=>> Building science/py-gsd build started at Mon Jan 19 10:58:30 EST 2026 port directory: /usr/ports/science/py-gsd package name: py311-gsd-3.4.1_1 building for: FreeBSD pkg.DaveG.ca 14.3-RELEASE-p7 FreeBSD 14.3-RELEASE-p7 1403000 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 933 Mar 10 2025 /usr/ports/science/py-gsd/Makefile Ports top last git commit: 076a295eb33c Ports top unclean checkout: no Port dir last git commit: 06a08e69f3ac Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1403000 Job Id: 07 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1403000 UNAME_v=FreeBSD 14.3-RELEASE-p7 1403000 UNAME_r=14.3-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=xterm-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/07/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_14_3_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-gsd/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-gsd/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-gsd/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-gsd/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-gsd/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-gsd/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-gsd/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-gsd/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-gsd/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-gsd/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-gsd/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-gsd/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/gsd" EXAMPLESDIR="share/examples/gsd" DATADIR="share/gsd" WWWDIR="www/gsd" ETCDIR="etc/gsd" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gsd DOCSDIR=/usr/local/share/doc/gsd EXAMPLESDIR=/usr/local/share/examples/gsd WWWDIR=/usr/local/www/gsd ETCDIR=/usr/local/etc/gsd --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-gsd-3.4.1_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.5.1.pkg [pkg.DaveG.ca] Installing pkg-2.5.1... [pkg.DaveG.ca] Extracting pkg-2.5.1: .......... done ===> py311-gsd-3.4.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-gsd-3.4.1_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-gsd-3.4.1_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-gsd-3.4.1_1 for building => SHA256 Checksum OK for gsd-3.4.1.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-gsd-3.4.1_1 for building ===> Extracting for py311-gsd-3.4.1_1 => SHA256 Checksum OK for gsd-3.4.1.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-gsd-3.4.1_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-gsd-3.4.1_1 depends on package: py311-numpy>=1.16,1<1.27,1 - not found ===> Installing existing package /packages/All/py311-numpy-1.26.4_12,1.pkg [pkg.DaveG.ca] Installing py311-numpy-1.26.4_12,1... [pkg.DaveG.ca] `-- Installing gcc14-14.2.0_4... [pkg.DaveG.ca] | `-- Installing binutils-2.44,1... [pkg.DaveG.ca] | | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | | `-- Installing zstd-1.5.7_1... [pkg.DaveG.ca] | | `-- Extracting zstd-1.5.7_1: .......... done [pkg.DaveG.ca] | `-- Extracting binutils-2.44,1: .......... done [pkg.DaveG.ca] | `-- Installing gmp-6.3.0... [pkg.DaveG.ca] | `-- Extracting gmp-6.3.0: .......... done [pkg.DaveG.ca] | `-- Installing mpc-1.3.1_1... [pkg.DaveG.ca] | | `-- Installing mpfr-4.2.2,1... [pkg.DaveG.ca] | | `-- Extracting mpfr-4.2.2,1: .......... done [pkg.DaveG.ca] | `-- Extracting mpc-1.3.1_1: ...... done [pkg.DaveG.ca] `-- Extracting gcc14-14.2.0_4: .......... done [pkg.DaveG.ca] `-- Installing openblas-0.3.30,2... [pkg.DaveG.ca] `-- Extracting openblas-0.3.30,2: .......... done [pkg.DaveG.ca] `-- Installing python311-3.11.14... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | `-- Installing readline-8.3.3... [pkg.DaveG.ca] | `-- Extracting readline-8.3.3: .......... done [pkg.DaveG.ca] `-- Extracting python311-3.11.14: .......... done [pkg.DaveG.ca] `-- Installing suitesparse-umfpack-6.3.7... [pkg.DaveG.ca] | `-- Installing suitesparse-amd-3.3.4... [pkg.DaveG.ca] | | `-- Installing suitesparse-config-7.12.1... [pkg.DaveG.ca] | | `-- Extracting suitesparse-config-7.12.1: .......... done [pkg.DaveG.ca] | `-- Extracting suitesparse-amd-3.3.4: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-camd-3.3.5... [pkg.DaveG.ca] | `-- Extracting suitesparse-camd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-ccolamd-3.3.5... [pkg.DaveG.ca] | `-- Extracting suitesparse-ccolamd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-cholmod-5.3.4... [pkg.DaveG.ca] | | `-- Installing suitesparse-colamd-3.3.5... [pkg.DaveG.ca] | | `-- Extracting suitesparse-colamd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Extracting suitesparse-cholmod-5.3.4: .......... done [pkg.DaveG.ca] `-- Extracting suitesparse-umfpack-6.3.7: .......... done [pkg.DaveG.ca] Extracting py311-numpy-1.26.4_12,1: .......... done ===== Message from gcc14-14.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python311-3.11.14: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-gsd-3.4.1_1 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> Returning to build of py311-gsd-3.4.1_1 ===> py311-gsd-3.4.1_1 depends on package: py311-cython>=3.2.4 - not found ===> Installing existing package /packages/All/py311-cython-3.2.4.pkg [pkg.DaveG.ca] Installing py311-cython-3.2.4... [pkg.DaveG.ca] Extracting py311-cython-3.2.4: .......... done ===> py311-gsd-3.4.1_1 depends on package: py311-cython>=3.2.4 - found ===> Returning to build of py311-gsd-3.4.1_1 ===> py311-gsd-3.4.1_1 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [pkg.DaveG.ca] Installing py311-setuptools-63.1.0_3... [pkg.DaveG.ca] Extracting py311-setuptools-63.1.0_3: .......... done ===> py311-gsd-3.4.1_1 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-gsd-3.4.1_1 ===> py311-gsd-3.4.1_1 depends on file: /usr/local/bin/python3.11 - found ===> py311-gsd-3.4.1_1 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc14 create symlink for gcc14 (world) create symlink for g++14 create symlink for g++14 (world) create symlink for cpp14 create symlink for cpp14 (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> py311-gsd-3.4.1_1 depends on file: /usr/local/bin/ccache - found ===> Returning to build of py311-gsd-3.4.1_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-gsd-3.4.1_1 Compiling gsd/fl.pyx because it changed. [1/1] Cythonizing gsd/fl.pyx /usr/local/lib/python3.11/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-gsd-3.4.1_1 /usr/local/lib/python3.11/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) running build running build_py creating build creating build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311 creating build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd copying gsd/pytest_plugin_validate.py -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd copying gsd/pygsd.py -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd copying gsd/conftest.py -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd copying gsd/__main__.py -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd copying gsd/__init__.py -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd copying gsd/version.py -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd copying gsd/hoomd.py -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd creating build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/test copying gsd/test/test_largefile.py -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/test copying gsd/test/test_fl.py -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/test copying gsd/test/conftest.py -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/test copying gsd/test/test_hoomd.py -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/test running egg_info writing gsd.egg-info/PKG-INFO writing dependency_links to gsd.egg-info/dependency_links.txt writing entry points to gsd.egg-info/entry_points.txt writing requirements to gsd.egg-info/requires.txt writing top-level names to gsd.egg-info/top_level.txt reading manifest file 'gsd.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'gsd.egg-info/SOURCES.txt' copying gsd/fl.c -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd copying gsd/fl.pyx -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd copying gsd/gsd.c -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd copying gsd/gsd.h -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd copying gsd/libgsd.pxd -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd copying gsd/test/pytest.ini -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/test copying gsd/test/test_gsd_v1.gsd -> build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/test running build_ext building 'gsd.fl' extension creating build/temp.freebsd-14.3-RELEASE-p7-amd64-cpython-311 creating build/temp.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Igsd -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c gsd/fl.c -o build/temp.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/fl.o cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Igsd -I/usr/local/lib/python3.11/site-packages/numpy/core/include -I/usr/local/include/python3.11 -c gsd/gsd.c -o build/temp.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/gsd.o gsd/gsd.c:1006:44: warning: comparison of integers of different signs: 'ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 1006 | if (bytes_read == -1 || bytes_read != bytes_to_copy) | ~~~~~~~~~~ ^ ~~~~~~~~~~~~~ gsd/gsd.c:1017:50: warning: comparison of integers of different signs: 'ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 1017 | if (bytes_written == -1 || bytes_written != bytes_to_copy) | ~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~ gsd/gsd.c:1043:50: warning: comparison of integers of different signs: 'ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 1043 | if (bytes_written == -1 || bytes_written != bytes_to_copy) | ~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~ gsd/gsd.c:1131:46: warning: comparison of integers of different signs: 'ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 1131 | if (bytes_written == -1 || bytes_written != handle->write_buffer.size) | ~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~~~~~~ gsd/gsd.c:1223:50: warning: comparison of integers of different signs: 'ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 1223 | if (bytes_written == -1 || bytes_written != handle->file_names.data.reserved) | ~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gsd/gsd.c:1256:27: warning: comparison of integers of different signs: 'ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 1256 | if (bytes_written != (handle->file_names.data.reserved - old_size)) | ~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gsd/gsd.c:1520:40: warning: comparison of integers of different signs: 'ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 1520 | if (bytes_read == -1 || bytes_read != namelist_n_bytes) | ~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~ gsd/gsd.c:2024:50: warning: comparison of integers of different signs: 'ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 2024 | if (bytes_written == -1 || bytes_written != bytes_to_write) | ~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~ gsd/gsd.c:2157:50: warning: comparison of integers of different signs: 'ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 2157 | if (bytes_written == -1 || bytes_written != size) | ~~~~~~~~~~~~~ ^ ~~~~ gsd/gsd.c:2318:40: warning: comparison of integers of different signs: 'ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 2318 | if (bytes_read == -1 || bytes_read != size) | ~~~~~~~~~~ ^ ~~~~ gsd/gsd.c:2506:54: warning: comparison of integers of different signs: 'ssize_t' (aka 'long') and 'unsigned long' [-Wsign-compare] 2506 | if (bytes_written == -1 || bytes_written != sizeof(struct gsd_index_entry) * buf.size) | ~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gsd/gsd.c:2561:54: warning: comparison of integers of different signs: 'ssize_t' (aka 'long') and 'size_t' (aka 'unsigned long') [-Wsign-compare] 2561 | if (bytes_written == -1 || bytes_written != new_name_buf.reserved) | ~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~~ 12 warnings generated. cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/fl.o build/temp.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/gsd.o -L/usr/local/lib -o build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/fl.cpython-311.so =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-gsd-3.4.1_1 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> py311-gsd-3.4.1_1 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py311-gsd-3.4.1_1 ===> Generating temporary packing list /usr/local/lib/python3.11/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) running install /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing gsd.egg-info/PKG-INFO writing dependency_links to gsd.egg-info/dependency_links.txt writing entry points to gsd.egg-info/entry_points.txt writing requirements to gsd.egg-info/requires.txt writing top-level names to gsd.egg-info/top_level.txt reading manifest file 'gsd.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'gsd.egg-info/SOURCES.txt' running build_ext running install_lib creating /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11 creating /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/fl.pyx -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/pytest_plugin_validate.py -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/pygsd.py -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/conftest.py -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/__main__.py -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/__init__.py -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/version.py -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/fl.cpython-311.so -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/hoomd.py -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/libgsd.pxd -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/gsd.h -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/gsd.c -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd creating /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/test copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/test/test_largefile.py -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/test copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/test/test_fl.py -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/test copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/test/conftest.py -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/test copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/test/test_hoomd.py -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/test copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/test/pytest.ini -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/test copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/test/test_gsd_v1.gsd -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/test copying build/lib.freebsd-14.3-RELEASE-p7-amd64-cpython-311/gsd/fl.c -> /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd byte-compiling /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/pytest_plugin_validate.py to pytest_plugin_validate.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/pygsd.py to pygsd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/conftest.py to conftest.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/__main__.py to __main__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/version.py to version.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/hoomd.py to hoomd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/test/test_largefile.py to test_largefile.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/test/test_fl.py to test_fl.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/test/conftest.py to conftest.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd/test/test_hoomd.py to test_hoomd.cpython-311.pyc writing byte-compilation script '/tmp/tmpq178upz3.py' /usr/local/bin/python3.11 /tmp/tmpq178upz3.py removing /tmp/tmpq178upz3.py running install_egg_info Copying gsd.egg-info to /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/lib/python3.11/site-packages/gsd-3.4.1-py3.11.egg-info running install_scripts Installing gsd script to /wrkdirs/usr/ports/science/py-gsd/work-py311/stage/usr/local/bin writing list of installed files to '/wrkdirs/usr/ports/science/py-gsd/work-py311/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-01-19T15:58:30+0000' 'PKG_NOTE_ports_top_git_hash=076a295eb33c' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=06a08e69f3ac' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py311-gsd-3.4.1_1 ===> Building py311-gsd-3.4.1_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-gsd-3.4.1_1 build of science/py-gsd@py311 | py311-gsd-3.4.1_1 ended at Mon Jan 19 10:59:01 EST 2026 build time: 00:00:34