245:16: 245 | IF(H.LT.HMAX) JD = 1 | ^ Warning: 'hmax' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/nleq2/linalg_nleq2.f:183:39: 183 | DOUBLE PRECISION DD,D1MACH,H,HMAX,S,SH,T | ^ note: 'hmax' was declared here ../pysces/nleq2/linalg_nleq2.f:272:26: 272 | IF(T.LE.DD .OR. K.GT.IRANKH) THEN | ^ Warning: 'dd' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/nleq2/linalg_nleq2.f:183:25: 183 | DOUBLE PRECISION DD,D1MACH,H,HMAX,S,SH,T | ^ note: 'dd' was declared here ../pysces/nleq2/linalg_nleq2.f:373:15: 373 | IF (S.GT.-ONE) THEN | ^ Warning: 's' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/nleq2/linalg_nleq2.f:183:41: 183 | DOUBLE PRECISION DD,D1MACH,H,HMAX,S,SH,T | ^ note: 's' was declared here ../pysces/nleq2/linalg_nleq2.f:391:33: 391 | IF (IRANKC+1.LE.IRANK .AND. T.NE.ZERO) THEN | ^ Warning: 't' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/nleq2/linalg_nleq2.f:183:46: 183 | DOUBLE PRECISION DD,D1MACH,H,HMAX,S,SH,T | ^ note: 't' was declared here [9/21] Compiling Fortran object pysces/nleq2/nleq2.cpython-311.so.p/zibsec.f.o [10/21] Compiling Fortran object pysces/nleq2/nleq2.cpython-311.so.p/zibmon.f.o ../pysces/nleq2/zibmon.f:384:55-69: 384 | $ 'The following indices are active', (INDACT(I),I=0,IONCNT) | 1 2 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) ../pysces/nleq2/zibmon.f:394:55-69: 394 | $ 'The following indices are active', (INDACT(I),I=0,IONCNT) | 1 2 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) [11/21] Compiling Fortran object pysces/nleq2/nleq2.cpython-311.so.p/zibconst.f.o [12/21] Compiling Fortran object pysces/nleq2/nleq2.cpython-311.so.p/wnorm.f.o [13/21] Compiling C object pysces/nleq2/nleq2.cpython-311.so.p/meson-generated_.._nleq2module.c.o pysces/nleq2/nleq2module.c:659:9: warning: unused variable 'ifail' [-Wunused-variable] 659 | int ifail=(*ifail_cb_capi); | ^~~~~ 1 warning generated. [14/21] Compiling Fortran object pysces/pitcon/pitcon.cpython-311.so.p/meson-generated_.._pitcon-f2pywrappers.f.o [15/21] Compiling Fortran object pysces/pitcon/pitcon.cpython-311.so.p/pcon61subd.f.o ../pysces/pitcon/pcon61subd.f:961:72: 961 | 10 ASSIGN 30 TO NEXT | 1 Warning: Deleted feature: ASSIGN statement at (1) ../pysces/pitcon/pcon61subd.f:966:20: 966 | 20 GO TO NEXT,(30, 50, 70, 110) | 1 Warning: Deleted feature: Assigned GOTO statement at (1) ../pysces/pitcon/pcon61subd.f:968:72: 968 | ASSIGN 50 TO NEXT | 1 Warning: Deleted feature: ASSIGN statement at (1) ../pysces/pitcon/pcon61subd.f:977:72: 977 | ASSIGN 70 TO NEXT | 1 Warning: Deleted feature: ASSIGN statement at (1) ../pysces/pitcon/pcon61subd.f:983:72: 983 | ASSIGN 110 TO NEXT | 1 Warning: Deleted feature: ASSIGN statement at (1) ../pysces/pitcon/pcon61subd.f:1019:72: 1019 | 95 SUM = SUM + DX(J)**2 | 1 Warning: Fortran 2018 deleted feature: DO termination statement which is not END DO or CONTINUE with label 95 at (1) ../pysces/pitcon/pcon61subd.f:996:5: 996 | 110 IF( DABS(DX(I)) .LE. XMAX ) GO TO 115 | 1 Warning: Label 110 at (1) defined but not used [-Wunused-label] ../pysces/pitcon/pcon61subd.f:991:5: 991 | 70 IF( DABS(DX(I)) .GT. CUTLO ) GO TO 75 | 1 Warning: Label 70 at (1) defined but not used [-Wunused-label] ../pysces/pitcon/pcon61subd.f:973:5: 973 | 50 IF( DX(I) .EQ. ZERO) GO TO 200 | 1 Warning: Label 50 at (1) defined but not used [-Wunused-label] ../pysces/pitcon/pcon61subd.f:996:10: 996 | 110 IF( DABS(DX(I)) .LE. XMAX ) GO TO 115 | ^ Warning: 'xmax' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/pitcon/pcon61subd.f:915:63: 915 | DOUBLE PRECISION DX(1), CUTLO, CUTHI, HITEST, SUM, XMAX,ZERO,ONE | ^ note: 'xmax' was declared here [16/21] Compiling Fortran object pysces/pitcon/pitcon.cpython-311.so.p/dpcon61w.f.o [17/21] Compiling C object pysces/pitcon/pitcon.cpython-311.so.p/meson-generated_.._pitconmodule.c.o pysces/pitcon/pitconmodule.c:419:9: warning: unused variable 'ierror' [-Wunused-variable] 419 | int ierror=(*ierror_cb_capi); | ^~~~~~ pysces/pitcon/pitconmodule.c:618:9: warning: unused variable 'ierror' [-Wunused-variable] 618 | int ierror=(*ierror_cb_capi); | ^~~~~~ 2 warnings generated. [18/21] Compiling Fortran object pysces/pitcon/pitcon.cpython-311.so.p/dpcon61.f.o ../pysces/pitcon/dpcon61.f:1782:5: 1782 | 700 CONTINUE | 1 Warning: Label 700 at (1) defined but not used [-Wunused-label] ../pysces/pitcon/dpcon61.f:1566:3: 1566 | 410 CONTINUE | 1 Warning: Label 410 at (1) defined but not used [-Wunused-label] ../pysces/pitcon/dpcon61.f:3671:27: 3671 | * IWORK,JAC,LIW,LOUNIT,NBAND,NEQN,NVAR,X,XTEMP,WORK1,WORK2) | 1 Warning: Unused dummy argument 'lounit' at (1) [-Wunused-dummy-argument] ../pysces/pitcon/dpcon61.f:3126:21: 3126 | * JAC,LIW,LOUNIT,NVAR,X,WORK1,WORK2) | 1 Warning: Unused dummy argument 'lounit' at (1) [-Wunused-dummy-argument] ../pysces/pitcon/dpcon61.f:2533:11: 2533 | 1 .OR.(P.GE.ONEP5*ABS(HALFUB*Q)-ABS(TOLER*Q))) THEN | ^ Warning: 'sdel3' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/pitcon/dpcon61.f:2423:28: 2423 | DOUBLE PRECISION SDEL3 | ^ note: 'sdel3' was declared here ../pysces/pitcon/dpcon61.f:3060:72: 3060 | * JACK,LIW,LOUNIT,NVAR,X,RWORK(LFXP),RWORK(LFXM)) | ^ Warning: 'lfxm' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/pitcon/dpcon61.f:2994:20: 2994 | INTEGER LFXM | ^ note: 'lfxm' was declared here ../pysces/pitcon/dpcon61.f:3060:72: 3060 | * JACK,LIW,LOUNIT,NVAR,X,RWORK(LFXP),RWORK(LFXM)) | ^ Warning: 'lfxp' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/pitcon/dpcon61.f:2995:20: 2995 | INTEGER LFXP | ^ note: 'lfxp' was declared here ../pysces/pitcon/dpcon61.f:3515:72: 3515 | * RWORK(LDX),RWORK(LFXP),RWORK(LFXM)) | ^ Warning: 'ldx' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/pitcon/dpcon61.f:3422:19: 3422 | INTEGER LDX | ^ note: 'ldx' was declared here ../pysces/pitcon/dpcon61.f:3515:72: 3515 | * RWORK(LDX),RWORK(LFXP),RWORK(LFXM)) | ^ Warning: 'lfxm' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/pitcon/dpcon61.f:3423:20: 3423 | INTEGER LFXM | ^ note: 'lfxm' was declared here ../pysces/pitcon/dpcon61.f:3515:72: 3515 | * RWORK(LDX),RWORK(LFXP),RWORK(LFXM)) | ^ Warning: 'lfxp' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/pitcon/dpcon61.f:3424:20: 3424 | INTEGER LFXP | ^ note: 'lfxp' was declared here [19/21] Compiling Fortran object pysces/nleq2/nleq2.cpython-311.so.p/nleq2.f.o ../pysces/nleq2/nleq2.f:1557:72: 1557 | $ ' FCCOR = ', D18.10, ' FC = ', D18.10, /, | 1 Warning: Line truncated at (1) [-Wline-truncation] ../pysces/nleq2/nleq2.f:1558:72: 1558 | $ ' DMYCOR = ', D18.10, ' FCNUMP = ', D18.10, /, | 1 Warning: Line truncated at (1) [-Wline-truncation] ../pysces/nleq2/nleq2.f:1388:20: 1388 | INTRINSIC DLOG | 1 Warning: Type specified for intrinsic function 'dlog' at (1) is ignored [-Wsurprising] ../pysces/nleq2/nleq2.f:1419:17: 1419 | TOLMIN = DSQRT(TEN*EPMACH) | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] ../pysces/nleq2/nleq2.f:1926:24: 1926 | FCH = FC | 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] ../pysces/nleq2/nleq2.f:1128:63: 1128 | $QA,A,DXSAVE,DX,DXQ,XA,XWA,F,FA,ETA,XW,FW,DXQA,QU,T1,T2,T3,FC, | 1 Warning: Unused dummy argument 't3' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:3106:51: 3106 | SUBROUTINE N2PRV2(DLEVF,DLEVX,FC,NITER,MPRMON,LUMON,QMIXIO, | 1 Warning: Unused dummy argument 'mprmon' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2675:61: 2675 | SUBROUTINE N2LVLS(N,DX1,XW,F,DXQ,CONV,SUMX,DLEVF,MPRMON,QDSCAL) | 1 Warning: Unused dummy argument 'mprmon' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2628:64: 2628 | SUBROUTINE N2SOLV(N,LDA,LDAINV,ML,MU,A,AINV,B,Z,IRANK,IOPT, | 1 Warning: Unused dummy argument 'iopt' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2629:26: 2629 | $IFAIL,LIWK,IWK,LAIWK,LRWK,RWK,LARWK) | 1 Warning: Unused dummy argument 'laiwk' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2629:41: 2629 | $IFAIL,LIWK,IWK,LAIWK,LRWK,RWK,LARWK) | 1 Warning: Unused dummy argument 'larwk' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2628:39: 2628 | SUBROUTINE N2SOLV(N,LDA,LDAINV,ML,MU,A,AINV,B,Z,IRANK,IOPT, | 1 Warning: Unused dummy argument 'ml' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2628:42: 2628 | SUBROUTINE N2SOLV(N,LDA,LDAINV,ML,MU,A,AINV,B,Z,IRANK,IOPT, | 1 Warning: Unused dummy argument 'mu' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2520:39: 2520 | SUBROUTINE N2FACT(N,LDA,LDAINV,ML,MU,A,AINV,COND,IRANK,IOPT, | 1 Warning: Unused dummy argument 'ml' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2520:42: 2520 | SUBROUTINE N2FACT(N,LDA,LDAINV,ML,MU,A,AINV,COND,IRANK,IOPT, | 1 Warning: Unused dummy argument 'mu' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2383:52: 2383 | SUBROUTINE N2SCAL(N,X,XA,XSCAL,XW,ISCAL,QINISC,IOPT,LRWK,RWK) | 1 Warning: Unused dummy argument 'qinisc' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:2383:66: 2383 | SUBROUTINE N2SCAL(N,X,XA,XSCAL,XW,ISCAL,QINISC,IOPT,LRWK,RWK) | 1 Warning: Unused dummy argument 'rwk' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:974:57: 974 | SUBROUTINE N2PCHK(N,X,XSCAL,RTOL,IOPT,IERR,LIWK,IWK,LRWK,RWK) | 1 Warning: Unused dummy argument 'iwk' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:974:66: 974 | SUBROUTINE N2PCHK(N,X,XSCAL,RTOL,IOPT,IERR,LIWK,IWK,LRWK,RWK) | 1 Warning: Unused dummy argument 'rwk' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:974:27: 974 | SUBROUTINE N2PCHK(N,X,XSCAL,RTOL,IOPT,IERR,LIWK,IWK,LRWK,RWK) | 1 Warning: Unused dummy argument 'x' at (1) [-Wunused-dummy-argument] ../pysces/nleq2/nleq2.f:1829:72: 1829 | FCMON = DMIN1(FC,FCMON) | ^ Warning: 'fcmon' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/nleq2/nleq2.f:1390:56: 1390 | $ SUMXA0,SUMXA1,SUMXA2,SUMXTE,FCMON,DLOG | ^ note: 'fcmon' was declared here ../pysces/nleq2/nleq2.f:2210:72: 2210 | APREC = DSQRT(SUMXA/DBLE(FLOAT(N))) | ^ Warning: 'sumxa' may be used uninitialized [-Wmaybe-uninitialized] ../pysces/nleq2/nleq2.f:1383:58: 1383 | $FCNUMP,FCCOR,FCNMP2,FCNUMK,FCREDU,DLEVFN,SENS1,SUMXA,SUM1,SUM2, | ^ note: 'sumxa' was declared here [20/21] Linking target pysces/nleq2/nleq2.cpython-311.so [21/21] Linking target pysces/pitcon/pitcon.cpython-311.so [1/82] /wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2/.mesonpy-t4tmqreu/pysces/nleq2/nleq2.cpython-311.so [2/82] /wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2/.mesonpy-t4tmqreu/pysces/pitcon/pitcon.cpython-311.so [3/82] /wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2/pysces/PyscesConfig.py [4/82] /wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2/pysces/PyscesContrib.py [5/82] /wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2/pysces/PyscesContribUser.py [6/82] /wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2/pysces/PyscesInterfaces.py [7/82] 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/wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2/pysces/pscmodels/pysces_test_linear1.psc [78/82] /wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2/pysces/pscmodels/pysces_test_moiety1.psc [79/82] /wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2/pysces/pscmodels/pysces_test_pitcon.psc [80/82] /wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2/pysces/sandbox/Intersect.py [81/82] /wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2/pysces/sandbox/__init__.py [82/82] /wrkdirs/usr/ports/biology/py-PySCeS/work-py311/pysces-1.2.2/pysces/tests/__init__.py Successfully built pysces-1.2.2-cp311-cp311-freebsd_15_0_alpha3_amd64.whl =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pysces-1.2.2_1 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> py311-pysces-1.2.2_1 depends on package: 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[pkg.DaveG.ca] | `-- Extracting py311-six-1.17.0: ........ done [pkg.DaveG.ca] `-- Extracting py311-python-dateutil-2.9.0: .......... done [pkg.DaveG.ca] `-- Installing py311-pytz-2025.2_1,1... [pkg.DaveG.ca] `-- Extracting py311-pytz-2025.2_1,1: .......... done [pkg.DaveG.ca] `-- Installing py311-tornado-6.5... [pkg.DaveG.ca] `-- Extracting py311-tornado-6.5: .......... done [pkg.DaveG.ca] `-- Installing qhull-8.0.2_3,1... [pkg.DaveG.ca] `-- Extracting qhull-8.0.2_3,1: .......... done [pkg.DaveG.ca] Extracting py311-matplotlib-3.8.0_2: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gdk-pixbuf-query-loaders.ucl Generating gdk-pixbuf modules cache ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ==> Running trigger: shared-mime-info.ucl Building the Shared MIME-Info database cache ===== Message from freetype2-2.14.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from libinotify-20240724_3: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from libraqm-0.10.3: -- ===> NOTICE: The libraqm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> py311-pysces-1.2.2_1 depends on package: py311-matplotlib>0 - found ===> Returning to build of py311-pysces-1.2.2_1 ===> py311-pysces-1.2.2_1 depends on package: py311-scipy>0 - not found ===> Installing existing package /packages/All/py311-scipy-1.11.1_4,1.pkg [pkg.DaveG.ca] Installing py311-scipy-1.11.1_4,1... [pkg.DaveG.ca] `-- Installing blas-3.12.1... [pkg.DaveG.ca] `-- Extracting blas-3.12.1: ..... done [pkg.DaveG.ca] Extracting py311-scipy-1.11.1_4,1: .......... done ===> py311-pysces-1.2.2_1 depends on package: py311-scipy>0 - found ===> Returning to build of py311-pysces-1.2.2_1 ===> py311-pysces-1.2.2_1 depends on package: py311-python-libsbml>0 - not found ===> Installing existing package /packages/All/py311-python-libsbml-5.20.4_1.pkg [pkg.DaveG.ca] Installing py311-python-libsbml-5.20.4_1... [pkg.DaveG.ca] Extracting py311-python-libsbml-5.20.4_1: ........ done ===> py311-pysces-1.2.2_1 depends on package: py311-python-libsbml>0 - found ===> Returning to build of py311-pysces-1.2.2_1 ===> py311-pysces-1.2.2_1 depends on executable: gfortran13 - found ===> py311-pysces-1.2.2_1 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py311-pysces-1.2.2_1 ===> Generating temporary packing list ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-11-12T04:26:32+0000' 'PKG_NOTE_ports_top_git_hash=ec159283c191' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=b304d8ab18ac' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py311-pysces-1.2.2_1 ===> Building py311-pysces-1.2.2_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-pysces-1.2.2_1 build of biology/py-PySCeS@py311 | py311-pysces-1.2.2_1 ended at Tue Nov 11 23:27:18 EST 2025 build time: 00:00:48