=>> Building biology/py-hits build started at Thu Mar 12 19:37:56 EDT 2026 port directory: /usr/ports/biology/py-hits package name: py311-hits-0.1_1 building for: FreeBSD pkg.DaveG.ca 14.4-RELEASE FreeBSD 14.4-RELEASE 1404000 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 451 Mar 10 2025 /usr/ports/biology/py-hits/Makefile Ports top last git commit: 26b198eb3ee3 Ports top unclean checkout: no Port dir last git commit: 06a08e69f3ac Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1404000 Job Id: 11 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1404000 UNAME_v=FreeBSD 14.4-RELEASE 1404000 UNAME_r=14.4-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/11/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_14_4_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-hits/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-hits/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-hits/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-hits/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-hits/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-hits/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-hits/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-hits/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-hits/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-hits/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-hits/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-hits/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/hits" EXAMPLESDIR="share/examples/hits" DATADIR="share/hits" WWWDIR="www/hits" ETCDIR="etc/hits" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/hits DOCSDIR=/usr/local/share/doc/hits EXAMPLESDIR=/usr/local/share/examples/hits WWWDIR=/usr/local/www/hits ETCDIR=/usr/local/etc/hits --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-hits-0.1_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.6.2.pkg [pkg.DaveG.ca] Installing pkg-2.6.2... [pkg.DaveG.ca] Extracting pkg-2.6.2: .......... done ===> py311-hits-0.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-hits-0.1_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-hits-0.1_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-hits-0.1_1 for building => SHA256 Checksum OK for hits-0.1.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-hits-0.1_1 for building ===> Extracting for py311-hits-0.1_1 => SHA256 Checksum OK for hits-0.1.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-hits-0.1_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-hits-0.1_1 depends on package: py311-cython>=3.2.4 - not found ===> Installing existing package /packages/All/py311-cython-3.2.4.pkg [pkg.DaveG.ca] Installing py311-cython-3.2.4... [pkg.DaveG.ca] `-- Installing python311-3.11.15... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | `-- Installing readline-8.3.3... [pkg.DaveG.ca] | `-- Extracting readline-8.3.3: .......... done [pkg.DaveG.ca] `-- Extracting python311-3.11.15: .......... done [pkg.DaveG.ca] Extracting py311-cython-3.2.4: .......... done ===== Message from python311-3.11.15: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-hits-0.1_1 depends on package: py311-cython>=3.2.4 - found ===> Returning to build of py311-hits-0.1_1 ===> py311-hits-0.1_1 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [pkg.DaveG.ca] Installing py311-setuptools-63.1.0_3... [pkg.DaveG.ca] Extracting py311-setuptools-63.1.0_3: .......... done ===> py311-hits-0.1_1 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-hits-0.1_1 ===> py311-hits-0.1_1 depends on file: /usr/local/bin/python3.11 - found ===> py311-hits-0.1_1 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> py311-hits-0.1_1 depends on file: /usr/local/bin/ccache - found ===> Returning to build of py311-hits-0.1_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-hits-0.1_1 running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-hits-0.1_1 running build running build_py creating build creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311 creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/fastq.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/ipython.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/paired_end.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/intensities_illumina.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/mapping_tools.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/genomes.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/variants.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/bus.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/interval.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/external_sort.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/sam.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/adapters.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/sw.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/visualize_structure.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/utilities.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/annotation.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/fasta.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/genetic_code.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits copying hits/gff.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize copying hits/visualize/fastq.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize copying hits/visualize/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize copying hits/visualize/define_igv_colors.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize copying hits/visualize/gels.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize creating build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/external_coffeescript.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/__init__.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/pc.py -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_subset_menu.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/screen_range.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/pc_hover.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_color.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_save_button.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/screen_significance_filter.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_cluster_button.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_two_level_menu.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_size_menu.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/screen_menu.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/screen_scatter_selection.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_heatmap.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_zoom_to_data.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/screen_errorbars_button.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_selection.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_grid.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_menu.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/pc_box_select.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/pc_search.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_case_sensitive.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_alpha.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_label.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_search.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/pc_clear.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/pc_selection.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_annotation_button.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_range.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/screen_search.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_size.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/scatter_label_button.coffee -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive copying hits/visualize/interactive/example_df.txt -> build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive running build_ext Compiling hits/adapters_cython.pyx because it changed. [1/1] Cythonizing hits/adapters_cython.pyx building 'adapters_cython' extension creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311 creating build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/hits cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c hits/adapters_cython.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/hits/adapters_cython.o cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/hits/adapters_cython.o -L/usr/local/lib -o build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/adapters_cython.cpython-311.so Compiling hits/fastq_cython.pyx because it changed. [1/1] Cythonizing hits/fastq_cython.pyx building 'fastq_cython' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c hits/fastq_cython.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/hits/fastq_cython.o hits/fastq_cython.c:18399:28: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare] 18399 | __pyx_t_7 = (__pyx_v_q >= __pyx_v_min_q); | ~~~~~~~~~ ^ ~~~~~~~~~~~~~ hits/fastq_cython.c:18703:28: warning: comparison of integers of different signs: 'unsigned int' and 'int' [-Wsign-compare] 18703 | __pyx_t_7 = (__pyx_v_q >= __pyx_v_min_q); | ~~~~~~~~~ ^ ~~~~~~~~~~~~~ 2 warnings generated. cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/hits/fastq_cython.o -L/usr/local/lib -o build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/fastq_cython.cpython-311.so Compiling hits/sw_cython.pyx because it changed. [1/1] Cythonizing hits/sw_cython.pyx building 'sw_cython' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c hits/sw_cython.c -o build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/hits/sw_cython.o cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-14.4-RELEASE-amd64-cpython-311/hits/sw_cython.o -L/usr/local/lib -o build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/sw_cython.cpython-311.so =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-hits-0.1_1 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py311-hits-0.1_1 ===> Generating temporary packing list running install /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext running install_lib creating /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11 creating /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/fastq.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/ipython.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/paired_end.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/intensities_illumina.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/mapping_tools.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/genomes.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/__init__.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/variants.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/bus.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/interval.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/external_sort.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/sam.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/fastq_cython.cpython-311.so -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/adapters.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/sw.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize_structure.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/utilities.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits creating /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/fastq.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/__init__.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize creating /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/external_coffeescript.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_subset_menu.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/screen_range.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/pc_hover.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_color.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_save_button.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/screen_significance_filter.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_cluster_button.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_two_level_menu.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/example_df.txt -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_size_menu.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/screen_menu.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/__init__.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/screen_scatter_selection.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_heatmap.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_zoom_to_data.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/screen_errorbars_button.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_selection.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_grid.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_menu.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/pc_box_select.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/pc_search.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_case_sensitive.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_alpha.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_label.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_search.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/pc_clear.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/pc_selection.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_annotation_button.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_range.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/screen_search.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/pc.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_size.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/interactive/scatter_label_button.coffee -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/define_igv_colors.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/visualize/gels.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/annotation.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/fasta.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/adapters_cython.cpython-311.so -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/genetic_code.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/sw_cython.cpython-311.so -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits copying build/lib.freebsd-14.4-RELEASE-amd64-cpython-311/hits/gff.py -> /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/fastq.py to fastq.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/ipython.py to ipython.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/paired_end.py to paired_end.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/intensities_illumina.py to intensities_illumina.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/mapping_tools.py to mapping_tools.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/genomes.py to genomes.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/variants.py to variants.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/bus.py to bus.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/interval.py to interval.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/external_sort.py to external_sort.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/sam.py to sam.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/adapters.py to adapters.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/sw.py to sw.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize_structure.py to visualize_structure.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/utilities.py to utilities.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/fastq.py to fastq.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive/external_coffeescript.py to external_coffeescript.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/interactive/pc.py to pc.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/define_igv_colors.py to define_igv_colors.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/visualize/gels.py to gels.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/annotation.py to annotation.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/fasta.py to fasta.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/genetic_code.py to genetic_code.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits/gff.py to gff.cpython-311.pyc writing byte-compilation script '/tmp/tmpxugq_igw.py' /usr/local/bin/python3.11 /tmp/tmpxugq_igw.py removing /tmp/tmpxugq_igw.py running install_egg_info running egg_info writing hits.egg-info/PKG-INFO writing dependency_links to hits.egg-info/dependency_links.txt writing requirements to hits.egg-info/requires.txt writing top-level names to hits.egg-info/top_level.txt reading manifest file 'hits.egg-info/SOURCES.txt' writing manifest file 'hits.egg-info/SOURCES.txt' Copying hits.egg-info to /wrkdirs/usr/ports/biology/py-hits/work-py311/stage/usr/local/lib/python3.11/site-packages/hits-0.1-py3.11.egg-info running install_scripts writing list of installed files to '/wrkdirs/usr/ports/biology/py-hits/work-py311/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-03-12T23:37:56+0000' 'PKG_NOTE_ports_top_git_hash=26b198eb3ee3' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=06a08e69f3ac' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py311-hits-0.1_1 ===> Building py311-hits-0.1_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-hits-0.1_1 build of biology/py-hits@py311 | py311-hits-0.1_1 ended at Thu Mar 12 19:38:29 EDT 2026 build time: 00:00:33