=>> Building science/py-pymol build started at Thu Mar 12 12:48:02 EDT 2026 port directory: /usr/ports/science/py-pymol package name: py311-pymol-3.0.0_2 building for: FreeBSD pkg.DaveG.ca 14.4-RELEASE FreeBSD 14.4-RELEASE 1404000 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2008 Jul 9 2025 /usr/ports/science/py-pymol/Makefile Ports top last git commit: 26b198eb3ee3 Ports top unclean checkout: no Port dir last git commit: 3068854dd026 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1404000 Job Id: 09 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1404000 UNAME_v=FreeBSD 14.4-RELEASE 1404000 UNAME_r=14.4-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/09/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_14_4_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for py311-pymol-3.0.0_2: ====> GUI (Graphical User Interface) support: you have to select exactly one of them QT5=on: Qt 5 toolkit support TK=off: Tk GUI toolkit support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-pymol/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-pymol/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-pymol/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-pymol/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-pymol/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-pymol/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" GTK4_VERSION="4.0.0" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PYQT_APIDIR=share/PyQt5/3.11/qsci PYQT_DOCDIR=share/doc/PyQt5/3.11 PYQT_EXAMPLEDIR=share/examples/PyQt5/3.11 PYQT_SIPDIR=/usr/local/lib/python3.11/site-packages/PyQt5/bindings PYQT_DESIGNERDIR=/designer/PyQt5/3.11 PYQT_QMLDIR=/PyQt5/3.11 PYQT_SIPVERSION=6.15.1 PYQT_QSCIVERSION=2.14.1 PYQT_PYQTVERSION=5.15.11 OSREL=14.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py311-pymol" EXAMPLESDIR="share/examples/py311-pymol" DATADIR="share/py311-pymol" WWWDIR="www/py311-pymol" ETCDIR="etc/py311-pymol" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py311-pymol DOCSDIR=/usr/local/share/doc/py311-pymol EXAMPLESDIR=/usr/local/share/examples/py311-pymol WWWDIR=/usr/local/www/py311-pymol ETCDIR=/usr/local/etc/py311-pymol --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pymol-3.0.0_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.6.2.pkg [pkg.DaveG.ca] Installing pkg-2.6.2... [pkg.DaveG.ca] Extracting pkg-2.6.2: .......... done ===> py311-pymol-3.0.0_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-pymol-3.0.0_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-pymol-3.0.0_2 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-pymol-3.0.0_2 for building => SHA256 Checksum OK for schrodinger-pymol-open-source-v3.0.0_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-pymol-3.0.0_2 for building ===> Extracting for py311-pymol-3.0.0_2 => SHA256 Checksum OK for schrodinger-pymol-open-source-v3.0.0_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-pymol-3.0.0_2 ===> Applying FreeBSD patches for py311-pymol-3.0.0_2 from /usr/ports/science/py-pymol/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pymol-3.0.0_2 depends on package: py311-numpy>=1.16,1<1.27,1 - not found ===> Installing existing package /packages/All/py311-numpy-1.26.4_12,1.pkg [pkg.DaveG.ca] Installing py311-numpy-1.26.4_12,1... [pkg.DaveG.ca] `-- Installing gcc14-14.2.0_4... [pkg.DaveG.ca] | `-- Installing binutils-2.44,1... [pkg.DaveG.ca] | | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | | `-- Installing zstd-1.5.7_1... [pkg.DaveG.ca] | | `-- Extracting zstd-1.5.7_1: .......... done [pkg.DaveG.ca] | `-- Extracting binutils-2.44,1: .......... done [pkg.DaveG.ca] | `-- Installing gmp-6.3.0... [pkg.DaveG.ca] | `-- Extracting gmp-6.3.0: .......... done [pkg.DaveG.ca] | `-- Installing mpc-1.3.1_1... [pkg.DaveG.ca] | | `-- Installing mpfr-4.2.2,1... [pkg.DaveG.ca] | | `-- Extracting mpfr-4.2.2,1: .......... done [pkg.DaveG.ca] | `-- Extracting mpc-1.3.1_1: ...... done [pkg.DaveG.ca] `-- Extracting gcc14-14.2.0_4: .......... done [pkg.DaveG.ca] `-- Installing openblas-0.3.30,2... [pkg.DaveG.ca] `-- Extracting openblas-0.3.30,2: .......... done [pkg.DaveG.ca] `-- Installing python311-3.11.15... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | `-- Installing readline-8.3.3... [pkg.DaveG.ca] | `-- Extracting readline-8.3.3: .......... done [pkg.DaveG.ca] `-- Extracting python311-3.11.15: .......... done [pkg.DaveG.ca] `-- Installing suitesparse-umfpack-6.3.7... [pkg.DaveG.ca] | `-- Installing suitesparse-amd-3.3.4... [pkg.DaveG.ca] | | `-- Installing suitesparse-config-7.12.2... [pkg.DaveG.ca] | | `-- Extracting suitesparse-config-7.12.2: .......... done [pkg.DaveG.ca] | `-- Extracting suitesparse-amd-3.3.4: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-camd-3.3.5... [pkg.DaveG.ca] | `-- Extracting suitesparse-camd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-ccolamd-3.3.5... [pkg.DaveG.ca] | `-- Extracting suitesparse-ccolamd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-cholmod-5.3.4... [pkg.DaveG.ca] | | `-- Installing suitesparse-colamd-3.3.5... [pkg.DaveG.ca] | | `-- Extracting suitesparse-colamd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Extracting suitesparse-cholmod-5.3.4: .......... done [pkg.DaveG.ca] `-- Extracting suitesparse-umfpack-6.3.7: .......... done [pkg.DaveG.ca] Extracting py311-numpy-1.26.4_12,1: .......... done ===== Message from gcc14-14.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python311-3.11.15: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-pymol-3.0.0_2 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> Returning to build of py311-pymol-3.0.0_2 ===> py311-pymol-3.0.0_2 depends on file: /usr/local/include/glm/glm.hpp - not found ===> Installing existing package /packages/All/glm-1.0.3,1.pkg [pkg.DaveG.ca] Installing glm-1.0.3,1... [pkg.DaveG.ca] Extracting glm-1.0.3,1: .......... done ===> py311-pymol-3.0.0_2 depends on file: /usr/local/include/glm/glm.hpp - found ===> Returning to build of py311-pymol-3.0.0_2 ===> py311-pymol-3.0.0_2 depends on file: /usr/local/include/mmtf.hpp - not found ===> Installing existing package /packages/All/mmtf-cpp-1.1.0_1.pkg [pkg.DaveG.ca] Installing mmtf-cpp-1.1.0_1... [pkg.DaveG.ca] `-- Installing msgpack-cxx-6.1.1... [pkg.DaveG.ca] `-- Extracting msgpack-cxx-6.1.1: .......... done [pkg.DaveG.ca] Extracting mmtf-cpp-1.1.0_1: .......... done ===> py311-pymol-3.0.0_2 depends on file: /usr/local/include/mmtf.hpp - found ===> Returning to build of py311-pymol-3.0.0_2 ===> py311-pymol-3.0.0_2 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [pkg.DaveG.ca] Installing py311-setuptools-63.1.0_3... [pkg.DaveG.ca] Extracting py311-setuptools-63.1.0_3: .......... done ===> py311-pymol-3.0.0_2 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-pymol-3.0.0_2 ===> py311-pymol-3.0.0_2 depends on file: /usr/local/bin/python3.11 - found ===> py311-pymol-3.0.0_2 depends on package: xorgproto>=0 - not found ===> Installing existing package /packages/All/xorgproto-2024.1.pkg [pkg.DaveG.ca] Installing xorgproto-2024.1... [pkg.DaveG.ca] Extracting xorgproto-2024.1: .......... done ===> py311-pymol-3.0.0_2 depends on package: xorgproto>=0 - found ===> Returning to build of py311-pymol-3.0.0_2 ===> py311-pymol-3.0.0_2 depends on package: xorgproto>=0 - found ===> py311-pymol-3.0.0_2 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc14 create symlink for gcc14 (world) create symlink for g++14 create symlink for g++14 (world) create symlink for cpp14 create symlink for cpp14 (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> py311-pymol-3.0.0_2 depends on file: /usr/local/bin/ccache - found ===> Returning to build of py311-pymol-3.0.0_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pymol-3.0.0_2 depends on shared library: libfreetype.so - not found ===> Installing existing package /packages/All/freetype2-2.14.1.pkg [pkg.DaveG.ca] Installing freetype2-2.14.1... [pkg.DaveG.ca] `-- Installing brotli-1.2.0,1... [pkg.DaveG.ca] `-- Extracting brotli-1.2.0,1: .......... done [pkg.DaveG.ca] `-- Installing png-1.6.55... [pkg.DaveG.ca] `-- Extracting png-1.6.55: .......... done [pkg.DaveG.ca] Extracting freetype2-2.14.1: .......... done ===== Message from freetype2-2.14.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===> py311-pymol-3.0.0_2 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so) ===> Returning to build of py311-pymol-3.0.0_2 ===> py311-pymol-3.0.0_2 depends on shared library: libnetcdf.so - not found ===> Installing existing package /packages/All/netcdf-4.9.3.pkg [pkg.DaveG.ca] Installing netcdf-4.9.3... [pkg.DaveG.ca] `-- Installing curl-8.17.0... [pkg.DaveG.ca] | `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | | `-- Installing libunistring-1.4.2... [pkg.DaveG.ca] | | `-- Extracting libunistring-1.4.2: .......... done [pkg.DaveG.ca] | `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] | `-- Installing libnghttp2-1.68.0... [pkg.DaveG.ca] | `-- Extracting libnghttp2-1.68.0: ....... done [pkg.DaveG.ca] | `-- Installing libpsl-0.21.5_2... [pkg.DaveG.ca] | `-- Extracting libpsl-0.21.5_2: ........ done [pkg.DaveG.ca] | `-- Installing libssh2-1.11.1,3... [pkg.DaveG.ca] | `-- Extracting libssh2-1.11.1,3: .......... done [pkg.DaveG.ca] `-- Extracting curl-8.17.0: .......... done [pkg.DaveG.ca] `-- Installing hdf5-1.12.2_2,1... [pkg.DaveG.ca] | `-- Installing libaec-1.1.4... [pkg.DaveG.ca] | `-- Extracting libaec-1.1.4: .......... done [pkg.DaveG.ca] `-- Extracting hdf5-1.12.2_2,1: .......... done [pkg.DaveG.ca] `-- Installing pkgconf-2.4.3,1... [pkg.DaveG.ca] `-- Extracting pkgconf-2.4.3,1: .......... done [pkg.DaveG.ca] Extracting netcdf-4.9.3: .......... done ===> py311-pymol-3.0.0_2 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) ===> Returning to build of py311-pymol-3.0.0_2 ===> py311-pymol-3.0.0_2 depends on shared library: libpng16.so - found (/usr/local/lib/libpng16.so) ===> py311-pymol-3.0.0_2 depends on shared library: libGL.so - not found ===> Installing existing package /packages/All/libglvnd-1.7.0.pkg [pkg.DaveG.ca] Installing libglvnd-1.7.0... [pkg.DaveG.ca] `-- Installing libX11-1.8.12,1... [pkg.DaveG.ca] | `-- Installing libxcb-1.17.0... [pkg.DaveG.ca] | | `-- Installing libXau-1.0.12... [pkg.DaveG.ca] | | `-- Extracting libXau-1.0.12: .......... done [pkg.DaveG.ca] | | `-- Installing libXdmcp-1.1.5... [pkg.DaveG.ca] | | `-- Extracting libXdmcp-1.1.5: ...... done [pkg.DaveG.ca] | `-- Extracting libxcb-1.17.0: .......... done [pkg.DaveG.ca] `-- Extracting libX11-1.8.12,1: .......... done [pkg.DaveG.ca] `-- Installing libXext-1.3.6,1... [pkg.DaveG.ca] `-- Extracting libXext-1.3.6,1: .......... done [pkg.DaveG.ca] Extracting libglvnd-1.7.0: .......... done ===> py311-pymol-3.0.0_2 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so) ===> Returning to build of py311-pymol-3.0.0_2 ===> py311-pymol-3.0.0_2 depends on shared library: libGLEW.so - not found ===> Installing existing package /packages/All/glew-2.2.0_3.pkg [pkg.DaveG.ca] Installing glew-2.2.0_3... [pkg.DaveG.ca] `-- Installing libGLU-9.0.3... [pkg.DaveG.ca] `-- Extracting libGLU-9.0.3: ..... done [pkg.DaveG.ca] Extracting glew-2.2.0_3: .......... done ===> py311-pymol-3.0.0_2 depends on shared library: libGLEW.so - found (/usr/local/lib/libGLEW.so) ===> Returning to build of py311-pymol-3.0.0_2 ===> py311-pymol-3.0.0_2 depends on shared library: libGLU.so - found (/usr/local/lib/libGLU.so) ===> py311-pymol-3.0.0_2 depends on shared library: libxml2.so - not found ===> Installing existing package /packages/All/libxml2-2.15.2.pkg [pkg.DaveG.ca] Installing libxml2-2.15.2... [pkg.DaveG.ca] Extracting libxml2-2.15.2: .......... done ===> py311-pymol-3.0.0_2 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> Returning to build of py311-pymol-3.0.0_2 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-pymol-3.0.0_2 running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-pymol-3.0.0_2 running build running build_py creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311 creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol2 copying modules/pymol2/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol2 copying modules/pymol2/cmd2.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol2 creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt copying modules/pmg_qt/file_dialogs.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt copying modules/pmg_qt/mimic_pmg_tk.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt copying modules/pmg_qt/keymapping.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt copying modules/pmg_qt/builder.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt copying modules/pmg_qt/mimic_tk.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt copying modules/pmg_qt/TextEditor.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt copying modules/pmg_qt/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt copying modules/pmg_qt/advanced_settings_gui.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt copying modules/pmg_qt/scene_bin_gui.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt copying modules/pmg_qt/pymol_gl_widget.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt copying modules/pmg_qt/pymol_qt_gui.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt copying modules/pmg_qt/shortcut_menu_gui.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt copying modules/pmg_qt/volume.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt copying modules/pmg_qt/properties_dialog.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/syntax copying modules/pmg_qt/syntax/python.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/syntax copying modules/pmg_qt/syntax/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/syntax copying modules/pmg_qt/syntax/pml.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/syntax copying modules/pmg_qt/syntax/pmlparser.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/syntax creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk copying modules/pmg_tk/PMGApp.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk copying modules/pmg_tk/TextEditor.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk copying modules/pmg_tk/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk copying modules/pmg_tk/Setting.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk copying modules/pmg_tk/ColorEditor.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk copying modules/pmg_tk/SetEditor.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk copying modules/pmg_tk/Demo.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk copying modules/pmg_tk/volume.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/startup copying modules/pmg_tk/startup/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/startup creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/skins copying modules/pmg_tk/skins/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/skins creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/skins/demo copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/skins/demo creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/builder.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/skins/normal copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/skins/normal creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/api.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/wizarding.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/exporting.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/_gui.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/rpc.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/selector.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/locking.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/preset.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/headering.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/querying.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/cmd.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/colorramping.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/shortcut.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/xray.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/editing.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/selecting.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/keywords.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/creating.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/parsing.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/__main__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/importing.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/povray.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/xwin.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/constants_palette.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/computing.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/movie.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/menu.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/save_shortcut.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/callback.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/cgobuilder.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/shortcut_manager.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/externing.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/editor.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/internal.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/feedingback.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/util.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/gui.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/helping.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/keyboard.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/commanding.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/completing.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/monitoring.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/constants.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/colorprinting.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/lazyio.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/experimenting.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/mpeg_encode.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/fitting.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/parser.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/vfont.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/shortcut_dict.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/morphing.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/pymolhttpd.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/setting.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/viewing.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/controlling.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/moving.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/seqalign.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/cgo.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/checking.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/invocation.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol copying modules/pymol/diagnosing.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/plugins copying modules/pymol/plugins/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/plugins copying modules/pymol/plugins/managergui.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/plugins copying modules/pymol/plugins/repository.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/plugins copying modules/pymol/plugins/legacysupport.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/plugins copying modules/pymol/plugins/managergui_qt.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/plugins copying modules/pymol/plugins/installation.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/plugins creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/sculpting.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/cleanup.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/security.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/message.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/appearance.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/pair_fit.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/charge.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/pseudoatom.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/label.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/renaming.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/command.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/filter.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/openvr.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/density.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/distance.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/nucmutagenesis.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/stereodemo.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/benchmark.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/annotation.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/mutagenesis.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/demo.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/measurement.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/dragging.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/box.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard copying modules/pymol/wizard/toggle.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/Qt copying modules/pymol/Qt/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/Qt copying modules/pymol/Qt/utils.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/Qt creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/stereochemistry copying modules/pymol/stereochemistry/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/stereochemistry creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/cpv.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/mass.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/charge.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/models.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/cif.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/solvate.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/water_residues.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/pkl.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/lst.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/protein_mmff.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/water_amber.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/protein.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/gms.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/io.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/mol.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/pdb.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/dictdb.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/mae.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/protein_amber.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/mol2.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/neighbor.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/sdf.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/map.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/bond_mmff.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/hetatm.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/cc1.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/gamess1.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/brick.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/place.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/protein_residues.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/protein_amber99.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/bonds.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/mmd.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/xyz.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/arc.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy copying modules/chempy/bond_amber.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/bmin copying modules/chempy/bmin/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/bmin copying modules/chempy/bmin/commands.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/bmin copying modules/chempy/bmin/util.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/bmin copying modules/chempy/bmin/state.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/bmin copying modules/chempy/bmin/realtime.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/bmin creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/tinker copying modules/chempy/tinker/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/tinker copying modules/chempy/tinker/amber.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/tinker copying modules/chempy/tinker/state.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/tinker copying modules/chempy/tinker/keyword.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/tinker copying modules/chempy/tinker/realtime.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/tinker creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/fast copying modules/chempy/fast/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/fast creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/champ copying modules/chempy/champ/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/champ copying modules/chempy/champ/amber99.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/champ copying modules/chempy/champ/formal_charges.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/champ copying modules/chempy/champ/assign.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/champ creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/mmtf copying modules/chempy/mmtf/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/mmtf copying modules/chempy/mmtf/io.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/mmtf creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/fragments copying modules/chempy/fragments/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/fragments copying modules/pmg_qt/forms/load_map.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/load_mae.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/load_mtz.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/fetch.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/pluginmanager.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/help_shortcut.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/render.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/pluginitem.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/shortcut_menu.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/colors.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/change_confirm.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/load_aln.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/props.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/save_molecule.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/create_shortcut.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/load_traj.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/png.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/movieexport.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/askpartial.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms copying modules/pmg_qt/forms/save_object.ui -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms running build_ext building 'pymol._cmd' extension creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311 creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/build creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/build/generated creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0 creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1 creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer2 creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer3 creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer4 creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer5 creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/ov creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/ov/src c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD build/generated/ShaderText.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/build/generated/ShaderText.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integers of different signs: 'int' and 'unsigned long' [-Wsign-compare] 545 | for (i=0; ifd) != 3*n) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~ 1 warning generated. c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Bezier.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Bezier.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Block.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Block.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/ContourSurf.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/ContourSurf.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Err.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Err.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Feedback.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Feedback.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Field.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Field.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/File.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/File.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/GFXManager.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/GFXManager.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare] 191 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { | ~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare] 204 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) { | ~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare] 222 | if (input_integer[0] != dcdcordmagic) { | ~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare] 399 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare] 416 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~ 5 warnings generated. c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/CarveHelper.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/CarveHelper.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Crystal.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Crystal.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/GenericBuffer.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/GenericBuffer.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integers of different signs: 'int' and 'unsigned long' [-Wsign-compare] 730 | if (len > sizeof(name)) { | ~~~ ^ ~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integers of different signs: 'int' and 'size_t' (aka 'unsigned long') [-Wsign-compare] 1060 | for (i=0; i<(3 * mmtk->atom_numberdim); i++) { | ~^ ~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Isosurf.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Isosurf.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Map.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Map.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Match.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Match.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Matrix.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Matrix.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/MemoryDebug.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/MemoryDebug.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/MyPNG.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/MyPNG.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Parse.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Parse.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integers of different signs: 'int' and 'unsigned long' [-Wsign-compare] 279 | for (i = 0; i < strlen(line); ++i) { | ~ ^ ~~~~~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:713:9: warning: code will never be executed [-Wunreachable-code] 713 | if (increment_filename(data->filename) != 0) return MOLFILE_EOF; | ^~~~~~~~~~~~~~~~~~ 2 warnings generated. c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Pixmap.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Pixmap.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/ShaderMgr.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/ShaderMgr.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/ShaderPreprocessor.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/ShaderPreprocessor.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/ShaderPrg.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/ShaderPrg.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Sphere.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Sphere.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/TTT.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/TTT.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/GraphicsUtil.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/GraphicsUtil.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Tetsurf.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Tetsurf.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Texture.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Texture.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Tracker.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Tracker.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/MemoryUsage.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/MemoryUsage.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Util.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Util.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Util2.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Util2.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Word.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Word.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/ccealignmodule.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/ccealignmodule.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/PostProcess.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/PostProcess.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Triangle.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Triangle.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/Vector.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/Vector.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/marching_cubes.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/marching_cubes.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer0/os_gl.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer0/os_gl.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/Basis.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/Basis.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/ButMode.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/ButMode.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/CGO.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/CGO.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/CGORenderer.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/CGORenderer.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/COLLADA.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/COLLADA.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integers of different signs: 'unsigned long' and 'int' [-Wsign-compare] 782 | if (strlen(atoms[i].type) > fw) { | ~~~~~~~~~~~~~~~~~~~~~ ^ ~~ 1 warning generated. In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integers of different signs: 'int' and 'unsigned long' [-Wsign-compare] 545 | for (i=0; inbonds + bnum; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable 'bondTable' [-Wunused-variable] 984 | int bondTable[32]; | ^~~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable 'j' [-Wunused-variable] 988 | int i, pos, j, k; | ^ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable 'modelNum' [-Wunused-variable] 991 | char modelNum[8]; | ^~~~~~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable 'atom' [-Wunused-variable] 1002 | molfile_atom_t * atom; | ^~~~ contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable 'fd' [-Wunused-variable] 1409 | FILE* fd; | ^~ 13 warnings generated. c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/CGOGL.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/CGOGL.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/Camera.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/Camera.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:392:29: warning: 'sscanf' may overflow; destination buffer in argument 3 has size 255, but the corresponding specifier may require size 256 [-Wfortify-source] 392 | if (sscanf(s, " %255s%n", aid_specifier, &n) < 1) { | ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:414:32: warning: 'sscanf' may overflow; destination buffer in argument 3 has size 255, but the corresponding specifier may require size 256 [-Wfortify-source] 414 | while (sscanf(s, " %255s%n", keyword, &n) == 1) { | ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:797:31: warning: 'sscanf' may overflow; destination buffer in argument 3 has size 255, but the corresponding specifier may require size 256 [-Wfortify-source] 797 | sscanf(line, " %255s%n", s, &n); | ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:819:32: warning: 'sscanf' may overflow; destination buffer in argument 3 has size 255, but the corresponding specifier may require size 256 [-Wfortify-source] 819 | sscanf(line, " %255s%n", s, &n); | ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:829:32: warning: 'sscanf' may overflow; destination buffer in argument 3 has size 255, but the corresponding specifier may require size 256 [-Wfortify-source] 829 | sscanf(line, " %255s%n", s, &n); | ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:839:32: warning: 'sscanf' may overflow; destination buffer in argument 3 has size 255, but the corresponding specifier may require size 256 [-Wfortify-source] 839 | sscanf(line, " %255s%n", s, &n); | ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1048:34: warning: 'sscanf' may overflow; destination buffer in argument 3 has size 255, but the corresponding specifier may require size 256 [-Wfortify-source] 1048 | sscanf(line, " %255s%n", s, &n); | ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1104:34: warning: 'sscanf' may overflow; destination buffer in argument 3 has size 255, but the corresponding specifier may require size 256 [-Wfortify-source] 1104 | sscanf(line, " %255s%n", s, &n); | ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1114:34: warning: 'sscanf' may overflow; destination buffer in argument 3 has size 255, but the corresponding specifier may require size 256 [-Wfortify-source] 1114 | sscanf(line, " %255s%n", s, &n); | ^ contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:1128:34: warning: 'sscanf' may overflow; destination buffer in argument 3 has size 255, but the corresponding specifier may require size 256 [-Wfortify-source] 1128 | sscanf(line, " %255s%n", s, &n); | ^ 10 warnings generated. c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/Character.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/Character.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/Control.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/Control.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/Extrude.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/Extrude.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/FontGLUT8x13.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/FontGLUT9x15.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/FontGLUTHel12.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/FontType.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/FontType.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/Movie.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/Movie.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/Color.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/Color.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/PConv.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/PConv.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/Picking.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/Picking.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/FontGLUTHel10.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/Ortho.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/Ortho.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/Font.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/Font.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/FontGLUTHel18.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DMSGPACK_NO_BOOST -std=c++17 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -D_PYMOL_NO_MSGPACKC -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include -I/usr/local/include/freetype2 -I/usr/local/include/libxml2 -I/usr/local/include/python3.11 -c -MMD layer1/P.cpp -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/layer1/P.o -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O3 -fopenmp In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160: contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integers of different signs: 'int' and 'unsigned long' [-Wsign-compare] 545 | for (i=0; i============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pymol-3.0.0_2 depends on package: py311-msgpack>0 - not found ===> Installing existing package /packages/All/py311-msgpack-1.1.2.pkg [pkg.DaveG.ca] Installing py311-msgpack-1.1.2... [pkg.DaveG.ca] Extracting py311-msgpack-1.1.2: .......... done ===> py311-pymol-3.0.0_2 depends on package: py311-msgpack>0 - found ===> Returning to build of py311-pymol-3.0.0_2 ===> py311-pymol-3.0.0_2 depends on package: py311-Pmw>0 - not found ===> Installing existing package /packages/All/py311-Pmw-2.0.1_2.pkg [pkg.DaveG.ca] Installing py311-Pmw-2.0.1_2... [pkg.DaveG.ca] `-- Installing blt-2.5.3_7... [pkg.DaveG.ca] | `-- Installing jpeg-turbo-3.1.3... [pkg.DaveG.ca] | `-- Extracting jpeg-turbo-3.1.3: .......... done [pkg.DaveG.ca] | `-- Installing tcl86-8.6.17... [pkg.DaveG.ca] | `-- Extracting tcl86-8.6.17: .......... done [pkg.DaveG.ca] | `-- Installing tk86-8.6.17... [pkg.DaveG.ca] | | `-- Installing fontconfig-2.17.1,1... [pkg.DaveG.ca] | | `-- Installing expat-2.7.4... [pkg.DaveG.ca] | | `-- Extracting expat-2.7.4: .......... done [pkg.DaveG.ca] | | `-- Extracting fontconfig-2.17.1,1: .......... done [pkg.DaveG.ca] | | `-- Installing libXScrnSaver-1.2.4_1... 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[pkg.DaveG.ca] `-- Extracting py311-tkinter-3.11.15_11: ...... done [pkg.DaveG.ca] Extracting py311-Pmw-2.0.1_2: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ===> py311-pymol-3.0.0_2 depends on package: py311-Pmw>0 - found ===> Returning to build of py311-pymol-3.0.0_2 ===> py311-pymol-3.0.0_2 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> py311-pymol-3.0.0_2 depends on file: /usr/local/bin/python3.11 - found ===> py311-pymol-3.0.0_2 depends on package: py311-qt5-pyqt>=5.15.11 - not found ===> Installing existing package /packages/All/py311-qt5-pyqt-5.15.11_2.pkg [pkg.DaveG.ca] Installing py311-qt5-pyqt-5.15.11_2... [pkg.DaveG.ca] `-- Installing dbus-1.16.2_4,1... [pkg.DaveG.ca] | `-- Installing libICE-1.1.2,1... [pkg.DaveG.ca] | `-- Extracting libICE-1.1.2,1: .......... done [pkg.DaveG.ca] | `-- Installing libSM-1.2.6,1... 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[pkg.DaveG.ca] | | `-- Extracting vulkan-headers-1.4.336: .......... done [pkg.DaveG.ca] | | `-- Installing xcb-util-image-0.4.1... [pkg.DaveG.ca] | | | `-- Installing xcb-util-0.4.1,1... [pkg.DaveG.ca] | | | `-- Extracting xcb-util-0.4.1,1: .......... done [pkg.DaveG.ca] | | `-- Extracting xcb-util-image-0.4.1: ........ done [pkg.DaveG.ca] | | `-- Installing xcb-util-keysyms-0.4.1... [pkg.DaveG.ca] | | `-- Extracting xcb-util-keysyms-0.4.1: ...... done [pkg.DaveG.ca] | | `-- Installing xcb-util-renderutil-0.3.10... [pkg.DaveG.ca] | | `-- Extracting xcb-util-renderutil-0.3.10: ...... done [pkg.DaveG.ca] | | `-- Installing xcb-util-wm-0.4.2... [pkg.DaveG.ca] | | `-- Extracting xcb-util-wm-0.4.2: .......... done [pkg.DaveG.ca] | | `-- Installing xdg-utils-1.2.1... [pkg.DaveG.ca] | | | `-- Installing hicolor-icon-theme-0.18... [pkg.DaveG.ca] | | | `-- Extracting hicolor-icon-theme-0.18: . done [pkg.DaveG.ca] | | | `-- Installing xprop-1.2.8... [pkg.DaveG.ca] | | | `-- Extracting xprop-1.2.8: .. done [pkg.DaveG.ca] | | | `-- Installing xset-1.2.5_1... [pkg.DaveG.ca] | | | `-- Installing libXmu-1.1.4,1... [pkg.DaveG.ca] | | | | `-- Installing libXt-1.3.0,1... [pkg.DaveG.ca] | | | | `-- Extracting libXt-1.3.0,1: .......... done [pkg.DaveG.ca] | | | `-- Extracting libXmu-1.1.4,1: .......... done [pkg.DaveG.ca] | | | `-- Extracting xset-1.2.5_1: .. done [pkg.DaveG.ca] | | `-- Extracting xdg-utils-1.2.1: .......... done [pkg.DaveG.ca] | | `-- Installing xorg-fonts-truetype-7.7_1... [pkg.DaveG.ca] | | | `-- Installing dejavu-2.37_4... [pkg.DaveG.ca] | | | `-- Installing mkfontscale-1.2.3... [pkg.DaveG.ca] | | | | `-- Installing libfontenc-1.1.8... [pkg.DaveG.ca] | | | | `-- Extracting libfontenc-1.1.8: ...... done [pkg.DaveG.ca] | | | `-- Extracting mkfontscale-1.2.3: .... done [pkg.DaveG.ca] | | | `-- Extracting dejavu-2.37_4: .......... done [pkg.DaveG.ca] | | | `-- Installing font-bh-ttf-1.0.3_5... [pkg.DaveG.ca] | | | `-- Extracting font-bh-ttf-1.0.3_5: .......... done [pkg.DaveG.ca] | | | `-- Installing font-misc-ethiopic-1.0.4... [pkg.DaveG.ca] | | | `-- Extracting font-misc-ethiopic-1.0.4: ... done [pkg.DaveG.ca] | | | `-- Installing font-misc-meltho-1.0.3_5... [pkg.DaveG.ca] | | | `-- Extracting font-misc-meltho-1.0.3_5: .......... done [pkg.DaveG.ca] | | `-- Extracting qt5-gui-5.15.18p109: .......... done [pkg.DaveG.ca] | | `-- Installing qt5-sql-5.15.18p109... [pkg.DaveG.ca] | | `-- Extracting qt5-sql-5.15.18p109: .......... done [pkg.DaveG.ca] | | `-- Installing qt5-widgets-5.15.18p109... [pkg.DaveG.ca] | | `-- Extracting qt5-widgets-5.15.18p109: .......... done [pkg.DaveG.ca] | `-- Extracting qt5-declarative-5.15.18p22: .......... done [pkg.DaveG.ca] `-- Extracting qt5-connectivity-5.15.18p1: .......... done [pkg.DaveG.ca] `-- Installing qt5-designer-5.15.18p3... [pkg.DaveG.ca] | `-- Installing qt5-assistant-5.15.18p3... [pkg.DaveG.ca] | | `-- Installing qt5-help-5.15.18p3... [pkg.DaveG.ca] | | `-- Installing qt5-sqldrivers-sqlite3-5.15.18p109... [pkg.DaveG.ca] | | | `-- Installing sqlite3-3.50.4_2,1... [pkg.DaveG.ca] | | | `-- Installing libedit-3.1.20251016_1,1... [pkg.DaveG.ca] | | | `-- Extracting libedit-3.1.20251016_1,1: .......... done [pkg.DaveG.ca] | | | `-- Extracting sqlite3-3.50.4_2,1: .......... done [pkg.DaveG.ca] | | `-- Extracting qt5-sqldrivers-sqlite3-5.15.18p109: .. done [pkg.DaveG.ca] | | `-- Extracting qt5-help-5.15.18p3: .......... done [pkg.DaveG.ca] | | `-- Installing qt5-printsupport-5.15.18p109... [pkg.DaveG.ca] | | `-- Installing cups-2.4.16... [pkg.DaveG.ca] | | | `-- Installing avahi-app-0.8_6... [pkg.DaveG.ca] | | | `-- Installing dbus-glib-0.114... [pkg.DaveG.ca] | | | `-- Extracting dbus-glib-0.114: .......... done [pkg.DaveG.ca] | | | `-- Installing gdbm-1.26... [pkg.DaveG.ca] | | | `-- Extracting gdbm-1.26: .......... done [pkg.DaveG.ca] | | | `-- Installing gnome_subr-1.0... [pkg.DaveG.ca] | | | `-- Extracting gnome_subr-1.0: . done [pkg.DaveG.ca] | | | `-- Installing libdaemon-0.14_1... [pkg.DaveG.ca] | | | `-- Extracting libdaemon-0.14_1: .......... done [pkg.DaveG.ca] | | | `-- Installing libevent-2.1.12... [pkg.DaveG.ca] | | | `-- Extracting libevent-2.1.12: .......... done ===> Creating groups Creating group 'avahi' with gid '558' ===> Creating users Creating user 'avahi' with uid '558' [pkg.DaveG.ca] | | | `-- Extracting avahi-app-0.8_6: .......... done [pkg.DaveG.ca] | | | `-- Installing gnutls-3.8.12... [pkg.DaveG.ca] | | | `-- Installing libtasn1-4.21.0... [pkg.DaveG.ca] | | | `-- Extracting libtasn1-4.21.0: .......... done [pkg.DaveG.ca] | | | `-- Installing nettle-3.10.2... [pkg.DaveG.ca] | | | `-- Extracting nettle-3.10.2: .......... done [pkg.DaveG.ca] | | | `-- Installing p11-kit-0.26.2... [pkg.DaveG.ca] | | | `-- Extracting p11-kit-0.26.2: .......... done [pkg.DaveG.ca] | | | `-- Extracting gnutls-3.8.12: .......... done [pkg.DaveG.ca] | | | `-- Installing libpaper-1.1.28_1... [pkg.DaveG.ca] | | | `-- Extracting libpaper-1.1.28_1: .......... done ===> Creating groups Creating group 'cups' with gid '193' ===> Creating users Creating user 'cups' with uid '193' [pkg.DaveG.ca] | | `-- Extracting cups-2.4.16: .......... done [pkg.DaveG.ca] | | `-- Extracting qt5-printsupport-5.15.18p109: .......... done [pkg.DaveG.ca] | `-- Extracting qt5-assistant-5.15.18p3: ... done [pkg.DaveG.ca] | `-- Installing qt5-uiplugin-5.15.18p3... [pkg.DaveG.ca] | `-- Extracting qt5-uiplugin-5.15.18p3: .......... done [pkg.DaveG.ca] | `-- Installing qt5-xml-5.15.18p109... [pkg.DaveG.ca] | `-- Extracting qt5-xml-5.15.18p109: .......... done [pkg.DaveG.ca] `-- Extracting qt5-designer-5.15.18p3: .......... done [pkg.DaveG.ca] `-- Installing qt5-imageformats-5.15.18p2... [pkg.DaveG.ca] | `-- Installing jasper-4.2.8... [pkg.DaveG.ca] | `-- Extracting jasper-4.2.8: .......... done [pkg.DaveG.ca] | `-- Installing libmng-2.0.3_3... [pkg.DaveG.ca] | | `-- Installing lcms2-2.18... [pkg.DaveG.ca] | | `-- Installing tiff-4.7.1... [pkg.DaveG.ca] | | | `-- Installing jbigkit-2.1_3... [pkg.DaveG.ca] | | | `-- Extracting jbigkit-2.1_3: .......... done [pkg.DaveG.ca] | | | `-- Installing lerc-4.0.0... [pkg.DaveG.ca] | | | `-- Extracting lerc-4.0.0: ..... done [pkg.DaveG.ca] | | | `-- Installing libdeflate-1.25... [pkg.DaveG.ca] | | | `-- Extracting libdeflate-1.25: .......... done [pkg.DaveG.ca] | | `-- Extracting tiff-4.7.1: .......... done [pkg.DaveG.ca] | | `-- Extracting lcms2-2.18: .......... done [pkg.DaveG.ca] | `-- Extracting libmng-2.0.3_3: ......... done [pkg.DaveG.ca] | `-- Installing webp-1.6.0... [pkg.DaveG.ca] | | `-- Installing giflib-5.2.2... [pkg.DaveG.ca] | | `-- Extracting giflib-5.2.2: .......... done [pkg.DaveG.ca] | `-- Extracting webp-1.6.0: .......... done [pkg.DaveG.ca] `-- Extracting qt5-imageformats-5.15.18p2: .......... done [pkg.DaveG.ca] `-- Installing qt5-location-5.15.18p7... [pkg.DaveG.ca] | `-- Installing qt5-serialport-5.15.18p0... [pkg.DaveG.ca] | `-- Extracting qt5-serialport-5.15.18p0: .......... done [pkg.DaveG.ca] `-- Extracting qt5-location-5.15.18p7: .......... done [pkg.DaveG.ca] `-- Installing qt5-multimedia-5.15.18p2... [pkg.DaveG.ca] | `-- Installing alsa-lib-1.2.15.3... [pkg.DaveG.ca] | `-- Extracting alsa-lib-1.2.15.3: .......... done [pkg.DaveG.ca] | `-- Installing alsa-plugins-1.2.12_2... [pkg.DaveG.ca] | `-- Extracting alsa-plugins-1.2.12_2: .......... done [pkg.DaveG.ca] | `-- Installing gstreamer1-1.28.0... [pkg.DaveG.ca] | | `-- Installing libunwind-20250904... [pkg.DaveG.ca] | | `-- Extracting libunwind-20250904: .......... done [pkg.DaveG.ca] | `-- Extracting gstreamer1-1.28.0: .......... done [pkg.DaveG.ca] | `-- Installing gstreamer1-plugins-1.28.0... [pkg.DaveG.ca] | | `-- Installing iso-codes-4.20.1... [pkg.DaveG.ca] | | `-- Extracting iso-codes-4.20.1: .......... done [pkg.DaveG.ca] | | `-- Installing libdrm-2.4.131,1... [pkg.DaveG.ca] | | `-- Installing libpciaccess-0.18.1_1... [pkg.DaveG.ca] | | | `-- Installing hwdata-0.405,1... [pkg.DaveG.ca] | | | `-- Extracting hwdata-0.405,1: ...... done [pkg.DaveG.ca] | | `-- Extracting libpciaccess-0.18.1_1: ..... done [pkg.DaveG.ca] | | `-- Extracting libdrm-2.4.131,1: .......... done [pkg.DaveG.ca] | | `-- Installing orc-0.4.42... [pkg.DaveG.ca] | | `-- Extracting orc-0.4.42: .......... done [pkg.DaveG.ca] | `-- Extracting gstreamer1-plugins-1.28.0: .......... done [pkg.DaveG.ca] | `-- Installing gstreamer1-plugins-bad-1.28.0... [pkg.DaveG.ca] | | `-- Installing json-glib-1.10.8... [pkg.DaveG.ca] | | `-- Extracting json-glib-1.10.8: .......... done [pkg.DaveG.ca] | | `-- Installing pango-1.56.4_1... [pkg.DaveG.ca] | | `-- Installing fribidi-1.0.16... [pkg.DaveG.ca] | | `-- Extracting fribidi-1.0.16: .......... done [pkg.DaveG.ca] | | `-- Installing libthai-0.1.30... [pkg.DaveG.ca] | | | `-- Installing libdatrie-0.2.14_1... [pkg.DaveG.ca] | | | `-- Extracting libdatrie-0.2.14_1: .......... done [pkg.DaveG.ca] | | `-- Extracting libthai-0.1.30: .......... done [pkg.DaveG.ca] | | `-- Extracting pango-1.56.4_1: .......... done [pkg.DaveG.ca] | `-- Extracting gstreamer1-plugins-bad-1.28.0: .......... done [pkg.DaveG.ca] | `-- Installing libXv-1.0.13,1... [pkg.DaveG.ca] | `-- Extracting libXv-1.0.13,1: .......... done [pkg.DaveG.ca] | `-- Installing openal-soft-1.25.1... [pkg.DaveG.ca] | | `-- Installing libmysofa-1.3.3... [pkg.DaveG.ca] | | `-- Extracting libmysofa-1.3.3: .......... done [pkg.DaveG.ca] | `-- Extracting openal-soft-1.25.1: .......... done [pkg.DaveG.ca] | `-- Installing qt5-opengl-5.15.18p109... [pkg.DaveG.ca] | `-- Extracting qt5-opengl-5.15.18p109: .......... done [pkg.DaveG.ca] `-- Extracting qt5-multimedia-5.15.18p2: .......... done [pkg.DaveG.ca] `-- Installing qt5-quick3d-5.15.18p1... [pkg.DaveG.ca] | `-- Installing assimp-6.0.4... [pkg.DaveG.ca] | `-- Extracting assimp-6.0.4: .......... done [pkg.DaveG.ca] `-- Extracting qt5-quick3d-5.15.18p1: .......... done [pkg.DaveG.ca] `-- Installing qt5-remoteobjects-5.15.18p0... [pkg.DaveG.ca] `-- Extracting qt5-remoteobjects-5.15.18p0: .......... done [pkg.DaveG.ca] `-- Installing qt5-sensors-5.15.18p0... [pkg.DaveG.ca] `-- Extracting qt5-sensors-5.15.18p0: .......... done [pkg.DaveG.ca] `-- Installing qt5-speech-5.15.18p1... [pkg.DaveG.ca] | `-- Installing speech-dispatcher-0.12.1... [pkg.DaveG.ca] | | `-- Installing dotconf-1.4.1_1... [pkg.DaveG.ca] | | `-- Extracting dotconf-1.4.1_1: .......... done [pkg.DaveG.ca] | | `-- Installing espeak-ng-1.52.0_1... [pkg.DaveG.ca] | | `-- Installing pcaudiolib-1.2_2... [pkg.DaveG.ca] | | `-- Extracting pcaudiolib-1.2_2: ..... done [pkg.DaveG.ca] | | `-- Extracting espeak-ng-1.52.0_1: .......... done [pkg.DaveG.ca] | | `-- Installing libsndfile-1.2.2_2... [pkg.DaveG.ca] | | `-- Installing flac-1.5.0,1... [pkg.DaveG.ca] | | | `-- Installing libogg-1.3.6,4... [pkg.DaveG.ca] | | | `-- Extracting libogg-1.3.6,4: .......... done [pkg.DaveG.ca] | | `-- Extracting flac-1.5.0,1: .......... done [pkg.DaveG.ca] | | `-- Installing lame-3.100_5... [pkg.DaveG.ca] | | `-- Extracting lame-3.100_5: .......... done [pkg.DaveG.ca] | | `-- Installing libvorbis-1.3.7_2,3... [pkg.DaveG.ca] | | `-- Extracting libvorbis-1.3.7_2,3: .......... done [pkg.DaveG.ca] | | `-- Installing mpg123-1.33.4... [pkg.DaveG.ca] | | `-- Extracting mpg123-1.33.4: .......... done [pkg.DaveG.ca] | | `-- Installing opus-1.6.1... [pkg.DaveG.ca] | | `-- Extracting opus-1.6.1: .......... done [pkg.DaveG.ca] | | `-- Extracting libsndfile-1.2.2_2: .......... done [pkg.DaveG.ca] | | `-- Installing pulseaudio-17.0_4... [pkg.DaveG.ca] | | `-- Installing consolekit2-1.2.6_6... [pkg.DaveG.ca] | | | `-- Installing libxslt-1.1.45... [pkg.DaveG.ca] | | | `-- Installing libgcrypt-1.12.0_1... [pkg.DaveG.ca] | | | | `-- Installing libgpg-error-1.59... [pkg.DaveG.ca] | | | | `-- Extracting libgpg-error-1.59: .......... done [pkg.DaveG.ca] | | | `-- Extracting libgcrypt-1.12.0_1: .......... done [pkg.DaveG.ca] | | | `-- Extracting libxslt-1.1.45: .......... done [pkg.DaveG.ca] | | | `-- Installing polkit-127... [pkg.DaveG.ca] | | | `-- Installing duktape-lib-2.7.0_1... [pkg.DaveG.ca] | | | `-- Extracting duktape-lib-2.7.0_1: ...... done ===> Creating groups Creating group 'polkitd' with gid '565' ===> Creating users Creating user 'polkitd' with uid '565' [pkg.DaveG.ca] | | | `-- Extracting polkit-127: ......... done [pkg.DaveG.ca] | | `-- Extracting consolekit2-1.2.6_6: ......... done [pkg.DaveG.ca] | | `-- Installing fftw3-3.3.10_5... [pkg.DaveG.ca] | | `-- Extracting fftw3-3.3.10_5: .......... done [pkg.DaveG.ca] | | `-- Installing fftw3-float-3.3.10_5... [pkg.DaveG.ca] | | `-- Extracting fftw3-float-3.3.10_5: .......... done [pkg.DaveG.ca] | | `-- Installing jackit-1.9.22_3... [pkg.DaveG.ca] | | | `-- Installing libsamplerate-0.2.2_1... [pkg.DaveG.ca] | | | `-- Extracting libsamplerate-0.2.2_1: .......... done [pkg.DaveG.ca] | | | `-- Installing libsysinfo-0.0.3_3... [pkg.DaveG.ca] | | | `-- Extracting libsysinfo-0.0.3_3: ...... done [pkg.DaveG.ca] | | `-- Extracting jackit-1.9.22_3: .......... done [pkg.DaveG.ca] | | `-- Installing libXtst-1.2.5... [pkg.DaveG.ca] | | `-- Extracting libXtst-1.2.5: .......... done [pkg.DaveG.ca] | | `-- Installing libltdl-2.5.4... [pkg.DaveG.ca] | | `-- Extracting libltdl-2.5.4: ......... done [pkg.DaveG.ca] | | `-- Installing libsoxr-0.1.3_3... [pkg.DaveG.ca] | | `-- Extracting libsoxr-0.1.3_3: .......... done [pkg.DaveG.ca] | | `-- Installing speexdsp-1.2.1... [pkg.DaveG.ca] | | `-- Extracting speexdsp-1.2.1: .......... done [pkg.DaveG.ca] | | `-- Installing webrtc-audio-processing-1.3_1... [pkg.DaveG.ca] | | | `-- Installing abseil-20250127.1_1... [pkg.DaveG.ca] | | | `-- Extracting abseil-20250127.1_1: .......... done [pkg.DaveG.ca] | | `-- Extracting webrtc-audio-processing-1.3_1: .......... done ===> Creating groups Creating group 'pulse' with gid '563' Creating group 'pulse-access' with gid '564' Creating group 'pulse-rt' with gid '557' ===> Creating users Creating user 'pulse' with uid '563' [pkg.DaveG.ca] | | `-- Extracting pulseaudio-17.0_4: .......... done [pkg.DaveG.ca] | `-- Extracting speech-dispatcher-0.12.1: .......... done [pkg.DaveG.ca] `-- Extracting qt5-speech-5.15.18p1: .......... done [pkg.DaveG.ca] `-- Installing qt5-svg-5.15.18p5... [pkg.DaveG.ca] `-- Extracting qt5-svg-5.15.18p5: .......... done [pkg.DaveG.ca] `-- Installing qt5-testlib-5.15.18p109... [pkg.DaveG.ca] `-- Extracting qt5-testlib-5.15.18p109: .......... done [pkg.DaveG.ca] `-- Installing qt5-webchannel-5.15.18p3... [pkg.DaveG.ca] `-- Extracting qt5-webchannel-5.15.18p3: .......... done [pkg.DaveG.ca] `-- Installing qt5-websockets-5.15.18p2... [pkg.DaveG.ca] `-- Extracting qt5-websockets-5.15.18p2: .......... done [pkg.DaveG.ca] `-- Installing qt5-x11extras-5.15.18p0... [pkg.DaveG.ca] `-- Extracting qt5-x11extras-5.15.18p0: .......... done [pkg.DaveG.ca] `-- Installing qt5-xmlpatterns-5.15.18p0... [pkg.DaveG.ca] `-- Extracting qt5-xmlpatterns-5.15.18p0: .......... done [pkg.DaveG.ca] Extracting py311-qt5-pyqt-5.15.11_2: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas ===== Message from libinotify-20240724_3: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from wayland-1.24.0_2: -- Wayland requires XDG_RUNTIME_DIR to be defined to a path that will contain "wayland-%d" unix(4) sockets. This is usually handled by consolekit2 (via ck-launch-session) or pam_xdg (via login). ===== Message from libxkbcommon-1.13.1: -- If arrow keys don't work under X11 switch to legacy rules e.g., For sh/bash/ksh/zsh run and (optionally) add into ~/.profile: export XKB_DEFAULT_RULES=xorg For csh/tcsh run and (optionally) add into ~/.login: setenv XKB_DEFAULT_RULES xorg ===== Message from qt5-sql-5.15.18p109: -- To enable Qt database support, install the database plugin ports. The following plugin ports are available: - databases/qt5-sqldrivers-mysql MySQL - databases/qt5-sqldrivers-odbc Open Database Connectivity - databases/qt5-sqldrivers-pgsql PostgreSQL - databases/qt5-sqldrivers-sqlite2 SQLite 2 - databases/qt5-sqldrivers-sqlite3 SQLite 3 - databases/qt5-sqldrivers-tds FreeTDS ===== Message from alsa-plugins-1.2.12_2: -- ===> NOTICE: The alsa-plugins port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from jackit-1.9.22_3: -- The new JACK server comes with a DBUS control interface: $ jack_control help $ jack_control ds oss $ jack_control dp $ jack_control dps rate 48000 $ jack_control dps wordlength 16 $ jack_control dps capture /dev/dsp0 $ jack_control dps playback /dev/dsp0 $ jack_control eps realtime False $ jack_control start To use real-time priority for JACK server and clients, load the mac_priority(4) module and add the JACK user to the realtime group. Memory locking has to be allowed in /etc/login.conf or ~/.login_conf. Set the resource limit ":memorylocked=unlimited:" and don't forget to run # cap_mkdb /etc/login.conf It's still possible to start JACK server as an RC service for a dedicated user. Note that only one JACK server can be run at a time. An /etc/rc.conf example: jackd_enable="YES" jackd_user="joe" jackd_args="--no-realtime -doss -r48000 -p1024 -w16 \ --capture /dev/dsp0 --playback /dev/dsp0" Official JACK example clients and tools are available as jack-example-tools. JACK 1.9.22 introduces a latency correction fix. Latency correction parameters have to be measured again after an update. ===== Message from pulseaudio-17.0_4: -- Pulseaudio tries to determine default values for FreeBSD OSS driver at first start, based on /dev/sndstat output. The hw.snd.default_unit sysctl may affect these values, but restart of the Pulseaudio might be needed to rescan it again, e.g. `pacmd exit`. Pulseaudio has separate input and output configure lines. You can change them with using following commands: To change the default sink (output): # pacmd set-default-sink 3 To change the default source (input): # pacmd set-default-source 3 This can also be set in /usr/local/etc/pulse/default.pa Replace the number '3' with the new default you want to set. The audio/freedesktop-sound-theme is needed if the default sound files are uncommented in the /usr/local/etc/pulse/default.pa file. ===> py311-pymol-3.0.0_2 depends on package: py311-qt5-pyqt>=5.15.11 - found ===> Returning to build of py311-pymol-3.0.0_2 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py311-pymol-3.0.0_2 ===> Generating temporary packing list running install running build running build_py running build_ext running install_lib creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11 creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol2 copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol2/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol2 copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol2/cmd2.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol2 creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/file_dialogs.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/mimic_pmg_tk.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/keymapping.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/builder.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/mimic_tk.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/TextEditor.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/advanced_settings_gui.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/scene_bin_gui.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/pymol_gl_widget.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/pymol_qt_gui.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/shortcut_menu_gui.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/volume.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/syntax copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/syntax/python.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/syntax copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/syntax/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/syntax copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/syntax/pml.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/syntax copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/syntax/pmlparser.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/syntax copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/properties_dialog.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/load_map.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/load_mae.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/load_mtz.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/fetch.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/pluginmanager.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/help_shortcut.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/render.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/pluginitem.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/shortcut_menu.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/colors.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/change_confirm.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/load_aln.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/props.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/save_molecule.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/create_shortcut.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/load_traj.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/png.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/movieexport.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/askpartial.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_qt/forms/save_object.ui -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/PMGApp.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/TextEditor.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/startup copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/startup/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/startup copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/Setting.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/ColorEditor.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/PyMOLMapLoad.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/skins copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/skins/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/skins creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/skins/demo copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/skins/demo/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/skins/demo creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/skins/normal copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/skins/normal/builder.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/skins/normal copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/skins/normal/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/skins/normal copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/skins/normal/ModalWindow.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/skins/normal copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/SetEditor.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/Demo.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pmg_tk/volume.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/api.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizarding.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/exporting.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/_gui.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/rpc.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/selector.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/locking.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/preset.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/headering.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/querying.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/cmd.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/colorramping.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/plugins copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/plugins/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/plugins copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/plugins/managergui.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/plugins copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/plugins/repository.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/plugins copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/plugins/legacysupport.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/plugins copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/plugins/managergui_qt.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/plugins copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/plugins/installation.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/plugins copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/shortcut.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/xray.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/editing.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/selecting.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/keywords.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/creating.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/parsing.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/__main__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/importing.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/povray.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/xwin.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/constants_palette.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/computing.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/movie.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/menu.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/save_shortcut.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/callback.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/cgobuilder.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/shortcut_manager.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/sculpting.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/cleanup.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/security.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/message.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/appearance.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/pair_fit.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/charge.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/pseudoatom.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/label.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/renaming.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/command.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/filter.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/openvr.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/density.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/distance.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/nucmutagenesis.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/stereodemo.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/benchmark.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/annotation.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/mutagenesis.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/demo.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/measurement.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/dragging.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/box.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/wizard/toggle.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/externing.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/editor.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/internal.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/feedingback.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/util.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/gui.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/helping.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/keyboard.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/commanding.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/completing.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/monitoring.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/constants.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/colorprinting.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/lazyio.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/experimenting.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/mpeg_encode.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/fitting.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/parser.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/vfont.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/shortcut_dict.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/morphing.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/pymolhttpd.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/setting.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/viewing.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/controlling.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/moving.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/seqalign.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/cgo.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/_cmd.cpython-311.so -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/checking.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/Qt copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/Qt/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/Qt copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/Qt/utils.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/Qt copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/invocation.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/diagnosing.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/stereochemistry copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pymol/stereochemistry/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/stereochemistry creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/cpv.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/mass.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/charge.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/models.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/cif.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/solvate.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/bmin copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/bmin/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/bmin copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/bmin/commands.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/bmin copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/bmin/util.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/bmin copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/bmin/state.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/bmin copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/bmin/realtime.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/bmin copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/water_residues.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/pkl.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/tinker copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/tinker/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/tinker copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/tinker/amber.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/tinker copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/tinker/state.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/tinker copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/tinker/keyword.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/tinker copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/tinker/realtime.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/tinker creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/fast copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/fast/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/fast copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/lst.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/protein_mmff.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/water_amber.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/protein.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/gms.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/io.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/mol.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/pdb.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/dictdb.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/mae.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/protein_amber.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/mol2.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/neighbor.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/sdf.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/map.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/bond_mmff.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/champ copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/champ/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/champ copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/champ/amber99.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/champ copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/champ/formal_charges.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/champ copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/champ/assign.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/champ copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/champ/_champ.cpython-311.so -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/champ copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/hetatm.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/cc1.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/gamess1.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/brick.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/place.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/protein_residues.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/protein_amber99.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/bonds.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/mmd.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/xyz.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/mmtf copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/mmtf/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/mmtf copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/mmtf/io.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/mmtf creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/fragments copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/fragments/__init__.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/fragments copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/arc.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/chempy/bond_amber.py -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol2/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol2/cmd2.py to cmd2.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/keymapping.py to keymapping.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/builder.py to builder.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/TextEditor.py to TextEditor.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/scene_bin_gui.py to scene_bin_gui.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/shortcut_menu_gui.py to shortcut_menu_gui.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/volume.py to volume.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/syntax/python.py to python.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/syntax/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/syntax/pml.py to pml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_qt/forms/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/PMGApp.py to PMGApp.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/TextEditor.py to TextEditor.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/startup/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/Setting.py to Setting.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/skins/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/skins/normal/builder.py to builder.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/SetEditor.py to SetEditor.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/Demo.py to Demo.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pmg_tk/volume.py to volume.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/api.py to api.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizarding.py to wizarding.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/exporting.py to exporting.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/_gui.py to _gui.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/rpc.py to rpc.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/selector.py to selector.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/locking.py to locking.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/preset.py to preset.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/headering.py to headering.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/querying.py to querying.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/cmd.py to cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/colorramping.py to colorramping.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/plugins/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/plugins/managergui.py to managergui.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/plugins/repository.py to repository.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/plugins/installation.py to installation.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/shortcut.py to shortcut.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/xray.py to xray.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/editing.py to editing.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/selecting.py to selecting.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/keywords.py to keywords.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/creating.py to creating.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/parsing.py to parsing.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/__main__.py to __main__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/importing.py to importing.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/povray.py to povray.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/xwin.py to xwin.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/constants_palette.py to constants_palette.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/computing.py to computing.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/movie.py to movie.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/menu.py to menu.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/save_shortcut.py to save_shortcut.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/callback.py to callback.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/cgobuilder.py to cgobuilder.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/shortcut_manager.py to shortcut_manager.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/sculpting.py to sculpting.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/cleanup.py to cleanup.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/security.py to security.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/message.py to message.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/appearance.py to appearance.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/charge.py to charge.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/label.py to label.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/renaming.py to renaming.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/command.py to command.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/filter.py to filter.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/openvr.py to openvr.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/density.py to density.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/distance.py to distance.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/benchmark.py to benchmark.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/annotation.py to annotation.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/demo.py to demo.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/measurement.py to measurement.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/dragging.py to dragging.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/box.py to box.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/wizard/toggle.py to toggle.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/externing.py to externing.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/editor.py to editor.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/internal.py to internal.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/feedingback.py to feedingback.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/util.py to util.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/gui.py to gui.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/helping.py to helping.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/keyboard.py to keyboard.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/commanding.py to commanding.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/completing.py to completing.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/monitoring.py to monitoring.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/constants.py to constants.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/colorprinting.py to colorprinting.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/lazyio.py to lazyio.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/experimenting.py to experimenting.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/mpeg_encode.py to mpeg_encode.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/fitting.py to fitting.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/parser.py to parser.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/vfont.py to vfont.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/shortcut_dict.py to shortcut_dict.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/morphing.py to morphing.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/setting.py to setting.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/viewing.py to viewing.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/controlling.py to controlling.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/moving.py to moving.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/seqalign.py to seqalign.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/cgo.py to cgo.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/checking.py to checking.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/Qt/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/Qt/utils.py to utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/invocation.py to invocation.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/diagnosing.py to diagnosing.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/stereochemistry/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/cpv.py to cpv.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/mass.py to mass.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/charge.py to charge.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/models.py to models.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/cif.py to cif.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/solvate.py to solvate.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/bmin/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/bmin/commands.py to commands.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/bmin/util.py to util.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/bmin/state.py to state.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/bmin/realtime.py to realtime.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/water_residues.py to water_residues.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/pkl.py to pkl.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/tinker/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/tinker/amber.py to amber.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/tinker/state.py to state.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/tinker/keyword.py to keyword.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/tinker/realtime.py to realtime.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/fast/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/lst.py to lst.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/protein_mmff.py to protein_mmff.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/water_amber.py to water_amber.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/protein.py to protein.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/gms.py to gms.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/io.py to io.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/mol.py to mol.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/pdb.py to pdb.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/dictdb.py to dictdb.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/mae.py to mae.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/protein_amber.py to protein_amber.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/mol2.py to mol2.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/neighbor.py to neighbor.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/sdf.py to sdf.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/map.py to map.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/bond_mmff.py to bond_mmff.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/champ/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/champ/amber99.py to amber99.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/champ/formal_charges.py to formal_charges.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/champ/assign.py to assign.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/hetatm.py to hetatm.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/cc1.py to cc1.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/gamess1.py to gamess1.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/brick.py to brick.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/place.py to place.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/protein_residues.py to protein_residues.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/protein_amber99.py to protein_amber99.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/bonds.py to bonds.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/mmd.py to mmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/xyz.py to xyz.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/mmtf/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/mmtf/io.py to io.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/fragments/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/arc.py to arc.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/chempy/bond_amber.py to bond_amber.cpython-311.pyc writing byte-compilation script '/tmp/tmp2zlciws7.py' /usr/local/bin/python3.11 /tmp/tmp2zlciws7.py removing /tmp/tmp2zlciws7.py running install_egg_info running egg_info creating pymol.egg-info writing pymol.egg-info/PKG-INFO writing dependency_links to pymol.egg-info/dependency_links.txt writing top-level names to pymol.egg-info/top_level.txt writing manifest file 'pymol.egg-info/SOURCES.txt' /usr/local/lib/python3.11/site-packages/setuptools/command/egg_info.py:632: SetuptoolsDeprecationWarning: Custom 'build_py' does not implement 'get_data_files_without_manifest'. Please extend command classes from setuptools instead of distutils. warnings.warn( reading manifest file 'pymol.egg-info/SOURCES.txt' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'pymol.egg-info/SOURCES.txt' Copying pymol.egg-info to /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol-3.0.0-py3.11.egg-info writing list of installed files to '/wrkdirs/usr/ports/science/py-pymol/work-py311/.PLIST.pymodtmp' creating /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/pymol_path copying LICENSE -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/pymol_path copying data -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/pymol_path/data copying test -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/pymol_path/test copying examples -> /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol/pymol_path/examples ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/pymol --> bin/pymol-3.11 Link: @bin/pymol --> bin/pymol-3.11 ====> Compressing man pages (compress-man) if [ -d "/wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol-3.0.0-py3.11.egg-info" ]; then /bin/ls /wrkdirs/usr/ports/science/py-pymol/work-py311/stage/usr/local/lib/python3.11/site-packages/pymol-3.0.0-py3.11.egg-info | while read f; do echo lib/python3.11/site-packages/pymol-3.0.0-py3.11.egg-info/${f} >> /wrkdirs/usr/ports/science/py-pymol/work-py311/.PLIST.mktmp; done; fi; =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-03-12T16:48:02+0000' 'PKG_NOTE_ports_top_git_hash=26b198eb3ee3' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=3068854dd026' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py311-pymol-3.0.0_2 ===> Building py311-pymol-3.0.0_2 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-pymol-3.0.0_2 build of science/py-pymol@py311 | py311-pymol-3.0.0_2 ended at Thu Mar 12 12:49:26 EDT 2026 build time: 00:01:24