=>> Building biology/p5-Bio-NEXUS build started at Tue Mar 17 11:09:14 EDT 2026 port directory: /usr/ports/biology/p5-Bio-NEXUS package name: p5-Bio-NEXUS-0.78_1 building for: FreeBSD pkg.DaveG.ca 15.0-RELEASE-p3 FreeBSD 15.0-RELEASE-p3 1500068 amd64 maintained by: perl@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 551 Aug 27 2024 /usr/ports/biology/p5-Bio-NEXUS/Makefile Ports top last git commit: 8c988f802ea2 Ports top unclean checkout: no Port dir last git commit: fb16dfecae4a Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1500068 Job Id: 15 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500068 UNAME_v=FreeBSD 15.0-RELEASE-p3 1500068 UNAME_r=15.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/15/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_15_0_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- perl@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- INSTALLDIRS="site" CC="cc" CCFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " LD="cc" PREFIX="/usr/local" INSTALLPRIVLIB="/usr/local/lib" INSTALLARCHLIB="/usr/local/lib" --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/.cache HOME=/wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh PERL_EXTUTILS_AUTOINSTALL="--skipdeps" PERL_MM_USE_DEFAULT="YES" --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/.cache HOME=/wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.42.1 PERL_VER=5.42 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.42 DOCSDIR="share/doc/Bio-NEXUS" EXAMPLESDIR="share/examples/Bio-NEXUS" DATADIR="share/Bio-NEXUS" WWWDIR="www/Bio-NEXUS" ETCDIR="etc/Bio-NEXUS" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/Bio-NEXUS DOCSDIR=/usr/local/share/doc/Bio-NEXUS EXAMPLESDIR=/usr/local/share/examples/Bio-NEXUS WWWDIR=/usr/local/www/Bio-NEXUS ETCDIR=/usr/local/etc/Bio-NEXUS --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> p5-Bio-NEXUS-0.78_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.6.2.pkg [pkg.DaveG.ca] Installing pkg-2.6.2... [pkg.DaveG.ca] Extracting pkg-2.6.2: .......... done ===> p5-Bio-NEXUS-0.78_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of p5-Bio-NEXUS-0.78_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by p5-Bio-NEXUS-0.78_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by p5-Bio-NEXUS-0.78_1 for building => SHA256 Checksum OK for Bio-NEXUS-0.78.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by p5-Bio-NEXUS-0.78_1 for building ===> Extracting for p5-Bio-NEXUS-0.78_1 => SHA256 Checksum OK for Bio-NEXUS-0.78.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for p5-Bio-NEXUS-0.78_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> p5-Bio-NEXUS-0.78_1 depends on package: p5-Clone-PP>=1.02 - not found ===> Installing existing package /packages/All/p5-Clone-PP-1.08.pkg [pkg.DaveG.ca] Installing p5-Clone-PP-1.08... [pkg.DaveG.ca] `-- Installing perl5-5.42.1... [pkg.DaveG.ca] `-- Extracting perl5-5.42.1: .......... done [pkg.DaveG.ca] Extracting p5-Clone-PP-1.08: ... done ===> p5-Bio-NEXUS-0.78_1 depends on package: p5-Clone-PP>=1.02 - found ===> Returning to build of p5-Bio-NEXUS-0.78_1 ===> p5-Bio-NEXUS-0.78_1 depends on package: perl5>=5.42.r<5.43 - found ===> p5-Bio-NEXUS-0.78_1 depends on package: perl5>=5.42.r<5.43 - found ===> p5-Bio-NEXUS-0.78_1 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> p5-Bio-NEXUS-0.78_1 depends on file: /usr/local/bin/ccache - found ===> Returning to build of p5-Bio-NEXUS-0.78_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for p5-Bio-NEXUS-0.78_1 *** You don't seem to have Test::Deep installed. This means some functionality won't be available (though core functionality will be). Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::NEXUS Writing MYMETA.yml and MYMETA.json =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for p5-Bio-NEXUS-0.78_1 --- blib/lib/Bio/.exists --- --- blib/arch/.exists --- --- blib/lib/auto/Bio/NEXUS/.exists --- --- blib/arch/auto/Bio/NEXUS/.exists --- --- blib/bin/.exists --- --- blib/script/.exists --- --- blib/man1/.exists --- --- blib/man3/.exists --- --- config --- --- subdirs --- --- dynamic --- --- pm_to_blib --- --- blib/script/nex2text_tree.pl --- --- blib/script/nexplot.pl --- --- blib/script/nextool.pl --- --- blibdirs --- --- blib/script/nex2text_tree.pl --- cp exec/nex2text_tree.pl blib/script/nex2text_tree.pl --- blib/script/nexplot.pl --- cp exec/nexplot.pl blib/script/nexplot.pl --- blib/script/nextool.pl --- cp exec/nextool.pl blib/script/nextool.pl --- config --- --- blib/script/nex2text_tree.pl --- "/usr/local/bin/perl5.42.1" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/nex2text_tree.pl --- blib/script/nexplot.pl --- "/usr/local/bin/perl5.42.1" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/nexplot.pl --- blib/script/nextool.pl --- "/usr/local/bin/perl5.42.1" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/nextool.pl --- dynamic --- --- linkext --- --- pm_to_blib --- cp lib/Bio/NEXUS/HistoryBlock.pm blib/lib/Bio/NEXUS/HistoryBlock.pm cp lib/Bio/NEXUS/Node.pm blib/lib/Bio/NEXUS/Node.pm cp lib/Bio/NEXUS/Util/Exceptions.pm blib/lib/Bio/NEXUS/Util/Exceptions.pm cp lib/Bio/NEXUS/UnknownBlock.pm blib/lib/Bio/NEXUS/UnknownBlock.pm cp lib/Bio/NEXUS/Block.pm blib/lib/Bio/NEXUS/Block.pm cp lib/Bio/NEXUS/Tree.pm blib/lib/Bio/NEXUS/Tree.pm cp lib/Bio/NEXUS/UnalignedBlock.pm blib/lib/Bio/NEXUS/UnalignedBlock.pm cp lib/Bio/NEXUS/Tools/NexPlotter.pm blib/lib/Bio/NEXUS/Tools/NexPlotter.pm cp lib/Bio/NEXUS/NHXCmd.pm blib/lib/Bio/NEXUS/NHXCmd.pm cp lib/Bio/NEXUS/Functions.pm blib/lib/Bio/NEXUS/Functions.pm cp lib/Bio/NEXUS/Tools/NexModifier.pm blib/lib/Bio/NEXUS/Tools/NexModifier.pm cp lib/Bio/NEXUS/SetsBlock.pm blib/lib/Bio/NEXUS/SetsBlock.pm cp lib/Bio/NEXUS/DistancesBlock.pm blib/lib/Bio/NEXUS/DistancesBlock.pm cp lib/Bio/NEXUS/TaxUnitSet.pm blib/lib/Bio/NEXUS/TaxUnitSet.pm cp lib/Bio/NEXUS/TreesBlock.pm blib/lib/Bio/NEXUS/TreesBlock.pm cp lib/Bio/NEXUS/DataBlock.pm blib/lib/Bio/NEXUS/DataBlock.pm cp lib/Bio/NEXUS/Util/Logger.pm blib/lib/Bio/NEXUS/Util/Logger.pm cp lib/Bio/NEXUS/Matrix.pm blib/lib/Bio/NEXUS/Matrix.pm cp lib/Bio/NEXUS/SpanBlock.pm blib/lib/Bio/NEXUS/SpanBlock.pm cp lib/Bio/NEXUS/AssumptionsBlock.pm blib/lib/Bio/NEXUS/AssumptionsBlock.pm cp lib/Bio/NEXUS/Tools/GraphicsParams.pm blib/lib/Bio/NEXUS/Tools/GraphicsParams.pm cp lib/Bio/NEXUS/CodonsBlock.pm blib/lib/Bio/NEXUS/CodonsBlock.pm cp lib/Bio/NEXUS/TaxUnit.pm blib/lib/Bio/NEXUS/TaxUnit.pm cp lib/Bio/NEXUS/TaxaBlock.pm blib/lib/Bio/NEXUS/TaxaBlock.pm cp lib/Bio/NEXUS.pm blib/lib/Bio/NEXUS.pm cp lib/Bio/NEXUS/NotesBlock.pm blib/lib/Bio/NEXUS/NotesBlock.pm cp lib/Bio/NEXUS/WeightSet.pm blib/lib/Bio/NEXUS/WeightSet.pm cp lib/Bio/NEXUS/CharactersBlock.pm blib/lib/Bio/NEXUS/CharactersBlock.pm --- pure_all --- --- pure_all --- --- manifypods --- Manifying 3 pod documents Manifying 28 pod documents --- all --- =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> p5-Bio-NEXUS-0.78_1 depends on package: p5-Clone-PP>=1.02 - found ===> p5-Bio-NEXUS-0.78_1 depends on package: perl5>=5.42.r<5.43 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for p5-Bio-NEXUS-0.78_1 ===> Generating temporary packing list Manifying 3 pod documents Manifying 28 pod documents Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/NotesBlock.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Functions.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/CharactersBlock.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/AssumptionsBlock.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/TreesBlock.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Node.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/HistoryBlock.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/NHXCmd.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/TaxUnit.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/SetsBlock.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/CodonsBlock.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/DataBlock.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Matrix.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/SpanBlock.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/UnknownBlock.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Block.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/UnalignedBlock.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Tree.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/TaxUnitSet.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/TaxaBlock.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/WeightSet.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/DistancesBlock.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Util/Logger.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Util/Exceptions.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Tools/NexPlotter.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Tools/GraphicsParams.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/Bio/NEXUS/Tools/NexModifier.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man1/nextool.pl.1 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man1/nexplot.pl.1 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man1/nex2text_tree.pl.1 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::SetsBlock.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Functions.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::CodonsBlock.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Tools::GraphicsParams.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::UnalignedBlock.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::TaxaBlock.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::WeightSet.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::DistancesBlock.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::SpanBlock.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::NotesBlock.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Util::Logger.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Matrix.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Util::Exceptions.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::NHXCmd.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::TreesBlock.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::UnknownBlock.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Tree.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Node.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::CharactersBlock.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Tools::NexPlotter.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::TaxUnit.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::AssumptionsBlock.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::HistoryBlock.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::DataBlock.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Tools::NexModifier.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::Block.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::NEXUS::TaxUnitSet.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/bin/nextool.pl Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/bin/nex2text_tree.pl Installing /wrkdirs/usr/ports/biology/p5-Bio-NEXUS/work/stage/usr/local/bin/nexplot.pl ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-03-17T15:09:14+0000' 'PKG_NOTE_ports_top_git_hash=8c988f802ea2' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=fb16dfecae4a' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for p5-Bio-NEXUS-0.78_1 ===> Building p5-Bio-NEXUS-0.78_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for p5-Bio-NEXUS-0.78_1 build of biology/p5-Bio-NEXUS | p5-Bio-NEXUS-0.78_1 ended at Tue Mar 17 11:09:21 EDT 2026 build time: 00:00:08