=>> Building biology/py-macs2 build started at Sun Nov 9 22:21:52 EST 2025 port directory: /usr/ports/biology/py-macs2 package name: py311-macs2-2.2.9.1_1 building for: FreeBSD pkg.DaveG.ca 15.0-ALPHA3 FreeBSD 15.0-ALPHA3 1500064 amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 938 Mar 10 2025 /usr/ports/biology/py-macs2/Makefile Ports top last git commit: ec159283c191 Ports top unclean checkout: no Port dir last git commit: 06a08e69f3ac Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1500064 Job Id: 14 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500064 UNAME_v=FreeBSD 15.0-ALPHA3 1500064 UNAME_r=15.0-ALPHA3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/14/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_15_c_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-macs2/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-macs2/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-macs2/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-macs2/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py311-macs2" EXAMPLESDIR="share/examples/py311-macs2" DATADIR="share/py311-macs2" WWWDIR="www/py311-macs2" ETCDIR="etc/py311-macs2" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py311-macs2 DOCSDIR=/usr/local/share/doc/py311-macs2 EXAMPLESDIR=/usr/local/share/examples/py311-macs2 WWWDIR=/usr/local/www/py311-macs2 ETCDIR=/usr/local/etc/py311-macs2 --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-macs2-2.2.9.1_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.4.2_1.pkg [pkg.DaveG.ca] Installing pkg-2.4.2_1... [pkg.DaveG.ca] Extracting pkg-2.4.2_1: .......... done ===> py311-macs2-2.2.9.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-macs2-2.2.9.1_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-macs2-2.2.9.1_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-macs2-2.2.9.1_1 for building => SHA256 Checksum OK for taoliu-MACS-v2.2.9.1_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-macs2-2.2.9.1_1 for building ===> Extracting for py311-macs2-2.2.9.1_1 => SHA256 Checksum OK for taoliu-MACS-v2.2.9.1_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-macs2-2.2.9.1_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-macs2-2.2.9.1_1 depends on package: py311-numpy>=1.16,1<1.27,1 - not found ===> Installing existing package /packages/All/py311-numpy-1.26.4_10,1.pkg [pkg.DaveG.ca] Installing py311-numpy-1.26.4_10,1... [pkg.DaveG.ca] `-- Installing gcc13-13.3.0_3... [pkg.DaveG.ca] | `-- Installing binutils-2.44,1... [pkg.DaveG.ca] | | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | | `-- Installing zstd-1.5.7... [pkg.DaveG.ca] | | `-- Installing liblz4-1.10.0_2,1... [pkg.DaveG.ca] | | `-- Extracting liblz4-1.10.0_2,1: .......... done [pkg.DaveG.ca] | | `-- Extracting zstd-1.5.7: .......... done [pkg.DaveG.ca] | `-- Extracting binutils-2.44,1: .......... done [pkg.DaveG.ca] | `-- Installing gmp-6.3.0... [pkg.DaveG.ca] | `-- Extracting gmp-6.3.0: .......... done [pkg.DaveG.ca] | `-- Installing mpc-1.3.1_1... [pkg.DaveG.ca] | | `-- Installing mpfr-4.2.2,1... [pkg.DaveG.ca] | | `-- Extracting mpfr-4.2.2,1: .......... done [pkg.DaveG.ca] | `-- Extracting mpc-1.3.1_1: ...... done [pkg.DaveG.ca] `-- Extracting gcc13-13.3.0_3: .......... done [pkg.DaveG.ca] `-- Installing openblas-0.3.30,2... [pkg.DaveG.ca] `-- Extracting openblas-0.3.30,2: .......... done [pkg.DaveG.ca] `-- Installing python311-3.11.14... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.23.1... [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg.DaveG.ca] | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | `-- Installing readline-8.3.1... [pkg.DaveG.ca] | `-- Extracting readline-8.3.1: .......... done [pkg.DaveG.ca] `-- Extracting python311-3.11.14: .......... done [pkg.DaveG.ca] `-- Installing suitesparse-umfpack-6.3.7... [pkg.DaveG.ca] | `-- Installing suitesparse-amd-3.3.4... [pkg.DaveG.ca] | | `-- Installing suitesparse-config-7.12.1... [pkg.DaveG.ca] | | `-- Extracting suitesparse-config-7.12.1: .......... done [pkg.DaveG.ca] | `-- Extracting suitesparse-amd-3.3.4: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-camd-3.3.5... [pkg.DaveG.ca] | `-- Extracting suitesparse-camd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-ccolamd-3.3.5... [pkg.DaveG.ca] | `-- Extracting suitesparse-ccolamd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-cholmod-5.3.4... [pkg.DaveG.ca] | | `-- Installing suitesparse-colamd-3.3.5... [pkg.DaveG.ca] | | `-- Extracting suitesparse-colamd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Extracting suitesparse-cholmod-5.3.4: .......... done [pkg.DaveG.ca] `-- Extracting suitesparse-umfpack-6.3.7: .......... done [pkg.DaveG.ca] Extracting py311-numpy-1.26.4_10,1: .......... done ===== Message from gcc13-13.3.0_3: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python311-3.11.14: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-macs2-2.2.9.1_1 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> Returning to build of py311-macs2-2.2.9.1_1 ===> py311-macs2-2.2.9.1_1 depends on package: py311-cython>=0.29.37<3 - not found ===> Installing existing package /packages/All/py311-cython-0.29.37_2.pkg [pkg.DaveG.ca] Installing py311-cython-0.29.37_2... [pkg.DaveG.ca] Extracting py311-cython-0.29.37_2: .......... done ===> py311-macs2-2.2.9.1_1 depends on package: py311-cython>=0.29.37<3 - found ===> Returning to build of py311-macs2-2.2.9.1_1 ===> py311-macs2-2.2.9.1_1 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [pkg.DaveG.ca] Installing py311-setuptools-63.1.0_3... [pkg.DaveG.ca] Extracting py311-setuptools-63.1.0_3: .......... done ===> py311-macs2-2.2.9.1_1 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-macs2-2.2.9.1_1 ===> py311-macs2-2.2.9.1_1 depends on file: /usr/local/bin/python3.11 - found ===> py311-macs2-2.2.9.1_1 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc13 create symlink for gcc13 (world) create symlink for g++13 create symlink for g++13 (world) create symlink for cpp13 create symlink for cpp13 (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> py311-macs2-2.2.9.1_1 depends on file: /usr/local/bin/ccache - found ===> Returning to build of py311-macs2-2.2.9.1_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-macs2-2.2.9.1_1 Compiling MACS2/Prob.pyx because it changed. Compiling MACS2/IO/Parser.pyx because it changed. Compiling MACS2/Pileup.pyx because it changed. Compiling MACS2/PeakModel.pyx because it changed. Compiling MACS2/PeakDetect.pyx because it changed. Compiling MACS2/Signal.pyx because it changed. Compiling MACS2/IO/PeakIO.pyx because it changed. Compiling MACS2/IO/BedGraphIO.pyx because it changed. Compiling MACS2/IO/FixWidthTrack.pyx because it changed. Compiling MACS2/IO/PairedEndTrack.pyx because it changed. Compiling MACS2/IO/BedGraph.pyx because it changed. Compiling MACS2/IO/ScoreTrack.pyx because it changed. Compiling MACS2/IO/CallPeakUnit.pyx because it changed. [ 1/13] Cythonizing MACS2/IO/BedGraph.pyx [ 2/13] Cythonizing MACS2/IO/BedGraphIO.pyx [ 3/13] Cythonizing MACS2/IO/CallPeakUnit.pyx [ 4/13] Cythonizing MACS2/IO/FixWidthTrack.pyx [ 5/13] Cythonizing MACS2/IO/PairedEndTrack.pyx [ 6/13] Cythonizing MACS2/IO/Parser.pyx [ 7/13] Cythonizing MACS2/IO/PeakIO.pyx [ 8/13] Cythonizing MACS2/IO/ScoreTrack.pyx [ 9/13] Cythonizing MACS2/PeakDetect.pyx [10/13] Cythonizing MACS2/PeakModel.pyx [11/13] Cythonizing MACS2/Pileup.pyx [12/13] Cythonizing MACS2/Prob.pyx [13/13] Cythonizing MACS2/Signal.pyx running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-macs2-2.2.9.1_1 running build running build_py creating build creating build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311 creating build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/OptValidator.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/bdgcmp_cmd.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/callpeak_cmd.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/OutputWriter.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/Constants.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/filterdup_cmd.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/__init__.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/diffpeak_cmd.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/bdgopt_cmd.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/bdgpeakcall_cmd.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/predictd_cmd.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/randsample_cmd.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/refinepeak_cmd.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/cmbreps_cmd.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/bdgbroadcall_cmd.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/bdgdiff_cmd.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/pileup_cmd.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 creating build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO copying MACS2/IO/__init__.py -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO copying MACS2/khash.pxd -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 copying MACS2/cPosValCalculation.pxd -> build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 running build_ext building 'MACS2.Prob' extension creating build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311 creating build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2 cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS2/Prob.c -o build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/Prob.o -w -O3 -ffast-math -g0 cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/Prob.o -L/usr/local/lib -lm -o build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/Prob.cpython-311.so building 'MACS2.IO.Parser' extension creating build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS2/IO/Parser.c -o build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/Parser.o -w -O3 -ffast-math -g0 cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/Parser.o -L/usr/local/lib -o build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/Parser.cpython-311.so building 'MACS2.Pileup' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I./MACS2 -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS2/Pileup.c -o build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/Pileup.o -w -O3 -ffast-math -g0 cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I./MACS2 -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS2/cPosValCalculation.c -o build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/cPosValCalculation.o -w -O3 -ffast-math -g0 cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/Pileup.o build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/cPosValCalculation.o -L/usr/local/lib -o build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/Pileup.cpython-311.so building 'MACS2.PeakModel' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS2/PeakModel.c -o build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/PeakModel.o -w -O3 -ffast-math -g0 cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/PeakModel.o -L/usr/local/lib -o build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/PeakModel.cpython-311.so building 'MACS2.PeakDetect' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c MACS2/PeakDetect.c -o build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/PeakDetect.o -w -O3 -ffast-math -g0 cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/PeakDetect.o -L/usr/local/lib -o build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/PeakDetect.cpython-311.so building 'MACS2.Signal' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS2/Signal.c -o build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/Signal.o -w -O3 -ffast-math -g0 cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/Signal.o -L/usr/local/lib -o build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/Signal.cpython-311.so building 'MACS2.IO.PeakIO' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c MACS2/IO/PeakIO.c -o build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/PeakIO.o -w -O3 -ffast-math -g0 cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/PeakIO.o -L/usr/local/lib -o build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/PeakIO.cpython-311.so building 'MACS2.IO.BedGraphIO' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c MACS2/IO/BedGraphIO.c -o build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math -g0 cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/BedGraphIO.o -L/usr/local/lib -o build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/BedGraphIO.cpython-311.so building 'MACS2.IO.FixWidthTrack' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS2/IO/FixWidthTrack.c -o build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math -g0 cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/FixWidthTrack.o -L/usr/local/lib -o build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/FixWidthTrack.cpython-311.so building 'MACS2.IO.PairedEndTrack' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS2/IO/PairedEndTrack.c -o build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math -g0 cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/PairedEndTrack.o -L/usr/local/lib -o build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/PairedEndTrack.cpython-311.so building 'MACS2.IO.BedGraph' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c MACS2/IO/BedGraph.c -o build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/BedGraph.o -w -O3 -ffast-math -g0 cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/BedGraph.o -L/usr/local/lib -lm -o build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/BedGraph.cpython-311.so building 'MACS2.IO.ScoreTrack' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS2/IO/ScoreTrack.c -o build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math -g0 cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/ScoreTrack.o -L/usr/local/lib -o build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/ScoreTrack.cpython-311.so building 'MACS2.IO.CallPeakUnit' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c MACS2/IO/CallPeakUnit.c -o build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math -g0 cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/CallPeakUnit.o -L/usr/local/lib -o build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/CallPeakUnit.cpython-311.so running build_scripts creating build/scripts-3.11 copying and adjusting bin/macs2 -> build/scripts-3.11 changing mode of build/scripts-3.11/macs2 from 644 to 755 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-macs2-2.2.9.1_1 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> py311-macs2-2.2.9.1_1 depends on package: py311-cykhash>0 - not found ===> Installing existing package /packages/All/py311-cykhash-2.0.1_1.pkg [pkg.DaveG.ca] Installing py311-cykhash-2.0.1_1... [pkg.DaveG.ca] Extracting py311-cykhash-2.0.1_1: .......... done ===> py311-macs2-2.2.9.1_1 depends on package: py311-cykhash>0 - found ===> Returning to build of py311-macs2-2.2.9.1_1 ===> py311-macs2-2.2.9.1_1 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py311-macs2-2.2.9.1_1 ===> Generating temporary packing list running install /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext running build_scripts running install_lib creating /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11 creating /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/OptValidator.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/bdgcmp_cmd.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/khash.pxd -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/callpeak_cmd.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 creating /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/IO copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/__init__.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/IO copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/FixWidthTrack.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/IO copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/BedGraph.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/IO copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/CallPeakUnit.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/IO copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/ScoreTrack.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/IO copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/PeakIO.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/IO copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/PairedEndTrack.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/IO copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/Parser.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/IO copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/IO/BedGraphIO.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/IO copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/OutputWriter.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/Constants.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/filterdup_cmd.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/PeakDetect.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/__init__.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/diffpeak_cmd.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/bdgopt_cmd.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/bdgpeakcall_cmd.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/predictd_cmd.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/randsample_cmd.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/Prob.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/refinepeak_cmd.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/Pileup.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/cmbreps_cmd.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/Signal.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/PeakModel.cpython-311.so -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/bdgbroadcall_cmd.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/bdgdiff_cmd.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/pileup_cmd.py -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 copying build/lib.freebsd-15.0-ALPHA3-amd64-cpython-311/MACS2/cPosValCalculation.pxd -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2 byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/OptValidator.py to OptValidator.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/callpeak_cmd.py to callpeak_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/IO/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/OutputWriter.py to OutputWriter.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/Constants.py to Constants.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/filterdup_cmd.py to filterdup_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/predictd_cmd.py to predictd_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/randsample_cmd.py to randsample_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/pileup_cmd.py to pileup_cmd.cpython-311.pyc writing byte-compilation script '/tmp/tmpiy3bxvie.py' /usr/local/bin/python3.11 /tmp/tmpiy3bxvie.py removing /tmp/tmpiy3bxvie.py running install_egg_info running egg_info creating MACS2.egg-info writing MACS2.egg-info/PKG-INFO writing dependency_links to MACS2.egg-info/dependency_links.txt writing requirements to MACS2.egg-info/requires.txt writing top-level names to MACS2.egg-info/top_level.txt writing manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching '.gitignore' warning: no previously-included files found matching '.travis.yml' warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution no previously-included directories found matching '.github' no previously-included directories found matching 'DOCKER' adding license file 'LICENSE' writing manifest file 'MACS2.egg-info/SOURCES.txt' Copying MACS2.egg-info to /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2-2.2.9.1-py3.11.egg-info running install_scripts copying build/scripts-3.11/macs2 -> /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/bin changing mode of /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/bin/macs2 to 755 writing list of installed files to '/wrkdirs/usr/ports/biology/py-macs2/work-py311/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/macs2 --> bin/macs2-3.11 Link: @bin/macs2 --> bin/macs2-3.11 /usr/bin/strip /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/*.so /wrkdirs/usr/ports/biology/py-macs2/work-py311/stage/usr/local/lib/python3.11/site-packages/MACS2/*/*.so ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-11-10T03:21:52+0000' 'PKG_NOTE_ports_top_git_hash=ec159283c191' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=06a08e69f3ac' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py311-macs2-2.2.9.1_1 ===> Building py311-macs2-2.2.9.1_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-macs2-2.2.9.1_1 build of biology/py-macs2@py311 | py311-macs2-2.2.9.1_1 ended at Sun Nov 9 22:23:44 EST 2025 build time: 00:01:53