=>> Building science/libghemical build started at Wed Mar 18 13:41:24 EDT 2026 port directory: /usr/ports/science/libghemical package name: libghemical-3.0.0_21 building for: FreeBSD pkg.DaveG.ca 15.0-RELEASE-p3 FreeBSD 15.0-RELEASE-p3 1500068 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1244 Jan 31 2025 /usr/ports/science/libghemical/Makefile Ports top last git commit: 8c988f802ea2 Ports top unclean checkout: no Port dir last git commit: 6cce1f5b223a Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1500068 Job Id: 15 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500068 UNAME_v=FreeBSD 15.0-RELEASE-p3 1500068 UNAME_r=15.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/15/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_15_0_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --enable-mpqc --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran14" F90="gfortran14" FC="gfortran14" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc14" MAKE=/usr/local/bin/gmake PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/science/libghemical/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/libghemical/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/libghemical/work/.cache HOME=/wrkdirs/usr/ports/science/libghemical/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/libghemical/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/libghemical/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran14" F90="gfortran14" FC="gfortran14" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc14" XDG_DATA_HOME=/wrkdirs/usr/ports/science/libghemical/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/libghemical/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/libghemical/work/.cache HOME=/wrkdirs/usr/ports/science/libghemical/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/libghemical/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/libghemical/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lSCbasis -lSCcints -lSCclass -lSCcontainer -lSCdft -lSCgroup -lSCintv3 -lSCisosurf -lSCkeyval -lSCmbpt -lSCmbptr12 -lSCmisc -lSCmolecule -lSCoint3 -lSCoptimize -lSCoptions -lSCpsi -lSCref -lSCrender -lSCscf -lSCscmat -lSCsolvent -lSCstate -lSCsymmetry -lSCwfn -lgfortran -lpthread -lblas -llapack -Wl,-rpath=/usr/local/lib/gcc14 -L/usr/local/lib/gcc14 " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 " CXXSTD=c++98 BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- LIBGHEMICAL_VERSION="3.0.0" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/libghemical" EXAMPLESDIR="share/examples/libghemical" DATADIR="share/libghemical" WWWDIR="www/libghemical" ETCDIR="etc/libghemical" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libghemical DOCSDIR=/usr/local/share/doc/libghemical EXAMPLESDIR=/usr/local/share/examples/libghemical WWWDIR=/usr/local/www/libghemical ETCDIR=/usr/local/etc/libghemical --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> libghemical-3.0.0_21 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.6.2.pkg [pkg.DaveG.ca] Installing pkg-2.6.2... [pkg.DaveG.ca] Extracting pkg-2.6.2: .......... done ===> libghemical-3.0.0_21 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libghemical-3.0.0_21 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by libghemical-3.0.0_21 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by libghemical-3.0.0_21 for building => SHA256 Checksum OK for libghemical-3.0.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by libghemical-3.0.0_21 for building ===> Extracting for libghemical-3.0.0_21 => SHA256 Checksum OK for libghemical-3.0.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for libghemical-3.0.0_21 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> libghemical-3.0.0_21 depends on executable: obabel - not found ===> Installing existing package /packages/All/openbabel-3.1.1.178_6.pkg [pkg.DaveG.ca] Installing openbabel-3.1.1.178_6... [pkg.DaveG.ca] `-- Installing boost-libs-1.89.0_2... [pkg.DaveG.ca] | `-- Installing icu-76.1,1... [pkg.DaveG.ca] | `-- Extracting icu-76.1,1: .......... done [pkg.DaveG.ca] | `-- Installing zstd-1.5.7_1... [pkg.DaveG.ca] | `-- Extracting zstd-1.5.7_1: .......... done [pkg.DaveG.ca] `-- Extracting boost-libs-1.89.0_2: .......... done [pkg.DaveG.ca] `-- Installing cairo-1.18.2,3... [pkg.DaveG.ca] | `-- Installing fontconfig-2.17.1,1... [pkg.DaveG.ca] | | `-- Installing expat-2.7.4... [pkg.DaveG.ca] | | `-- Extracting expat-2.7.4: .......... done [pkg.DaveG.ca] | | `-- Installing freetype2-2.14.1... [pkg.DaveG.ca] | | `-- Installing brotli-1.2.0,1... [pkg.DaveG.ca] | | `-- Extracting brotli-1.2.0,1: .......... done [pkg.DaveG.ca] | | `-- Installing png-1.6.55... [pkg.DaveG.ca] | | `-- Extracting png-1.6.55: .......... done [pkg.DaveG.ca] | | `-- Extracting freetype2-2.14.1: .......... done [pkg.DaveG.ca] | | `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | | `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] | `-- Extracting fontconfig-2.17.1,1: .......... done [pkg.DaveG.ca] | `-- Installing glib-2.84.4,2... [pkg.DaveG.ca] | | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | | `-- Installing libiconv-1.18_1... [pkg.DaveG.ca] | | `-- Extracting libiconv-1.18_1: .......... done [pkg.DaveG.ca] | | `-- Installing pcre2-10.47_1... [pkg.DaveG.ca] | | `-- Extracting pcre2-10.47_1: .......... done [pkg.DaveG.ca] | | `-- Installing py311-packaging-26.0... [pkg.DaveG.ca] | | `-- Installing python311-3.11.15... [pkg.DaveG.ca] | | | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | | | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | | | `-- Installing readline-8.3.3... [pkg.DaveG.ca] | | | `-- Extracting readline-8.3.3: .......... done [pkg.DaveG.ca] | | `-- Extracting python311-3.11.15: .......... done [pkg.DaveG.ca] | | `-- Extracting py311-packaging-26.0: .......... done [pkg.DaveG.ca] | `-- Extracting glib-2.84.4,2: .......... done [pkg.DaveG.ca] | `-- Installing libX11-1.8.13,1... [pkg.DaveG.ca] | | `-- Installing libxcb-1.17.0... [pkg.DaveG.ca] | | `-- Installing libXau-1.0.12... [pkg.DaveG.ca] | | `-- Extracting libXau-1.0.12: .......... done [pkg.DaveG.ca] | | `-- Installing libXdmcp-1.1.5... [pkg.DaveG.ca] | | | `-- Installing xorgproto-2024.1... [pkg.DaveG.ca] | | | `-- Extracting xorgproto-2024.1: .......... done [pkg.DaveG.ca] | | `-- Extracting libXdmcp-1.1.5: ...... done [pkg.DaveG.ca] | | `-- Extracting libxcb-1.17.0: .......... done [pkg.DaveG.ca] | `-- Extracting libX11-1.8.13,1: .......... done [pkg.DaveG.ca] | `-- Installing libXext-1.3.6,1... [pkg.DaveG.ca] | `-- Extracting libXext-1.3.6,1: .......... done [pkg.DaveG.ca] | `-- Installing libXrender-0.9.12... [pkg.DaveG.ca] | `-- Extracting libXrender-0.9.12: ....... done [pkg.DaveG.ca] | `-- Installing lzo2-2.10_1... [pkg.DaveG.ca] | `-- Extracting lzo2-2.10_1: .......... done [pkg.DaveG.ca] | `-- Installing pixman-0.46.2... [pkg.DaveG.ca] | `-- Extracting pixman-0.46.2: ...... done [pkg.DaveG.ca] `-- Extracting cairo-1.18.2,3: .......... done [pkg.DaveG.ca] `-- Installing coordgenlibs-3.0.2... [pkg.DaveG.ca] | `-- Installing maeparser-1.3.3_1... [pkg.DaveG.ca] | `-- Extracting maeparser-1.3.3_1: .......... done [pkg.DaveG.ca] `-- Extracting coordgenlibs-3.0.2: .......... done [pkg.DaveG.ca] `-- Installing libxml2-2.15.2... [pkg.DaveG.ca] `-- Extracting libxml2-2.15.2: .......... done [pkg.DaveG.ca] `-- Installing wx30-gtk3-3.0.5.1_7... [pkg.DaveG.ca] | `-- Installing at-spi2-core-2.56.7... [pkg.DaveG.ca] | | `-- Installing dbus-1.16.2_4,1... [pkg.DaveG.ca] | | `-- Installing libICE-1.1.2,1... [pkg.DaveG.ca] | | `-- Extracting libICE-1.1.2,1: .......... done [pkg.DaveG.ca] | | `-- Installing libSM-1.2.6,1... [pkg.DaveG.ca] | | `-- Extracting libSM-1.2.6,1: ........ done ===> Creating groups Creating group 'messagebus' with gid '556' ===> Creating users Creating user 'messagebus' with uid '556' [pkg.DaveG.ca] | | `-- Extracting dbus-1.16.2_4,1: ......... done [pkg.DaveG.ca] | | `-- Installing gsettings-desktop-schemas-47.1_2... [pkg.DaveG.ca] | | `-- Extracting gsettings-desktop-schemas-47.1_2: .......... done [pkg.DaveG.ca] | | `-- Installing libXi-1.8.2,1... [pkg.DaveG.ca] | | `-- Installing libXfixes-6.0.1... [pkg.DaveG.ca] | | `-- Extracting libXfixes-6.0.1: ....... done [pkg.DaveG.ca] | | `-- Extracting libXi-1.8.2,1: .......... done [pkg.DaveG.ca] | | `-- Installing libXtst-1.2.5... [pkg.DaveG.ca] | | `-- Extracting libXtst-1.2.5: .......... done [pkg.DaveG.ca] | `-- Extracting at-spi2-core-2.56.7: .......... done [pkg.DaveG.ca] | `-- Installing gdk-pixbuf2-2.44.1... [pkg.DaveG.ca] | | `-- Installing jpeg-turbo-3.1.3... [pkg.DaveG.ca] | | `-- Extracting jpeg-turbo-3.1.3: .......... done [pkg.DaveG.ca] | | `-- Installing shared-mime-info-2.4_2... [pkg.DaveG.ca] | | `-- Extracting shared-mime-info-2.4_2: ......... done [pkg.DaveG.ca] | | `-- Installing tiff-4.7.1... [pkg.DaveG.ca] | | `-- Installing jbigkit-2.1_3... [pkg.DaveG.ca] | | `-- Extracting jbigkit-2.1_3: .......... done [pkg.DaveG.ca] | | `-- Installing lerc-4.0.0... [pkg.DaveG.ca] | | `-- Extracting lerc-4.0.0: ..... done [pkg.DaveG.ca] | | `-- Installing libdeflate-1.25... [pkg.DaveG.ca] | | `-- Extracting libdeflate-1.25: .......... done [pkg.DaveG.ca] | | `-- Extracting tiff-4.7.1: .......... done [pkg.DaveG.ca] | `-- Extracting gdk-pixbuf2-2.44.1: .......... done [pkg.DaveG.ca] | `-- Installing gstreamer1-1.28.1... [pkg.DaveG.ca] | | `-- Installing libunwind-20250904... [pkg.DaveG.ca] | | `-- Extracting libunwind-20250904: .......... done [pkg.DaveG.ca] | `-- Extracting gstreamer1-1.28.1: .......... done [pkg.DaveG.ca] | `-- Installing gstreamer1-plugins-1.28.1... [pkg.DaveG.ca] | | `-- Installing iso-codes-4.20.1... [pkg.DaveG.ca] | | `-- Extracting iso-codes-4.20.1: .......... done [pkg.DaveG.ca] | | `-- Installing libdrm-2.4.131,1... [pkg.DaveG.ca] | | `-- Installing libpciaccess-0.18.1_1... [pkg.DaveG.ca] | | | `-- Installing hwdata-0.405,1... [pkg.DaveG.ca] | | | `-- Extracting hwdata-0.405,1: ...... done [pkg.DaveG.ca] | | `-- Extracting libpciaccess-0.18.1_1: ..... done [pkg.DaveG.ca] | | `-- Extracting libdrm-2.4.131,1: .......... done [pkg.DaveG.ca] | | `-- Installing orc-0.4.42... [pkg.DaveG.ca] | | `-- Extracting orc-0.4.42: .......... done [pkg.DaveG.ca] | `-- Extracting gstreamer1-plugins-1.28.1: .......... done [pkg.DaveG.ca] | `-- Installing gtk3-3.24.51... [pkg.DaveG.ca] | | `-- Installing adwaita-icon-theme-47.0... [pkg.DaveG.ca] | | `-- Installing adwaita-icon-theme-legacy-46.2... [pkg.DaveG.ca] | | | `-- Installing gtk-update-icon-cache-3.24.42... [pkg.DaveG.ca] | | | `-- Extracting gtk-update-icon-cache-3.24.42: .......... done [pkg.DaveG.ca] | | `-- Extracting adwaita-icon-theme-legacy-46.2: .......... done [pkg.DaveG.ca] | | `-- Extracting adwaita-icon-theme-47.0: .......... done [pkg.DaveG.ca] | | `-- Installing colord-1.4.8_1... [pkg.DaveG.ca] | | `-- Installing lcms2-2.18... [pkg.DaveG.ca] | | `-- Extracting lcms2-2.18: .......... done [pkg.DaveG.ca] | | `-- Installing libgudev-237... [pkg.DaveG.ca] | | | `-- Installing libudev-devd-0.6.0... [pkg.DaveG.ca] | | | `-- Extracting libudev-devd-0.6.0: ..... done [pkg.DaveG.ca] | | `-- Extracting libgudev-237: .......... done [pkg.DaveG.ca] | | `-- Installing libgusb-0.4.9_1... [pkg.DaveG.ca] | | | `-- Installing json-glib-1.10.8... [pkg.DaveG.ca] | | | `-- Installing gobject-introspection-1.84.0,1... [pkg.DaveG.ca] | | | `-- Extracting gobject-introspection-1.84.0,1: .......... done [pkg.DaveG.ca] | | | `-- Extracting json-glib-1.10.8: .......... done [pkg.DaveG.ca] | | `-- Extracting libgusb-0.4.9_1: .......... done [pkg.DaveG.ca] | | `-- Installing polkit-127... [pkg.DaveG.ca] | | | `-- Installing duktape-lib-2.7.0_1... [pkg.DaveG.ca] | | | `-- Extracting duktape-lib-2.7.0_1: ...... done ===> Creating groups Creating group 'polkitd' with gid '565' ===> Creating users Creating user 'polkitd' with uid '565' [pkg.DaveG.ca] | | `-- Extracting polkit-127: ......... done [pkg.DaveG.ca] | | `-- Installing sqlite3-3.50.4_2,1... [pkg.DaveG.ca] | | | `-- Installing libedit-3.1.20251016_1,1... [pkg.DaveG.ca] | | | `-- Extracting libedit-3.1.20251016_1,1: .......... done [pkg.DaveG.ca] | | `-- Extracting sqlite3-3.50.4_2,1: .......... done ===> Creating groups Creating group 'colord' with gid '970' ===> Creating users Creating user 'colord' with uid '970' [pkg.DaveG.ca] | | `-- Extracting colord-1.4.8_1: .......... done [pkg.DaveG.ca] | | `-- Installing cups-2.4.16... [pkg.DaveG.ca] | | `-- Installing avahi-app-0.8_6... [pkg.DaveG.ca] | | | `-- Installing dbus-glib-0.114... [pkg.DaveG.ca] | | | `-- Extracting dbus-glib-0.114: .......... done [pkg.DaveG.ca] | | | `-- Installing gdbm-1.26... [pkg.DaveG.ca] | | | `-- Extracting gdbm-1.26: .......... done [pkg.DaveG.ca] | | | `-- Installing gnome_subr-1.0... [pkg.DaveG.ca] | | | `-- Extracting gnome_subr-1.0: . done [pkg.DaveG.ca] | | | `-- Installing libdaemon-0.14_1... [pkg.DaveG.ca] | | | `-- Extracting libdaemon-0.14_1: .......... done [pkg.DaveG.ca] | | | `-- Installing libevent-2.1.12... [pkg.DaveG.ca] | | | `-- Extracting libevent-2.1.12: .......... done ===> Creating groups Creating group 'avahi' with gid '558' ===> Creating users Creating user 'avahi' with uid '558' [pkg.DaveG.ca] | | `-- Extracting avahi-app-0.8_6: .......... done [pkg.DaveG.ca] | | `-- Installing gnutls-3.8.12... [pkg.DaveG.ca] | | | `-- Installing gmp-6.3.0... [pkg.DaveG.ca] | | | `-- Extracting gmp-6.3.0: .......... done [pkg.DaveG.ca] | | | `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | | | `-- Installing libunistring-1.4.2... 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[pkg.DaveG.ca] | | `-- Extracting woff2-1.0.2_5: .......... done [pkg.DaveG.ca] | `-- Extracting webkit2-gtk_40-2.46.6_7: .......... done [pkg.DaveG.ca] `-- Extracting wx30-gtk3-3.0.5.1_7: .......... done [pkg.DaveG.ca] Extracting openbabel-3.1.1.178_6: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gdk-pixbuf-query-loaders.ucl Generating gdk-pixbuf modules cache ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: gtk-update-icon-cache.ucl Generating GTK icon cache for /usr/local/share/icons/hicolor Generating GTK icon cache for /usr/local/share/icons/Adwaita Generating GTK icon cache for /usr/local/share/icons/AdwaitaLegacy ==> Running trigger: glib-schemas.ucl Compiling glib schemas Warning: Schema ?org.gnome.system.locale? has path ?/system/locale/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy? has path ?/system/proxy/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy.http? has path ?/system/proxy/http/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy.https? has path ?/system/proxy/https/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy.ftp? has path ?/system/proxy/ftp/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy.socks? has path ?/system/proxy/socks/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. ==> Running trigger: shared-mime-info.ucl Building the Shared MIME-Info database cache ===== Message from boost-libs-1.89.0_2: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===== Message from freetype2-2.14.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from python311-3.11.15: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===== Message from wayland-1.24.0_2: -- Wayland requires XDG_RUNTIME_DIR to be defined to a path that will contain "wayland-%d" unix(4) sockets. This is usually handled by consolekit2 (via ck-launch-session) or pam_xdg (via login). ===== Message from libxkbcommon-1.13.1: -- If arrow keys don't work under X11 switch to legacy rules e.g., For sh/bash/ksh/zsh run and (optionally) add into ~/.profile: export XKB_DEFAULT_RULES=xorg For csh/tcsh run and (optionally) add into ~/.login: setenv XKB_DEFAULT_RULES xorg ===== Message from libsoup-2.74.3_1: -- libsoup can use NTLM authentication if it is compiled with the SMB option. To use it, you must install a port that provides NTLM, like net/samba412 or net/samba413. ===== Message from py311-boost-libs-1.89.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===== Message from gcc14-14.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from libjxl-0.11.2: -- Additional packages recommended for new users: - imlib2-jxl (e.g., feh, scrot) - kf5-kimageformats (e.g., nomacs, flameshot, skanlite) - gimp-jxl-plugin ===== Message from webkit2-gtk_40-2.46.6_7: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: libsoup 2 support scheduled for removal in 2.52: https://webkitgtk.org/2025/10/07/webkitgtk-soup2-deprecation.html. ===> libghemical-3.0.0_21 depends on executable: obabel - found ===> Returning to build of libghemical-3.0.0_21 ===> libghemical-3.0.0_21 depends on executable: intltool-update - not found ===> Installing existing package /packages/All/intltool-0.51.0_2.pkg [pkg.DaveG.ca] Installing intltool-0.51.0_2... [pkg.DaveG.ca] `-- Installing p5-XML-Parser-2.47... [pkg.DaveG.ca] `-- Extracting p5-XML-Parser-2.47: .......... done [pkg.DaveG.ca] Extracting intltool-0.51.0_2: .......... done ===> libghemical-3.0.0_21 depends on executable: intltool-update - found ===> Returning to build of libghemical-3.0.0_21 ===> libghemical-3.0.0_21 depends on executable: ld - found ===> libghemical-3.0.0_21 depends on executable: gfortran14 - found ===> libghemical-3.0.0_21 depends on package: gettext-runtime>=0.26 - found ===> libghemical-3.0.0_21 depends on package: gettext-tools>=0.26 - not found ===> Installing existing package /packages/All/gettext-tools-0.26.pkg [pkg.DaveG.ca] Installing gettext-tools-0.26... [pkg.DaveG.ca] `-- Installing libtextstyle-0.26... [pkg.DaveG.ca] `-- Extracting libtextstyle-0.26: .......... done [pkg.DaveG.ca] Extracting gettext-tools-0.26: .......... done ===> libghemical-3.0.0_21 depends on package: gettext-tools>=0.26 - found ===> Returning to build of libghemical-3.0.0_21 ===> libghemical-3.0.0_21 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [pkg.DaveG.ca] Installing gmake-4.4.1... [pkg.DaveG.ca] Extracting gmake-4.4.1: .......... done ===> libghemical-3.0.0_21 depends on package: gmake>=4.4.1 - found ===> Returning to build of libghemical-3.0.0_21 ===> libghemical-3.0.0_21 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-2.4.3,1.pkg [pkg.DaveG.ca] Installing pkgconf-2.4.3,1... [pkg.DaveG.ca] Extracting pkgconf-2.4.3,1: .......... done ===> libghemical-3.0.0_21 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of libghemical-3.0.0_21 ===> libghemical-3.0.0_21 depends on file: /usr/local/bin/as - found ===> libghemical-3.0.0_21 depends on package: xorgproto>=0 - found ===> libghemical-3.0.0_21 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc14 create symlink for gcc14 (world) create symlink for g++14 create symlink for g++14 (world) create symlink for cpp14 create symlink for cpp14 (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> libghemical-3.0.0_21 depends on file: /usr/local/bin/ccache - found ===> Returning to build of libghemical-3.0.0_21 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> libghemical-3.0.0_21 depends on shared library: libblas.so - not found ===> Installing existing package /packages/All/blas-3.12.1.pkg [pkg.DaveG.ca] Installing blas-3.12.1... [pkg.DaveG.ca] Extracting blas-3.12.1: ..... done ===> libghemical-3.0.0_21 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> Returning to build of libghemical-3.0.0_21 ===> libghemical-3.0.0_21 depends on shared library: libint.so - not found ===> Installing existing package /packages/All/libint-1.2.1.15.pkg [pkg.DaveG.ca] Installing libint-1.2.1.15... [pkg.DaveG.ca] Extracting libint-1.2.1.15: .......... done ===> libghemical-3.0.0_21 depends on shared library: libint.so - found (/usr/local/lib/libint.so) ===> Returning to build of libghemical-3.0.0_21 ===> libghemical-3.0.0_21 depends on shared library: libf2c.so - not found ===> Installing existing package /packages/All/f2c-20200916_1.pkg [pkg.DaveG.ca] Installing f2c-20200916_1... [pkg.DaveG.ca] Extracting f2c-20200916_1: .......... done ===> libghemical-3.0.0_21 depends on shared library: libf2c.so - found (/usr/local/lib/libf2c.so) ===> Returning to build of libghemical-3.0.0_21 ===> libghemical-3.0.0_21 depends on shared library: liblapack.so - not found ===> Installing existing package /packages/All/lapack-3.12.1.pkg [pkg.DaveG.ca] Installing lapack-3.12.1... [pkg.DaveG.ca] Extracting lapack-3.12.1: .......... done ===> libghemical-3.0.0_21 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> Returning to build of libghemical-3.0.0_21 ===> libghemical-3.0.0_21 depends on shared library: libmpqc.so - not found ===> Installing existing package /packages/All/mpqc-2.3.1_53.pkg [pkg.DaveG.ca] Installing mpqc-2.3.1_53... [pkg.DaveG.ca] `-- Installing graphviz-14.1.2... [pkg.DaveG.ca] | `-- Installing libXaw-1.0.16,2... [pkg.DaveG.ca] | | `-- Installing libXmu-1.1.4,1... [pkg.DaveG.ca] | | `-- Installing libXt-1.3.0,1... 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[pkg.DaveG.ca] | | `-- Extracting tcl86-8.6.17: .......... done [pkg.DaveG.ca] | `-- Extracting tk86-8.6.17: .......... done [pkg.DaveG.ca] `-- Extracting tk-wrapper-1.1_3: .. done [pkg.DaveG.ca] Extracting mpqc-2.3.1_53: .......... done ===== Message from ghostscript10-10.06.0_2: -- This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. ===== Message from tk-wrapper-1.1_3: -- You may wish to modify (or create) the configuration file: /usr/local/etc/wish.conf Sample configuration file is located at: /usr/local/etc/wish.conf.sample ===> libghemical-3.0.0_21 depends on shared library: libmpqc.so - found (/usr/local/lib/libmpqc.so) ===> Returning to build of libghemical-3.0.0_21 ===> libghemical-3.0.0_21 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> libghemical-3.0.0_21 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so) =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for libghemical-3.0.0_21 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/aclocal.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/configure configure: loading site script /usr/ports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... 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(cached) yes checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd15.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ld used by c++... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd15.0 ld.so checking how to hardcode library paths into programs... immediate checking for ar... /usr/local/bin/ar checking for sh... /bin/sh checking whether /usr/local/bin/gmake sets $(MAKE)... (cached) yes checking pkg-config is at least version 0.9.0... yes checking whether NLS is requested... yes checking for intltool >= 0.40.0... 0.51.0 found checking for intltool-update... /usr/local/bin/intltool-update checking for intltool-merge... /usr/local/bin/intltool-merge checking for intltool-extract... /usr/local/bin/intltool-extract checking for xgettext... /usr/local/bin/xgettext checking for msgmerge... /usr/local/bin/msgmerge checking for msgfmt... /usr/local/bin/msgfmt checking for gmsgfmt... /usr/local/bin/msgfmt checking for perl... /usr/local/bin/perl checking for perl >= 5.8.1... 5.42.1 checking for XML::Parser... ok checking for locale.h... (cached) yes checking for LC_MESSAGES... yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking for ngettext in libc... no checking for bindtextdomain in -lintl... yes checking for ngettext in -lintl... yes checking for dgettext in -lintl... yes checking for bind_textdomain_codeset... yes checking for msgfmt... (cached) /usr/local/bin/msgfmt checking for dcgettext... yes checking if msgfmt accepts -c... yes checking for gmsgfmt... (cached) /usr/local/bin/msgfmt checking for xgettext... (cached) /usr/local/bin/xgettext checking whether build environment is sane... yes checking for acos in -lm... yes checking for main in -lblas... yes checking for main in -llapack... yes checking for sc-config... /usr/local/bin/sc-config checking SC - version... yes checking GL/gl.h usability... yes checking GL/gl.h presence... yes checking for GL/gl.h... yes checking for cc option to accept ISO C99... none needed checking for cc option to accept ISO Standard C... (cached) none needed checking for inline... inline checking for an ANSI C-conforming const... yes checking for ANSI C header files... (cached) yes configure: build options: ^^^^^^^^^^^^^^ enable MPQC : yes enable MOPAC7 : no configure: creating ./config.status config.status: creating libghemical.pc config.status: creating Makefile config.status: creating bin/Makefile config.status: creating bin/amber/Makefile config.status: creating bin/builder/Makefile config.status: creating bin/param_mm/Makefile config.status: creating bin/param_mm/default/Makefile config.status: creating bin/param_mm/prmfit/Makefile config.status: creating bin/param_mm/tripos52/Makefile config.status: creating bin/param_sf/Makefile config.status: creating bin/param_sf/default/Makefile config.status: creating po/Makefile.in config.status: creating src/Makefile config.status: creating src/libghemicalconfig.h config.status: creating src/libghemical-features.h config.status: executing src/libghemicalconfig2.h commands config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing stamp.h commands config.status: executing po/stamp-it commands =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for libghemical-3.0.0_21 Making all in src gmake[1]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/src' /usr/local/bin/gmake all-am gmake[2]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/src' /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT atom.lo -MD -MP -MF .deps/atom.Tpo -c -o atom.lo atom.cpp /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT bond.lo -MD -MP -MF .deps/bond.Tpo -c -o bond.lo bond.cpp /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\""/usr/local/share/locale"\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT constraint.lo -MD -MP -MF .deps/constraint.Tpo -c -o constraint.lo constraint.cpp /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include 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-std=c++98 -MT eng1_mm.lo -MD -MP -MF .deps/eng1_mm.Tpo -c eng1_mm.cpp -fPIC -DPIC -o .libs/eng1_mm.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_mm_prmfit.lo -MD -MP -MF .deps/eng1_mm_prmfit.Tpo -c eng1_mm_prmfit.cpp -fPIC -DPIC -o .libs/eng1_mm_prmfit.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT intcrd.lo -MD -MP -MF .deps/intcrd.Tpo -c intcrd.cpp -fPIC -DPIC -o .libs/intcrd.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm_mpqc.lo -MD -MP -MF .deps/eng1_qm_mpqc.Tpo -c eng1_qm_mpqc.cpp -fPIC -DPIC -o .libs/eng1_qm_mpqc.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_mm_default.lo -MD -MP -MF .deps/eng1_mm_default.Tpo -c eng1_mm_default.cpp -fPIC -DPIC -o .libs/eng1_mm_default.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_sf.lo -MD -MP -MF .deps/eng1_sf.Tpo -c eng1_sf.cpp -fPIC -DPIC -o .libs/eng1_sf.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT tab_mm_default.lo -MD -MP -MF .deps/tab_mm_default.Tpo -c tab_mm_default.cpp -fPIC -DPIC -o .libs/tab_mm_default.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_sf_ua.lo -MD -MP -MF .deps/eng1_sf_ua.Tpo -c eng1_sf_ua.cpp -fPIC -DPIC -o .libs/eng1_sf_ua.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng2_qm_mm.lo -MD -MP -MF .deps/eng2_qm_mm.Tpo -c eng2_qm_mm.cpp -fPIC -DPIC -o .libs/eng2_qm_mm.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT tab_mm_tripos52.lo -MD -MP -MF .deps/tab_mm_tripos52.Tpo -c tab_mm_tripos52.cpp -fPIC -DPIC -o .libs/tab_mm_tripos52.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT resonance.lo -MD -MP -MF .deps/resonance.Tpo -c resonance.cpp -fPIC -DPIC -o .libs/resonance.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT notice.lo -MD -MP -MF .deps/notice.Tpo -c notice.cpp -fPIC -DPIC -o .libs/notice.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT pop_ana.lo -MD -MP -MF .deps/pop_ana.Tpo -c pop_ana.cpp -fPIC -DPIC -o .libs/pop_ana.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT moldyn.lo -MD -MP -MF .deps/moldyn.Tpo -c moldyn.cpp -fPIC -DPIC -o .libs/moldyn.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT conjgrad.lo -MD -MP -MF .deps/conjgrad.Tpo -c conjgrad.cpp -fPIC -DPIC -o .libs/conjgrad.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT geomopt.lo -MD -MP -MF .deps/geomopt.Tpo -c geomopt.cpp -fPIC -DPIC -o .libs/geomopt.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_sf_cg.lo -MD -MP -MF .deps/eng1_sf_cg.Tpo -c eng1_sf_cg.cpp -fPIC -DPIC -o .libs/eng1_sf_cg.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT sasaeval.lo -MD -MP -MF .deps/sasaeval.Tpo -c sasaeval.cpp -fPIC -DPIC -o .libs/sasaeval.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT tab_mm_prmfit.lo -MD -MP -MF .deps/tab_mm_prmfit.Tpo -c tab_mm_prmfit.cpp -fPIC -DPIC -o .libs/tab_mm_prmfit.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT utility.lo -MD -MP -MF .deps/utility.Tpo -c utility.cpp -o utility.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_sf_cg.lo -MD -MP -MF .deps/eng1_sf_cg.Tpo -c eng1_sf_cg.cpp -o eng1_sf_cg.o >/dev/null 2>&1 In file included from search.cpp:22: In file included from ./search.h:35: ./eng1_qm.h:128:148: warning: non-void function does not return a value [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ ./eng1_qm.h:129:135: warning: non-void function does not return a value [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ 2 warnings generated. In file included from eng1_qm.cpp:22: ./eng1_qm.h:128:148: warning: non-void function does not return a value [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ ./eng1_qm.h:129:135: warning: non-void function does not return a value [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ 2 warnings generated. libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT search.lo -MD -MP -MF .deps/search.Tpo -c search.cpp -o search.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT seqbuild.lo -MD -MP -MF .deps/seqbuild.Tpo -c seqbuild.cpp -o seqbuild.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm.lo -MD -MP -MF .deps/eng1_qm.Tpo -c eng1_qm.cpp -o eng1_qm.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_mm_tripos52.lo -MD -MP -MF .deps/eng1_mm_tripos52.Tpo -c eng1_mm_tripos52.cpp -o eng1_mm_tripos52.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_mm.lo -MD -MP -MF .deps/eng1_mm.Tpo -c eng1_mm.cpp -o eng1_mm.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_mm_prmfit.lo -MD -MP -MF .deps/eng1_mm_prmfit.Tpo -c eng1_mm_prmfit.cpp -o eng1_mm_prmfit.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT intcrd.lo -MD -MP -MF .deps/intcrd.Tpo -c intcrd.cpp -o intcrd.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT moldyn.lo -MD -MP -MF .deps/moldyn.Tpo -c moldyn.cpp -o moldyn.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT bond.lo -MD -MP -MF .deps/bond.Tpo -c bond.cpp -o bond.o >/dev/null 2>&1 eng1_sf.cpp:4104:21: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] 4104 | if ((charge2[n2] == 0.0)) continue; | ~~~~~~~~~~~~^~~~~~ eng1_sf.cpp:4104:21: note: remove extraneous parentheses around the comparison to silence this warning 4104 | if ((charge2[n2] == 0.0)) continue; | ~ ^ ~ eng1_sf.cpp:4104:21: note: use '=' to turn this equality comparison into an assignment 4104 | if ((charge2[n2] == 0.0)) continue; | ^~ | = 1 warning generated. libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT conjgrad.lo -MD -MP -MF .deps/conjgrad.Tpo -c conjgrad.cpp -o conjgrad.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT notice.lo -MD -MP -MF .deps/notice.Tpo -c notice.cpp -o notice.o >/dev/null 2>&1 In file included from eng2_qm_mm.cpp:22: In file included from ./eng2_qm_mm.h:28: ./eng1_qm.h:128:148: warning: non-void function does not return a value [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ ./eng1_qm.h:129:135: warning: non-void function does not return a value [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ In file included from eng2_qm_mm.cpp:22: ./eng2_qm_mm.h:127:148: warning: non-void function does not return a value [-Wreturn-type] 127 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ ./eng2_qm_mm.h:128:135: warning: non-void function does not return a value [-Wreturn-type] 128 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ 4 warnings generated. In file included from pop_ana.cpp:22: In file included from ./pop_ana.h:31: ./eng1_qm.h:128:148: warning: non-void function does not return a value [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ ./eng1_qm.h:129:135: warning: non-void function does not return a value [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ 2 warnings generated. libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng2_qm_mm.lo -MD -MP -MF .deps/eng2_qm_mm.Tpo -c eng2_qm_mm.cpp -o eng2_qm_mm.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT tab_mm_tripos52.lo -MD -MP -MF .deps/tab_mm_tripos52.Tpo -c tab_mm_tripos52.cpp -o tab_mm_tripos52.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT pop_ana.lo -MD -MP -MF .deps/pop_ana.Tpo -c pop_ana.cpp -o pop_ana.o >/dev/null 2>&1 mv -f .deps/eng1_mm_tripos52.Tpo .deps/eng1_mm_tripos52.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_sf.lo -MD -MP -MF .deps/eng1_sf.Tpo -c eng1_sf.cpp -o eng1_sf.o >/dev/null 2>&1 mv -f .deps/moldyn.Tpo .deps/moldyn.Plo mv -f .deps/eng1_sf_cg.Tpo .deps/eng1_sf_cg.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_sf_ua.lo -MD -MP -MF .deps/eng1_sf_ua.Tpo -c eng1_sf_ua.cpp -o eng1_sf_ua.o >/dev/null 2>&1 tab_mm_prmfit.cpp:597:9: warning: backslash and newline separated by space [-Wbackslash-newline-escape] 597 | // / \ | ^ 1 warning generated. mv -f .deps/intcrd.Tpo .deps/intcrd.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT resonance.lo -MD -MP -MF .deps/resonance.Tpo -c resonance.cpp -o resonance.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT sasaeval.lo -MD -MP -MF .deps/sasaeval.Tpo -c sasaeval.cpp -o sasaeval.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT tab_mm_prmfit.lo -MD -MP -MF .deps/tab_mm_prmfit.Tpo -c tab_mm_prmfit.cpp -o tab_mm_prmfit.o >/dev/null 2>&1 tab_mm_default.cpp:691:9: warning: backslash and newline separated by space [-Wbackslash-newline-escape] 691 | // / \ | ^ 1 warning generated. mv -f .deps/utility.Tpo .deps/utility.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm_mopac.lo -MD -MP -MF .deps/eng1_qm_mopac.Tpo -c eng1_qm_mopac.cpp -o eng1_qm_mopac.o >/dev/null 2>&1 mv -f .deps/notice.Tpo .deps/notice.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT tab_mm_default.lo -MD -MP -MF .deps/tab_mm_default.Tpo -c tab_mm_default.cpp -o tab_mm_default.o >/dev/null 2>&1 mv -f .deps/seqbuild.Tpo .deps/seqbuild.Plo mv -f .deps/search.Tpo .deps/search.Plo mv -f .deps/bond.Tpo .deps/bond.Plo mv -f .deps/eng2_qm_mm.Tpo .deps/eng2_qm_mm.Plo In file included from geomopt.cpp:22: In file included from ./geomopt.h:31: ./eng1_qm.h:128:148: warning: non-void function does not return a value [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ ./eng1_qm.h:129:135: warning: non-void function does not return a value [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ 2 warnings generated. mv -f .deps/conjgrad.Tpo .deps/conjgrad.Plo mv -f .deps/pop_ana.Tpo .deps/pop_ana.Plo mv -f .deps/eng1_qm.Tpo .deps/eng1_qm.Plo mv -f .deps/eng1_mm.Tpo .deps/eng1_mm.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT geomopt.lo -MD -MP -MF .deps/geomopt.Tpo -c geomopt.cpp -o geomopt.o >/dev/null 2>&1 mv -f .deps/tab_mm_tripos52.Tpo .deps/tab_mm_tripos52.Plo mv -f .deps/resonance.Tpo .deps/resonance.Plo mv -f .deps/eng1_qm_mopac.Tpo .deps/eng1_qm_mopac.Plo mv -f .deps/sasaeval.Tpo .deps/sasaeval.Plo mv -f .deps/geomopt.Tpo .deps/geomopt.Plo mv -f .deps/tab_mm_prmfit.Tpo .deps/tab_mm_prmfit.Plo mv -f .deps/eng1_sf.Tpo .deps/eng1_sf.Plo mv -f .deps/eng1_sf_ua.Tpo .deps/eng1_sf_ua.Plo atom.cpp:33:44: warning: conversion from string literal to 'char *' is deprecated [-Wc++11-compat-deprecated-writable-strings] 33 | element element::current_element = element("C"); | ^ 1 warning generated. libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT mfinder.lo -MD -MP -MF .deps/mfinder.Tpo -c mfinder.cpp -o mfinder.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT atom.lo -MD -MP -MF .deps/atom.Tpo -c atom.cpp -o atom.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT typerule.lo -MD -MP -MF .deps/typerule.Tpo -c typerule.cpp -o typerule.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT constraint.lo -MD -MP -MF .deps/constraint.Tpo -c constraint.cpp -o constraint.o >/dev/null 2>&1 In file included from eng1_qm_mpqc.cpp:22: In file included from ./eng1_qm_mpqc.h:32: ./eng1_qm.h:128:148: warning: non-void function does not return a value [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ ./eng1_qm.h:129:135: warning: non-void function does not return a value [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ 2 warnings generated. mv -f .deps/mfinder.Tpo .deps/mfinder.Plo mv -f .deps/typerule.Tpo .deps/typerule.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_qm_mpqc.lo -MD -MP -MF .deps/eng1_qm_mpqc.Tpo -c eng1_qm_mpqc.cpp -o eng1_qm_mpqc.o >/dev/null 2>&1 mv -f .deps/atom.Tpo .deps/atom.Plo mv -f .deps/eng1_qm_mpqc.Tpo .deps/eng1_qm_mpqc.Plo mv -f .deps/constraint.Tpo .deps/constraint.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT chn_info.lo -MD -MP -MF .deps/chn_info.Tpo -c chn_info.cpp -o chn_info.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT engine.lo -MD -MP -MF .deps/engine.Tpo -c engine.cpp -o engine.o >/dev/null 2>&1 mv -f .deps/engine.Tpo .deps/engine.Plo mv -f .deps/chn_info.Tpo .deps/chn_info.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT eng1_mm_default.lo -MD -MP -MF .deps/eng1_mm_default.Tpo -c eng1_mm_default.cpp -o eng1_mm_default.o >/dev/null 2>&1 mv -f .deps/eng1_mm_default.Tpo .deps/eng1_mm_default.Plo mv -f .deps/eng1_mm_prmfit.Tpo .deps/eng1_mm_prmfit.Plo In file included from model.cpp:31: ./eng1_qm.h:128:148: warning: non-void function does not return a value [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ ./eng1_qm.h:129:135: warning: non-void function does not return a value [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ In file included from model.cpp:35: ./eng2_qm_mm.h:127:148: warning: non-void function does not return a value [-Wreturn-type] 127 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ ./eng2_qm_mm.h:128:135: warning: non-void function does not return a value [-Wreturn-type] 128 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ model.cpp:320:1: warning: non-void function does not return a value in all control paths [-Wreturn-type] 320 | } | ^ model.cpp:1755:31: warning: logical not is only applied to the left hand side of this bitwise operator [-Wlogical-not-parentheses] 1755 | if (some_atoms_selected && (!(* it1).flags & ATOMFLAG_USER_SELECTED)) | ^ ~ model.cpp:1755:31: note: add parentheses after the '!' to evaluate the bitwise operator first 1755 | if (some_atoms_selected && (!(* it1).flags & ATOMFLAG_USER_SELECTED)) | ^ | ( ) model.cpp:1755:31: note: add parentheses around left hand side expression to silence this warning 1755 | if (some_atoms_selected && (!(* it1).flags & ATOMFLAG_USER_SELECTED)) | ^ | ( ) model.cpp:4441:82: warning: illegal character encoding in string literal [-Winvalid-source-encoding] 4441 | txts << "displacement " << b_tab[ac] << " nm^2 = " << (b_tab[ac] * 100.0) << " ^2 "; | ^~~~ 7 warnings generated. libtool: compile: c++ -DHAVE_CONFIG_H -I. -I../src -I/usr/local/include -isystem /usr/local/include -DLOCALE_DIR=\"/usr/local/share/locale\" -isystem /usr/local/include -I/usr/local/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -MT model.lo -MD -MP -MF .deps/model.Tpo -c model.cpp -o model.o >/dev/null 2>&1 mv -f .deps/model.Tpo .deps/model.Plo mv -f .deps/tab_mm_default.Tpo .deps/tab_mm_default.Plo /bin/sh ../libtool --tag=CXX --mode=link c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++98 -version-info 5:1:0 -lSCbasis -lSCcints -lSCclass -lSCcontainer -lSCdft -lSCgroup -lSCintv3 -lSCisosurf -lSCkeyval -lSCmbpt -lSCmbptr12 -lSCmisc -lSCmolecule -lSCoint3 -lSCoptimize -lSCoptions -lSCpsi -lSCref -lSCrender -lSCscf -lSCscmat -lSCsolvent -lSCstate -lSCsymmetry -lSCwfn -lgfortran -lpthread -lblas -llapack -Wl,-rpath=/usr/local/lib/gcc14 -L/usr/local/lib/gcc14 -o libghemical.la -rpath /usr/local/lib atom.lo bond.lo constraint.lo model.lo engine.lo typerule.lo utility.lo chn_info.lo seqbuild.lo mfinder.lo eng1_qm.lo eng1_qm_mpqc.lo eng1_qm_mopac.lo eng1_mm.lo eng1_mm_tripos52.lo tab_mm_tripos52.lo eng1_mm_default.lo tab_mm_default.lo eng1_mm_prmfit.lo tab_mm_prmfit.lo eng1_sf.lo eng1_sf_ua.lo eng1_sf_cg.lo eng2_qm_mm.lo notice.lo conjgrad.lo intcrd.lo search.lo geomopt.lo moldyn.lo pop_ana.lo sasaeval.lo resonance.lo -llapack -lblas -lm -L/usr/local/lib -L/usr/local/lib -lderiv -lr12 -lint -lfl -lm -ldl -L/usr/local/lib -lpthread -lblas -L/usr/local/lib/gcc14 -L/usr/local/lib -L/usr/local/lib/gcc14/gcc/x86_64-portbld-freebsd15.0/14.2.0 -L/usr/local/lib/gcc14/gcc/x86_64-portbld-freebsd15.0/14.2.0/../../../../../x86_64-portbld-freebsd15.0/lib -L/usr/local/lib/gcc14/gcc/x86_64-portbld-freebsd15.0/14.2.0/../../.. -lmpich -lgfortran -lm -lgcc_s -lquadmath -llapack -lblas -L/usr/local/lib/gcc14 -L/usr/local/lib -L/usr/local/lib/gcc14/gcc/x86_64-portbld-freebsd15.0/14.2.0 -L/usr/local/lib/gcc14/gcc/x86_64-portbld-freebsd15.0/14.2.0/../../../../../x86_64-portbld-freebsd15.0/lib -L/usr/local/lib/gcc14/gcc/x86_64-portbld-freebsd15.0/14.2.0/../../.. -lmpich -lgfortran -lm -lgcc_s -lquadmath libtool: link: c++ -shared -nostdlib /usr/lib/crti.o /usr/lib/crtbeginS.o .libs/atom.o .libs/bond.o .libs/constraint.o .libs/model.o .libs/engine.o .libs/typerule.o .libs/utility.o .libs/chn_info.o .libs/seqbuild.o .libs/mfinder.o .libs/eng1_qm.o .libs/eng1_qm_mpqc.o .libs/eng1_qm_mopac.o .libs/eng1_mm.o .libs/eng1_mm_tripos52.o .libs/tab_mm_tripos52.o .libs/eng1_mm_default.o .libs/tab_mm_default.o .libs/eng1_mm_prmfit.o .libs/tab_mm_prmfit.o .libs/eng1_sf.o .libs/eng1_sf_ua.o .libs/eng1_sf_cg.o .libs/eng2_qm_mm.o .libs/notice.o .libs/conjgrad.o .libs/intcrd.o .libs/search.o .libs/geomopt.o .libs/moldyn.o .libs/pop_ana.o .libs/sasaeval.o .libs/resonance.o -lSCbasis -lSCcints -lSCclass -lSCcontainer -lSCdft -lSCgroup -lSCintv3 -lSCisosurf -lSCkeyval -lSCmbpt -lSCmbptr12 -lSCmisc -lSCmolecule -lSCoint3 -lSCoptimize -lSCoptions -lSCpsi -lSCref -lSCrender -lSCscf -lSCscmat -lSCsolvent -lSCstate -lSCsymmetry -lSCwfn -L/usr/local/lib/gcc14 -L/usr/local/lib -lderiv -lr12 -lint -lfl -ldl -lpthread -L/usr/local/lib/gcc14/gcc/x86_64-portbld-freebsd15.0/14.2.0 -L/usr/local/lib/gcc14/gcc/x86_64-portbld-freebsd15.0/14.2.0/../../../../../x86_64-portbld-freebsd15.0/lib -L/usr/local/lib/gcc14/gcc/x86_64-portbld-freebsd15.0/14.2.0/../../.. -llapack -lblas -lmpich -lgfortran -lquadmath -L/usr/lib -lc++ -lm -lc -lgcc -lgcc_s /usr/lib/crtendS.o /usr/lib/crtn.o -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc14 -Wl,-soname -Wl,libghemical.so.5 -o .libs/libghemical.so.5.0.1 libtool: link: (cd ".libs" && rm -f "libghemical.so.5" && ln -s "libghemical.so.5.0.1" "libghemical.so.5") libtool: link: (cd ".libs" && rm -f "libghemical.so" && ln -s "libghemical.so.5.0.1" "libghemical.so") libtool: link: /usr/local/bin/ar cru .libs/libghemical.a atom.o bond.o constraint.o model.o engine.o typerule.o utility.o chn_info.o seqbuild.o mfinder.o eng1_qm.o eng1_qm_mpqc.o eng1_qm_mopac.o eng1_mm.o eng1_mm_tripos52.o tab_mm_tripos52.o eng1_mm_default.o tab_mm_default.o eng1_mm_prmfit.o tab_mm_prmfit.o eng1_sf.o eng1_sf_ua.o eng1_sf_cg.o eng2_qm_mm.o notice.o conjgrad.o intcrd.o search.o geomopt.o moldyn.o pop_ana.o sasaeval.o resonance.o /usr/local/bin/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: /usr/local/bin/ranlib .libs/libghemical.a libtool: link: ( cd ".libs" && rm -f "libghemical.la" && ln -s "../libghemical.la" "libghemical.la" ) gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/src' gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/src' Making all in bin gmake[1]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin' Making all in amber gmake[2]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/amber' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/amber' Making all in builder gmake[2]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/builder' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/builder' Making all in param_mm gmake[2]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm' Making all in default gmake[3]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/default' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/default' Making all in prmfit gmake[3]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/prmfit' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/prmfit' Making all in tripos52 gmake[3]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/tripos52' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/tripos52' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm' gmake[3]: Nothing to be done for 'all-am'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm' Making all in param_sf gmake[2]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_sf' Making all in default gmake[3]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_sf/default' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_sf/default' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_sf' gmake[3]: Nothing to be done for 'all-am'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_sf' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_sf' gmake[2]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin' gmake[2]: Nothing to be done for 'all-am'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin' gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin' Making all in po gmake[1]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/po' file=`echo de | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file de.po file=`echo fi | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file fi.po file=`echo mk | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file mk.po file=`echo pt_BR | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file pt_BR.po file=`echo ru | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file ru.po file=`echo sq | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/local/bin/msgfmt -o $file sq.po gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/po' gmake[1]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0' gmake[1]: Nothing to be done for 'all-am'. gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0' =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> libghemical-3.0.0_21 depends on executable: gfortran14 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for libghemical-3.0.0_21 ===> Generating temporary packing list /usr/local/bin/gmake INSTALL_PROGRAM="/bin/sh /wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/install-sh -c -s" \ install_sh_PROGRAM="/bin/sh /wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/install-sh -c -s" INSTALL_STRIP_FLAG=-s \ `test -z 'strip' || \ echo "INSTALL_PROGRAM_ENV=STRIPPROG='strip'"` install gmake[1]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0' Making install in src gmake[2]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/src' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/src' test -z "/usr/local/lib" || /bin/mkdir -p "/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/lib" /bin/sh ../libtool --mode=install /usr/bin/install -c -s libghemical.la '/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libghemical.so.5.0.1 /wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/lib/libghemical.so.5.0.1 libtool: install: strip --strip-unneeded /wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/lib/libghemical.so.5.0.1 libtool: install: (cd /wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/lib && { ln -s -f libghemical.so.5.0.1 libghemical.so.5 || { rm -f libghemical.so.5 && ln -s libghemical.so.5.0.1 libghemical.so.5; }; }) libtool: install: (cd /wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/lib && { ln -s -f libghemical.so.5.0.1 libghemical.so || { rm -f libghemical.so && ln -s libghemical.so.5.0.1 libghemical.so; }; }) libtool: install: /usr/bin/install -c .libs/libghemical.lai /wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/lib/libghemical.la libtool: install: /usr/bin/install -c .libs/libghemical.a /wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/lib/libghemical.a libtool: install: strip --strip-debug /wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/lib/libghemical.a libtool: install: chmod 644 /wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/lib/libghemical.a libtool: install: /usr/local/bin/ranlib /wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/lib/libghemical.a libtool: install: warning: remember to run `libtool --finish /usr/local/lib' test -z "/usr/local/include/ghemical" || /bin/mkdir -p "/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/include/ghemical" install -m 0644 libghemicaldefine.h libghemical-features.h local_i18n.h typedef.h v3d.h atom.h bond.h constraint.h model.h engine.h typerule.h utility.h chn_info.h seqbuild.h mfinder.h eng1_qm.h eng1_qm_mpqc.h eng1_qm_mopac.h eng1_mm.h eng1_mm_tripos52.h tab_mm_tripos52.h eng1_mm_default.h tab_mm_default.h eng1_mm_prmfit.h tab_mm_prmfit.h eng1_sf.h eng1_sf_ua.h eng1_sf_cg.h eng2_qm_mm.h notice.h conjgrad.h intcrd.h search.h geomopt.h moldyn.h pop_ana.h sasaeval.h resonance.h '/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/include/ghemical' gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/src' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/src' Making install in bin gmake[2]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin' Making install in amber gmake[3]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/amber' gmake[4]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/amber' gmake[4]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/amber" || /bin/mkdir -p "/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/libghemical/3.0.0/amber" install -m 0644 all_amino94_MOD.in all_aminoct94.in all_aminont94.in all_nuc94_MOD.in parm99_frcmod_ff99SB.dat '/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/libghemical/3.0.0/amber' gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/amber' gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/amber' Making install in builder gmake[3]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/builder' gmake[4]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/builder' gmake[4]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/builder" || /bin/mkdir -p "/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/libghemical/3.0.0/builder" install -m 0644 amino.txt nucleic.txt '/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/libghemical/3.0.0/builder' gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/builder' gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/builder' Making install in param_mm gmake[3]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm' Making install in default gmake[4]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/default' gmake[5]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/default' gmake[5]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/param_mm/default" || /bin/mkdir -p "/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/libghemical/3.0.0/param_mm/default" install -m 0644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt '/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/libghemical/3.0.0/param_mm/default' gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/default' gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/default' Making install in prmfit gmake[4]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/prmfit' gmake[5]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/prmfit' gmake[5]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/param_mm/prmfit" || /bin/mkdir -p "/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/libghemical/3.0.0/param_mm/prmfit" install -m 0644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt '/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/libghemical/3.0.0/param_mm/prmfit' gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/prmfit' gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/prmfit' Making install in tripos52 gmake[4]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/tripos52' gmake[5]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/tripos52' gmake[5]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/param_mm/tripos52" || /bin/mkdir -p "/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/libghemical/3.0.0/param_mm/tripos52" install -m 0644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt parameters5.txt '/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/libghemical/3.0.0/param_mm/tripos52' gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/tripos52' gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm/tripos52' gmake[4]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm' gmake[5]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm' gmake[5]: Nothing to be done for 'install-exec-am'. gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm' gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm' gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_mm' Making install in param_sf gmake[3]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_sf' Making install in default gmake[4]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_sf/default' gmake[5]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_sf/default' gmake[5]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/share/libghemical/3.0.0/param_sf/default" || /bin/mkdir -p "/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/libghemical/3.0.0/param_sf/default" install -m 0644 loopdip.txt looptor.txt nonbonded.txt '/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/libghemical/3.0.0/param_sf/default' gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_sf/default' gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_sf/default' gmake[4]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_sf' gmake[5]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_sf' gmake[5]: Nothing to be done for 'install-exec-am'. gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_sf' gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_sf' gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin/param_sf' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin' gmake[4]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin' gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/bin' Making install in po gmake[2]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/po' linguas="de fi mk pt_BR ru sq "; \ for lang in $linguas; do \ dir=/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/locale/$lang/LC_MESSAGES; \ /bin/sh /wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/install-sh -d $dir; \ if test -r $lang.gmo; then \ install -m 0644 $lang.gmo $dir/libghemical.mo; \ echo "installing $lang.gmo as $dir/libghemical.mo"; \ else \ install -m 0644 ./$lang.gmo $dir/libghemical.mo; \ echo "installing ./$lang.gmo as" \ "$dir/libghemical.mo"; \ fi; \ if test -r $lang.gmo.m; then \ install -m 0644 $lang.gmo.m $dir/libghemical.mo.m; \ echo "installing $lang.gmo.m as $dir/libghemical.mo.m"; \ else \ if test -r ./$lang.gmo.m ; then \ install -m 0644 ./$lang.gmo.m \ $dir/libghemical.mo.m; \ echo "installing ./$lang.gmo.m as" \ "$dir/libghemical.mo.m"; \ else \ true; \ fi; \ fi; \ done installing de.gmo as /wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/locale/de/LC_MESSAGES/libghemical.mo installing fi.gmo as /wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/locale/fi/LC_MESSAGES/libghemical.mo installing mk.gmo as /wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/locale/mk/LC_MESSAGES/libghemical.mo installing pt_BR.gmo as /wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/locale/pt_BR/LC_MESSAGES/libghemical.mo installing ru.gmo as /wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/locale/ru/LC_MESSAGES/libghemical.mo installing sq.gmo as /wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/share/locale/sq/LC_MESSAGES/libghemical.mo gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/po' gmake[2]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0' gmake[3]: Nothing to be done for 'install-exec-am'. test -z "/usr/local/libdata/pkgconfig" || /bin/mkdir -p "/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/libdata/pkgconfig" install -m 0644 libghemical.pc '/wrkdirs/usr/ports/science/libghemical/work/stage/usr/local/libdata/pkgconfig' gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0' gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-03-18T17:41:24+0000' 'PKG_NOTE_ports_top_git_hash=8c988f802ea2' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=6cce1f5b223a' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for libghemical-3.0.0_21 ===> Building libghemical-3.0.0_21 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for libghemical-3.0.0_21 build of science/libghemical | libghemical-3.0.0_21 ended at Wed Mar 18 13:43:05 EDT 2026 build time: 00:01:41