=>> Building biology/py-pybigwig build started at Tue Mar 10 19:44:46 EDT 2026 port directory: /usr/ports/biology/py-pybigwig package name: py311-pyBigWig-0.3.22_1 building for: FreeBSD pkg.DaveG.ca 14.4-RELEASE FreeBSD 14.4-RELEASE 1404000 amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 515 Mar 10 2025 /usr/ports/biology/py-pybigwig/Makefile Ports top last git commit: 26b198eb3ee3 Ports top unclean checkout: no Port dir last git commit: 06a08e69f3ac Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1404000 Job Id: 10 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1404000 UNAME_v=FreeBSD 14.4-RELEASE 1404000 UNAME_r=14.4-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/10/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_14_4_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-pybigwig/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-pybigwig/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-pybigwig/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-pybigwig/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-pybigwig/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-pybigwig/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-pybigwig/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-pybigwig/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-pybigwig/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-pybigwig/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-pybigwig/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-pybigwig/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/pyBigWig" EXAMPLESDIR="share/examples/pyBigWig" DATADIR="share/pyBigWig" WWWDIR="www/pyBigWig" ETCDIR="etc/pyBigWig" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pyBigWig DOCSDIR=/usr/local/share/doc/pyBigWig EXAMPLESDIR=/usr/local/share/examples/pyBigWig WWWDIR=/usr/local/www/pyBigWig ETCDIR=/usr/local/etc/pyBigWig --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pyBigWig-0.3.22_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.6.2.pkg [pkg.DaveG.ca] Installing pkg-2.6.2... [pkg.DaveG.ca] Extracting pkg-2.6.2: .......... done ===> py311-pyBigWig-0.3.22_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-pyBigWig-0.3.22_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-pyBigWig-0.3.22_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-pyBigWig-0.3.22_1 for building => SHA256 Checksum OK for pyBigWig-0.3.22.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-pyBigWig-0.3.22_1 for building ===> Extracting for py311-pyBigWig-0.3.22_1 => SHA256 Checksum OK for pyBigWig-0.3.22.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-pyBigWig-0.3.22_1 ===> Applying FreeBSD patches for py311-pyBigWig-0.3.22_1 from /usr/ports/biology/py-pybigwig/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pyBigWig-0.3.22_1 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [pkg.DaveG.ca] Installing py311-setuptools-63.1.0_3... [pkg.DaveG.ca] `-- Installing python311-3.11.15... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | `-- Installing readline-8.3.3... [pkg.DaveG.ca] | `-- Extracting readline-8.3.3: .......... done [pkg.DaveG.ca] `-- Extracting python311-3.11.15: .......... done [pkg.DaveG.ca] Extracting py311-setuptools-63.1.0_3: .......... done ===== Message from python311-3.11.15: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-pyBigWig-0.3.22_1 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-pyBigWig-0.3.22_1 ===> py311-pyBigWig-0.3.22_1 depends on file: /usr/local/bin/python3.11 - found ===> py311-pyBigWig-0.3.22_1 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> py311-pyBigWig-0.3.22_1 depends on file: /usr/local/bin/ccache - found ===> Returning to build of py311-pyBigWig-0.3.22_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pyBigWig-0.3.22_1 depends on shared library: libcurl.so - not found ===> Installing existing package /packages/All/curl-8.17.0.pkg [pkg.DaveG.ca] Installing curl-8.17.0... [pkg.DaveG.ca] `-- Installing brotli-1.2.0,1... [pkg.DaveG.ca] `-- Extracting brotli-1.2.0,1: .......... done [pkg.DaveG.ca] `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | `-- Installing libunistring-1.4.2... [pkg.DaveG.ca] | `-- Extracting libunistring-1.4.2: .......... done [pkg.DaveG.ca] `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] `-- Installing libnghttp2-1.68.0... [pkg.DaveG.ca] `-- Extracting libnghttp2-1.68.0: ....... done [pkg.DaveG.ca] `-- Installing libpsl-0.21.5_2... [pkg.DaveG.ca] `-- Extracting libpsl-0.21.5_2: ........ done [pkg.DaveG.ca] `-- Installing libssh2-1.11.1,3... [pkg.DaveG.ca] `-- Extracting libssh2-1.11.1,3: .......... done [pkg.DaveG.ca] `-- Installing zstd-1.5.7_1... [pkg.DaveG.ca] `-- Extracting zstd-1.5.7_1: .......... done [pkg.DaveG.ca] Extracting curl-8.17.0: .......... done ===> py311-pyBigWig-0.3.22_1 depends on shared library: libcurl.so - found (/usr/local/lib/libcurl.so) ===> Returning to build of py311-pyBigWig-0.3.22_1 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-pyBigWig-0.3.22_1 /usr/local/lib/python3.11/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-pyBigWig-0.3.22_1 /usr/local/lib/python3.11/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) running build running build_py creating build creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311 creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pyBigWigTest copying pyBigWigTest/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pyBigWigTest copying pyBigWigTest/test.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pyBigWigTest running egg_info writing pyBigWig.egg-info/PKG-INFO writing dependency_links to pyBigWig.egg-info/dependency_links.txt writing top-level names to pyBigWig.egg-info/top_level.txt reading manifest file 'pyBigWig.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'pyBigWig.egg-info/SOURCES.txt' copying pyBigWigTest/test.bigBed -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pyBigWigTest copying pyBigWigTest/test.bw -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pyBigWigTest running build_ext building 'pyBigWig' extension creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311 creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/libBigWig cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IlibBigWig -I/usr/local/include/python3.11 -I/usr/local/include/python3.11 -c libBigWig/bwRead.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/libBigWig/bwRead.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IlibBigWig -I/usr/local/include/python3.11 -I/usr/local/include/python3.11 -c libBigWig/bwStats.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/libBigWig/bwStats.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IlibBigWig -I/usr/local/include/python3.11 -I/usr/local/include/python3.11 -c libBigWig/bwValues.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/libBigWig/bwValues.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IlibBigWig -I/usr/local/include/python3.11 -I/usr/local/include/python3.11 -c libBigWig/bwWrite.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/libBigWig/bwWrite.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IlibBigWig -I/usr/local/include/python3.11 -I/usr/local/include/python3.11 -c libBigWig/io.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/libBigWig/io.o libBigWig/io.c:17:39: warning: 'CURLINFO_CONTENT_LENGTH_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 17 | if(curl_easy_getinfo(URL->x.curl, CURLINFO_CONTENT_LENGTH_DOWNLOAD, &size) != CURLE_OK) { | ^ /usr/local/include/curl/curl.h:2933:24: note: 'CURLINFO_CONTENT_LENGTH_DOWNLOAD' has been explicitly marked deprecated here 2933 | CURL_DEPRECATED(7.55.0, | ^ /usr/local/include/curl/curl.h:44:18: note: expanded from macro 'CURL_DEPRECATED' 44 | __attribute__((deprecated("since " # version ". " message))) | ^ libBigWig/io.c:17:39: warning: 'CURLINFO_CONTENT_LENGTH_DOWNLOAD' is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 17 | if(curl_easy_getinfo(URL->x.curl, CURLINFO_CONTENT_LENGTH_DOWNLOAD, &size) != CURLE_OK) { | ^ /usr/local/include/curl/curl.h:2933:24: note: 'CURLINFO_CONTENT_LENGTH_DOWNLOAD' has been explicitly marked deprecated here 2933 | CURL_DEPRECATED(7.55.0, | ^ /usr/local/include/curl/curl.h:44:18: note: expanded from macro 'CURL_DEPRECATED' 44 | __attribute__((deprecated("since " # version ". " message))) | ^ libBigWig/io.c:238:16: warning: call to 'Wcurl_easy_setopt_err_long' declared with 'warning' attribute: curl_easy_setopt expects a long argument [-Wattribute-warning] 238 | if(curl_easy_setopt(URL->x.curl, CURLOPT_SSL_VERIFYPEER, 0) != CURLE_OK) { | ^ /usr/local/include/curl/typecheck-gcc.h:50:15: note: expanded from macro 'curl_easy_setopt' 50 | Wcurl_easy_setopt_err_long(); \ | ^ libBigWig/io.c:242:16: warning: call to 'Wcurl_easy_setopt_err_long' declared with 'warning' attribute: curl_easy_setopt expects a long argument [-Wattribute-warning] 242 | if(curl_easy_setopt(URL->x.curl, CURLOPT_SSL_VERIFYHOST, 0) != CURLE_OK) { | ^ /usr/local/include/curl/typecheck-gcc.h:50:15: note: expanded from macro 'curl_easy_setopt' 50 | Wcurl_easy_setopt_err_long(); \ | ^ 4 warnings generated. cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -IlibBigWig -I/usr/local/include/python3.11 -I/usr/local/include/python3.11 -c pyBigWig.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/pyBigWig.o pyBigWig.c:773:12: warning: returning 'const char *' from a function with result type 'char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] 773 | return PyUnicode_AsUTF8(obj); | ^~~~~~~~~~~~~~~~~~~~~ 1 warning generated. cc -shared -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/libBigWig/bwRead.o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/libBigWig/bwStats.o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/libBigWig/bwValues.o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/libBigWig/bwWrite.o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/libBigWig/io.o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/pyBigWig.o -L/usr/local/lib -L/usr/local/lib/python3.11/config-3.11 -L/usr/local/lib -L/usr/local/lib -lm -lz -lpython3.11 -lcurl -o build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pyBigWig.cpython-311.so =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-pyBigWig-0.3.22_1 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py311-pyBigWig-0.3.22_1 ===> Generating temporary packing list /usr/local/lib/python3.11/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) running install /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing pyBigWig.egg-info/PKG-INFO writing dependency_links to pyBigWig.egg-info/dependency_links.txt writing top-level names to pyBigWig.egg-info/top_level.txt reading manifest file 'pyBigWig.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'pyBigWig.egg-info/SOURCES.txt' running build_ext running install_lib creating /wrkdirs/usr/ports/biology/py-pybigwig/work-py311/stage/usr/local/lib/python3.11 creating /wrkdirs/usr/ports/biology/py-pybigwig/work-py311/stage/usr/local/lib/python3.11/site-packages copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pyBigWig.cpython-311.so -> /wrkdirs/usr/ports/biology/py-pybigwig/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/biology/py-pybigwig/work-py311/stage/usr/local/lib/python3.11/site-packages/pyBigWigTest copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pyBigWigTest/__init__.py -> /wrkdirs/usr/ports/biology/py-pybigwig/work-py311/stage/usr/local/lib/python3.11/site-packages/pyBigWigTest copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pyBigWigTest/test.py -> /wrkdirs/usr/ports/biology/py-pybigwig/work-py311/stage/usr/local/lib/python3.11/site-packages/pyBigWigTest copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pyBigWigTest/test.bigBed -> /wrkdirs/usr/ports/biology/py-pybigwig/work-py311/stage/usr/local/lib/python3.11/site-packages/pyBigWigTest copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/pyBigWigTest/test.bw -> /wrkdirs/usr/ports/biology/py-pybigwig/work-py311/stage/usr/local/lib/python3.11/site-packages/pyBigWigTest byte-compiling /wrkdirs/usr/ports/biology/py-pybigwig/work-py311/stage/usr/local/lib/python3.11/site-packages/pyBigWigTest/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-pybigwig/work-py311/stage/usr/local/lib/python3.11/site-packages/pyBigWigTest/test.py to test.cpython-311.pyc writing byte-compilation script '/tmp/tmpu1tw89ub.py' /usr/local/bin/python3.11 /tmp/tmpu1tw89ub.py removing /tmp/tmpu1tw89ub.py running install_egg_info Copying pyBigWig.egg-info to /wrkdirs/usr/ports/biology/py-pybigwig/work-py311/stage/usr/local/lib/python3.11/site-packages/pyBigWig-0.3.22-py3.11.egg-info running install_scripts writing list of installed files to '/wrkdirs/usr/ports/biology/py-pybigwig/work-py311/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-03-10T23:44:46+0000' 'PKG_NOTE_ports_top_git_hash=26b198eb3ee3' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=06a08e69f3ac' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py311-pyBigWig-0.3.22_1 ===> Building py311-pyBigWig-0.3.22_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-pyBigWig-0.3.22_1 build of biology/py-pybigwig@py311 | py311-pyBigWig-0.3.22_1 ended at Tue Mar 10 19:45:03 EDT 2026 build time: 00:00:18