=>> Building biology/py-biopython build started at Fri Jan 23 10:07:36 EST 2026 port directory: /usr/ports/biology/py-biopython package name: py311-biopython-1.85_2 building for: FreeBSD pkg.DaveG.ca 13.5-RELEASE-p7 FreeBSD 13.5-RELEASE-p7 1305000 amd64 maintained by: mauricio@arareko.net Makefile datestamp: -rw-r--r-- 1 root wheel 796 Sep 22 04:12 /usr/ports/biology/py-biopython/Makefile Ports top last git commit: 076a295eb33c Ports top unclean checkout: no Port dir last git commit: b304d8ab18ac Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1305000 Job Id: 11 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1305000 UNAME_v=FreeBSD 13.5-RELEASE-p7 1305000 UNAME_r=13.5-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/11/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_13_5_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py311 MAKE_ARGS= FLAVOR=py311 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for py311-biopython-1.85_2: REPORTLAB=on: PDF support in Bio.Graphics module ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- mauricio@arareko.net --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-biopython/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-biopython/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-biopython/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-biopython/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work-py311 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work-py311 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-biopython/work-py311/.cache HOME=/wrkdirs/usr/ports/biology/py-biopython/work-py311 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-biopython/work-py311/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-biopython/work-py311/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=13.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/biopython" EXAMPLESDIR="share/examples/biopython" DATADIR="share/biopython" WWWDIR="www/biopython" ETCDIR="etc/biopython" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/biopython DOCSDIR=/usr/local/share/doc/biopython EXAMPLESDIR=/usr/local/share/examples/biopython WWWDIR=/usr/local/www/biopython ETCDIR=/usr/local/etc/biopython --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-biopython-1.85_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.5.1.pkg [pkg.DaveG.ca] Installing pkg-2.5.1... [pkg.DaveG.ca] Extracting pkg-2.5.1: .......... done ===> py311-biopython-1.85_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py311-biopython-1.85_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-biopython-1.85_2 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-biopython-1.85_2 for building => SHA256 Checksum OK for biopython-1.85.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by py311-biopython-1.85_2 for building ===> Extracting for py311-biopython-1.85_2 => SHA256 Checksum OK for biopython-1.85.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py311-biopython-1.85_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-biopython-1.85_2 depends on package: py311-numpy>=1.16,1<1.27,1 - not found ===> Installing existing package /packages/All/py311-numpy-1.26.4_12,1.pkg [pkg.DaveG.ca] Installing py311-numpy-1.26.4_12,1... [pkg.DaveG.ca] `-- Installing gcc14-14.2.0_4... [pkg.DaveG.ca] | `-- Installing binutils-2.44,1... [pkg.DaveG.ca] | | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | | `-- Installing zstd-1.5.7_1... [pkg.DaveG.ca] | | `-- Extracting zstd-1.5.7_1: .......... done [pkg.DaveG.ca] | `-- Extracting binutils-2.44,1: .......... done [pkg.DaveG.ca] | `-- Installing gmp-6.3.0... [pkg.DaveG.ca] | `-- Extracting gmp-6.3.0: .......... done [pkg.DaveG.ca] | `-- Installing mpc-1.3.1_1... [pkg.DaveG.ca] | | `-- Installing mpfr-4.2.2,1... [pkg.DaveG.ca] | | `-- Extracting mpfr-4.2.2,1: .......... done [pkg.DaveG.ca] | `-- Extracting mpc-1.3.1_1: ...... done [pkg.DaveG.ca] `-- Extracting gcc14-14.2.0_4: .......... done [pkg.DaveG.ca] `-- Installing openblas-0.3.30,2... [pkg.DaveG.ca] `-- Extracting openblas-0.3.30,2: .......... done [pkg.DaveG.ca] `-- Installing python311-3.11.14... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | `-- Installing readline-8.3.3... [pkg.DaveG.ca] | `-- Extracting readline-8.3.3: .......... done [pkg.DaveG.ca] `-- Extracting python311-3.11.14: .......... done [pkg.DaveG.ca] `-- Installing suitesparse-umfpack-6.3.7... [pkg.DaveG.ca] | `-- Installing suitesparse-amd-3.3.4... [pkg.DaveG.ca] | | `-- Installing suitesparse-config-7.12.1... [pkg.DaveG.ca] | | `-- Extracting suitesparse-config-7.12.1: .......... done [pkg.DaveG.ca] | `-- Extracting suitesparse-amd-3.3.4: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-camd-3.3.5... [pkg.DaveG.ca] | `-- Extracting suitesparse-camd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-ccolamd-3.3.5... [pkg.DaveG.ca] | `-- Extracting suitesparse-ccolamd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-cholmod-5.3.4... [pkg.DaveG.ca] | | `-- Installing suitesparse-colamd-3.3.5... [pkg.DaveG.ca] | | `-- Extracting suitesparse-colamd-3.3.5: .......... done [pkg.DaveG.ca] | `-- Extracting suitesparse-cholmod-5.3.4: .......... done [pkg.DaveG.ca] `-- Extracting suitesparse-umfpack-6.3.7: .......... done [pkg.DaveG.ca] Extracting py311-numpy-1.26.4_12,1: .......... done ===== Message from gcc14-14.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python311-3.11.14: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> py311-biopython-1.85_2 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> Returning to build of py311-biopython-1.85_2 ===> py311-biopython-1.85_2 depends on package: py311-setuptools>=63.1.0 - not found ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [pkg.DaveG.ca] Installing py311-setuptools-63.1.0_3... [pkg.DaveG.ca] Extracting py311-setuptools-63.1.0_3: .......... done ===> py311-biopython-1.85_2 depends on package: py311-setuptools>=63.1.0 - found ===> Returning to build of py311-biopython-1.85_2 ===> py311-biopython-1.85_2 depends on file: /usr/local/bin/python3.11 - found ===> py311-biopython-1.85_2 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc14 create symlink for gcc14 (world) create symlink for g++14 create symlink for g++14 (world) create symlink for cpp14 create symlink for cpp14 (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> py311-biopython-1.85_2 depends on file: /usr/local/bin/ccache - found ===> Returning to build of py311-biopython-1.85_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py311-biopython-1.85_2 running config =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for py311-biopython-1.85_2 running build running build_py creating build creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311 creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio copying Bio/SeqFeature.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio copying Bio/MarkovModel.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio copying Bio/_utils.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio copying Bio/pairwise2.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio copying Bio/File.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio copying Bio/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio copying Bio/SeqRecord.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio copying Bio/NaiveBayes.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio copying Bio/MaxEntropy.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio copying Bio/LogisticRegression.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio copying Bio/kNN.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio copying Bio/Seq.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio copying Bio/bgzf.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Affy copying Bio/Affy/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Affy copying Bio/Affy/CelFile.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Affy creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/emboss.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/mauve.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/analysis.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/bigpsl.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/bigmaf.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/chain.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/psl.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/msf.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/tabular.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/phylip.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/maf.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/sam.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/exonerate.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/AlignInfo.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/bed.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/interfaces.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/clustal.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/fasta.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/a2m.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/stockholm.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/hhr.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/bigbed.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/nexus.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO copying Bio/AlignIO/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Alphabet copying Bio/Alphabet/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Alphabet creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Application copying Bio/Application/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Application creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Blast copying Bio/Blast/NCBIWWW.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Blast copying Bio/Blast/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Blast copying Bio/Blast/_parser.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Blast copying Bio/Blast/_writers.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Blast copying Bio/Blast/NCBIXML.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Blast copying Bio/Blast/Applications.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Blast creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/CAPS copying Bio/CAPS/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/CAPS creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Cluster copying Bio/Cluster/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Cluster creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/codonalign copying Bio/codonalign/codonalignment.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/codonalign copying Bio/codonalign/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/codonalign copying Bio/codonalign/codonseq.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/codonalign creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Compass copying Bio/Compass/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Compass creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Data copying Bio/Data/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Data copying Bio/Data/CodonTable.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Data copying Bio/Data/PDBData.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Data copying Bio/Data/IUPACData.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Data creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Emboss copying Bio/Emboss/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Emboss copying Bio/Emboss/Primer3.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Emboss copying Bio/Emboss/Applications.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Emboss creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez copying Bio/Entrez/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez copying Bio/Entrez/Parser.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/ExPASy copying Bio/ExPASy/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/ExPASy creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/GenBank copying Bio/GenBank/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/GenBank copying Bio/GenBank/Record.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/GenBank copying Bio/GenBank/utils.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/GenBank copying Bio/GenBank/Scanner.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/GenBank creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Geo copying Bio/Geo/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Geo copying Bio/Geo/Record.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Geo creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics copying Bio/Graphics/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics copying Bio/Graphics/Comparative.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics copying Bio/Graphics/Distribution.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/HMM copying Bio/HMM/MarkovModel.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/HMM copying Bio/HMM/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/HMM copying Bio/HMM/Utilities.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/HMM copying Bio/HMM/Trainer.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/HMM creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG copying Bio/KEGG/REST.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG copying Bio/KEGG/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/Compound creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/Enzyme creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/Gene creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/Map creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/mmtf creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/KGML creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Medline copying Bio/Medline/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Medline creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs copying Bio/motifs/clusterbuster.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs copying Bio/motifs/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs copying Bio/motifs/thresholds.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs copying Bio/motifs/transfac.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs copying Bio/motifs/alignace.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs copying Bio/motifs/matrix.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs copying Bio/motifs/minimal.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs copying Bio/motifs/pfm.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs copying Bio/motifs/meme.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs copying Bio/motifs/xms.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs copying Bio/motifs/mast.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/applications creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/jaspar creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus copying Bio/Nexus/Trees.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus copying Bio/Nexus/Nodes.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus copying Bio/Nexus/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus copying Bio/Nexus/StandardData.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus copying Bio/Nexus/Nexus.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/NMR copying Bio/NMR/NOEtools.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/NMR copying Bio/NMR/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/NMR copying Bio/NMR/xpktools.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/NMR creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Pathway copying Bio/Pathway/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Pathway creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Pathway/Rep copying Bio/PDB/mmcifio.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/HSExposure.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/Structure.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/alphafold_db.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/FragmentMapper.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/ic_data.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/vectors.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/Residue.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/SASA.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/StructureBuilder.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/ResidueDepth.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/DSSP.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/Polypeptide.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/Selection.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/Dice.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/MMCIFParser.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/PDBExceptions.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/StructureAlignment.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/PSEA.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/internal_coords.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/Chain.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/Entity.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/cealign.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/PICIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/PDBMLParser.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/PDBParser.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/SCADIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/Atom.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/NACCESS.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/ic_rebuild.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/qcprot.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/Superimposer.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/Model.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/NeighborSearch.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/binary_cif.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/PDBIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/PDBList.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/phenotype copying Bio/phenotype/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/phenotype copying Bio/phenotype/phen_micro.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/phenotype creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PopGen copying Bio/PopGen/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PopGen creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PopGen/GenePop creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Restriction copying Bio/Restriction/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Restriction copying Bio/Restriction/Restriction.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Restriction creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SCOP copying Bio/SCOP/Hie.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SCOP copying Bio/SCOP/Cla.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SCOP copying Bio/SCOP/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SCOP copying Bio/SCOP/Raf.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SCOP copying Bio/SCOP/Dom.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SCOP copying Bio/SCOP/Residues.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SCOP copying Bio/SCOP/Des.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SCOP creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO copying Bio/SearchIO/_utils.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO copying Bio/SearchIO/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO copying Bio/SearchIO/_index.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/_model creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/BlastIO creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HHsuiteIO creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HmmerIO creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/ExonerateIO creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/InterproscanIO creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/GfaIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/_index.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqUtils creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Sequencing copying Bio/Sequencing/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Sequencing copying Bio/Sequencing/Ace.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Sequencing copying Bio/Sequencing/Phd.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Sequencing creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Sequencing/Applications creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SVDSuperimposer creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SwissProt copying Bio/SwissProt/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SwissProt creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/TogoWS copying Bio/TogoWS/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/TogoWS creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo copying Bio/Phylo/BaseTree.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo copying Bio/Phylo/_utils.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo copying Bio/Phylo/CDAO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo copying Bio/Phylo/NexusIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo copying Bio/Phylo/Consensus.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo copying Bio/Phylo/NeXML.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo copying Bio/Phylo/_io.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo copying Bio/Phylo/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo copying Bio/Phylo/NewickIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo copying Bio/Phylo/Newick.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/Applications creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/UniGene copying Bio/UniGene/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/UniGene creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/UniProt copying Bio/UniProt/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/UniProt copying Bio/UniProt/GOA.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/UniProt creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/BioSQL copying BioSQL/BioSeq.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/BioSQL copying BioSQL/BioSeqDatabase.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/BioSQL copying BioSQL/__init__.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/BioSQL copying BioSQL/Loader.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/BioSQL copying BioSQL/DBUtils.py -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/BioSQL running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'Bio.Align.substitution_matrices.data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'Bio.Align.substitution_matrices.data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'Bio.Align.substitution_matrices.data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'Bio.Entrez.DTDs' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'Bio.Entrez.DTDs' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'Bio.Entrez.DTDs' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'Bio.Entrez.XSDs' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'Bio.Entrez.XSDs' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'Bio.Entrez.XSDs' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) copying Bio/cpairwise2module.c -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio copying Bio/py.typed -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio copying Bio/Align/_aligncore.c -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/_codonaligner.c -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align copying Bio/Align/_pairwisealigner.c -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTN -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTP -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MEGABLAST -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Cluster copying Bio/Cluster/cluster.h -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Cluster copying Bio/Cluster/clustermodule.c -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Cluster creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-display1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-format1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-link1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-list1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-math1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-para1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-references1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-section1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/epost.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary_clinvar.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary_gene.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-table-1.mod -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs creating build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs copying Bio/Nexus/cnexus.c -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus copying Bio/PDB/bcifhelpermodule.c -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/ccealignmodule.c -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/PDB/kdtrees.c -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO copying BioSQL/py.typed -> build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/BioSQL running build_ext building 'Bio.Align._codonaligner' extension creating build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311 creating build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio creating build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c Bio/Align/_codonaligner.c -o build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/_codonaligner.o cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/_codonaligner.o -L/usr/local/lib -o build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/_codonaligner.cpython-311.so building 'Bio.Align._pairwisealigner' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c Bio/Align/_pairwisealigner.c -o build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/_pairwisealigner.o cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/_pairwisealigner.o -L/usr/local/lib -o build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/_pairwisealigner.cpython-311.so building 'Bio.Align._aligncore' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c Bio/Align/_aligncore.c -o build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/_aligncore.o cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/_aligncore.o -L/usr/local/lib -o build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/_aligncore.cpython-311.so building 'Bio.cpairwise2' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c Bio/cpairwise2module.c -o build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/cpairwise2module.o cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/cpairwise2module.o -L/usr/local/lib -o build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/cpairwise2.cpython-311.so building 'Bio.Nexus.cnexus' extension creating build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c Bio/Nexus/cnexus.c -o build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus/cnexus.o cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus/cnexus.o -L/usr/local/lib -o build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus/cnexus.cpython-311.so building 'Bio.motifs._pwm' extension creating build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c Bio/motifs/_pwm.c -o build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/_pwm.o cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/_pwm.o -L/usr/local/lib -o build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/_pwm.cpython-311.so building 'Bio.Cluster._cluster' extension creating build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Cluster cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c Bio/Cluster/cluster.c -o build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Cluster/cluster.o -DCLUSTER_USE_PYTHON_MEMORY cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c Bio/Cluster/clustermodule.c -o build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Cluster/clustermodule.o -DCLUSTER_USE_PYTHON_MEMORY cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Cluster/cluster.o build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Cluster/clustermodule.o -L/usr/local/lib -o build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Cluster/_cluster.cpython-311.so building 'Bio.PDB.ccealign' extension creating build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c Bio/PDB/ccealignmodule.c -o build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/ccealignmodule.o cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/ccealignmodule.o -L/usr/local/lib -o build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/ccealign.cpython-311.so building 'Bio.PDB.kdtrees' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c Bio/PDB/kdtrees.c -o build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/kdtrees.o cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/kdtrees.o -L/usr/local/lib -o build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/kdtrees.cpython-311.so building 'Bio.PDB._bcif_helper' extension cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c Bio/PDB/bcifhelpermodule.c -o build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/bcifhelpermodule.o cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/bcifhelpermodule.o -L/usr/local/lib -o build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/_bcif_helper.cpython-311.so building 'Bio.SeqIO._twoBitIO' extension creating build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO cc -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -I/usr/local/include/python3.11 -c Bio/SeqIO/_twoBitIO.c -o build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/_twoBitIO.o cc -shared -O2 -pipe -fstack-protector-strong -fno-strict-aliasing build/temp.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/_twoBitIO.o -L/usr/local/lib -o build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/_twoBitIO.cpython-311.so =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py311-biopython-1.85_2 depends on package: py311-numpy>=1.16,1<1.27,1 - found ===> py311-biopython-1.85_2 depends on package: py311-reportlab>0 - not found ===> Installing existing package /packages/All/py311-reportlab-4.4.3_1.pkg [pkg.DaveG.ca] Installing py311-reportlab-4.4.3_1... [pkg.DaveG.ca] `-- Installing adobe-cmaps-20051217_4... [pkg.DaveG.ca] | `-- Installing fontconfig-2.17.1,1... [pkg.DaveG.ca] | | `-- Installing expat-2.7.3... [pkg.DaveG.ca] | | `-- Extracting expat-2.7.3: .......... done [pkg.DaveG.ca] | | `-- Installing freetype2-2.14.1... [pkg.DaveG.ca] | | `-- Installing brotli-1.2.0,1... [pkg.DaveG.ca] | | `-- Extracting brotli-1.2.0,1: .......... done [pkg.DaveG.ca] | | `-- Installing png-1.6.53... [pkg.DaveG.ca] | | `-- Extracting png-1.6.53: .......... done [pkg.DaveG.ca] | | `-- Extracting freetype2-2.14.1: .......... done [pkg.DaveG.ca] | `-- Extracting fontconfig-2.17.1,1: .......... done [pkg.DaveG.ca] | `-- Installing mkfontscale-1.2.3... [pkg.DaveG.ca] | | `-- Installing libfontenc-1.1.8... [pkg.DaveG.ca] | | `-- Extracting libfontenc-1.1.8: ...... done [pkg.DaveG.ca] | `-- Extracting mkfontscale-1.2.3: .... done [pkg.DaveG.ca] `-- Extracting adobe-cmaps-20051217_4: .......... done [pkg.DaveG.ca] `-- Installing py311-pillow-11.3.0_1... [pkg.DaveG.ca] | `-- Installing jpeg-turbo-3.1.3... [pkg.DaveG.ca] | `-- Extracting jpeg-turbo-3.1.3: .......... done [pkg.DaveG.ca] | `-- Installing lcms2-2.17... [pkg.DaveG.ca] | | `-- Installing tiff-4.7.1... [pkg.DaveG.ca] | | `-- Installing jbigkit-2.1_3... [pkg.DaveG.ca] | | `-- Extracting jbigkit-2.1_3: .......... done [pkg.DaveG.ca] | | `-- Installing lerc-4.0.0... [pkg.DaveG.ca] | | `-- Extracting lerc-4.0.0: ..... done [pkg.DaveG.ca] | | `-- Installing libdeflate-1.25... [pkg.DaveG.ca] | | `-- Extracting libdeflate-1.25: .......... done [pkg.DaveG.ca] | | `-- Extracting tiff-4.7.1: .......... done [pkg.DaveG.ca] | `-- Extracting lcms2-2.17: .......... done [pkg.DaveG.ca] | `-- Installing libavif-1.3.0_2... [pkg.DaveG.ca] | | `-- Installing aom-3.13.1... [pkg.DaveG.ca] | | `-- Installing vmaf-3.0.0... [pkg.DaveG.ca] | | `-- Extracting vmaf-3.0.0: .......... done [pkg.DaveG.ca] | | `-- Extracting aom-3.13.1: .......... done [pkg.DaveG.ca] | | `-- Installing dav1d-1.5.2... [pkg.DaveG.ca] | | `-- Extracting dav1d-1.5.2: .......... done [pkg.DaveG.ca] | | `-- Installing gdk-pixbuf2-2.44.1... [pkg.DaveG.ca] | | `-- Installing glib-2.84.4,2... [pkg.DaveG.ca] | | | `-- Installing libiconv-1.18_1... [pkg.DaveG.ca] | | | `-- Extracting libiconv-1.18_1: .......... done [pkg.DaveG.ca] | | | `-- Installing libinotify-20240724_3... [pkg.DaveG.ca] | | | `-- Extracting libinotify-20240724_3: .......... done [pkg.DaveG.ca] | | | `-- Installing pcre2-10.47_1... [pkg.DaveG.ca] | | | `-- Extracting pcre2-10.47_1: .......... done [pkg.DaveG.ca] | | | `-- Installing py311-packaging-25.0... [pkg.DaveG.ca] | | | `-- Extracting py311-packaging-25.0: .......... done [pkg.DaveG.ca] | | `-- Extracting glib-2.84.4,2: .......... done [pkg.DaveG.ca] | | `-- Installing libxml2-2.14.6... [pkg.DaveG.ca] | | `-- Extracting libxml2-2.14.6: .......... done [pkg.DaveG.ca] | | `-- Installing shared-mime-info-2.4_2... [pkg.DaveG.ca] | | `-- Extracting shared-mime-info-2.4_2: ......... done [pkg.DaveG.ca] | | `-- Extracting gdk-pixbuf2-2.44.1: .......... done [pkg.DaveG.ca] | | `-- Installing libyuv-0.0.1903... [pkg.DaveG.ca] | | `-- Extracting libyuv-0.0.1903: .......... done [pkg.DaveG.ca] | `-- Extracting libavif-1.3.0_2: .......... done [pkg.DaveG.ca] | `-- Installing libimagequant-4.4.1_1... [pkg.DaveG.ca] | `-- Extracting libimagequant-4.4.1_1: ...... done [pkg.DaveG.ca] | `-- Installing libraqm-0.10.3... [pkg.DaveG.ca] | | `-- Installing fribidi-1.0.16... [pkg.DaveG.ca] | | `-- Extracting fribidi-1.0.16: .......... done [pkg.DaveG.ca] | | `-- Installing harfbuzz-12.3.0... [pkg.DaveG.ca] | | `-- Installing graphite2-1.3.14... [pkg.DaveG.ca] | | `-- Extracting graphite2-1.3.14: .......... done [pkg.DaveG.ca] | | `-- Extracting harfbuzz-12.3.0: .......... done [pkg.DaveG.ca] | `-- Extracting libraqm-0.10.3: .......... done [pkg.DaveG.ca] | `-- Installing libxcb-1.17.0... [pkg.DaveG.ca] | | `-- Installing libXau-1.0.12... [pkg.DaveG.ca] | | `-- Extracting libXau-1.0.12: .......... done [pkg.DaveG.ca] | | `-- Installing libXdmcp-1.1.5... [pkg.DaveG.ca] | | `-- Installing xorgproto-2024.1... [pkg.DaveG.ca] | | `-- Extracting xorgproto-2024.1: .......... done [pkg.DaveG.ca] | | `-- Extracting libXdmcp-1.1.5: ...... done [pkg.DaveG.ca] | `-- Extracting libxcb-1.17.0: .......... done [pkg.DaveG.ca] | `-- Installing openjpeg-2.5.4_1... [pkg.DaveG.ca] | `-- Extracting openjpeg-2.5.4_1: .......... done [pkg.DaveG.ca] | `-- Installing py311-olefile-0.46_1... [pkg.DaveG.ca] | `-- Extracting py311-olefile-0.46_1: .......... done [pkg.DaveG.ca] | `-- Installing py311-tkinter-3.11.14_11... [pkg.DaveG.ca] | | `-- Installing libX11-1.8.12,1... [pkg.DaveG.ca] | | `-- Extracting libX11-1.8.12,1: .......... done [pkg.DaveG.ca] | | `-- Installing tcl86-8.6.17... [pkg.DaveG.ca] | | `-- Extracting tcl86-8.6.17: .......... done [pkg.DaveG.ca] | | `-- Installing tk86-8.6.17... [pkg.DaveG.ca] | | `-- Installing libXScrnSaver-1.2.4_1... [pkg.DaveG.ca] | | | `-- Installing libXext-1.3.6,1... [pkg.DaveG.ca] | | | `-- Extracting libXext-1.3.6,1: .......... done [pkg.DaveG.ca] | | `-- Extracting libXScrnSaver-1.2.4_1: .......... done [pkg.DaveG.ca] | | `-- Installing libXft-2.3.8... [pkg.DaveG.ca] | | | `-- Installing libXrender-0.9.12... [pkg.DaveG.ca] | | | `-- Extracting libXrender-0.9.12: ....... done [pkg.DaveG.ca] | | `-- Extracting libXft-2.3.8: .......... done [pkg.DaveG.ca] | | `-- Extracting tk86-8.6.17: .......... done [pkg.DaveG.ca] | `-- Extracting py311-tkinter-3.11.14_11: ...... done [pkg.DaveG.ca] | `-- Installing webp-1.6.0... [pkg.DaveG.ca] | | `-- Installing giflib-5.2.2... [pkg.DaveG.ca] | | `-- Extracting giflib-5.2.2: .......... done [pkg.DaveG.ca] | `-- Extracting webp-1.6.0: .......... done [pkg.DaveG.ca] `-- Extracting py311-pillow-11.3.0_1: .......... done [pkg.DaveG.ca] Extracting py311-reportlab-4.4.3_1: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gdk-pixbuf-query-loaders.ucl Generating gdk-pixbuf modules cache ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ==> Running trigger: shared-mime-info.ucl Building the Shared MIME-Info database cache ===== Message from freetype2-2.14.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from libinotify-20240724_3: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from libraqm-0.10.3: -- ===> NOTICE: The libraqm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> py311-biopython-1.85_2 depends on package: py311-reportlab>0 - found ===> Returning to build of py311-biopython-1.85_2 ===> py311-biopython-1.85_2 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for py311-biopython-1.85_2 ===> Generating temporary packing list running install /usr/local/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Doc/_build/' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'Bio.Align.substitution_matrices.data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'Bio.Align.substitution_matrices.data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'Bio.Align.substitution_matrices.data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'Bio.Entrez.DTDs' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'Bio.Entrez.DTDs' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'Bio.Entrez.DTDs' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.11/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'Bio.Entrez.XSDs' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'Bio.Entrez.XSDs' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'Bio.Entrez.XSDs' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running build_ext running install_lib creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11 creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/cpairwise2.cpython-311.so -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqFeature.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/MarkovModel.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SwissProt copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SwissProt/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SwissProt copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SwissProt/KeyWList.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SwissProt creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Sequencing copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Sequencing/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Sequencing copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Sequencing/Ace.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Sequencing copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Sequencing/Phd.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Sequencing creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Sequencing/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Sequencing/Applications/_Novoalign.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Sequencing/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Sequencing/Applications/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Sequencing/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Sequencing/Applications/_samtools.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Sequencing/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Sequencing/Applications/_bwa.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Sequencing/Applications creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Medline copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Medline/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Medline creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/BaseTree.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/_utils.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/CDAO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/NexusIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/Consensus.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/NeXML.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/_io.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PhyloXML.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PhyloXMLIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/NewickIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/Newick.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/TreeConstruction.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/_cdao_owl.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML/_parse_codeml.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML/_parse_yn00.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML/_paml.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML/codeml.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML/chi2.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML/yn00.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML/_parse_baseml.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/PAML/baseml.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/CDAOIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/Applications/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/Applications/_Raxml.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/Applications/_Phyml.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/Applications/_Fasttree.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Phylo/NeXMLIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/mmcifio.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/HSExposure.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/Structure.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/alphafold_db.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/FragmentMapper.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/ic_data.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/vectors.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/MMCIF2Dict.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/Residue.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/SASA.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/StructureBuilder.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/ResidueDepth.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/DSSP.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/Polypeptide.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/Selection.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/Dice.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/MMCIFParser.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/ccealignmodule.c -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/PDBExceptions.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/StructureAlignment.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/PSEA.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/internal_coords.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/Chain.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/parse_pdb_header.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/Entity.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/cealign.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/PICIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/PDBMLParser.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/bcifhelpermodule.c -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/PDBParser.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/AbstractPropertyMap.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/SCADIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/Atom.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/NACCESS.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/kdtrees.c -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/ic_rebuild.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/qcprot.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/Superimposer.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/ccealign.cpython-311.so -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/Model.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/NeighborSearch.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/binary_cif.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/mmtf copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/mmtf/mmtfio.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/mmtf copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/mmtf/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/mmtf copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/mmtf/DefaultParser.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/mmtf copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/PDBIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/PDBList.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/kdtrees.cpython-311.so -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PDB/_bcif_helper.cpython-311.so -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/_utils.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Data/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Data/CodonTable.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Data/PDBData.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Data/IUPACData.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Data creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/phenotype copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/phenotype/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/phenotype copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/phenotype/pm_fitting.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/phenotype copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/phenotype/phen_micro.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/phenotype copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/pairwise2.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/phrase.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/eLink_101123.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isomopf.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/SP_General.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-list1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/eSpell.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-references1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Access.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/htmltable.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/notat.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isoamsb.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/xhtml-table-1.mod -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/list.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/esummary-v1.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/archivecustom-models.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isodia.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/math.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/HomoloGene.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/archivecustom-classes.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-funding1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isoamsc.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/mathml3-qname1.mod -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/link.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-modules1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/eSummary_041029.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isoamsr.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/pubmed_130101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/mmlextra.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isogrk3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/elink_020122.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isotech.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isogrk1.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/pubmed_150101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/esearch.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/display.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/para.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isocyr2.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/chars.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/pubmed_090101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-notat1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/pubmed_020114.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/eSearch_020511.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/EMBL_General.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/eInfo_020511.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/MMDB_Features.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-para1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/eLink_090910.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isomfrk.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/pubmed_180601.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NSE.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/mmlalias.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/egquery.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-chars1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/elink.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/mathml3.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/OMSSA.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/backmatter.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/archivecustom-modules.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-math1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/BITS-question-answer2.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isocyr1.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/einfo.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/archivearticle.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/SP_General.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/default-mixes.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-section1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/esummary_clinvar.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/taxon.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/ePost_020511.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/GenBank_General.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isobox.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/mathml2.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/PRF_General.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/epost.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/pubmed_180101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isolat1.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/pubmed_100101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-link1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-common1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/PIR_General.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/format.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/journalmeta.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/references.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/section.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/pubmed_190101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/pubmed_140101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/pubmed_080101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/mathmlsetup.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/pubmed_110101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/pubmed_130501.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-format1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/MMDB.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NSE.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isonum.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isoamsn.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/default-classes.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/modules.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/PDB_General.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/MMDB.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Project.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/mathml2-qname-1.mod -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_all.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/esummary_gene.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_General.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/pubmed_100301.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/pubmed_120101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isogrk2.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-display1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isolat2.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isopub.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/common.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/articlemeta.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isogrk4.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isoamsa.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isoamso.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/isomscr.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/pmc-1.dtd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/DTDs/xmlspecchars.ent -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/DTDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/Parser.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/XSDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/XSDs/NCBI_BlastOutput2.mod.xsd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/XSDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/XSDs/IPGReportSet.xsd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/XSDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Entrez/XSDs/NCBI_BlastOutput2.xsd -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/XSDs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/File.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/REST.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/KGML copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/KGML/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/KGML copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/KGML/KGML_parser.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/KGML copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/KGML/KGML_pathway.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/KGML creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/Gene copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/Gene/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/Gene copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/Enzyme copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/Enzyme/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/Enzyme creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/Map copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/Map/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/Map creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/Compound copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/KEGG/Compound/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/Compound copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/HMM copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/HMM/MarkovModel.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/HMM copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/HMM/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/HMM copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/HMM/DynamicProgramming.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/HMM copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/HMM/Utilities.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/HMM copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/HMM/Trainer.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/HMM creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HHsuiteIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HHsuiteIO/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HHsuiteIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HHsuiteIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/_utils.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HmmerIO/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HmmerIO/_base.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/ExonerateIO/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/ExonerateIO/_base.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/BlastIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/BlastIO/blast_xml.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/BlastIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/BlastIO/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/BlastIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/BlastIO/blast_tab.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/BlastIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/BlatIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/_index.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/FastaIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/_model copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/_model/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/_model copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/_model/_base.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/_model copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/_model/hsp.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/_model copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/_model/hit.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/_model copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/_model/query.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/_model creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/InterproscanIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/InterproscanIO/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/InterproscanIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/InterproscanIO creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/CAPS copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/CAPS/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/CAPS creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/TogoWS copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/TogoWS/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/TogoWS creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Alphabet copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Alphabet/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Alphabet copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/cpairwise2module.c -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqRecord.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/ExPASy copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/ExPASy/cellosaurus.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/ExPASy copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/ExPASy/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/ExPASy copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/ExPASy/Enzyme.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/ExPASy copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/ExPASy/Prodoc.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/ExPASy copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/ExPASy/ScanProsite.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/ExPASy copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/ExPASy/Prosite.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/ExPASy copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/NaiveBayes.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Emboss copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Emboss/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Emboss copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Emboss/PrimerSearch.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Emboss copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Emboss/Primer3.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Emboss copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Emboss/Applications.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Emboss creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/PhdIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/InsdcIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/PirIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/NibIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/SeqXmlIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/UniprotIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/AceIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/AbiIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/TwoBitIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/GfaIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/IgIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/PdbIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/SnapGeneIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/_twoBitIO.c -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/_index.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/TabIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/XdnaIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/Interfaces.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/FastaIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/GckIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/_twoBitIO.cpython-311.so -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/SffIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/SwissIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqIO/QualityIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Restriction copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Restriction/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Restriction copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Restriction/Restriction.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Restriction copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Restriction/Restriction_Dictionary.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Restriction copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Restriction/PrintFormat.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Restriction creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Application copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Application/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Application creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Cluster copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Cluster/clustermodule.c -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Cluster copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Cluster/_cluster.cpython-311.so -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Cluster copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Cluster/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Cluster copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Cluster/cluster.c -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Cluster copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Cluster/cluster.h -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Cluster creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/emboss.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/mauve.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/_aligncore.cpython-311.so -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/_pairwisealigner.cpython-311.so -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/analysis.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/bigpsl.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/bigmaf.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/chain.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/psl.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/_codonaligner.cpython-311.so -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/LEVIN -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/RAO -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/BENNER74 -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/MDM78 -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/BLASTP -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/BLASTN -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/BENNER22 -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/DAYHOFF -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/MEGABLAST -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/STR -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/FENG -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/TRANS -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/PAM250 -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/JOHNSON -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/RISLER -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/MCLACHLAN -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/BENNER6 -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/HOXD70 -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM90 -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM80 -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/GONNET1992 -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/JONES -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/NUC.4.4 -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM62 -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM50 -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/BLOSUM45 -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/PAM30 -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/PAM70 -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/GENETIC -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/substitution_matrices/data/SCHNEIDER -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/data copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/msf.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/tabular.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/phylip.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/maf.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/sam.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/_codonaligner.c -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/exonerate.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/AlignInfo.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/bed.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/interfaces.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/clustal.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/fasta.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/a2m.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/_aligncore.c -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/stockholm.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/hhr.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications/_TCoffee.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications/_Muscle.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications/_MSAProbs.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications/_Prank.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications/_Mafft.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications/_Clustalw.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications/_ClustalOmega.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications/_Probcons.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/Applications/_Dialign.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/bigbed.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/nexus.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Align/_pairwisealigner.c -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqUtils copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqUtils/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqUtils copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqUtils/IsoelectricPoint.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqUtils copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqUtils/ProtParamData.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqUtils copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqUtils/MeltingTemp.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqUtils copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqUtils/ProtParam.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqUtils copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqUtils/CheckSum.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqUtils copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SeqUtils/lcc.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqUtils creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/clusterbuster.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/thresholds.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/transfac.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/alignace.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/_pwm.cpython-311.so -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/_pwm.c -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/matrix.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/minimal.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/pfm.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/meme.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/jaspar copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/jaspar/db.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/jaspar copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/jaspar/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/jaspar copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/xms.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/mast.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/applications/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/applications copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/motifs/applications/_xxmotif.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/applications creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram/_Track.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram/_Diagram.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram/_Graph.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram/_Feature.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram/_Colors.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/ColorSpiral.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/Comparative.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/BasicChromosome.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/Distribution.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/DisplayRepresentation.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Graphics/KGML_vis.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/codonalign copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/codonalign/codonalignment.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/codonalign copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/codonalign/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/codonalign copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/codonalign/codonseq.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/codonalign copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/MaxEntropy.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Compass copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Compass/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Compass creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/NMR copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/NMR/NOEtools.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/NMR copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/NMR/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/NMR copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/NMR/xpktools.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/NMR creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/UniProt copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/UniProt/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/UniProt copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/UniProt/GOA.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/UniProt creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Blast copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Blast/NCBIWWW.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Blast copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Blast/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Blast copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Blast/_parser.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Blast copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Blast/_writers.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Blast copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Blast/NCBIXML.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Blast copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Blast/Applications.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Blast creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Affy copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Affy/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Affy copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Affy/CelFile.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Affy copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/py.typed -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/UniGene copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/UniGene/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/UniGene creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SCOP copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SCOP/Hie.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SCOP copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SCOP/Cla.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SCOP copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SCOP/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SCOP copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SCOP/Raf.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SCOP copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SCOP/Dom.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SCOP copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SCOP/Residues.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SCOP copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SCOP/Des.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SCOP creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Nexus copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus/cnexus.cpython-311.so -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Nexus copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus/cnexus.c -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Nexus copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus/Trees.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Nexus copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus/Nodes.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Nexus copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Nexus copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus/StandardData.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Nexus copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Nexus/Nexus.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Nexus copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/LogisticRegression.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/kNN.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Seq.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/bgzf.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO/PhylipIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO/NexusIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO/MsfIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO/StockholmIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO/Interfaces.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO/FastaIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO/MauveIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO/MafIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO/ClustalIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/AlignIO/EmbossIO.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SVDSuperimposer copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/SVDSuperimposer/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SVDSuperimposer creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/GenBank copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/GenBank/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/GenBank copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/GenBank/Record.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/GenBank copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/GenBank/utils.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/GenBank copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/GenBank/Scanner.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/GenBank creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Geo copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Geo/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Geo copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Geo/Record.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Geo creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PopGen copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PopGen/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PopGen creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PopGen/GenePop copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PopGen/GenePop/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PopGen/GenePop copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PopGen/GenePop/FileParser.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PopGen/GenePop copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PopGen/GenePop/EasyController.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PopGen/GenePop copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PopGen/GenePop/Controller.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PopGen/GenePop copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/PopGen/GenePop/LargeFileParser.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PopGen/GenePop creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Pathway copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Pathway/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Pathway creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Pathway/Rep copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Pathway/Rep/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Pathway/Rep copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Pathway/Rep/Graph.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Pathway/Rep copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/Bio/Pathway/Rep/MultiGraph.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Pathway/Rep creating /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/BioSQL copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/BioSQL/BioSeq.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/BioSQL copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/BioSQL/BioSeqDatabase.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/BioSQL copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/BioSQL/__init__.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/BioSQL copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/BioSQL/Loader.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/BioSQL copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/BioSQL/py.typed -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/BioSQL copying build/lib.freebsd-13.5-RELEASE-p7-amd64-cpython-311/BioSQL/DBUtils.py -> /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/BioSQL byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqFeature.py to SeqFeature.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/MarkovModel.py to MarkovModel.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SwissProt/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Sequencing/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Sequencing/Ace.py to Ace.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Sequencing/Phd.py to Phd.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Medline/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/_utils.py to _utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/CDAO.py to CDAO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/Consensus.py to Consensus.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/NeXML.py to NeXML.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/_io.py to _io.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/Newick.py to Newick.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/Structure.py to Structure.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/alphafold_db.py to alphafold_db.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/ic_data.py to ic_data.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/vectors.py to vectors.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/Residue.py to Residue.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/SASA.py to SASA.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/DSSP.py to DSSP.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/Selection.py to Selection.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/Dice.py to Dice.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/PSEA.py to PSEA.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/internal_coords.py to internal_coords.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/Chain.py to Chain.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/Entity.py to Entity.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/cealign.py to cealign.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/PICIO.py to PICIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/PDBMLParser.py to PDBMLParser.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/SCADIO.py to SCADIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/Atom.py to Atom.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/ic_rebuild.py to ic_rebuild.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/qcprot.py to qcprot.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/Model.py to Model.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/binary_cif.py to binary_cif.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/mmtf/mmtfio.py to mmtfio.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PDB/PDBList.py to PDBList.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/_utils.py to _utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Data/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Data/CodonTable.py to CodonTable.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Data/PDBData.py to PDBData.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Data/IUPACData.py to IUPACData.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/phenotype/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/pairwise2.py to pairwise2.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Entrez/Parser.py to Parser.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/File.py to File.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/REST.py to REST.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/HMM/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/HMM/Utilities.py to Utilities.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/HMM/Trainer.py to Trainer.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HHsuiteIO/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py to hhsuite2_text.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/_utils.py to _utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/_index.py to _index.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/_model/_base.py to _base.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/_model/hit.py to hit.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/_model/query.py to query.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/CAPS/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/TogoWS/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Alphabet/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqRecord.py to SeqRecord.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/ExPASy/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Emboss/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Emboss/Primer3.py to Primer3.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Emboss/Applications.py to Applications.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/NibIO.py to NibIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/TwoBitIO.py to TwoBitIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/GfaIO.py to GfaIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/SnapGeneIO.py to SnapGeneIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/_index.py to _index.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/XdnaIO.py to XdnaIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/GckIO.py to GckIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Restriction/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Restriction/Restriction.py to Restriction.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Application/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Cluster/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/emboss.py to emboss.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/mauve.py to mauve.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/analysis.py to analysis.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/bigpsl.py to bigpsl.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/bigmaf.py to bigmaf.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/chain.py to chain.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/psl.py to psl.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/substitution_matrices/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/msf.py to msf.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/tabular.py to tabular.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/phylip.py to phylip.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/maf.py to maf.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/sam.py to sam.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/exonerate.py to exonerate.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/bed.py to bed.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/interfaces.py to interfaces.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/clustal.py to clustal.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/fasta.py to fasta.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/a2m.py to a2m.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/stockholm.py to stockholm.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/hhr.py to hhr.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/bigbed.py to bigbed.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Align/nexus.py to nexus.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqUtils/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SeqUtils/lcc.py to lcc.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/thresholds.py to thresholds.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/transfac.py to transfac.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/alignace.py to alignace.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/matrix.py to matrix.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/minimal.py to minimal.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/pfm.py to pfm.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/meme.py to meme.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/jaspar/db.py to db.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/xms.py to xms.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/mast.py to mast.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/applications/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/Comparative.py to Comparative.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/Distribution.py to Distribution.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/codonalign/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/codonalign/codonseq.py to codonseq.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Compass/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/NMR/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/NMR/xpktools.py to xpktools.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/UniProt/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/UniProt/GOA.py to GOA.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Blast/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Blast/_parser.py to _parser.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Blast/_writers.py to _writers.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Blast/Applications.py to Applications.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Affy/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Affy/CelFile.py to CelFile.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/UniGene/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SCOP/Hie.py to Hie.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SCOP/Cla.py to Cla.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SCOP/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SCOP/Raf.py to Raf.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SCOP/Dom.py to Dom.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SCOP/Residues.py to Residues.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SCOP/Des.py to Des.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Nexus/Trees.py to Trees.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Nexus/Nodes.py to Nodes.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Nexus/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Nexus/StandardData.py to StandardData.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Nexus/Nexus.py to Nexus.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/kNN.py to kNN.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Seq.py to Seq.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/bgzf.py to bgzf.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO/MsfIO.py to MsfIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/GenBank/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/GenBank/Record.py to Record.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/GenBank/utils.py to utils.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/GenBank/Scanner.py to Scanner.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Geo/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Geo/Record.py to Record.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PopGen/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Pathway/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/BioSQL/BioSeq.py to BioSeq.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/BioSQL/__init__.py to __init__.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/BioSQL/Loader.py to Loader.cpython-311.pyc byte-compiling /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/BioSQL/DBUtils.py to DBUtils.cpython-311.pyc writing byte-compilation script '/tmp/tmpxkjtr80r.py' /usr/local/bin/python3.11 /tmp/tmpxkjtr80r.py removing /tmp/tmpxkjtr80r.py running install_egg_info Copying biopython.egg-info to /wrkdirs/usr/ports/biology/py-biopython/work-py311/stage/usr/local/lib/python3.11/site-packages/biopython-1.85-py3.11.egg-info running install_scripts writing list of installed files to '/wrkdirs/usr/ports/biology/py-biopython/work-py311/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-01-23T15:07:36+0000' 'PKG_NOTE_ports_top_git_hash=076a295eb33c' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=b304d8ab18ac' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for py311-biopython-1.85_2 ===> Building py311-biopython-1.85_2 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for py311-biopython-1.85_2 build of biology/py-biopython@py311 | py311-biopython-1.85_2 ended at Fri Jan 23 10:08:49 EST 2026 build time: 00:01:14