=>> Building biology/p5-BioPerl-Run build started at Tue Nov 11 15:04:18 EST 2025 port directory: /usr/ports/biology/p5-BioPerl-Run package name: p5-BioPerl-Run-1.007003 building for: FreeBSD pkg.DaveG.ca 15.0-ALPHA3 FreeBSD 15.0-ALPHA3 1500064 amd64 maintained by: sunpoet@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1237 Aug 27 2024 /usr/ports/biology/p5-BioPerl-Run/Makefile Ports top last git commit: ec159283c191 Ports top unclean checkout: no Port dir last git commit: fb16dfecae4a Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1500064 Job Id: 12 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500064 UNAME_v=FreeBSD 15.0-ALPHA3 1500064 UNAME_r=15.0-ALPHA3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/12/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_15_c_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for p5-BioPerl-Run-1.007003: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- sunpoet@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --install_path lib="/usr/local/lib/perl5/site_perl" --install_path arch="/usr/local/lib/perl5/site_perl/mach/5.42" --install_path script="/usr/local/bin" --install_path bin="/usr/local/bin" --install_path libdoc="/usr/local/lib/perl5/site_perl/man/man3" --install_path bindoc="/usr/local/lib/perl5/site_perl/man/man1" --destdir /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage --perl="/usr/local/bin/perl" --create_packlist 1 CC="cc" CCFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " LD="cc" PREFIX="/usr/local" INSTALLPRIVLIB="/usr/local/lib" INSTALLARCHLIB="/usr/local/lib" --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/p5-BioPerl-Run/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/p5-BioPerl-Run/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/.cache HOME=/wrkdirs/usr/ports/biology/p5-BioPerl-Run/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh PERL_EXTUTILS_AUTOINSTALL="--skipdeps" PERL_MM_USE_DEFAULT="YES" --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/p5-BioPerl-Run/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/p5-BioPerl-Run/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/.cache HOME=/wrkdirs/usr/ports/biology/p5-BioPerl-Run/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.42.0 PERL_VER=5.42 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.42 DOCSDIR="share/doc/BioPerl-Run" EXAMPLESDIR="share/examples/BioPerl-Run" DATADIR="share/BioPerl-Run" WWWDIR="www/BioPerl-Run" ETCDIR="etc/BioPerl-Run" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/BioPerl-Run DOCSDIR=/usr/local/share/doc/BioPerl-Run EXAMPLESDIR=/usr/local/share/examples/BioPerl-Run WWWDIR=/usr/local/www/BioPerl-Run ETCDIR=/usr/local/etc/BioPerl-Run --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> p5-BioPerl-Run-1.007003 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.4.2_1.pkg [pkg.DaveG.ca] Installing pkg-2.4.2_1... [pkg.DaveG.ca] Extracting pkg-2.4.2_1: .......... done ===> p5-BioPerl-Run-1.007003 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of p5-BioPerl-Run-1.007003 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by p5-BioPerl-Run-1.007003 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by p5-BioPerl-Run-1.007003 for building => SHA256 Checksum OK for BioPerl-Run-1.007003.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by p5-BioPerl-Run-1.007003 for building ===> Extracting for p5-BioPerl-Run-1.007003 => SHA256 Checksum OK for BioPerl-Run-1.007003.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for p5-BioPerl-Run-1.007003 ===> Applying FreeBSD patches for p5-BioPerl-Run-1.007003 from /usr/ports/biology/p5-BioPerl-Run/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> p5-BioPerl-Run-1.007003 depends on package: p5-Algorithm-Diff>=0 - not found ===> Installing existing package /packages/All/p5-Algorithm-Diff-1.1903.pkg [pkg.DaveG.ca] Installing p5-Algorithm-Diff-1.1903... [pkg.DaveG.ca] `-- Installing perl5-5.42.0_1... [pkg.DaveG.ca] `-- Extracting perl5-5.42.0_1: .......... done [pkg.DaveG.ca] Extracting p5-Algorithm-Diff-1.1903: ......... done ===> p5-BioPerl-Run-1.007003 depends on package: p5-Algorithm-Diff>=0 - found ===> Returning to build of p5-BioPerl-Run-1.007003 ===> p5-BioPerl-Run-1.007003 depends on package: p5-Bio-Cluster>=0 - not found ===> Installing existing package /packages/All/p5-Bio-Cluster-1.7.3_1.pkg [pkg.DaveG.ca] Installing p5-Bio-Cluster-1.7.3_1... [pkg.DaveG.ca] `-- Installing p5-Bio-Variation-1.7.5... [pkg.DaveG.ca] | `-- Installing p5-BioPerl-1.007008... [pkg.DaveG.ca] | | `-- Installing p5-Data-Stag-0.14_2... [pkg.DaveG.ca] | | `-- Installing p5-IO-String-1.08_1... [pkg.DaveG.ca] | | `-- Extracting p5-IO-String-1.08_1: ... done [pkg.DaveG.ca] | | `-- Extracting p5-Data-Stag-0.14_2: .......... done [pkg.DaveG.ca] | | `-- Installing p5-Error-0.17030... [pkg.DaveG.ca] | | `-- Extracting p5-Error-0.17030: ..... done [pkg.DaveG.ca] | | `-- Installing p5-Graph-0.9735,1... [pkg.DaveG.ca] | | `-- Installing p5-Heap-0.80_1... [pkg.DaveG.ca] | | `-- Extracting p5-Heap-0.80_1: .......... done [pkg.DaveG.ca] | | `-- Installing p5-Set-Object-1.43... [pkg.DaveG.ca] | | `-- Extracting p5-Set-Object-1.43: ........ done [pkg.DaveG.ca] | | `-- Extracting p5-Graph-0.9735,1: .......... done [pkg.DaveG.ca] | | `-- Installing p5-HTTP-Message-7.01... [pkg.DaveG.ca] | | `-- Installing p5-Clone-0.47... [pkg.DaveG.ca] | | `-- Extracting p5-Clone-0.47: ..... done [pkg.DaveG.ca] | | `-- Installing p5-Encode-Locale-1.05... [pkg.DaveG.ca] | | `-- Extracting p5-Encode-Locale-1.05: ... done [pkg.DaveG.ca] | | `-- Installing p5-HTTP-Date-6.06... [pkg.DaveG.ca] | | | `-- Installing p5-TimeDate-2.33,1... [pkg.DaveG.ca] | | | `-- Extracting p5-TimeDate-2.33,1: .......... done [pkg.DaveG.ca] | | `-- Extracting p5-HTTP-Date-6.06: ... done [pkg.DaveG.ca] | | `-- Installing p5-IO-HTML-1.004... [pkg.DaveG.ca] | | `-- Extracting p5-IO-HTML-1.004: ... done [pkg.DaveG.ca] | | `-- Installing p5-LWP-MediaTypes-6.04... [pkg.DaveG.ca] | | `-- Extracting p5-LWP-MediaTypes-6.04: .... done [pkg.DaveG.ca] | | `-- Installing p5-URI-5.34... [pkg.DaveG.ca] | | | `-- Installing p5-MIME-Base32-1.303... [pkg.DaveG.ca] | | | `-- Extracting p5-MIME-Base32-1.303: ... done [pkg.DaveG.ca] | | | `-- Installing p5-MIME-Base64-3.16... [pkg.DaveG.ca] | | | `-- Extracting p5-MIME-Base64-3.16: ...... done [pkg.DaveG.ca] | | `-- Extracting p5-URI-5.34: .......... done [pkg.DaveG.ca] | | `-- Extracting p5-HTTP-Message-7.01: .......... done [pkg.DaveG.ca] | | `-- Installing p5-IO-Stringy-2.113... [pkg.DaveG.ca] | | `-- Extracting p5-IO-Stringy-2.113: .......... done [pkg.DaveG.ca] | | `-- Installing p5-IPC-Run-20231003.0... [pkg.DaveG.ca] | | `-- Installing p5-IO-Tty-1.20_1... [pkg.DaveG.ca] | | `-- Extracting p5-IO-Tty-1.20_1: ........ done [pkg.DaveG.ca] | | `-- Extracting p5-IPC-Run-20231003.0: .......... done [pkg.DaveG.ca] | | `-- Installing p5-List-MoreUtils-0.430... [pkg.DaveG.ca] | | `-- Installing p5-Exporter-Tiny-1.006002... [pkg.DaveG.ca] | | `-- Extracting p5-Exporter-Tiny-1.006002: .......... done [pkg.DaveG.ca] | | `-- Installing p5-List-MoreUtils-XS-0.430... [pkg.DaveG.ca] | | `-- Extracting p5-List-MoreUtils-XS-0.430: .... done [pkg.DaveG.ca] | | `-- Extracting p5-List-MoreUtils-0.430: ....... done [pkg.DaveG.ca] | | `-- Installing p5-Module-Build-0.4234... [pkg.DaveG.ca] | | `-- Extracting p5-Module-Build-0.4234: .......... done [pkg.DaveG.ca] | | `-- Installing p5-Set-Scalar-1.29... [pkg.DaveG.ca] | | `-- Extracting p5-Set-Scalar-1.29: .......... done [pkg.DaveG.ca] | | `-- Installing p5-Test-Most-0.38... [pkg.DaveG.ca] | | `-- Installing p5-Exception-Class-1.45... [pkg.DaveG.ca] | | | `-- Installing p5-Class-Data-Inheritable-0.10... [pkg.DaveG.ca] | | | `-- Extracting p5-Class-Data-Inheritable-0.10: ... done [pkg.DaveG.ca] | | | `-- Installing p5-Devel-StackTrace-2.05... [pkg.DaveG.ca] | | | `-- Extracting p5-Devel-StackTrace-2.05: ..... done [pkg.DaveG.ca] | | `-- Extracting p5-Exception-Class-1.45: ..... done [pkg.DaveG.ca] | | `-- Installing p5-Test-Deep-1.205... [pkg.DaveG.ca] | | `-- Extracting p5-Test-Deep-1.205: .......... done [pkg.DaveG.ca] | | `-- Installing p5-Test-Differences-0.710,1... [pkg.DaveG.ca] | | | `-- Installing p5-Text-Diff-1.45... [pkg.DaveG.ca] | | | `-- Extracting p5-Text-Diff-1.45: ....... done [pkg.DaveG.ca] | | `-- Extracting p5-Test-Differences-0.710,1: ... done [pkg.DaveG.ca] | | `-- Installing p5-Test-Exception-0.43... [pkg.DaveG.ca] | | | `-- Installing p5-Sub-Uplevel-0.2800... [pkg.DaveG.ca] | | | `-- Extracting p5-Sub-Uplevel-0.2800: ... done [pkg.DaveG.ca] | | `-- Extracting p5-Test-Exception-0.43: ... done [pkg.DaveG.ca] | | `-- Installing p5-Test-Warn-0.37... [pkg.DaveG.ca] | | `-- Extracting p5-Test-Warn-0.37: ... done [pkg.DaveG.ca] | | `-- Extracting p5-Test-Most-0.38: ..... done [pkg.DaveG.ca] | | `-- Installing p5-Test-RequiresInternet-0.05... [pkg.DaveG.ca] | | `-- Extracting p5-Test-RequiresInternet-0.05: ... done [pkg.DaveG.ca] | | `-- Installing p5-XML-DOM-1.46... [pkg.DaveG.ca] | | `-- Installing p5-XML-Parser-2.47... [pkg.DaveG.ca] | | | `-- Installing expat-2.7.3... [pkg.DaveG.ca] | | | `-- Extracting expat-2.7.3: .......... done [pkg.DaveG.ca] | | `-- Extracting p5-XML-Parser-2.47: .......... done [pkg.DaveG.ca] | | `-- Installing p5-XML-RegExp-0.04_1... [pkg.DaveG.ca] | | `-- Extracting p5-XML-RegExp-0.04_1: ... done [pkg.DaveG.ca] | | `-- Installing p5-libwww-6.81... [pkg.DaveG.ca] | | | `-- Installing p5-Authen-NTLM-1.09_1... [pkg.DaveG.ca] | | | `-- Installing p5-Digest-HMAC-1.05... [pkg.DaveG.ca] | | | `-- Extracting p5-Digest-HMAC-1.05: ....... done [pkg.DaveG.ca] | | | `-- Extracting p5-Authen-NTLM-1.09_1: ..... done [pkg.DaveG.ca] | | | `-- Installing p5-File-Listing-6.16... [pkg.DaveG.ca] | | | `-- Extracting p5-File-Listing-6.16: ... done [pkg.DaveG.ca] | | | `-- Installing p5-HTML-Parser-3.83... [pkg.DaveG.ca] | | | `-- Installing p5-HTML-Tagset-3.24... [pkg.DaveG.ca] | | | `-- Extracting p5-HTML-Tagset-3.24: ... done [pkg.DaveG.ca] | | | `-- Extracting p5-HTML-Parser-3.83: .......... done [pkg.DaveG.ca] | | | `-- Installing p5-HTTP-Cookies-6.11... [pkg.DaveG.ca] | | | `-- Extracting p5-HTTP-Cookies-6.11: ....... done [pkg.DaveG.ca] | | | `-- Installing p5-HTTP-Negotiate-6.01_1... [pkg.DaveG.ca] | | | `-- Extracting p5-HTTP-Negotiate-6.01_1: ... done [pkg.DaveG.ca] | | | `-- Installing p5-Net-HTTP-6.24... [pkg.DaveG.ca] | | | `-- Installing p5-IO-Socket-SSL-2.095... [pkg.DaveG.ca] | | | | `-- Installing p5-Mozilla-CA-20250602... [pkg.DaveG.ca] | | | | `-- Extracting p5-Mozilla-CA-20250602: .... done [pkg.DaveG.ca] | | | | `-- Installing p5-Net-SSLeay-1.94... [pkg.DaveG.ca] | | | | `-- Extracting p5-Net-SSLeay-1.94: .......... done [pkg.DaveG.ca] | | | `-- Extracting p5-IO-Socket-SSL-2.095: .......... done [pkg.DaveG.ca] | | | `-- Extracting p5-Net-HTTP-6.24: ......... done [pkg.DaveG.ca] | | | `-- Installing p5-Try-Tiny-0.32... [pkg.DaveG.ca] | | | `-- Extracting p5-Try-Tiny-0.32: ... done [pkg.DaveG.ca] | | | `-- Installing p5-WWW-RobotRules-6.02_1... [pkg.DaveG.ca] | | | `-- Extracting p5-WWW-RobotRules-6.02_1: ..... done [pkg.DaveG.ca] | | `-- Extracting p5-libwww-6.81: .......... done [pkg.DaveG.ca] | | `-- Installing p5-libxml-0.08_1... [pkg.DaveG.ca] | | `-- Extracting p5-libxml-0.08_1: .......... done [pkg.DaveG.ca] | | `-- Extracting p5-XML-DOM-1.46: .......... done [pkg.DaveG.ca] | | `-- Installing p5-XML-LibXML-2.0210_1,1... [pkg.DaveG.ca] | | `-- Installing libxml2-2.14.6... [pkg.DaveG.ca] | | | `-- Installing readline-8.3.1... [pkg.DaveG.ca] | | | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | | | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | | | `-- Extracting readline-8.3.1: .......... done [pkg.DaveG.ca] | | `-- Extracting libxml2-2.14.6: .......... done [pkg.DaveG.ca] | | `-- Installing p5-XML-NamespaceSupport-1.12... [pkg.DaveG.ca] | | `-- Extracting p5-XML-NamespaceSupport-1.12: ... done [pkg.DaveG.ca] | | `-- Installing p5-XML-SAX-1.02... [pkg.DaveG.ca] | | | `-- Installing p5-XML-SAX-Base-1.09... [pkg.DaveG.ca] | | | `-- Extracting p5-XML-SAX-Base-1.09: ....... done [pkg.DaveG.ca] | | `-- Extracting p5-XML-SAX-1.02: .......... done could not find ParserDetails.ini in /usr/local/lib/perl5/site_perl/XML/SAX [pkg.DaveG.ca] | | `-- Extracting p5-XML-LibXML-2.0210_1,1: .......... done [pkg.DaveG.ca] | | `-- Installing p5-XML-SAX-Writer-0.57... [pkg.DaveG.ca] | | `-- Installing p5-XML-Filter-BufferText-1.01_1... [pkg.DaveG.ca] | | `-- Extracting p5-XML-Filter-BufferText-1.01_1: ... done [pkg.DaveG.ca] | | `-- Extracting p5-XML-SAX-Writer-0.57: ..... done [pkg.DaveG.ca] | | `-- Installing p5-XML-Twig-3.54... [pkg.DaveG.ca] | | `-- Installing p5-HTML-Entities-Numbered-0.04_1... [pkg.DaveG.ca] | | `-- Extracting p5-HTML-Entities-Numbered-0.04_1: ..... done [pkg.DaveG.ca] | | `-- Installing p5-HTML-Tree-5.07... [pkg.DaveG.ca] | | `-- Extracting p5-HTML-Tree-5.07: .......... done [pkg.DaveG.ca] | | `-- Installing p5-Text-Iconv-1.7_4... [pkg.DaveG.ca] | | | `-- Installing libiconv-1.18... [pkg.DaveG.ca] | | | `-- Extracting libiconv-1.18: .......... done [pkg.DaveG.ca] | | `-- Extracting p5-Text-Iconv-1.7_4: ..... done [pkg.DaveG.ca] | | `-- Installing p5-Tie-IxHash-1.23_1... [pkg.DaveG.ca] | | `-- Extracting p5-Tie-IxHash-1.23_1: ... done [pkg.DaveG.ca] | | `-- Installing p5-XML-XPath-1.48... [pkg.DaveG.ca] | | `-- Extracting p5-XML-XPath-1.48: .......... done [pkg.DaveG.ca] | | `-- Installing p5-XML-XPathEngine-0.14_1... [pkg.DaveG.ca] | | `-- Extracting p5-XML-XPathEngine-0.14_1: .......... done [pkg.DaveG.ca] | | `-- Extracting p5-XML-Twig-3.54: .......... done [pkg.DaveG.ca] | | `-- Installing p5-XML-Writer-0.900... [pkg.DaveG.ca] | | `-- Extracting p5-XML-Writer-0.900: ... done [pkg.DaveG.ca] | | `-- Installing p5-YAML-1.31... [pkg.DaveG.ca] | | `-- Extracting p5-YAML-1.31: .......... done [pkg.DaveG.ca] | `-- Extracting p5-BioPerl-1.007008: .......... done [pkg.DaveG.ca] `-- Extracting p5-Bio-Variation-1.7.5: .......... done [pkg.DaveG.ca] Extracting p5-Bio-Cluster-1.7.3_1: .......... done ===> p5-BioPerl-Run-1.007003 depends on package: p5-Bio-Cluster>=0 - found ===> Returning to build of p5-BioPerl-Run-1.007003 ===> p5-BioPerl-Run-1.007003 depends on package: p5-Bio-FeatureIO>=0 - not found ===> Installing existing package /packages/All/p5-Bio-FeatureIO-1.6.905.pkg [pkg.DaveG.ca] Installing p5-Bio-FeatureIO-1.6.905... [pkg.DaveG.ca] `-- Installing p5-Tree-DAG_Node-1.35... [pkg.DaveG.ca] | `-- Installing p5-File-Slurp-Tiny-0.004... [pkg.DaveG.ca] | `-- Extracting p5-File-Slurp-Tiny-0.004: ... done [pkg.DaveG.ca] `-- Extracting p5-Tree-DAG_Node-1.35: ... done [pkg.DaveG.ca] `-- Installing p5-XML-DOM-XPath-0.14_1... [pkg.DaveG.ca] `-- Extracting p5-XML-DOM-XPath-0.14_1: ... done [pkg.DaveG.ca] Extracting p5-Bio-FeatureIO-1.6.905: .......... done ===> p5-BioPerl-Run-1.007003 depends on package: p5-Bio-FeatureIO>=0 - found ===> Returning to build of p5-BioPerl-Run-1.007003 ===> p5-BioPerl-Run-1.007003 depends on package: p5-BioPerl>=1.007000 - found ===> p5-BioPerl-Run-1.007003 depends on package: p5-Config-Any>=0 - not found ===> Installing existing package /packages/All/p5-Config-Any-0.33.pkg [pkg.DaveG.ca] Installing p5-Config-Any-0.33... [pkg.DaveG.ca] `-- Installing p5-Config-General-2.67... [pkg.DaveG.ca] `-- Extracting p5-Config-General-2.67: ....... done [pkg.DaveG.ca] `-- Installing p5-Config-Tiny-2.30... [pkg.DaveG.ca] `-- Extracting p5-Config-Tiny-2.30: ... done [pkg.DaveG.ca] `-- Installing p5-Cpanel-JSON-XS-4.40... [pkg.DaveG.ca] `-- Extracting p5-Cpanel-JSON-XS-4.40: .......... done [pkg.DaveG.ca] `-- Installing p5-Module-Pluggable-5.2... [pkg.DaveG.ca] `-- Extracting p5-Module-Pluggable-5.2: ....... done [pkg.DaveG.ca] `-- Installing p5-XML-Simple-2.25... [pkg.DaveG.ca] | `-- Installing p5-XML-SAX-Expat-0.51_1... [pkg.DaveG.ca] | `-- Extracting p5-XML-SAX-Expat-0.51_1: ... done [pkg.DaveG.ca] `-- Extracting p5-XML-Simple-2.25: ..... done [pkg.DaveG.ca] `-- Installing p5-YAML-LibYAML-0.90... [pkg.DaveG.ca] `-- Extracting p5-YAML-LibYAML-0.90: .......... done [pkg.DaveG.ca] Extracting p5-Config-Any-0.33: .......... done ===> p5-BioPerl-Run-1.007003 depends on package: p5-Config-Any>=0 - found ===> Returning to build of p5-BioPerl-Run-1.007003 ===> p5-BioPerl-Run-1.007003 depends on package: p5-File-Sort>=0 - not found ===> Installing existing package /packages/All/p5-File-Sort-1.01_1.pkg [pkg.DaveG.ca] Installing p5-File-Sort-1.01_1... [pkg.DaveG.ca] Extracting p5-File-Sort-1.01_1: ... done ===> p5-BioPerl-Run-1.007003 depends on package: p5-File-Sort>=0 - found ===> Returning to build of p5-BioPerl-Run-1.007003 ===> p5-BioPerl-Run-1.007003 depends on package: p5-IO-String>=0 - found ===> p5-BioPerl-Run-1.007003 depends on package: p5-IPC-Run>=0 - found ===> p5-BioPerl-Run-1.007003 depends on package: p5-XML-Twig>=0 - found ===> p5-BioPerl-Run-1.007003 depends on package: perl5>=5.42.r<5.43 - found ===> p5-BioPerl-Run-1.007003 depends on package: p5-Module-Build>=0.4234 - found ===> p5-BioPerl-Run-1.007003 depends on package: perl5>=5.42.r<5.43 - found ===> p5-BioPerl-Run-1.007003 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> p5-BioPerl-Run-1.007003 depends on file: /usr/local/bin/ccache - found ===> Returning to build of p5-BioPerl-Run-1.007003 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for p5-BioPerl-Run-1.007003 - will not run internet-requiring tests Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'BioPerl-Run' version '1.007003' =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for p5-BioPerl-Run-1.007003 Building BioPerl-Run =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> p5-BioPerl-Run-1.007003 depends on package: p5-Algorithm-Diff>=0 - found ===> p5-BioPerl-Run-1.007003 depends on package: p5-Bio-Cluster>=0 - found ===> p5-BioPerl-Run-1.007003 depends on package: p5-Bio-FeatureIO>=0 - found ===> p5-BioPerl-Run-1.007003 depends on package: p5-BioPerl>=1.007000 - found ===> p5-BioPerl-Run-1.007003 depends on package: p5-Config-Any>=0 - found ===> p5-BioPerl-Run-1.007003 depends on package: p5-File-Sort>=0 - found ===> p5-BioPerl-Run-1.007003 depends on package: p5-IO-String>=0 - found ===> p5-BioPerl-Run-1.007003 depends on package: p5-IPC-Run>=0 - found ===> p5-BioPerl-Run-1.007003 depends on package: p5-XML-Twig>=0 - found ===> p5-BioPerl-Run-1.007003 depends on package: perl5>=5.42.r<5.43 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for p5-BioPerl-Run-1.007003 ===> Generating temporary packing list Building BioPerl-Run Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/DB/SoapEUtilities.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/DB/ESoap.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/DB/ESoap/WSDL.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/DB/SoapEUtilities/Result.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/DB/SoapEUtilities/GQueryAdaptor.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/DB/SoapEUtilities/DocSumAdaptor.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/DB/SoapEUtilities/LinkAdaptor.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/DB/SoapEUtilities/FetchAdaptor.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/DB/SoapEUtilities/FetchAdaptor/species.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/DB/SoapEUtilities/FetchAdaptor/seq.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Factory/EMBOSS.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Seg.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Genemark.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Tmhmm.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/StandAloneBlastPlus.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/FootPrinter.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/BlastPlus.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Genscan.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/RNAMotif.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Primate.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Infernal.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Promoterwise.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/StandAloneBlast.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Hmmer.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Profile.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Mdust.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/EMBOSSacd.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Coil.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Glimmer.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Primer3.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Signalp.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/StandAloneNCBIBlast.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Pseudowise.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/TribeMCL.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Eponine.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Match.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/BEDTools.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/tRNAscanSE.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Genewise.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/EMBOSSApplication.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/StandAloneWUBlast.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/RepeatMasker.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/ERPIN.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Samtools.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Ensembl.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Prints.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/MCS.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Vista.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Simprot.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Semphy.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/LVB.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Raxml.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phyml.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/QuickTree.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/SLR.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Gerp.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/FastTree.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phast/PhastCons.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phast/PhyloFit.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Molphy/ProtML.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/Base.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/REL.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/SLAC.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/Modeltest.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/FEL.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Hyphy/BatchFile.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/Base.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/Consense.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Phylo/Njtree/Best.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Analysis/soap.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Samtools/Config.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/BlastPlus/Config.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Alignment/MSAProbs.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Alignment/Sim4.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Alignment/Proda.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Alignment/MAFFT.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Alignment/Muscle.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Alignment/Amap.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Alignment/Probalign.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Alignment/Lagan.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Alignment/Pal2Nal.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Alignment/Probcons.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Alignment/Blat.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Alignment/StandAloneFasta.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Alignment/Gmap.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Alignment/Exonerate.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Alignment/DBA.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/Alignment/Kalign.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/BEDTools/Config.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/Bio/Tools/Run/AnalysisFactory/soap.pm Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Exonerate.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Profile.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::REL.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Muscle.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Tmhmm.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Ensembl.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Hmmer.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Blat.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Kalign.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::LVB.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Semphy.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::MAFFT.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Primer3.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::FootPrinter.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Genscan.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::ERPIN.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Infernal.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Lagan.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Genemark.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::FEL.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Promoterwise.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::Base.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Match.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::GQueryAdaptor.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::StandAloneFasta.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor::seq.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::MCS.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::EMBOSSacd.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::ESoap.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::BEDTools.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Prints.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::EMBOSSApplication.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::Result.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Primate.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Pseudowise.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Molphy::ProtML.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::MSAProbs.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::Modeltest.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::FastTree.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::RNAMotif.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::Neighbor.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::Consense.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phyml.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Proda.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Simprot.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::QuickTree.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::DrawGram.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::BEDTools::Config.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::StandAloneBlast.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Glimmer.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Mdust.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::SLAC.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Factory::EMBOSS.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Signalp.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Gerp.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Amap.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Coil.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::ESoap::WSDL.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::TribeMCL.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtDist.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::RepeatMasker.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::DocSumAdaptor.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Analysis::soap.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Raxml.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phast::PhastCons.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::BatchFile.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Njtree::Best.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::StandAloneWUBlast.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phast::PhyloFit.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Pal2Nal.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Samtools::Config.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::StandAloneNCBIBlast.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::PhylipConf.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Probalign.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::DBA.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::StandAloneBlastPlus.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::tRNAscanSE.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Gmap.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Probcons.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::SLR.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::StandAloneBlastPlus::BlastMethods.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::DrawTree.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::LinkAdaptor.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Seg.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Eponine.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Genewise.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Samtools.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::AnalysisFactory::soap.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::SeqBoot.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Phylip::ProtPars.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::DB::SoapEUtilities::FetchAdaptor::species.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::BlastPlus.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Alignment::Sim4.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Vista.3 Installing /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::Tools::Run::Phylo::Hyphy::Base.3 install -m 555 /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/BioPerl-Run-1.007003/scripts/multi_hmmsearch.PLS /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/bin/bp_multi_hmmsearch install -m 555 /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/BioPerl-Run-1.007003/scripts/panalysis.PLS /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/bin/bp_panalysis install -m 555 /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/BioPerl-Run-1.007003/scripts/papplmaker.PLS /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/bin/bp_papplmaker install -m 555 /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/BioPerl-Run-1.007003/scripts/run_neighbor.PLS /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/bin/bp_run_neighbor install -m 555 /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/BioPerl-Run-1.007003/scripts/run_protdist.PLS /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/bin/bp_run_protdist cd /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/BioPerl-Run-1.007003 && install -m 0644 AUTHORS Changes INSTALL.PROGRAMS README.md /wrkdirs/usr/ports/biology/p5-BioPerl-Run/work/stage/usr/local/share/doc/BioPerl-Run ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-11-11T20:04:18+0000' 'PKG_NOTE_ports_top_git_hash=ec159283c191' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=fb16dfecae4a' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for p5-BioPerl-Run-1.007003 ===> Building p5-BioPerl-Run-1.007003 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for p5-BioPerl-Run-1.007003 build of biology/p5-BioPerl-Run | p5-BioPerl-Run-1.007003 ended at Tue Nov 11 15:04:29 EST 2025 build time: 00:00:12