=>> Building biology/megahit build started at Tue Mar 17 13:14:36 EDT 2026 port directory: /usr/ports/biology/megahit package name: megahit-1.2.9.20 building for: FreeBSD pkg.DaveG.ca 15.0-RELEASE-p3 FreeBSD 15.0-RELEASE-p3 1500068 amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 551 Jun 29 2025 /usr/ports/biology/megahit/Makefile Ports top last git commit: 8c988f802ea2 Ports top unclean checkout: no Port dir last git commit: b3b1a391c149 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1500068 Job Id: 14 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500068 UNAME_v=FreeBSD 15.0-RELEASE-p3 1500068 UNAME_r=15.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/14/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_15_0_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/megahit/work/.cache HOME=/wrkdirs/usr/ports/biology/megahit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/megahit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/megahit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/megahit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/megahit/work/.cache HOME=/wrkdirs/usr/ports/biology/megahit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/megahit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/megahit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/megahit/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/megahit" EXAMPLESDIR="share/examples/megahit" DATADIR="share/megahit" WWWDIR="www/megahit" ETCDIR="etc/megahit" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/megahit DOCSDIR=/usr/local/share/doc/megahit EXAMPLESDIR=/usr/local/share/examples/megahit WWWDIR=/usr/local/www/megahit ETCDIR=/usr/local/etc/megahit --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> megahit-1.2.9.20 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.6.2.pkg [pkg.DaveG.ca] Installing pkg-2.6.2... [pkg.DaveG.ca] Extracting pkg-2.6.2: .......... done ===> megahit-1.2.9.20 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of megahit-1.2.9.20 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by megahit-1.2.9.20 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by megahit-1.2.9.20 for building => SHA256 Checksum OK for voutcn-megahit-v1.2.9-20-g3821b10_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by megahit-1.2.9.20 for building ===> Extracting for megahit-1.2.9.20 => SHA256 Checksum OK for voutcn-megahit-v1.2.9-20-g3821b10_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for megahit-1.2.9.20 ===> Applying FreeBSD patches for megahit-1.2.9.20 from /usr/ports/biology/megahit/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> megahit-1.2.9.20 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.10_1.pkg [pkg.DaveG.ca] Installing cmake-core-3.31.10_1... [pkg.DaveG.ca] `-- Installing expat-2.7.4... [pkg.DaveG.ca] `-- Extracting expat-2.7.4: .......... done [pkg.DaveG.ca] `-- Installing jsoncpp-1.9.6_1... [pkg.DaveG.ca] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg.DaveG.ca] `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | `-- Installing libunistring-1.4.2... [pkg.DaveG.ca] | `-- Extracting libunistring-1.4.2: .......... done [pkg.DaveG.ca] `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] `-- Installing libuv-1.52.0... [pkg.DaveG.ca] `-- Extracting libuv-1.52.0: .......... done [pkg.DaveG.ca] `-- Installing rhash-1.4.6... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] `-- Extracting rhash-1.4.6: .......... done [pkg.DaveG.ca] Extracting cmake-core-3.31.10_1: .......... done ===> megahit-1.2.9.20 depends on file: /usr/local/bin/cmake - found ===> Returning to build of megahit-1.2.9.20 ===> megahit-1.2.9.20 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.13.2,4.pkg [pkg.DaveG.ca] Installing ninja-1.13.2,4... [pkg.DaveG.ca] `-- Installing python311-3.11.15... [pkg.DaveG.ca] | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | `-- Installing readline-8.3.3... [pkg.DaveG.ca] | `-- Extracting readline-8.3.3: .......... done [pkg.DaveG.ca] `-- Extracting python311-3.11.15: .......... done [pkg.DaveG.ca] Extracting ninja-1.13.2,4: ..... done ===== Message from python311-3.11.15: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> megahit-1.2.9.20 depends on executable: ninja - found ===> Returning to build of megahit-1.2.9.20 ===> megahit-1.2.9.20 depends on file: /usr/local/bin/python3.11 - found ===> megahit-1.2.9.20 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> megahit-1.2.9.20 depends on file: /usr/local/bin/ccache - found ===> Returning to build of megahit-1.2.9.20 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for megahit-1.2.9.20 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/megahit/work/.build CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is Clang 19.1.7 -- The CXX compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/libz.so (found version "1.3.1") -- Found OpenMP_C: -fopenmp=libomp (found version "5.1") -- Found OpenMP_CXX: -fopenmp=libomp (found version "5.1") -- Found OpenMP: TRUE (found version "5.1") -- Build type: Release: -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -- Configuring done (4.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: BOOST_PYTHON_SUFFIX CMAKE_COLOR_MAKEFILE CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS FETCHCONTENT_FULLY_DISCONNECTED Python3_EXECUTABLE Python_ADDITIONAL_VERSIONS Python_EXECUTABLE THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/usr/ports/biology/megahit/work/.build =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for megahit-1.2.9.20 [ 0% 64/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o -MF CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o.d -o CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/tools/read_stat.cpp [ 1% 65/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_buildlib.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_buildlib.cpp:1: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 1 warning generated. [ 2% 66/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_local_assemble.cpp [ 3% 67/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/paired_fastx_reader.cpp [ 4% 68/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_buildlib.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_buildlib.cpp:1: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 1 warning generated. [ 5% 69/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_writer.cpp [ 6% 70/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_local_assemble.cpp [ 7% 71/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o -MF CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o.d -o CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/tools/contigs_to_fastg.cpp [ 8% 72/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o -MF CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_meta.cpp [ 9% 73/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o -MF CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o.d -o CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/tools/filter_by_len.cpp [ 10% 74/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/utils/options_description.cpp /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/utils/options_description.cpp:34:30: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 34 | struct option long_options[options.size() + 1]; | ^~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/utils/options_description.cpp:34:30: note: implicit use of 'this' pointer is only allowed within the evaluation of a call to a 'constexpr' member function 1 warning generated. [ 10% 75/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/sequence.cpp [ 11% 76/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_raw_content.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_raw_content.cpp:5: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_raw_content.h:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_raw_content.cpp:39:10: warning: variable 'file_offset' set but not used [-Wunused-but-set-variable] 39 | size_t file_offset = 0; | ^ 5 warnings generated. [ 12% 77/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/paired_fastx_reader.cpp [ 13% 78/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o -MF CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o.d -o CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/utils/options_description.cpp /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/utils/options_description.cpp:34:30: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 34 | struct option long_options[options.size() + 1]; | ^~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/utils/options_description.cpp:34:30: note: implicit use of 'this' pointer is only allowed within the evaluation of a call to a 'constexpr' member function 1 warning generated. [ 14% 79/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/sequence.cpp [ 15% 80/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_writer.cpp [ 16% 81/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_sdbg_build.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_sdbg_build.cpp:29: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.h:53:18: warning: class with destructor marked 'final' cannot be inherited from [-Wfinal-dtor-non-final-class] 46 | class KmerCounter : public BaseSequenceSortingEngine { | final 47 | public: 48 | static const unsigned kSentinelValue = 4; 49 | static const uint32_t kSentinelOffset = 4294967295U; 50 | explicit KmerCounter(const KmerCounterOption &opt) 51 | : BaseSequenceSortingEngine(opt.host_mem, opt.mem_flag, opt.n_threads), 52 | opt_(opt) {} 53 | ~KmerCounter() final = default; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.h:46:7: note: mark 'KmerCounter' as 'final' to silence this warning 46 | class KmerCounter : public BaseSequenceSortingEngine { | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_sdbg_build.cpp:30: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg.h:33: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 2 warnings generated. [ 17% 82/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/fastx_reader.cpp [ 18% 83/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.cpp:5: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 1 warning generated. [ 19% 84/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg_s2.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg_s2.cpp:22: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg.h:33: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 1 warning generated. [ 20% 85/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/fastx_reader.cpp [ 20% 86/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_meta.cpp [ 21% 87/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_sdbg_build.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_sdbg_build.cpp:29: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.h:53:18: warning: class with destructor marked 'final' cannot be inherited from [-Wfinal-dtor-non-final-class] 46 | class KmerCounter : public BaseSequenceSortingEngine { | final 47 | public: 48 | static const unsigned kSentinelValue = 4; 49 | static const uint32_t kSentinelOffset = 4294967295U; 50 | explicit KmerCounter(const KmerCounterOption &opt) 51 | : BaseSequenceSortingEngine(opt.host_mem, opt.mem_flag, opt.n_threads), 52 | opt_(opt) {} 53 | ~KmerCounter() final = default; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.h:46:7: note: mark 'KmerCounter' as 'final' to silence this warning 46 | class KmerCounter : public BaseSequenceSortingEngine { | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_sdbg_build.cpp:30: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg.h:33: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 2 warnings generated. [ 22% 88/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/low_depth_remover.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/low_depth_remover.cpp:6: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 23% 89/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/low_depth_remover.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/low_depth_remover.cpp:6: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 24% 90/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.cpp:1: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.h:53:18: warning: class with destructor marked 'final' cannot be inherited from [-Wfinal-dtor-non-final-class] 46 | class KmerCounter : public BaseSequenceSortingEngine { | final 47 | public: 48 | static const unsigned kSentinelValue = 4; 49 | static const uint32_t kSentinelOffset = 4294967295U; 50 | explicit KmerCounter(const KmerCounterOption &opt) 51 | : BaseSequenceSortingEngine(opt.host_mem, opt.mem_flag, opt.n_threads), 52 | opt_(opt) {} 53 | ~KmerCounter() final = default; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.h:46:7: note: mark 'KmerCounter' as 'final' to silence this warning 46 | class KmerCounter : public BaseSequenceSortingEngine { | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.cpp:6: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 2 warnings generated. [ 25% 91/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/contig_output.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/contig_output.cpp:8: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 26% 92/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/weak_link_remover.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/weak_link_remover.cpp:6: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 27% 93/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/base_engine.cpp /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/base_engine.cpp:173:7: warning: variable 'lv1_iteration' set but not used [-Wunused-but-set-variable] 173 | int lv1_iteration = 0; | ^ 1 warning generated. [ 28% 94/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_raw_content.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_raw_content.cpp:5: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_raw_content.h:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_raw_content.cpp:39:10: warning: variable 'file_offset' set but not used [-Wunused-but-set-variable] 39 | size_t file_offset = 0; | ^ 5 warnings generated. [ 29% 95/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main.cpp.o -MF CMakeFiles/megahit_core.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main.cpp [ 30% 96/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:24:35: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:31:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:38:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:45:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:52:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:59:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:66:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:73:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:19:27: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:553:18: note: in instantiation of template class 'Hash' requested here 553 | hash_func_type hash_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:150:21: note: in instantiation of template class 'HashTableST' requested here 150 | vertex_table_type vertex_table_; | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ 9 warnings generated. [ 30% 97/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/tip_remover.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/tip_remover.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/tip_remover.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/tip_remover.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/tip_remover.cpp:6: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 31% 98/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:24:35: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:31:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:38:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:45:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:52:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:59:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:66:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:73:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:19:27: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:553:18: note: in instantiation of template class 'Hash' requested here 553 | hash_func_type hash_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:150:21: note: in instantiation of template class 'HashTableST' requested here 150 | vertex_table_type vertex_table_; | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ 9 warnings generated. [ 32% 99/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg_s1.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg_s1.cpp:22: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg.h:33: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 1 warning generated. [ 33% 100/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/hash_mapper.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/hash_mapper.cpp:5: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/hash_mapper.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 34% 101/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:16: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:24:35: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:31:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:38:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:45:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:52:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:59:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:66:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:73:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:19:27: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:553:18: note: in instantiation of template class 'Hash' requested here 553 | hash_func_type hash_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:150:21: note: in instantiation of template class 'HashTableST' requested here 150 | vertex_table_type vertex_table_; | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ 13 warnings generated. [ 35% 102/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/contig_output.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/contig_output.cpp:8: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 36% 103/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main.cpp [ 37% 104/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/sdbg_pruning.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/sdbg_pruning.cpp:22: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/sdbg_pruning.h:27: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg.h:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_raw_content.h:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 38% 105/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.cpp:5: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 1 warning generated. [ 39% 106/110] cd /wrkdirs/usr/ports/biology/megahit/work/.build && /usr/local/bin/cmake -E create_symlink megahit_core_no_hw_accel megahit_toolkit [ 40% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/tip_remover.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/tip_remover.cpp:6: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 40% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/tools/contigs_to_fastg.cpp [ 41% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/weak_link_remover.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/weak_link_remover.cpp:6: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 42% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:16: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:24:35: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:31:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:38:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:45:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:52:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:59:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:66:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:73:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:19:27: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:553:18: note: in instantiation of template class 'Hash' requested here 553 | hash_func_type hash_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:150:21: note: in instantiation of template class 'HashTableST' requested here 150 | vertex_table_type vertex_table_; | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ 13 warnings generated. [ 43% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/tools/filter_by_len.cpp [ 44% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/base_engine.cpp /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/base_engine.cpp:173:7: warning: variable 'lv1_iteration' set but not used [-Wunused-but-set-variable] 173 | int lv1_iteration = 0; | ^ 1 warning generated. [ 45% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_buildlib.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_buildlib.cpp:1: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 1 warning generated. [ 46% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.cpp:1: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.h:53:18: warning: class with destructor marked 'final' cannot be inherited from [-Wfinal-dtor-non-final-class] 46 | class KmerCounter : public BaseSequenceSortingEngine { | final 47 | public: 48 | static const unsigned kSentinelValue = 4; 49 | static const uint32_t kSentinelOffset = 4294967295U; 50 | explicit KmerCounter(const KmerCounterOption &opt) 51 | : BaseSequenceSortingEngine(opt.host_mem, opt.mem_flag, opt.n_threads), 52 | opt_(opt) {} 53 | ~KmerCounter() final = default; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.h:46:7: note: mark 'KmerCounter' as 'final' to silence this warning 46 | class KmerCounter : public BaseSequenceSortingEngine { | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.cpp:6: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 2 warnings generated. [ 47% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/bubble_remover.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/bubble_remover.cpp:5: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/bubble_remover.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 48% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/hash_mapper.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/hash_mapper.cpp:5: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/hash_mapper.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 49% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/seq_to_sdbg.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/seq_to_sdbg.cpp:30: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/async_sequence_reader.h:10: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 1 warning generated. [ 50% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_local_assemble.cpp [ 50% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/sdbg_pruning.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/sdbg_pruning.cpp:22: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/sdbg_pruning.h:27: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg.h:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_raw_content.h:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 51% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/tools/read_stat.cpp [ 52% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/utils/options_description.cpp /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/utils/options_description.cpp:34:30: warning: variable length arrays in C++ are a Clang extension [-Wvla-cxx-extension] 34 | struct option long_options[options.size() + 1]; | ^~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/utils/options_description.cpp:34:30: note: implicit use of 'this' pointer is only allowed within the evaluation of a call to a 'constexpr' member function 1 warning generated. [ 53% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:16: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:24:35: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:31:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:38:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:45:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:52:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:59:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:66:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:73:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:19:27: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:553:18: note: in instantiation of template class 'Hash' requested here 553 | hash_func_type hash_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:150:21: note: in instantiation of template class 'HashTableST' requested here 150 | vertex_table_type vertex_table_; | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ 13 warnings generated. [ 54% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.cpp:5: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 55% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.cpp:5: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 56% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg_s1.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg_s1.cpp:22: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg.h:33: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 1 warning generated. [ 57% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_assemble.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_assemble.cpp:29: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/all_algo.h:8: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/bubble_remover.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 58% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/sequence.cpp [ 59% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/paired_fastx_reader.cpp [ 60% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_sdbg_build.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_sdbg_build.cpp:29: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.h:53:18: warning: class with destructor marked 'final' cannot be inherited from [-Wfinal-dtor-non-final-class] 46 | class KmerCounter : public BaseSequenceSortingEngine { | final 47 | public: 48 | static const unsigned kSentinelValue = 4; 49 | static const uint32_t kSentinelOffset = 4294967295U; 50 | explicit KmerCounter(const KmerCounterOption &opt) 51 | : BaseSequenceSortingEngine(opt.host_mem, opt.mem_flag, opt.n_threads), 52 | opt_(opt) {} 53 | ~KmerCounter() final = default; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.h:46:7: note: mark 'KmerCounter' as 'final' to silence this warning 46 | class KmerCounter : public BaseSequenceSortingEngine { | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_sdbg_build.cpp:30: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg.h:33: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 2 warnings generated. [ 60% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:16: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:24:35: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:31:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:38:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:45:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:52:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:59:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:66:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:73:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:19:27: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:553:18: note: in instantiation of template class 'Hash' requested here 553 | hash_func_type hash_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:150:21: note: in instantiation of template class 'HashTableST' requested here 150 | vertex_table_type vertex_table_; | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:19: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 14 warnings generated. [ 61% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/fastx_reader.cpp [ 62% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/tip_remover.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/tip_remover.cpp:6: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 63% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_writer.cpp [ 64% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/bubble_remover.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/bubble_remover.cpp:5: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/bubble_remover.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 65% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/tools/read_stat.cpp [ 66% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_assemble.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_assemble.cpp:29: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/all_algo.h:8: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/bubble_remover.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 67% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_meta.cpp [ 68% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/contig_output.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/contig_output.cpp:8: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 69% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/low_depth_remover.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/low_depth_remover.cpp:6: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 70% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main.cpp [ 70% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg_s2.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg_s2.cpp:22: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg.h:33: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 1 warning generated. [ 71% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/tools/filter_by_len.cpp [ 72% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_raw_content.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_raw_content.cpp:5: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_raw_content.h:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_raw_content.cpp:39:10: warning: variable 'file_offset' set but not used [-Wunused-but-set-variable] 39 | size_t file_offset = 0; | ^ 5 warnings generated. [ 73% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:16: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:24:35: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:31:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:38:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:45:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:52:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:59:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:66:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:73:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:19:27: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:553:18: note: in instantiation of template class 'Hash' requested here 553 | hash_func_type hash_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:150:21: note: in instantiation of template class 'HashTableST' requested here 150 | vertex_table_type vertex_table_; | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ 13 warnings generated. [ 74% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:16: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:24:35: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:31:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:38:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:45:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:52:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:59:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:66:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:73:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:19:27: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:553:18: note: in instantiation of template class 'Hash' requested here 553 | hash_func_type hash_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:150:21: note: in instantiation of template class 'HashTableST' requested here 150 | vertex_table_type vertex_table_; | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:19: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 14 warnings generated. [ 75% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/weak_link_remover.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/weak_link_remover.cpp:6: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 76% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/tools/contigs_to_fastg.cpp [ 77% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg_s1.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg_s1.cpp:22: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg.h:33: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 1 warning generated. [ 78% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.cpp:5: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 1 warning generated. [ 79% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:16: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:24:35: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:31:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:38:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:45:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:52:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:59:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:66:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:73:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph_branch_group.h:15: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:19:27: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:553:18: note: in instantiation of template class 'Hash' requested here 553 | hash_func_type hash_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:150:21: note: in instantiation of template class 'HashTableST' requested here 150 | vertex_table_type vertex_table_; | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ 13 warnings generated. [ 80% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:24:35: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:31:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:38:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:45:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:52:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:59:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:66:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:73:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:20: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:19:27: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:553:18: note: in instantiation of template class 'Hash' requested here 553 | hash_func_type hash_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:150:21: note: in instantiation of template class 'HashTableST' requested here 150 | vertex_table_type vertex_table_; | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ 9 warnings generated. [ 80% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/base_engine.cpp /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/base_engine.cpp:173:7: warning: variable 'lv1_iteration' set but not used [-Wunused-but-set-variable] 173 | int lv1_iteration = 0; | ^ 1 warning generated. [ 81% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/sdbg_pruning.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/sdbg_pruning.cpp:22: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/sdbg_pruning.h:27: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg.h:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sdbg/sdbg_raw_content.h:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 82% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/bubble_remover.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/bubble_remover.cpp:5: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/bubble_remover.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 83% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.cpp:1: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.h:53:18: warning: class with destructor marked 'final' cannot be inherited from [-Wfinal-dtor-non-final-class] 46 | class KmerCounter : public BaseSequenceSortingEngine { | final 47 | public: 48 | static const unsigned kSentinelValue = 4; 49 | static const uint32_t kSentinelOffset = 4294967295U; 50 | explicit KmerCounter(const KmerCounterOption &opt) 51 | : BaseSequenceSortingEngine(opt.host_mem, opt.mem_flag, opt.n_threads), 52 | opt_(opt) {} 53 | ~KmerCounter() final = default; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.h:46:7: note: mark 'KmerCounter' as 'final' to silence this warning 46 | class KmerCounter : public BaseSequenceSortingEngine { | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmer_counter.cpp:6: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 2 warnings generated. [ 84% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/hash_mapper.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/hash_mapper.cpp:5: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/hash_mapper.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 85% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/seq_to_sdbg.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/seq_to_sdbg.cpp:30: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/async_sequence_reader.h:10: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 1 warning generated. [ 86% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg_s2.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg_s2.cpp:22: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/read_to_sdbg.h:33: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 1 warning generated. [ 87% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_assemble.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_assemble.cpp:29: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/all_algo.h:8: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/bubble_remover.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 88% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:16: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:24:35: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:31:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:38:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:45:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:52:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:59:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:66:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:73:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.cpp:9: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:19:27: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:553:18: note: in instantiation of template class 'Hash' requested here 553 | hash_func_type hash_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:150:21: note: in instantiation of template class 'HashTableST' requested here 150 | vertex_table_type vertex_table_; | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ 13 warnings generated. [ 89% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.cpp:5: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/assembly/unitig_graph.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ 4 warnings generated. [ 90% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/seq_to_sdbg.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/seq_to_sdbg.cpp:30: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/async_sequence_reader.h:10: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 1 warning generated. [ 90% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:16: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:24:35: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 24 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:31:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 31 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:38:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 38 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:45:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:52:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 52 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:59:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:66:36: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 66 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:73:37: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 73 | struct Hash : public std::unary_function { | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/contig_graph.h:22: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash.h:19:27: warning: 'unary_function' is deprecated [-Wdeprecated-declarations] 19 | struct Hash : public std::unary_function { | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_table.h:553:18: note: in instantiation of template class 'Hash' requested here 553 | hash_func_type hash_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/idba/hash_graph.h:150:21: note: in instantiation of template class 'HashTableST' requested here 150 | vertex_table_type vertex_table_; | ^ /usr/include/c++/v1/__functional/unary_function.h:23:29: note: 'unary_function' has been explicitly marked deprecated here 23 | struct _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 unary_function { | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/localasm/local_assemble.cpp:19: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/sequence_lib.h:31: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ 14 warnings generated. [ 91% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:38: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/async_sequence_reader.h:10: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:150:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 150 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:150:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 150 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:150:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 150 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:151:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 151 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:151:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 151 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:151:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 151 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:152:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 152 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:152:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 152 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:152:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 152 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:153:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 153 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:153:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 153 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:153:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 153 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:154:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 154 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:154:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 154 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:154:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 154 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:155:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 155 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:155:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 155 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:155:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 155 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:156:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 156 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:156:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 156 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:156:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 156 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:157:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 157 | if (ReadReadsAndProcessKernel>(opt, index)) | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:157:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 157 | if (ReadReadsAndProcessKernel>(opt, index)) | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:157:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 157 | if (ReadReadsAndProcessKernel>(opt, index)) | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ 29 warnings generated. [ 92% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:38: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/async_sequence_reader.h:10: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:150:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 150 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:150:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 150 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:150:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 150 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:151:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 151 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:151:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 151 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:151:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 151 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:152:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 152 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:152:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 152 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:152:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 152 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:153:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 153 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:153:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 153 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:153:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 153 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:154:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 154 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:154:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 154 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:154:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 154 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:155:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 155 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:155:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 155 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:155:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 155 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:156:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 156 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:156:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 156 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:156:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 156 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:157:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 157 | if (ReadReadsAndProcessKernel>(opt, index)) | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:157:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 157 | if (ReadReadsAndProcessKernel>(opt, index)) | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:157:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 157 | if (ReadReadsAndProcessKernel>(opt, index)) | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ 29 warnings generated. [ 93% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant::type) && | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:38: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/async_sequence_reader.h:10: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sequence/io/binary_reader.h:26:13: warning: variable 'num_bases' set but not used [-Wunused-but-set-variable] 26 | int64_t num_bases = 0; | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:150:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 150 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:150:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 150 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:150:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 150 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:151:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 151 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:151:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 151 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:151:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 151 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:152:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 152 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:152:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 152 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:152:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 152 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:153:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 153 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:153:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 153 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:153:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 153 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:154:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 154 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:154:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 154 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:154:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 154 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:155:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 155 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:155:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 155 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:155:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 155 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:156:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 156 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:156:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 156 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:156:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 156 | if (ReadReadsAndProcessKernel>(opt, index)) return; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:329:36: warning: builtin __has_trivial_copy is deprecated; use __is_trivially_copyable instead [-Wdeprecated-builtins] 329 | : std::integral_constant, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:157:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 157 | if (ReadReadsAndProcessKernel>(opt, index)) | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:242:36: warning: builtin __has_trivial_destructor is deprecated; use __is_trivially_destructible instead [-Wdeprecated-builtins] 242 | : std::integral_constant, unsigned short>>>' requested here 331 | is_trivially_destructible::value> | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1923:32: note: in instantiation of template class 'phmap::is_trivially_copy_constructible, unsigned short>>>' requested here 1923 | bool unused = phmap::is_trivially_copy_constructible::value&& | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2158:45: note: in instantiation of default argument for 'optional_data, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:157:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 157 | if (ReadReadsAndProcessKernel>(opt, index)) | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:36: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:10: In file included from /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap.h:51: /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:367:17: warning: builtin __has_trivial_assign is deprecated; use __is_trivially_assignable instead [-Wdeprecated-builtins] 367 | bool, __has_trivial_assign(typename std::remove_reference::type) && | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:1924:22: note: in instantiation of template class 'phmap::is_trivially_copy_assignable, unsigned short>>>' requested here 1924 | phmap::is_trivially_copy_assignable, unsigned short>>>' required here 2158 | class optional : private optional_internal::optional_data, | ^~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2904:37: note: in instantiation of template class 'phmap::optional, unsigned short>>>' requested here 2904 | phmap::optional alloc_; | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/parallel_hashmap/phmap_base.h:2913:28: note: in instantiation of template class 'phmap::container_internal::node_handle_base, unsigned short>>>, std::allocator, unsigned short>>>' requested here 2913 | class node_handle : public node_handle_base | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/kmer_collector.h:38:24: note: in instantiation of template class 'phmap::container_internal::node_handle, unsigned short>>, phmap::container_internal::hash_policy_traits, unsigned short>>>, std::allocator, unsigned short>>>' requested here 38 | collection_.insert({kmer, mul}); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/iterate/contig_flank_index.h:206:16: note: in instantiation of member function 'KmerCollector>::Insert' requested here 206 | out->Insert(new_kmer < new_rkmer ? new_kmer : new_rkmer, | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:136:32: note: in instantiation of function template specialization 'ContigFlankIndex>::FindNextKmersFromReads>>' requested here 136 | num_aligned_reads += index.FindNextKmersFromReads(read_pkg, &collector); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:157:7: note: in instantiation of function template specialization 'ReadReadsAndProcessKernel, ContigFlankIndex>>' requested here 157 | if (ReadReadsAndProcessKernel>(opt, index)) | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:194:5: note: in instantiation of function template specialization 'ReadReadsAndProcess>>' requested here 194 | ReadReadsAndProcess(opt, index); | ^ /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/main_iterate.cpp:204:28: note: in instantiation of member function 'Runner>::Run' requested here 204 | runners.emplace_back(new Runner>()); | ^ 29 warnings generated. [ 94% 106/110] /usr/local/libexec/ccache/c++ -I/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmsort_selector.cpp [ 95% 107/110] : && /usr/local/libexec/ccache/c++ -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG 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-D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o -c /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/sorting/kmsort_selector.cpp [ 99% 109/110] : && /usr/local/libexec/ccache/c++ -O2 -pipe -pthread -fstack-protector-strong -fno-strict-aliasing -fopenmp=libomp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src"' -DNDEBUG -Xlinker --dependency-file=CMakeFiles/megahit_core_no_hw_accel.dir/link.d CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o -o megahit_core_no_hw_accel -lz && : [100% 110/110] cd /wrkdirs/usr/ports/biology/megahit/work/.build && cp /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/megahit . =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> megahit-1.2.9.20 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for megahit-1.2.9.20 ===> Generating temporary packing list [ 33% 1/3] cd /wrkdirs/usr/ports/biology/megahit/work/.build && /usr/local/bin/cmake -E create_symlink megahit_core_no_hw_accel megahit_toolkit [ 66% 2/3] cd /wrkdirs/usr/ports/biology/megahit/work/.build && cp /wrkdirs/usr/ports/biology/megahit/work/megahit-1.2.9-20-g3821b10/src/megahit . [ 66% 3/3] cd /wrkdirs/usr/ports/biology/megahit/work/.build && /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /wrkdirs/usr/ports/biology/megahit/work/stage/usr/local/bin/megahit_core -- Installing: /wrkdirs/usr/ports/biology/megahit/work/stage/usr/local/bin/megahit_core_popcnt -- Installing: /wrkdirs/usr/ports/biology/megahit/work/stage/usr/local/bin/megahit_core_no_hw_accel -- Installing: /wrkdirs/usr/ports/biology/megahit/work/stage/usr/local/bin/megahit -- Installing: /wrkdirs/usr/ports/biology/megahit/work/stage/usr/local/bin/megahit_toolkit -- Installing: /wrkdirs/usr/ports/biology/megahit/work/stage/usr/local/share/megahit/test_data -- Installing: /wrkdirs/usr/ports/biology/megahit/work/stage/usr/local/share/megahit/test_data/r2.il.fa.bz2 -- Installing: /wrkdirs/usr/ports/biology/megahit/work/stage/usr/local/share/megahit/test_data/empty.fa -- Installing: /wrkdirs/usr/ports/biology/megahit/work/stage/usr/local/share/megahit/test_data/r3_2.fa -- Installing: /wrkdirs/usr/ports/biology/megahit/work/stage/usr/local/share/megahit/test_data/r4.fa -- Installing: /wrkdirs/usr/ports/biology/megahit/work/stage/usr/local/share/megahit/test_data/loop.fa -- Installing: /wrkdirs/usr/ports/biology/megahit/work/stage/usr/local/share/megahit/test_data/r1.il.fa.gz -- Installing: /wrkdirs/usr/ports/biology/megahit/work/stage/usr/local/share/megahit/test_data/ref.fa -- Installing: /wrkdirs/usr/ports/biology/megahit/work/stage/usr/local/share/megahit/test_data/r3_1.fa -- Installing: /wrkdirs/usr/ports/biology/megahit/work/stage/usr/local/share/megahit/test_data/generate_random_fasta.py ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-03-17T17:14:36+0000' 'PKG_NOTE_ports_top_git_hash=8c988f802ea2' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=b3b1a391c149' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for megahit-1.2.9.20 ===> Building megahit-1.2.9.20 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for megahit-1.2.9.20 build of biology/megahit | megahit-1.2.9.20 ended at Tue Mar 17 13:17:33 EDT 2026 build time: 00:03:06