=>> Building biology/p5-Bio-MAGETAB build started at Thu Mar 12 13:51:36 EDT 2026 port directory: /usr/ports/biology/p5-Bio-MAGETAB package name: p5-Bio-MAGETAB-1.31_2 building for: FreeBSD pkg.DaveG.ca 14.4-RELEASE FreeBSD 14.4-RELEASE 1404000 amd64 maintained by: perl@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1043 Aug 27 2024 /usr/ports/biology/p5-Bio-MAGETAB/Makefile Ports top last git commit: 26b198eb3ee3 Ports top unclean checkout: no Port dir last git commit: fb16dfecae4a Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1404000 Job Id: 16 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1404000 UNAME_v=FreeBSD 14.4-RELEASE 1404000 UNAME_r=14.4-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/16/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_14_4_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- perl@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- INSTALLDIRS="site" CC="cc" CCFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " LD="cc" PREFIX="/usr/local" INSTALLPRIVLIB="/usr/local/lib" INSTALLARCHLIB="/usr/local/lib" --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/.cache HOME=/wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh PERL_EXTUTILS_AUTOINSTALL="--skipdeps" PERL_MM_USE_DEFAULT="YES" --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/.cache HOME=/wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=14.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.42.0 PERL_VER=5.42 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.42 DOCSDIR="share/doc/Bio-MAGETAB" EXAMPLESDIR="share/examples/Bio-MAGETAB" DATADIR="share/Bio-MAGETAB" WWWDIR="www/Bio-MAGETAB" ETCDIR="etc/Bio-MAGETAB" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/Bio-MAGETAB DOCSDIR=/usr/local/share/doc/Bio-MAGETAB EXAMPLESDIR=/usr/local/share/examples/Bio-MAGETAB WWWDIR=/usr/local/www/Bio-MAGETAB ETCDIR=/usr/local/etc/Bio-MAGETAB --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> p5-Bio-MAGETAB-1.31_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.6.2.pkg [pkg.DaveG.ca] Installing pkg-2.6.2... [pkg.DaveG.ca] Extracting pkg-2.6.2: .......... done ===> p5-Bio-MAGETAB-1.31_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of p5-Bio-MAGETAB-1.31_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by p5-Bio-MAGETAB-1.31_2 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by p5-Bio-MAGETAB-1.31_2 for building => SHA256 Checksum OK for Bio-MAGETAB-1.31.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by p5-Bio-MAGETAB-1.31_2 for building ===> Extracting for p5-Bio-MAGETAB-1.31_2 => SHA256 Checksum OK for Bio-MAGETAB-1.31.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for p5-Bio-MAGETAB-1.31_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Date-Manip>=5.44 - not found ===> Installing existing package /packages/All/p5-Date-Manip-6.99.pkg [pkg.DaveG.ca] Installing p5-Date-Manip-6.99... [pkg.DaveG.ca] `-- Installing perl5-5.42.0_1... [pkg.DaveG.ca] `-- Extracting perl5-5.42.0_1: .......... done [pkg.DaveG.ca] Extracting p5-Date-Manip-6.99: .......... done ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Date-Manip>=5.44 - found ===> Returning to build of p5-Bio-MAGETAB-1.31_2 ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-DateTime>=0.43.02 - not found ===> Installing existing package /packages/All/p5-DateTime-1.66.pkg [pkg.DaveG.ca] Installing p5-DateTime-1.66... [pkg.DaveG.ca] `-- Installing p5-DateTime-Locale-1.45... [pkg.DaveG.ca] | `-- Installing p5-Dist-CheckConflicts-0.11_1... [pkg.DaveG.ca] | | `-- Installing p5-Module-Runtime-0.018... [pkg.DaveG.ca] | | `-- Extracting p5-Module-Runtime-0.018: ... done [pkg.DaveG.ca] | `-- Extracting p5-Dist-CheckConflicts-0.11_1: ... done [pkg.DaveG.ca] | `-- Installing p5-File-ShareDir-1.118... [pkg.DaveG.ca] | | `-- Installing p5-Class-Inspector-1.36... [pkg.DaveG.ca] | | `-- Extracting p5-Class-Inspector-1.36: ..... done [pkg.DaveG.ca] | `-- Extracting p5-File-ShareDir-1.118: ...... done [pkg.DaveG.ca] | `-- Installing p5-Params-ValidationCompiler-0.31... [pkg.DaveG.ca] | | `-- Installing p5-Eval-Closure-0.14... [pkg.DaveG.ca] | | `-- Installing p5-Try-Tiny-0.32... [pkg.DaveG.ca] | | `-- Extracting p5-Try-Tiny-0.32: ... done [pkg.DaveG.ca] | | `-- Extracting p5-Eval-Closure-0.14: ... done [pkg.DaveG.ca] | | `-- Installing p5-Exception-Class-1.45... [pkg.DaveG.ca] | | `-- Installing p5-Class-Data-Inheritable-0.10... [pkg.DaveG.ca] | | `-- Extracting p5-Class-Data-Inheritable-0.10: ... done [pkg.DaveG.ca] | | `-- Installing p5-Devel-StackTrace-2.05... [pkg.DaveG.ca] | | `-- Extracting p5-Devel-StackTrace-2.05: ..... done [pkg.DaveG.ca] | | `-- Extracting p5-Exception-Class-1.45: ..... done [pkg.DaveG.ca] | `-- Extracting p5-Params-ValidationCompiler-0.31: ....... done [pkg.DaveG.ca] | `-- Installing p5-Specio-0.53... [pkg.DaveG.ca] | | `-- Installing p5-Clone-0.47... [pkg.DaveG.ca] | | `-- Extracting p5-Clone-0.47: ..... done [pkg.DaveG.ca] | | `-- Installing p5-Clone-PP-1.08... [pkg.DaveG.ca] | | `-- Extracting p5-Clone-PP-1.08: ... done [pkg.DaveG.ca] | | `-- Installing p5-MRO-Compat-0.15... [pkg.DaveG.ca] | | `-- Installing p5-Class-C3-0.35... [pkg.DaveG.ca] | | | `-- Installing p5-Algorithm-C3-0.11... [pkg.DaveG.ca] | | | `-- Extracting p5-Algorithm-C3-0.11: ... done [pkg.DaveG.ca] | | `-- Extracting p5-Class-C3-0.35: ..... done [pkg.DaveG.ca] | | `-- Extracting p5-MRO-Compat-0.15: ... done [pkg.DaveG.ca] | | `-- Installing p5-Module-Implementation-0.09_1... [pkg.DaveG.ca] | | `-- Extracting p5-Module-Implementation-0.09_1: ... done [pkg.DaveG.ca] | | `-- Installing p5-Role-Tiny-2.002004... [pkg.DaveG.ca] | | `-- Installing p5-Class-Method-Modifiers-2.15... [pkg.DaveG.ca] | | `-- Extracting p5-Class-Method-Modifiers-2.15: ... done [pkg.DaveG.ca] | | `-- Extracting p5-Role-Tiny-2.002004: ..... done [pkg.DaveG.ca] | | `-- Installing p5-Sub-Quote-2.006009... [pkg.DaveG.ca] | | `-- Installing p5-XString-0.005... [pkg.DaveG.ca] | | `-- Extracting p5-XString-0.005: .... done [pkg.DaveG.ca] | | `-- Extracting p5-Sub-Quote-2.006009: ..... done [pkg.DaveG.ca] | `-- Extracting p5-Specio-0.53: .......... done [pkg.DaveG.ca] | `-- Installing p5-namespace-autoclean-0.31... [pkg.DaveG.ca] | | `-- Installing p5-B-Hooks-EndOfScope-0.28... [pkg.DaveG.ca] | | `-- Installing p5-Sub-Exporter-Progressive-0.001013... [pkg.DaveG.ca] | | | `-- Installing p5-Sub-Exporter-0.991... [pkg.DaveG.ca] | | | `-- Installing p5-Data-OptList-0.114... [pkg.DaveG.ca] | | | | `-- Installing p5-Params-Util-1.102... [pkg.DaveG.ca] | | | | `-- Extracting p5-Params-Util-1.102: ...... done [pkg.DaveG.ca] | | | | `-- Installing p5-Sub-Install-0.929... [pkg.DaveG.ca] | | | | `-- Extracting p5-Sub-Install-0.929: ... done [pkg.DaveG.ca] | | | `-- Extracting p5-Data-OptList-0.114: ... done [pkg.DaveG.ca] | | | `-- Extracting p5-Sub-Exporter-0.991: ......... done [pkg.DaveG.ca] | | `-- Extracting p5-Sub-Exporter-Progressive-0.001013: ... done [pkg.DaveG.ca] | | `-- Installing p5-Variable-Magic-0.64... [pkg.DaveG.ca] | | `-- Extracting p5-Variable-Magic-0.64: .... done [pkg.DaveG.ca] | | `-- Extracting p5-B-Hooks-EndOfScope-0.28: ......... done [pkg.DaveG.ca] | | `-- Installing p5-Sub-Identify-0.14... [pkg.DaveG.ca] | | `-- Extracting p5-Sub-Identify-0.14: .... done [pkg.DaveG.ca] | | `-- Installing p5-namespace-clean-0.27... [pkg.DaveG.ca] | | `-- Installing p5-Package-Stash-0.40... [pkg.DaveG.ca] | | | `-- Installing p5-Package-Stash-XS-0.30... [pkg.DaveG.ca] | | | `-- Extracting p5-Package-Stash-XS-0.30: .... done [pkg.DaveG.ca] | | `-- Extracting p5-Package-Stash-0.40: ....... done [pkg.DaveG.ca] | | `-- Extracting p5-namespace-clean-0.27: .... done [pkg.DaveG.ca] | `-- Extracting p5-namespace-autoclean-0.31: ... done [pkg.DaveG.ca] `-- Extracting p5-DateTime-Locale-1.45: .......... done [pkg.DaveG.ca] `-- Installing p5-DateTime-TimeZone-2.65,1... [pkg.DaveG.ca] | `-- Installing p5-Class-Singleton-1.6... [pkg.DaveG.ca] | `-- Extracting p5-Class-Singleton-1.6: ... done [pkg.DaveG.ca] `-- Extracting p5-DateTime-TimeZone-2.65,1: .......... done [pkg.DaveG.ca] `-- Installing p5-Params-Validate-1.31... [pkg.DaveG.ca] `-- Extracting p5-Params-Validate-1.31: ......... done [pkg.DaveG.ca] Extracting p5-DateTime-1.66: .......... done ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-DateTime>=0.43.02 - found ===> Returning to build of p5-Bio-MAGETAB-1.31_2 ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-DateTime-Format-DateManip>=0.04 - not found ===> Installing existing package /packages/All/p5-DateTime-Format-DateManip-0.04_1.pkg [pkg.DaveG.ca] Installing p5-DateTime-Format-DateManip-0.04_1... [pkg.DaveG.ca] Extracting p5-DateTime-Format-DateManip-0.04_1: ... done ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-DateTime-Format-DateManip>=0.04 - found ===> Returning to build of p5-Bio-MAGETAB-1.31_2 ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Email-Valid>=0.179 - not found ===> Installing existing package /packages/All/p5-Email-Valid-1.204.pkg [pkg.DaveG.ca] Installing p5-Email-Valid-1.204... [pkg.DaveG.ca] `-- Installing p5-Mail-Tools-2.22... [pkg.DaveG.ca] | `-- Installing p5-TimeDate-2.33,1... [pkg.DaveG.ca] | `-- Extracting p5-TimeDate-2.33,1: .......... done [pkg.DaveG.ca] `-- Extracting p5-Mail-Tools-2.22: .......... done [pkg.DaveG.ca] `-- Installing p5-Net-DNS-1.53,1... [pkg.DaveG.ca] | `-- Installing p5-Digest-HMAC-1.05... [pkg.DaveG.ca] | `-- Extracting p5-Digest-HMAC-1.05: ....... done [pkg.DaveG.ca] `-- Extracting p5-Net-DNS-1.53,1: .......... done [pkg.DaveG.ca] `-- Installing p5-Net-Domain-TLD-1.75... [pkg.DaveG.ca] `-- Extracting p5-Net-Domain-TLD-1.75: ... done [pkg.DaveG.ca] Extracting p5-Email-Valid-1.204: ... done ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Email-Valid>=0.179 - found ===> Returning to build of p5-Bio-MAGETAB-1.31_2 ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Moose>=0.43 - not found ===> Installing existing package /packages/All/p5-Moose-2.4000,1.pkg [pkg.DaveG.ca] Installing p5-Moose-2.4000,1... [pkg.DaveG.ca] `-- Installing p5-Class-Load-0.25... [pkg.DaveG.ca] `-- Extracting p5-Class-Load-0.25: .... done [pkg.DaveG.ca] `-- Installing p5-Class-Load-XS-0.10... [pkg.DaveG.ca] `-- Extracting p5-Class-Load-XS-0.10: .... done [pkg.DaveG.ca] `-- Installing p5-Devel-GlobalDestruction-0.14... [pkg.DaveG.ca] `-- Extracting p5-Devel-GlobalDestruction-0.14: ... done [pkg.DaveG.ca] `-- Installing p5-Devel-OverloadInfo-0.008... [pkg.DaveG.ca] `-- Extracting p5-Devel-OverloadInfo-0.008: ... done [pkg.DaveG.ca] `-- Installing p5-Module-Runtime-Conflicts-0.003_1... [pkg.DaveG.ca] `-- Extracting p5-Module-Runtime-Conflicts-0.003_1: ... done [pkg.DaveG.ca] `-- Installing p5-Package-DeprecationManager-0.18... [pkg.DaveG.ca] `-- Extracting p5-Package-DeprecationManager-0.18: ... done [pkg.DaveG.ca] `-- Installing p5-Scalar-List-Utils-1.70,1... [pkg.DaveG.ca] `-- Extracting p5-Scalar-List-Utils-1.70,1: .......... done [pkg.DaveG.ca] Extracting p5-Moose-2.4000,1: .......... done ===== Message from p5-Moose-2.4000,1: -- Note that this release of p5-Moose is incompatible with older versions of the following modules: Catalyst <= 5.80017 Devel::REPL <= 1.003008 Fey::ORM <= 0.23 File::ChangeNotify <= 0.15 KiokuDB <= 0.41 MooseX::Aliases <= 0.07 MooseX::AttributeHelpers <= 0.22 MooseX::AttributeInflate <= 0.02 MooseX::Attribute::Prototype <= 0.10 MooseX::ClassAttribute <= 0.13 MooseX::FollowPBP <= 0.02 MooseX::HasDefaults <= 0.02 MooseX::InstanceTracking <= 0.04 MooseX::LazyRequire <= 0.05 MooseX::MethodAttributes <= 0.22 MooseX::NonMoose <= 0.13 MooseX::Params::Validate <= 0.05 MooseX::Role::Cmd <= 0.06 MooseX::Role::WithOverloading <= 0.07 MooseX::SemiAffordanceAccessor <= 0.05 MooseX::Singleton <= 0.22 MooseX::StrictConstructor <= 0.08 MooseX::Types <= 0.19 MooseX::UndefTolerant <= 0.04 namespace::autoclean <= 0.08 Pod::Elemental <= 0.093280 They will need to be updated. ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Moose>=0.43 - found ===> Returning to build of p5-Bio-MAGETAB-1.31_2 ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-MooseX-FollowPBP>=0.04 - not found ===> Installing existing package /packages/All/p5-MooseX-FollowPBP-0.05_1.pkg [pkg.DaveG.ca] Installing p5-MooseX-FollowPBP-0.05_1... [pkg.DaveG.ca] Extracting p5-MooseX-FollowPBP-0.05_1: ..... done ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-MooseX-FollowPBP>=0.04 - found ===> Returning to build of p5-Bio-MAGETAB-1.31_2 ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-MooseX-Types>=0.10 - not found ===> Installing existing package /packages/All/p5-MooseX-Types-0.51.pkg [pkg.DaveG.ca] Installing p5-MooseX-Types-0.51... [pkg.DaveG.ca] `-- Installing p5-Carp-Clan-6.08... [pkg.DaveG.ca] `-- Extracting p5-Carp-Clan-6.08: ... done [pkg.DaveG.ca] `-- Installing p5-Sub-Exporter-ForMethods-0.100055... [pkg.DaveG.ca] `-- Extracting p5-Sub-Exporter-ForMethods-0.100055: ... done [pkg.DaveG.ca] Extracting p5-MooseX-Types-0.51: .......... done ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-MooseX-Types>=0.10 - found ===> Returning to build of p5-Bio-MAGETAB-1.31_2 ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Params-Coerce>=0.14 - not found ===> Installing existing package /packages/All/p5-Params-Coerce-0.15.pkg [pkg.DaveG.ca] Installing p5-Params-Coerce-0.15... [pkg.DaveG.ca] Extracting p5-Params-Coerce-0.15: ... done ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Params-Coerce>=0.14 - found ===> Returning to build of p5-Bio-MAGETAB-1.31_2 ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Parse-RecDescent>=1.965001 - not found ===> Installing existing package /packages/All/p5-Parse-RecDescent-1.967015.pkg [pkg.DaveG.ca] Installing p5-Parse-RecDescent-1.967015... [pkg.DaveG.ca] Extracting p5-Parse-RecDescent-1.967015: ........ done ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Parse-RecDescent>=1.965001 - found ===> Returning to build of p5-Bio-MAGETAB-1.31_2 ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Text-CSV_XS>=0.32 - not found ===> Installing existing package /packages/All/p5-Text-CSV_XS-1.61.pkg [pkg.DaveG.ca] Installing p5-Text-CSV_XS-1.61... [pkg.DaveG.ca] Extracting p5-Text-CSV_XS-1.61: .... done ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Text-CSV_XS>=0.32 - found ===> Returning to build of p5-Bio-MAGETAB-1.31_2 ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-URI>=1.35 - not found ===> Installing existing package /packages/All/p5-URI-5.34.pkg [pkg.DaveG.ca] Installing p5-URI-5.34... [pkg.DaveG.ca] `-- Installing p5-MIME-Base32-1.303... [pkg.DaveG.ca] `-- Extracting p5-MIME-Base32-1.303: ... done [pkg.DaveG.ca] `-- Installing p5-MIME-Base64-3.16... [pkg.DaveG.ca] `-- Extracting p5-MIME-Base64-3.16: ...... done [pkg.DaveG.ca] Extracting p5-URI-5.34: .......... done ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-URI>=1.35 - found ===> Returning to build of p5-Bio-MAGETAB-1.31_2 ===> p5-Bio-MAGETAB-1.31_2 depends on package: perl5>=5.42.r<5.43 - found ===> p5-Bio-MAGETAB-1.31_2 depends on package: perl5>=5.42.r<5.43 - found ===> p5-Bio-MAGETAB-1.31_2 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> p5-Bio-MAGETAB-1.31_2 depends on file: /usr/local/bin/ccache - found ===> Returning to build of p5-Bio-MAGETAB-1.31_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for p5-Bio-MAGETAB-1.31_2 Warning: prerequisite DateTime::Format::Flexible 0.21 not found. Warning: prerequisite Test::Exception 0.26 not found. Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::MAGETAB Writing MYMETA.yml and MYMETA.json =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for p5-Bio-MAGETAB-1.31_2 --- blib/lib/Bio/.exists --- --- blib/arch/.exists --- --- blib/lib/auto/Bio/MAGETAB/.exists --- --- blib/arch/auto/Bio/MAGETAB/.exists --- --- blib/bin/.exists --- --- blib/script/.exists --- --- blib/man1/.exists --- --- blib/man3/.exists --- --- config --- --- subdirs --- --- dynamic --- --- pm_to_blib --- --- blib/script/deploy_magetab_db.pl --- --- blib/script/fix_ae_magetab.pl --- --- blib/script/read_magetab.pl --- --- blib/script/unload_magetab_namespace.pl --- --- blib/script/deploy_magetab_db.pl --- cp scripts/deploy_magetab_db.pl blib/script/deploy_magetab_db.pl --- blib/script/fix_ae_magetab.pl --- cp scripts/fix_ae_magetab.pl blib/script/fix_ae_magetab.pl --- blib/script/deploy_magetab_db.pl --- "/usr/local/bin/perl" "-Iinc" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/deploy_magetab_db.pl --- blibdirs --- --- blib/script/read_magetab.pl --- cp scripts/read_magetab.pl blib/script/read_magetab.pl --- blib/script/fix_ae_magetab.pl --- "/usr/local/bin/perl" "-Iinc" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/fix_ae_magetab.pl --- blib/script/unload_magetab_namespace.pl --- cp scripts/unload_magetab_namespace.pl blib/script/unload_magetab_namespace.pl --- blib/script/read_magetab.pl --- "/usr/local/bin/perl" "-Iinc" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/read_magetab.pl --- blib/script/unload_magetab_namespace.pl --- "/usr/local/bin/perl" "-Iinc" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/unload_magetab_namespace.pl --- config --- --- dynamic --- --- linkext --- --- pm_to_blib --- cp lib/Bio/MAGETAB/Edge.pm blib/lib/Bio/MAGETAB/Edge.pm cp lib/Bio/MAGETAB/DatabaseEntry.pm blib/lib/Bio/MAGETAB/DatabaseEntry.pm cp lib/Bio/MAGETAB/CompositeElement.pm blib/lib/Bio/MAGETAB/CompositeElement.pm cp lib/Bio/MAGETAB/Util/Reader/IDF.pm blib/lib/Bio/MAGETAB/Util/Reader/IDF.pm cp lib/Bio/MAGETAB/Util/Builder.pm blib/lib/Bio/MAGETAB/Util/Builder.pm cp lib/Bio/MAGETAB/Util/Writer/ADF.pm blib/lib/Bio/MAGETAB/Util/Writer/ADF.pm cp lib/Bio/MAGETAB/Util/Reader.pm blib/lib/Bio/MAGETAB/Util/Reader.pm cp lib/Bio/MAGETAB/ControlledTerm.pm blib/lib/Bio/MAGETAB/ControlledTerm.pm cp lib/Bio/MAGETAB/Util/DBLoader.pm blib/lib/Bio/MAGETAB/Util/DBLoader.pm cp lib/Bio/MAGETAB/Util/Writer/Tabfile.pm blib/lib/Bio/MAGETAB/Util/Writer/Tabfile.pm cp lib/Bio/MAGETAB/ParameterValue.pm blib/lib/Bio/MAGETAB/ParameterValue.pm cp lib/Bio/MAGETAB/Util/Reader/ADF.pm blib/lib/Bio/MAGETAB/Util/Reader/ADF.pm cp lib/Bio/MAGETAB/Data.pm blib/lib/Bio/MAGETAB/Data.pm cp lib/Bio/MAGETAB/FactorValue.pm blib/lib/Bio/MAGETAB/FactorValue.pm cp lib/Bio/MAGETAB/DesignElement.pm blib/lib/Bio/MAGETAB/DesignElement.pm cp lib/Bio/MAGETAB/Sample.pm blib/lib/Bio/MAGETAB/Sample.pm cp lib/Bio/MAGETAB/LabeledExtract.pm blib/lib/Bio/MAGETAB/LabeledExtract.pm cp lib/Bio/MAGETAB/TermSource.pm blib/lib/Bio/MAGETAB/TermSource.pm cp lib/Bio/MAGETAB/MatrixColumn.pm blib/lib/Bio/MAGETAB/MatrixColumn.pm cp lib/Bio/MAGETAB/Contact.pm blib/lib/Bio/MAGETAB/Contact.pm cp lib/Bio/MAGETAB/Source.pm blib/lib/Bio/MAGETAB/Source.pm cp lib/Bio/MAGETAB/DataMatrix.pm blib/lib/Bio/MAGETAB/DataMatrix.pm cp lib/Bio/MAGETAB/DataAcquisition.pm blib/lib/Bio/MAGETAB/DataAcquisition.pm cp lib/Bio/MAGETAB/Util/RewriteAE.pm blib/lib/Bio/MAGETAB/Util/RewriteAE.pm cp lib/Bio/MAGETAB/Node.pm blib/lib/Bio/MAGETAB/Node.pm cp lib/Bio/MAGETAB/Factor.pm blib/lib/Bio/MAGETAB/Factor.pm cp lib/Bio/MAGETAB/Event.pm blib/lib/Bio/MAGETAB/Event.pm cp lib/Bio/MAGETAB/ProtocolParameter.pm blib/lib/Bio/MAGETAB/ProtocolParameter.pm cp lib/Bio/MAGETAB/Types.pm blib/lib/Bio/MAGETAB/Types.pm cp lib/Bio/MAGETAB.pm blib/lib/Bio/MAGETAB.pm cp lib/Bio/MAGETAB/SDRFRow.pm blib/lib/Bio/MAGETAB/SDRFRow.pm cp lib/Bio/MAGETAB/Util/Reader/DataMatrix.pm blib/lib/Bio/MAGETAB/Util/Reader/DataMatrix.pm cp lib/Bio/MAGETAB/Measurement.pm blib/lib/Bio/MAGETAB/Measurement.pm cp lib/Bio/MAGETAB/Reporter.pm blib/lib/Bio/MAGETAB/Reporter.pm cp lib/Bio/MAGETAB/Util/Writer/GraphViz.pm blib/lib/Bio/MAGETAB/Util/Writer/GraphViz.pm cp lib/Bio/MAGETAB/Util/Writer/IDF.pm blib/lib/Bio/MAGETAB/Util/Writer/IDF.pm cp lib/Bio/MAGETAB/Publication.pm blib/lib/Bio/MAGETAB/Publication.pm cp lib/Bio/MAGETAB/Investigation.pm blib/lib/Bio/MAGETAB/Investigation.pm cp lib/Bio/MAGETAB/Util/Writer/SDRF.pm blib/lib/Bio/MAGETAB/Util/Writer/SDRF.pm cp lib/Bio/MAGETAB/Assay.pm blib/lib/Bio/MAGETAB/Assay.pm cp lib/Bio/MAGETAB/Util/Reader/Tabfile.pm blib/lib/Bio/MAGETAB/Util/Reader/Tabfile.pm cp lib/Bio/MAGETAB/Material.pm blib/lib/Bio/MAGETAB/Material.pm cp lib/Bio/MAGETAB/Util/Reader/TagValueFile.pm blib/lib/Bio/MAGETAB/Util/Reader/TagValueFile.pm cp lib/Bio/MAGETAB/BaseClass.pm blib/lib/Bio/MAGETAB/BaseClass.pm cp lib/Bio/MAGETAB/Util/Reader/SDRF.pm blib/lib/Bio/MAGETAB/Util/Reader/SDRF.pm cp lib/Bio/MAGETAB/Util/Persistence.pm blib/lib/Bio/MAGETAB/Util/Persistence.pm cp lib/Bio/MAGETAB/MatrixRow.pm blib/lib/Bio/MAGETAB/MatrixRow.pm cp lib/Bio/MAGETAB/Comment.pm blib/lib/Bio/MAGETAB/Comment.pm cp lib/Bio/MAGETAB/Feature.pm blib/lib/Bio/MAGETAB/Feature.pm cp lib/Bio/MAGETAB/Normalization.pm blib/lib/Bio/MAGETAB/Normalization.pm cp lib/Bio/MAGETAB/Protocol.pm blib/lib/Bio/MAGETAB/Protocol.pm cp lib/Bio/MAGETAB/Util/Writer.pm blib/lib/Bio/MAGETAB/Util/Writer.pm cp lib/Bio/MAGETAB/DataFile.pm blib/lib/Bio/MAGETAB/DataFile.pm cp lib/Bio/MAGETAB/ProtocolApplication.pm blib/lib/Bio/MAGETAB/ProtocolApplication.pm cp lib/Bio/MAGETAB/ArrayDesign.pm blib/lib/Bio/MAGETAB/ArrayDesign.pm cp lib/Bio/MAGETAB/SDRF.pm blib/lib/Bio/MAGETAB/SDRF.pm cp lib/Bio/MAGETAB/Extract.pm blib/lib/Bio/MAGETAB/Extract.pm --- pure_all --- --- pure_all --- --- manifypods --- Manifying 57 pod documents --- all --- =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Date-Manip>=5.44 - found ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-DateTime>=0.43.02 - found ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-DateTime-Format-DateManip>=0.04 - found ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Email-Valid>=0.179 - found ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Moose>=0.43 - found ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-MooseX-FollowPBP>=0.04 - found ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-MooseX-Types>=0.10 - found ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Params-Coerce>=0.14 - found ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Parse-RecDescent>=1.965001 - found ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-Text-CSV_XS>=0.32 - found ===> p5-Bio-MAGETAB-1.31_2 depends on package: p5-URI>=1.35 - found ===> p5-Bio-MAGETAB-1.31_2 depends on package: perl5>=5.42.r<5.43 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for p5-Bio-MAGETAB-1.31_2 ===> Generating temporary packing list Manifying 57 pod documents Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Sample.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/DataMatrix.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/SDRFRow.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Publication.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Assay.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Factor.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Comment.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/DataFile.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Event.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Normalization.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Measurement.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/BaseClass.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Source.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/TermSource.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/ControlledTerm.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/SDRF.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Node.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/DesignElement.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Data.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Protocol.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/CompositeElement.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/MatrixColumn.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Investigation.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/MatrixRow.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Contact.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Types.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Extract.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Feature.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Reporter.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/LabeledExtract.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/FactorValue.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Edge.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/ProtocolParameter.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Material.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/ArrayDesign.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/DataAcquisition.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/ProtocolApplication.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/ParameterValue.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/DatabaseEntry.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Util/Persistence.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Util/Builder.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Util/Writer.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Util/DBLoader.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Util/Reader.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Util/RewriteAE.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Util/Reader/Tabfile.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Util/Reader/IDF.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Util/Reader/DataMatrix.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Util/Reader/SDRF.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Util/Reader/ADF.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Util/Reader/TagValueFile.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Util/Writer/Tabfile.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Util/Writer/IDF.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Util/Writer/SDRF.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Util/Writer/ADF.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/Bio/MAGETAB/Util/Writer/GraphViz.pm Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Contact.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Protocol.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::ControlledTerm.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::ProtocolParameter.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::ProtocolApplication.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Node.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Reporter.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::LabeledExtract.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Normalization.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::DatabaseEntry.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Sample.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Factor.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Feature.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Edge.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Writer::IDF.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Reader::IDF.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::TermSource.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::DBLoader.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Publication.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Reader::SDRF.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::ParameterValue.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::SDRF.3 Installing 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/wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Types.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::SDRFRow.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::DataMatrix.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Builder.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Material.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::RewriteAE.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Reader.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::BaseClass.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Source.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::DataAcquisition.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Measurement.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Persistence.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::MatrixColumn.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Comment.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Writer.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Extract.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Reader::Tabfile.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Investigation.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::DesignElement.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Writer::Tabfile.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Assay.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::CompositeElement.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::MatrixRow.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Reader::ADF.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Writer::ADF.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Reader::TagValueFile.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/lib/perl5/site_perl/man/man3/Bio::MAGETAB::Util::Writer::SDRF.3 Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/bin/read_magetab.pl Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/bin/deploy_magetab_db.pl Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/bin/unload_magetab_namespace.pl Installing /wrkdirs/usr/ports/biology/p5-Bio-MAGETAB/work/stage/usr/local/bin/fix_ae_magetab.pl ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-03-12T17:51:36+0000' 'PKG_NOTE_ports_top_git_hash=26b198eb3ee3' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=fb16dfecae4a' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for p5-Bio-MAGETAB-1.31_2 ===> Building p5-Bio-MAGETAB-1.31_2 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for p5-Bio-MAGETAB-1.31_2 build of biology/p5-Bio-MAGETAB | p5-Bio-MAGETAB-1.31_2 ended at Thu Mar 12 13:51:44 EDT 2026 build time: 00:00:09