=>> Building science/py-emmet-core build started at Wed Mar 11 04:31:27 EDT 2026 port directory: /usr/ports/science/py-emmet-core package name: py311-emmet-core-0.64.0_1 building for: FreeBSD pkg.DaveG.ca 14.4-RELEASE FreeBSD 14.4-RELEASE 1404000 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1084 Sep 22 04:12 /usr/ports/science/py-emmet-core/Makefile Ports top last git commit: 26b198eb3ee3 Ports top unclean checkout: no Port dir last git commit: a8e684e90f9d Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1404000 Job Id: 08 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1404000 UNAME_v=FreeBSD 14.4-RELEASE 1404000 UNAME_r=14.4-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/08/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_14_4_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-emmet-core/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-emmet-core/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-emmet-core/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-emmet-core/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-emmet-core/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-emmet-core/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-emmet-core/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-emmet-core/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-emmet-core/work-py311/.cache HOME=/wrkdirs/usr/ports/science/py-emmet-core/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-emmet-core/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-emmet-core/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/emmet-core" EXAMPLESDIR="share/examples/emmet-core" DATADIR="share/emmet-core" WWWDIR="www/emmet-core" ETCDIR="etc/emmet-core" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/emmet-core DOCSDIR=/usr/local/share/doc/emmet-core EXAMPLESDIR=/usr/local/share/examples/emmet-core WWWDIR=/usr/local/www/emmet-core ETCDIR=/usr/local/etc/emmet-core --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-emmet-core-0.64.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.6.2.pkg [pkg.DaveG.ca] Installing pkg-2.6.2... [pkg.DaveG.ca] Extracting pkg-2.6.2: .......... done ===> py311-emmet-core-0.64.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-emmet-core-0.64.0_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-emmet-core-0.64.0_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-emmet-core-0.64.0_1 for building => SHA256 Checksum OK for emmet-core-0.64.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-emmet-core-0.64.0_1 for building ===> Extracting for py311-emmet-core-0.64.0_1 => SHA256 Checksum OK for emmet-core-0.64.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-emmet-core-0.64.0_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-emmet-core-0.64.0_1 depends on package: py311-setuptools_scm7>0 - not found ===> Installing existing package /packages/All/py311-setuptools_scm7-7.1.0.pkg [pkg.DaveG.ca] Installing py311-setuptools_scm7-7.1.0... [pkg.DaveG.ca] `-- Installing py311-packaging-26.0... [pkg.DaveG.ca] | `-- Installing python311-3.11.15... [pkg.DaveG.ca] | | `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | | `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] | | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | | `-- Installing readline-8.3.3... [pkg.DaveG.ca] | | `-- Extracting readline-8.3.3: .......... done [pkg.DaveG.ca] | `-- Extracting python311-3.11.15: .......... done [pkg.DaveG.ca] `-- Extracting py311-packaging-26.0: .......... done [pkg.DaveG.ca] `-- Installing py311-typing-extensions-4.15.0... [pkg.DaveG.ca] `-- Extracting py311-typing-extensions-4.15.0: ....... done [pkg.DaveG.ca] Extracting py311-setuptools_scm7-7.1.0: .......... done ===== Message from python311-3.11.15: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-emmet-core-0.64.0_1 depends on package: py311-setuptools_scm7>0 - found ===> Returning to build of py311-emmet-core-0.64.0_1 ===> py311-emmet-core-0.64.0_1 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [pkg.DaveG.ca] Installing py311-setuptools-63.1.0_3... [pkg.DaveG.ca] Extracting py311-setuptools-63.1.0_3: .......... done ===> py311-emmet-core-0.64.0_1 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-emmet-core-0.64.0_1 ===> py311-emmet-core-0.64.0_1 depends on file: /usr/local/bin/python3.11 - found ===> py311-emmet-core-0.64.0_1 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> py311-emmet-core-0.64.0_1 depends on file: /usr/local/bin/ccache - found ===> Returning to build of py311-emmet-core-0.64.0_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-emmet-core-0.64.0_1 running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-emmet-core-0.64.0_1 running build running build_py creating build creating build/lib creating build/lib/emmet creating build/lib/emmet/core copying emmet/core/material_property.py -> build/lib/emmet/core copying emmet/core/eos.py -> build/lib/emmet/core copying emmet/core/stubs.py -> build/lib/emmet/core copying emmet/core/polar.py -> build/lib/emmet/core copying emmet/core/corrected_entries.py -> build/lib/emmet/core copying emmet/core/symmetry.py -> build/lib/emmet/core copying emmet/core/substrates.py -> build/lib/emmet/core copying emmet/core/_messages.py -> build/lib/emmet/core copying emmet/core/common.py -> build/lib/emmet/core copying emmet/core/__init__.py -> build/lib/emmet/core copying emmet/core/mpcomplete.py -> build/lib/emmet/core copying emmet/core/molecules_jcesr.py -> build/lib/emmet/core copying emmet/core/oxidation_states.py -> build/lib/emmet/core copying emmet/core/surface_properties.py -> build/lib/emmet/core copying emmet/core/base.py -> build/lib/emmet/core copying emmet/core/summary.py -> build/lib/emmet/core copying emmet/core/formula_autocomplete.py -> build/lib/emmet/core copying emmet/core/similarity.py -> build/lib/emmet/core copying emmet/core/math.py -> build/lib/emmet/core copying emmet/core/absorption.py -> build/lib/emmet/core copying emmet/core/provenance.py -> build/lib/emmet/core copying emmet/core/phonon.py -> build/lib/emmet/core copying emmet/core/structure.py -> build/lib/emmet/core copying emmet/core/electronic_structure.py -> build/lib/emmet/core copying emmet/core/dois.py -> build/lib/emmet/core copying emmet/core/settings.py -> build/lib/emmet/core copying emmet/core/structure_group.py -> build/lib/emmet/core copying emmet/core/optimade.py -> build/lib/emmet/core copying emmet/core/grain_boundary.py -> build/lib/emmet/core copying emmet/core/material.py -> build/lib/emmet/core copying emmet/core/spectrum.py -> build/lib/emmet/core copying emmet/core/utils.py -> build/lib/emmet/core copying emmet/core/alloys.py -> build/lib/emmet/core copying emmet/core/chemenv.py -> build/lib/emmet/core copying emmet/core/tasks.py -> build/lib/emmet/core copying emmet/core/robocrys.py -> build/lib/emmet/core copying emmet/core/magnetism.py -> build/lib/emmet/core copying emmet/core/bonds.py -> build/lib/emmet/core copying emmet/core/charge_density.py -> build/lib/emmet/core copying emmet/core/elasticity.py -> build/lib/emmet/core copying emmet/core/electrode.py -> build/lib/emmet/core copying emmet/core/find_structure.py -> build/lib/emmet/core copying emmet/core/xrd.py -> build/lib/emmet/core copying emmet/core/thermo.py -> build/lib/emmet/core copying emmet/core/elasticity_legacy.py -> build/lib/emmet/core copying emmet/core/_user_settings.py -> build/lib/emmet/core copying emmet/core/mpid.py -> build/lib/emmet/core copying emmet/core/fermi.py -> build/lib/emmet/core copying emmet/core/_general_store.py -> build/lib/emmet/core copying emmet/core/task.py -> build/lib/emmet/core copying emmet/core/xas.py -> build/lib/emmet/core creating build/lib/emmet/core/feff copying emmet/core/feff/__init__.py -> build/lib/emmet/core/feff copying emmet/core/feff/task.py -> build/lib/emmet/core/feff creating build/lib/emmet/core/vasp copying emmet/core/vasp/__init__.py -> build/lib/emmet/core/vasp copying emmet/core/vasp/validation.py -> build/lib/emmet/core/vasp copying emmet/core/vasp/calculation.py -> build/lib/emmet/core/vasp copying emmet/core/vasp/material.py -> build/lib/emmet/core/vasp copying emmet/core/vasp/task_valid.py -> build/lib/emmet/core/vasp creating build/lib/emmet/core/qchem copying emmet/core/qchem/molecule.py -> build/lib/emmet/core/qchem copying emmet/core/qchem/__init__.py -> build/lib/emmet/core/qchem copying emmet/core/qchem/task.py -> build/lib/emmet/core/qchem creating build/lib/emmet/core/molecules copying emmet/core/molecules/__init__.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/molecule_property.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/summary.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/redox.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/vibration.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/metal_binding.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/orbitals.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/bonds.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/thermo.py -> build/lib/emmet/core/molecules copying emmet/core/molecules/atomic.py -> build/lib/emmet/core/molecules creating build/lib/emmet/core/synthesis copying emmet/core/synthesis/__init__.py -> build/lib/emmet/core/synthesis copying emmet/core/synthesis/materials.py -> build/lib/emmet/core/synthesis copying emmet/core/synthesis/reaction.py -> build/lib/emmet/core/synthesis copying emmet/core/synthesis/core.py -> build/lib/emmet/core/synthesis copying emmet/core/synthesis/operations.py -> build/lib/emmet/core/synthesis creating build/lib/emmet/core/mobility copying emmet/core/mobility/migrationgraph.py -> build/lib/emmet/core/mobility creating build/lib/emmet/core/vasp/calc_types copying emmet/core/vasp/calc_types/__init__.py -> build/lib/emmet/core/vasp/calc_types copying emmet/core/vasp/calc_types/enums.py -> build/lib/emmet/core/vasp/calc_types copying emmet/core/vasp/calc_types/utils.py -> build/lib/emmet/core/vasp/calc_types copying emmet/core/vasp/calc_types/generate.py -> build/lib/emmet/core/vasp/calc_types creating build/lib/emmet/core/qchem/calc_types copying emmet/core/qchem/calc_types/__init__.py -> build/lib/emmet/core/qchem/calc_types copying emmet/core/qchem/calc_types/utils.py -> build/lib/emmet/core/qchem/calc_types copying emmet/core/qchem/calc_types/generate.py -> build/lib/emmet/core/qchem/calc_types copying emmet/core/qchem/calc_types/calc_types.py -> build/lib/emmet/core/qchem/calc_types running egg_info writing emmet_core.egg-info/PKG-INFO writing dependency_links to emmet_core.egg-info/dependency_links.txt writing requirements to emmet_core.egg-info/requires.txt writing top-level names to emmet_core.egg-info/top_level.txt reading manifest file 'emmet_core.egg-info/SOURCES.txt' writing manifest file 'emmet_core.egg-info/SOURCES.txt' copying emmet/core/vasp/calc_types/run_types.yaml -> build/lib/emmet/core/vasp/calc_types =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-emmet-core-0.64.0_1 depends on package: py311-monty>=2021.3 - not found ===> Installing existing package 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[pkg.DaveG.ca] `-- Installing py311-invoke-2.2.1... [pkg.DaveG.ca] `-- Extracting py311-invoke-2.2.1: .......... done [pkg.DaveG.ca] `-- Installing py311-msgpack-1.1.2... [pkg.DaveG.ca] `-- Extracting py311-msgpack-1.1.2: .......... done [pkg.DaveG.ca] `-- Installing py311-numpy-1.26.4_12,1... [pkg.DaveG.ca] | `-- Installing gcc14-14.2.0_4... [pkg.DaveG.ca] | | `-- Installing binutils-2.44,1... [pkg.DaveG.ca] | | `-- Installing zstd-1.5.7_1... [pkg.DaveG.ca] | | `-- Extracting zstd-1.5.7_1: .......... done [pkg.DaveG.ca] | | `-- Extracting binutils-2.44,1: .......... done [pkg.DaveG.ca] | | `-- Installing gmp-6.3.0... [pkg.DaveG.ca] | | `-- Extracting gmp-6.3.0: .......... done [pkg.DaveG.ca] | | `-- Installing mpc-1.3.1_1... [pkg.DaveG.ca] | | `-- Installing mpfr-4.2.2,1... 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[pkg.DaveG.ca] | | `-- Extracting suitesparse-camd-3.3.5: .......... done [pkg.DaveG.ca] | | `-- Installing suitesparse-ccolamd-3.3.5... [pkg.DaveG.ca] | | `-- Extracting suitesparse-ccolamd-3.3.5: .......... done [pkg.DaveG.ca] | | `-- Installing suitesparse-cholmod-5.3.4... [pkg.DaveG.ca] | | `-- Installing suitesparse-colamd-3.3.5... [pkg.DaveG.ca] | | `-- Extracting suitesparse-colamd-3.3.5: .......... done [pkg.DaveG.ca] | | `-- Extracting suitesparse-cholmod-5.3.4: .......... done [pkg.DaveG.ca] | `-- Extracting suitesparse-umfpack-6.3.7: .......... done [pkg.DaveG.ca] `-- Extracting py311-numpy-1.26.4_12,1: .......... done [pkg.DaveG.ca] `-- Installing py311-orjson-3.11.4_2... [pkg.DaveG.ca] `-- Extracting py311-orjson-3.11.4_2: .......... done [pkg.DaveG.ca] `-- Installing py311-pandas-2.3.3,1... [pkg.DaveG.ca] | `-- Installing py311-bottleneck-1.6.0... [pkg.DaveG.ca] | `-- Extracting py311-bottleneck-1.6.0: .......... done [pkg.DaveG.ca] | `-- Installing py311-numexpr-2.14.1... [pkg.DaveG.ca] | `-- Extracting py311-numexpr-2.14.1: .......... done [pkg.DaveG.ca] | `-- Installing py311-python-dateutil-2.9.0... [pkg.DaveG.ca] | | `-- Installing py311-six-1.17.0... [pkg.DaveG.ca] | | `-- Extracting py311-six-1.17.0: ........ done [pkg.DaveG.ca] | `-- Extracting py311-python-dateutil-2.9.0: .......... done [pkg.DaveG.ca] | `-- Installing py311-pytz-2025.2_1,1... [pkg.DaveG.ca] | `-- Extracting py311-pytz-2025.2_1,1: .......... done [pkg.DaveG.ca] | `-- Installing py311-sqlite3-3.11.15_10... [pkg.DaveG.ca] | | `-- Installing sqlite3-3.50.4_2,1... [pkg.DaveG.ca] | | `-- Installing libedit-3.1.20251016_1,1... [pkg.DaveG.ca] | | `-- Extracting libedit-3.1.20251016_1,1: .......... done [pkg.DaveG.ca] | | `-- Extracting sqlite3-3.50.4_2,1: .......... done [pkg.DaveG.ca] | `-- Extracting py311-sqlite3-3.11.15_10: ...... done [pkg.DaveG.ca] | `-- Installing py311-tzdata-2025.3... [pkg.DaveG.ca] | `-- Extracting py311-tzdata-2025.3: .......... done [pkg.DaveG.ca] `-- Extracting py311-pandas-2.3.3,1: .......... done [pkg.DaveG.ca] `-- Installing py311-pydantic2-2.12.5... [pkg.DaveG.ca] | `-- Installing py311-annotated-types-0.7.0... [pkg.DaveG.ca] | `-- Extracting py311-annotated-types-0.7.0: .......... done [pkg.DaveG.ca] | `-- Installing py311-pydantic-core-2.41.5_3... [pkg.DaveG.ca] | `-- Extracting py311-pydantic-core-2.41.5_3: .......... done [pkg.DaveG.ca] | `-- Installing py311-typing-inspection-0.4.2... [pkg.DaveG.ca] | `-- Extracting py311-typing-inspection-0.4.2: .......... done [pkg.DaveG.ca] `-- Extracting py311-pydantic2-2.12.5: .......... done [pkg.DaveG.ca] `-- Installing py311-requests-2.32.5... [pkg.DaveG.ca] | `-- Installing py311-certifi-2026.1.4... [pkg.DaveG.ca] | `-- Extracting py311-certifi-2026.1.4: .......... done [pkg.DaveG.ca] | `-- Installing py311-charset-normalizer-3.4.4... [pkg.DaveG.ca] | `-- Extracting py311-charset-normalizer-3.4.4: .......... done [pkg.DaveG.ca] | `-- Installing py311-idna-3.11... [pkg.DaveG.ca] | `-- Extracting py311-idna-3.11: .......... done [pkg.DaveG.ca] | `-- Installing py311-pysocks-1.7.1_1... [pkg.DaveG.ca] | `-- Extracting py311-pysocks-1.7.1_1: .......... done [pkg.DaveG.ca] | `-- Installing py311-urllib3-2.6.3,1... [pkg.DaveG.ca] | `-- Extracting py311-urllib3-2.6.3,1: .......... done [pkg.DaveG.ca] `-- Extracting py311-requests-2.32.5: .......... done [pkg.DaveG.ca] `-- Installing py311-ruamel.yaml-0.19.1... [pkg.DaveG.ca] | `-- Installing py311-ruamel.yaml.clib-0.2.15... [pkg.DaveG.ca] | `-- Extracting py311-ruamel.yaml.clib-0.2.15: ...... done [pkg.DaveG.ca] `-- Extracting py311-ruamel.yaml-0.19.1: .......... done [pkg.DaveG.ca] `-- Installing py311-tqdm-4.67.2... [pkg.DaveG.ca] `-- Extracting py311-tqdm-4.67.2: .......... done [pkg.DaveG.ca] Extracting py311-monty-2026.2.18: .......... done ===== Message from gcc14-14.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from py311-pandas-2.3.3,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. ===== Message from py311-urllib3-2.6.3,1: -- Since version 1.25 HTTPS connections are now verified by default which is done via "cert_reqs = 'CERT_REQUIRED'". While certificate verification can be disabled via "cert_reqs = 'CERT_NONE'", it's highly recommended to leave it on. Various consumers of net/py-urllib3 already have implemented routines that either explicitly enable or disable HTTPS certificate verification (e.g. via configuration settings, CLI arguments, etc.). Yet it may happen that there are still some consumers which don't explicitly enable/disable certificate verification for HTTPS connections which could then lead to errors (as is often the case with self-signed certificates). In case of an error one should try first to temporarily disable certificate verification of the problematic urllib3 consumer to see if that approach will remedy the issue. ===> py311-emmet-core-0.64.0_1 depends on package: py311-monty>=2021.3 - found ===> Returning to build of py311-emmet-core-0.64.0_1 ===> py311-emmet-core-0.64.0_1 depends on package: py311-pybtex>=0.24 - not found ===> Installing existing package /packages/All/py311-pybtex-0.25.1.pkg [pkg.DaveG.ca] Installing py311-pybtex-0.25.1... [pkg.DaveG.ca] `-- Installing py311-latexcodec-3.0.1... [pkg.DaveG.ca] `-- Extracting py311-latexcodec-3.0.1: .......... done [pkg.DaveG.ca] `-- Installing py311-pyyaml-6.0.3... [pkg.DaveG.ca] | `-- Installing libyaml-0.2.5... [pkg.DaveG.ca] | `-- Extracting libyaml-0.2.5: ...... done [pkg.DaveG.ca] `-- Extracting py311-pyyaml-6.0.3: .......... done [pkg.DaveG.ca] Extracting py311-pybtex-0.25.1: .......... done ===> py311-emmet-core-0.64.0_1 depends on package: py311-pybtex>=0.24 - found ===> Returning to build of py311-emmet-core-0.64.0_1 ===> py311-emmet-core-0.64.0_1 depends on package: py311-pydantic2>=1.10.2 - found ===> py311-emmet-core-0.64.0_1 depends on package: py311-spglib>=2.0.1 - not found ===> Installing existing package /packages/All/py311-spglib-2.7.0.pkg [pkg.DaveG.ca] Installing py311-spglib-2.7.0... [pkg.DaveG.ca] `-- Installing spglib-2.7.0... [pkg.DaveG.ca] `-- Extracting spglib-2.7.0: .......... done [pkg.DaveG.ca] Extracting py311-spglib-2.7.0: .......... done ===> py311-emmet-core-0.64.0_1 depends on package: py311-spglib>=2.0.1 - found ===> Returning to build of py311-emmet-core-0.64.0_1 ===> py311-emmet-core-0.64.0_1 depends on package: py311-typing-extensions>=3.7<5.0 - found ===> py311-emmet-core-0.64.0_1 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py311-emmet-core-0.64.0_1 ===> Generating temporary packing list running install /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing emmet_core.egg-info/PKG-INFO writing dependency_links to emmet_core.egg-info/dependency_links.txt writing requirements to emmet_core.egg-info/requires.txt writing top-level names to emmet_core.egg-info/top_level.txt reading manifest file 'emmet_core.egg-info/SOURCES.txt' writing manifest file 'emmet_core.egg-info/SOURCES.txt' running install_lib creating /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11 creating /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet creating /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/material_property.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/eos.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/stubs.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/polar.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/corrected_entries.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/symmetry.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/substrates.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/_messages.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/common.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/__init__.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/mpcomplete.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/molecules_jcesr.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/oxidation_states.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/surface_properties.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core creating /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/feff copying build/lib/emmet/core/feff/__init__.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/feff copying build/lib/emmet/core/feff/task.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/feff copying build/lib/emmet/core/base.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/summary.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/formula_autocomplete.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/similarity.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/math.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/absorption.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/provenance.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core creating /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp copying build/lib/emmet/core/vasp/__init__.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp copying build/lib/emmet/core/vasp/validation.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp copying build/lib/emmet/core/vasp/calculation.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp creating /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp/calc_types copying build/lib/emmet/core/vasp/calc_types/__init__.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp/calc_types copying build/lib/emmet/core/vasp/calc_types/enums.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp/calc_types copying build/lib/emmet/core/vasp/calc_types/utils.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp/calc_types copying build/lib/emmet/core/vasp/calc_types/run_types.yaml -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp/calc_types copying build/lib/emmet/core/vasp/calc_types/generate.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp/calc_types copying build/lib/emmet/core/vasp/material.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp copying build/lib/emmet/core/vasp/task_valid.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp copying build/lib/emmet/core/phonon.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/structure.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/electronic_structure.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core creating /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/qchem copying build/lib/emmet/core/qchem/molecule.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/qchem copying build/lib/emmet/core/qchem/__init__.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/qchem creating /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/qchem/calc_types copying build/lib/emmet/core/qchem/calc_types/__init__.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/qchem/calc_types copying build/lib/emmet/core/qchem/calc_types/utils.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/qchem/calc_types copying build/lib/emmet/core/qchem/calc_types/generate.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/qchem/calc_types copying build/lib/emmet/core/qchem/calc_types/calc_types.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/qchem/calc_types copying build/lib/emmet/core/qchem/task.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/qchem copying build/lib/emmet/core/dois.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/settings.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/structure_group.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/optimade.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/grain_boundary.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/material.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/spectrum.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/utils.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/alloys.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/chemenv.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/tasks.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core creating /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules copying build/lib/emmet/core/molecules/__init__.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules copying build/lib/emmet/core/molecules/molecule_property.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules copying build/lib/emmet/core/molecules/summary.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules copying build/lib/emmet/core/molecules/redox.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules copying build/lib/emmet/core/molecules/vibration.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules copying build/lib/emmet/core/molecules/metal_binding.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules copying build/lib/emmet/core/molecules/orbitals.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules copying build/lib/emmet/core/molecules/bonds.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules copying build/lib/emmet/core/molecules/thermo.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules copying build/lib/emmet/core/molecules/atomic.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules copying build/lib/emmet/core/robocrys.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/magnetism.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/bonds.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core creating /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/synthesis copying build/lib/emmet/core/synthesis/__init__.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/synthesis copying build/lib/emmet/core/synthesis/materials.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/synthesis copying build/lib/emmet/core/synthesis/reaction.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/synthesis copying build/lib/emmet/core/synthesis/core.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/synthesis copying build/lib/emmet/core/synthesis/operations.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/synthesis copying build/lib/emmet/core/charge_density.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/elasticity.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/electrode.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/find_structure.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/xrd.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core creating /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/mobility copying build/lib/emmet/core/mobility/migrationgraph.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/mobility copying build/lib/emmet/core/thermo.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/elasticity_legacy.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/_user_settings.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/mpid.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/fermi.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/_general_store.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/task.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core copying build/lib/emmet/core/xas.py -> /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/material_property.py to material_property.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/eos.py to eos.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/stubs.py to stubs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/polar.py to polar.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/corrected_entries.py to corrected_entries.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/symmetry.py to symmetry.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/substrates.py to substrates.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/_messages.py to _messages.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/common.py to common.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/mpcomplete.py to mpcomplete.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules_jcesr.py to molecules_jcesr.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/oxidation_states.py to oxidation_states.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/surface_properties.py to surface_properties.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/feff/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/feff/task.py to task.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/base.py to base.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/summary.py to summary.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/formula_autocomplete.py to formula_autocomplete.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/similarity.py to similarity.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/math.py to math.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/absorption.py to absorption.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/provenance.py to provenance.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp/validation.py to validation.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp/calculation.py to calculation.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp/calc_types/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp/calc_types/enums.py to enums.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp/calc_types/utils.py to utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp/calc_types/generate.py to generate.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp/material.py to material.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/vasp/task_valid.py to task_valid.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/phonon.py to phonon.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/structure.py to structure.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/electronic_structure.py to electronic_structure.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/qchem/molecule.py to molecule.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/qchem/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/qchem/calc_types/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/qchem/calc_types/utils.py to utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/qchem/calc_types/generate.py to generate.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/qchem/calc_types/calc_types.py to calc_types.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/qchem/task.py to task.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/dois.py to dois.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/settings.py to settings.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/structure_group.py to structure_group.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/optimade.py to optimade.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/grain_boundary.py to grain_boundary.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/material.py to material.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/spectrum.py to spectrum.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/utils.py to utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/alloys.py to alloys.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/chemenv.py to chemenv.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/tasks.py to tasks.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules/molecule_property.py to molecule_property.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules/summary.py to summary.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules/redox.py to redox.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules/vibration.py to vibration.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules/metal_binding.py to metal_binding.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules/orbitals.py to orbitals.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules/bonds.py to bonds.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules/thermo.py to thermo.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/molecules/atomic.py to atomic.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/robocrys.py to robocrys.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/magnetism.py to magnetism.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/bonds.py to bonds.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/synthesis/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/synthesis/materials.py to materials.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/synthesis/reaction.py to reaction.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/synthesis/core.py to core.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/synthesis/operations.py to operations.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/charge_density.py to charge_density.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/elasticity.py to elasticity.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/electrode.py to electrode.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/find_structure.py to find_structure.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/xrd.py to xrd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/mobility/migrationgraph.py to migrationgraph.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/thermo.py to thermo.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/elasticity_legacy.py to elasticity_legacy.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/_user_settings.py to _user_settings.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/mpid.py to mpid.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/fermi.py to fermi.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/_general_store.py to _general_store.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/task.py to task.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet/core/xas.py to xas.cpython-311.pyc writing byte-compilation script '/tmp/tmp5wo7r34x.py' /usr/local/bin/python3.11 /tmp/tmp5wo7r34x.py removing /tmp/tmp5wo7r34x.py running install_egg_info Copying emmet_core.egg-info to /wrkdirs/usr/ports/science/py-emmet-core/work-py311/stage/usr/local/lib/python3.11/site-packages/emmet_core-0.64.0-py3.11.egg-info running install_scripts writing list of installed files to '/wrkdirs/usr/ports/science/py-emmet-core/work-py311/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-03-11T08:31:27+0000' 'PKG_NOTE_ports_top_git_hash=26b198eb3ee3' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=a8e684e90f9d' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py311-emmet-core-0.64.0_1 ===> Building py311-emmet-core-0.64.0_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-emmet-core-0.64.0_1 build of science/py-emmet-core@py311 | py311-emmet-core-0.64.0_1 ended at Wed Mar 11 04:32:54 EDT 2026 build time: 00:01:28