=>> Building biology/ncbi-entrez-direct build started at Tue Mar 10 21:41:46 EDT 2026 port directory: /usr/ports/biology/ncbi-entrez-direct package name: ncbi-entrez-direct-14.9.20210423_39 building for: FreeBSD pkg.DaveG.ca 14.4-RELEASE FreeBSD 14.4-RELEASE 1404000 amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 3242 Mar 6 20:23 /usr/ports/biology/ncbi-entrez-direct/Makefile Ports top last git commit: 26b198eb3ee3 Ports top unclean checkout: no Port dir last git commit: a8d318da7c15 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1404000 Job Id: 02 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1404000 UNAME_v=FreeBSD 14.4-RELEASE 1404000 UNAME_r=14.4-RELEASE BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_14_4_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_14_4_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=14.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.42.0 PERL_VER=5.42 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.42 DOCSDIR="share/doc/ncbi-entrez-direct" EXAMPLESDIR="share/examples/ncbi-entrez-direct" DATADIR="share/ncbi-entrez-direct" WWWDIR="www/ncbi-entrez-direct" ETCDIR="etc/ncbi-entrez-direct" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-entrez-direct DOCSDIR=/usr/local/share/doc/ncbi-entrez-direct EXAMPLESDIR=/usr/local/share/examples/ncbi-entrez-direct WWWDIR=/usr/local/www/ncbi-entrez-direct ETCDIR=/usr/local/etc/ncbi-entrez-direct --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-entrez-direct-14.9.20210423_39 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.6.2.pkg [pkg.DaveG.ca] Installing pkg-2.6.2... [pkg.DaveG.ca] Extracting pkg-2.6.2: .......... done ===> ncbi-entrez-direct-14.9.20210423_39 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_39 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by ncbi-entrez-direct-14.9.20210423_39 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by ncbi-entrez-direct-14.9.20210423_39 for building => SHA256 Checksum OK for edirect-14.9.20210423/edirect.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/fatih-color-v1.10.0_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/surgebase-porter2-56e4718818e8_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/gedex-inflector-16278e9db813_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/klauspost-cpuid-v1.3.1_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/pbnjay-memory-b12e5d931931_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/mattn-go-colorable-v0.1.8_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/mattn-go-isatty-v0.0.12_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/fiam-gounidecode-8deddbd03fec_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/golang-text-v0.3.5_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/golang-sys-v0.5.0_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by ncbi-entrez-direct-14.9.20210423_39 for building ===> Extracting for ncbi-entrez-direct-14.9.20210423_39 => SHA256 Checksum OK for edirect-14.9.20210423/edirect.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/fatih-color-v1.10.0_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/surgebase-porter2-56e4718818e8_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/gedex-inflector-16278e9db813_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/klauspost-cpuid-v1.3.1_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/pbnjay-memory-b12e5d931931_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/mattn-go-colorable-v0.1.8_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/mattn-go-isatty-v0.0.12_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/fiam-gounidecode-8deddbd03fec_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/golang-text-v0.3.5_GH0.tar.gz. => SHA256 Checksum OK for edirect-14.9.20210423/golang-sys-v0.5.0_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for ncbi-entrez-direct-14.9.20210423_39 ===> Applying FreeBSD patches for ncbi-entrez-direct-14.9.20210423_39 from /usr/ports/biology/ncbi-entrez-direct/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-entrez-direct-14.9.20210423_39 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.3.9.pkg [pkg.DaveG.ca] Installing bash-5.3.9... [pkg.DaveG.ca] `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] Extracting bash-5.3.9: .......... done ===== Message from bash-5.3.9: -- bash requires fdescfs(5) mounted on /dev/fd If you have not done it yet, please do the following: mount -t fdescfs fdescfs /dev/fd To make it permanent, you need the following lines in /etc/fstab: fdescfs /dev/fd fdescfs rw,late 0 0 ===> ncbi-entrez-direct-14.9.20210423_39 depends on executable: bash - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_39 ===> ncbi-entrez-direct-14.9.20210423_39 depends on file: /usr/local/bin/go125 - not found ===> Installing existing package /packages/All/go125-1.25.8.pkg [pkg.DaveG.ca] Installing go125-1.25.8... [pkg.DaveG.ca] Extracting go125-1.25.8: .......... done ===> ncbi-entrez-direct-14.9.20210423_39 depends on file: /usr/local/bin/go125 - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_39 ===> ncbi-entrez-direct-14.9.20210423_39 depends on package: perl5>=5.42.r<5.43 - not found ===> Installing existing package /packages/All/perl5-5.42.0_1.pkg [pkg.DaveG.ca] Installing perl5-5.42.0_1... [pkg.DaveG.ca] Extracting perl5-5.42.0_1: .......... done ===> ncbi-entrez-direct-14.9.20210423_39 depends on package: perl5>=5.42.r<5.43 - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_39 ===> ncbi-entrez-direct-14.9.20210423_39 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> ncbi-entrez-direct-14.9.20210423_39 depends on file: /usr/local/bin/ccache - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_39 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for ncbi-entrez-direct-14.9.20210423_39 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for ncbi-entrez-direct-14.9.20210423_39 + uname -s + platform=FreeBSD + pwd + export 'HOME=/wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/ncbi-entrez-direct-14.9.20210423/cmd' + go build -o xtract.FreeBSD xtract.go + go build -o transmute.FreeBSD transmute.go + go build -o rchive.FreeBSD rchive.go =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-entrez-direct-14.9.20210423_39 depends on package: p5-libwww>=0 - not found ===> Installing existing package /packages/All/p5-libwww-6.81.pkg [pkg.DaveG.ca] Installing p5-libwww-6.81... [pkg.DaveG.ca] `-- Installing p5-Authen-NTLM-1.09_1... [pkg.DaveG.ca] | `-- Installing p5-Digest-HMAC-1.05... [pkg.DaveG.ca] | `-- Extracting p5-Digest-HMAC-1.05: ....... done [pkg.DaveG.ca] `-- Extracting p5-Authen-NTLM-1.09_1: ..... done [pkg.DaveG.ca] `-- Installing p5-Encode-Locale-1.05... [pkg.DaveG.ca] `-- Extracting p5-Encode-Locale-1.05: ... done [pkg.DaveG.ca] `-- Installing p5-File-Listing-6.16... [pkg.DaveG.ca] | `-- Installing p5-HTTP-Date-6.06... [pkg.DaveG.ca] | | `-- Installing p5-TimeDate-2.33,1... [pkg.DaveG.ca] | | `-- Extracting p5-TimeDate-2.33,1: .......... done [pkg.DaveG.ca] | `-- Extracting p5-HTTP-Date-6.06: ... done [pkg.DaveG.ca] `-- Extracting p5-File-Listing-6.16: ... done [pkg.DaveG.ca] `-- Installing p5-HTML-Parser-3.83... [pkg.DaveG.ca] | `-- Installing p5-HTML-Tagset-3.24... [pkg.DaveG.ca] | `-- Extracting p5-HTML-Tagset-3.24: ... done [pkg.DaveG.ca] | `-- Installing p5-HTTP-Message-7.01... [pkg.DaveG.ca] | | `-- Installing p5-Clone-0.47... [pkg.DaveG.ca] | | `-- Extracting p5-Clone-0.47: ..... done [pkg.DaveG.ca] | | `-- Installing p5-IO-HTML-1.004... [pkg.DaveG.ca] | | `-- Extracting p5-IO-HTML-1.004: ... done [pkg.DaveG.ca] | | `-- Installing p5-LWP-MediaTypes-6.04... [pkg.DaveG.ca] | | `-- Extracting p5-LWP-MediaTypes-6.04: .... done [pkg.DaveG.ca] | | `-- Installing p5-URI-5.34... [pkg.DaveG.ca] | | `-- Installing p5-MIME-Base32-1.303... [pkg.DaveG.ca] | | `-- Extracting p5-MIME-Base32-1.303: ... done [pkg.DaveG.ca] | | `-- Installing p5-MIME-Base64-3.16... [pkg.DaveG.ca] | | `-- Extracting p5-MIME-Base64-3.16: ...... done [pkg.DaveG.ca] | | `-- Extracting p5-URI-5.34: .......... done [pkg.DaveG.ca] | `-- Extracting p5-HTTP-Message-7.01: .......... done [pkg.DaveG.ca] `-- Extracting p5-HTML-Parser-3.83: .......... done [pkg.DaveG.ca] `-- Installing p5-HTTP-Cookies-6.11... [pkg.DaveG.ca] `-- Extracting p5-HTTP-Cookies-6.11: ....... done [pkg.DaveG.ca] `-- Installing p5-HTTP-Negotiate-6.01_1... [pkg.DaveG.ca] `-- Extracting p5-HTTP-Negotiate-6.01_1: ... done [pkg.DaveG.ca] `-- Installing p5-Net-HTTP-6.24... [pkg.DaveG.ca] | `-- Installing p5-IO-Socket-SSL-2.095... [pkg.DaveG.ca] | | `-- Installing p5-Mozilla-CA-20250602... [pkg.DaveG.ca] | | `-- Extracting p5-Mozilla-CA-20250602: .... done [pkg.DaveG.ca] | | `-- Installing p5-Net-SSLeay-1.94... [pkg.DaveG.ca] | | `-- Extracting p5-Net-SSLeay-1.94: .......... done [pkg.DaveG.ca] | `-- Extracting p5-IO-Socket-SSL-2.095: .......... done [pkg.DaveG.ca] `-- Extracting p5-Net-HTTP-6.24: ......... done [pkg.DaveG.ca] `-- Installing p5-Try-Tiny-0.32... [pkg.DaveG.ca] `-- Extracting p5-Try-Tiny-0.32: ... done [pkg.DaveG.ca] `-- Installing p5-WWW-RobotRules-6.02_1... [pkg.DaveG.ca] `-- Extracting p5-WWW-RobotRules-6.02_1: ..... done [pkg.DaveG.ca] Extracting p5-libwww-6.81: .......... done ===> ncbi-entrez-direct-14.9.20210423_39 depends on package: p5-libwww>=0 - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_39 ===> ncbi-entrez-direct-14.9.20210423_39 depends on package: p5-LWP-Protocol-https>=0 - not found ===> Installing existing package /packages/All/p5-LWP-Protocol-https-6.14.pkg [pkg.DaveG.ca] Installing p5-LWP-Protocol-https-6.14... [pkg.DaveG.ca] Extracting p5-LWP-Protocol-https-6.14: ... done ===> ncbi-entrez-direct-14.9.20210423_39 depends on package: p5-LWP-Protocol-https>=0 - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_39 ===> ncbi-entrez-direct-14.9.20210423_39 depends on package: p5-XML-Simple>=0 - not found ===> Installing existing package /packages/All/p5-XML-Simple-2.25.pkg [pkg.DaveG.ca] Installing p5-XML-Simple-2.25... [pkg.DaveG.ca] `-- Installing p5-XML-Parser-2.47... [pkg.DaveG.ca] | `-- Installing expat-2.7.4... [pkg.DaveG.ca] | `-- Extracting expat-2.7.4: .......... done [pkg.DaveG.ca] `-- Extracting p5-XML-Parser-2.47: .......... done [pkg.DaveG.ca] `-- Installing p5-XML-SAX-1.02... [pkg.DaveG.ca] | `-- Installing p5-XML-NamespaceSupport-1.12... [pkg.DaveG.ca] | `-- Extracting p5-XML-NamespaceSupport-1.12: ... done [pkg.DaveG.ca] | `-- Installing p5-XML-SAX-Base-1.09... [pkg.DaveG.ca] | `-- Extracting p5-XML-SAX-Base-1.09: ....... done [pkg.DaveG.ca] `-- Extracting p5-XML-SAX-1.02: .......... done could not find ParserDetails.ini in /usr/local/lib/perl5/site_perl/XML/SAX [pkg.DaveG.ca] `-- Installing p5-XML-SAX-Expat-0.51_1... [pkg.DaveG.ca] `-- Extracting p5-XML-SAX-Expat-0.51_1: ... done [pkg.DaveG.ca] Extracting p5-XML-Simple-2.25: ..... done ===> ncbi-entrez-direct-14.9.20210423_39 depends on package: p5-XML-Simple>=0 - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_39 ===> ncbi-entrez-direct-14.9.20210423_39 depends on executable: curl - not found ===> Installing existing package /packages/All/curl-8.17.0.pkg [pkg.DaveG.ca] Installing curl-8.17.0... [pkg.DaveG.ca] `-- Installing brotli-1.2.0,1... [pkg.DaveG.ca] `-- Extracting brotli-1.2.0,1: .......... done [pkg.DaveG.ca] `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | `-- Installing libunistring-1.4.2... [pkg.DaveG.ca] | `-- Extracting libunistring-1.4.2: .......... done [pkg.DaveG.ca] `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] `-- Installing libnghttp2-1.68.0... [pkg.DaveG.ca] `-- Extracting libnghttp2-1.68.0: ....... done [pkg.DaveG.ca] `-- Installing libpsl-0.21.5_2... [pkg.DaveG.ca] `-- Extracting libpsl-0.21.5_2: ........ done [pkg.DaveG.ca] `-- Installing libssh2-1.11.1,3... [pkg.DaveG.ca] `-- Extracting libssh2-1.11.1,3: .......... done [pkg.DaveG.ca] `-- Installing zstd-1.5.7_1... [pkg.DaveG.ca] `-- Extracting zstd-1.5.7_1: .......... done [pkg.DaveG.ca] Extracting curl-8.17.0: .......... done ===> ncbi-entrez-direct-14.9.20210423_39 depends on executable: curl - found ===> Returning to build of ncbi-entrez-direct-14.9.20210423_39 ===> ncbi-entrez-direct-14.9.20210423_39 depends on package: perl5>=5.42.r<5.43 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for ncbi-entrez-direct-14.9.20210423_39 ===> Generating temporary packing list cd /wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/ncbi-entrez-direct-14.9.20210423 && install -m 555 accn-at-a-time amino-acid-composition archive-pubmed between-two-genes download-ncbi-data download-pubmed download-sequence efetch efilter einfo elink epost esample esearch esummary exclude-uid-lists expand-current fetch-pubmed filter-stop-words gbf2xml index-extras index-pubmed intersect-uid-lists join-into-groups-of nquire phrase-search pm-collect pm-index pm-invert pm-merge pm-prepare pm-promote pm-refresh pm-stash rchive reorder-columns run-ncbi-converter skip-if-file-exists ecommon.sh sort-uniq-count sort-uniq-count-rank stream-pubmed theme-aliases transmute word-at-a-time xml2tbl xtract xy-plot hlp-xtract.txt transmute xml2json xtract test-edirect align-columns hgvs2spdi sort-table print-columns /wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/stage/usr/local/bin install -m 555 /wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/ncbi-entrez-direct-14.9.20210423/edirect.pl /wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/stage/usr/local/bin install -s -m 555 /wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/ncbi-entrez-direct-14.9.20210423/cmd/*.FreeBSD /wrkdirs/usr/ports/biology/ncbi-entrez-direct/work/stage/usr/local/bin ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-03-11T01:41:46+0000' 'PKG_NOTE_ports_top_git_hash=26b198eb3ee3' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=a8d318da7c15' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for ncbi-entrez-direct-14.9.20210423_39 ===> Building ncbi-entrez-direct-14.9.20210423_39 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for ncbi-entrez-direct-14.9.20210423_39 build of biology/ncbi-entrez-direct | ncbi-entrez-direct-14.9.20210423_39 ended at Tue Mar 10 21:43:08 EDT 2026 build time: 00:01:24