=>> Building biology/igv build started at Tue Jan 20 08:03:27 EST 2026 port directory: /usr/ports/biology/igv package name: igv-2.16.0_1 building for: FreeBSD pkg.DaveG.ca 14.3-RELEASE-p7 FreeBSD 14.3-RELEASE-p7 1403000 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2394 Jan 14 2025 /usr/ports/biology/igv/Makefile Ports top last git commit: 076a295eb33c Ports top unclean checkout: no Port dir last git commit: 0835676e361b Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1403000 Job Id: 14 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1403000 UNAME_v=FreeBSD 14.3-RELEASE-p7 1403000 UNAME_r=14.3-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/14/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_14_3_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/igv/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/igv/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/igv/work/.cache HOME=/wrkdirs/usr/ports/biology/igv/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/igv/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/igv/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- GRADLE_USER_HOME=/wrkdirs/usr/ports/biology/igv/work JAVA_HOME=/usr/local/openjdk11 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/igv/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/igv/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/igv/work/.cache HOME=/wrkdirs/usr/ports/biology/igv/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/igv/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/igv/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=14.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/igv" EXAMPLESDIR="share/examples/igv" DATADIR="share/igv" WWWDIR="www/igv" ETCDIR="etc/igv" --End PLIST_SUB-- --SUB_LIST-- JAVA_HOME=/usr/local/openjdk11 JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="11" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/igv DOCSDIR=/usr/local/share/doc/igv EXAMPLESDIR=/usr/local/share/examples/igv WWWDIR=/usr/local/www/igv ETCDIR=/usr/local/etc/igv --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> igv-2.16.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.5.1.pkg [pkg.DaveG.ca] Installing pkg-2.5.1... [pkg.DaveG.ca] Extracting pkg-2.5.1: .......... done ===> igv-2.16.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of igv-2.16.0_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by igv-2.16.0_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by igv-2.16.0_1 for building => SHA256 Checksum OK for igv-2.16.0/tools.png. => SHA256 Checksum OK for igv-2.16.0/igv-2.16.0-deps.tar.gz. => SHA256 Checksum OK for igv-2.16.0/igvteam-igv-v2.16.0_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by igv-2.16.0_1 for building ===> Extracting for igv-2.16.0_1 => SHA256 Checksum OK for igv-2.16.0/tools.png. => SHA256 Checksum OK for igv-2.16.0/igv-2.16.0-deps.tar.gz. => SHA256 Checksum OK for igv-2.16.0/igvteam-igv-v2.16.0_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for igv-2.16.0_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> igv-2.16.0_1 depends on package: openjfx14>0 - not found ===> Installing existing package /packages/All/openjfx14-14.0.2.1+1_18.pkg [pkg.DaveG.ca] Installing openjfx14-14.0.2.1+1_18... [pkg.DaveG.ca] `-- Installing alsa-lib-1.2.14... [pkg.DaveG.ca] `-- Extracting alsa-lib-1.2.14: .......... done [pkg.DaveG.ca] `-- Installing at-spi2-core-2.56.7... [pkg.DaveG.ca] | `-- Installing dbus-1.16.2_4,1... [pkg.DaveG.ca] | | `-- Installing expat-2.7.3... [pkg.DaveG.ca] | | `-- Extracting expat-2.7.3: .......... done [pkg.DaveG.ca] | | `-- Installing libICE-1.1.2,1... [pkg.DaveG.ca] | | `-- Extracting libICE-1.1.2,1: .......... done [pkg.DaveG.ca] | | `-- Installing libSM-1.2.6,1... [pkg.DaveG.ca] | | `-- Extracting libSM-1.2.6,1: ........ done [pkg.DaveG.ca] | | `-- Installing libX11-1.8.12,1... [pkg.DaveG.ca] | | `-- Installing libxcb-1.17.0... [pkg.DaveG.ca] | | | `-- Installing libXau-1.0.12... [pkg.DaveG.ca] | | | `-- Extracting libXau-1.0.12: .......... done [pkg.DaveG.ca] | | | `-- Installing libXdmcp-1.1.5... [pkg.DaveG.ca] | | | `-- Installing xorgproto-2024.1... [pkg.DaveG.ca] | | | `-- Extracting xorgproto-2024.1: .......... done [pkg.DaveG.ca] | | | `-- Extracting libXdmcp-1.1.5: ...... done [pkg.DaveG.ca] | | `-- Extracting libxcb-1.17.0: .......... done [pkg.DaveG.ca] | | `-- Extracting libX11-1.8.12,1: .......... done [pkg.DaveG.ca] | | `-- Installing libxml2-2.14.6... [pkg.DaveG.ca] | | `-- Installing readline-8.3.3... [pkg.DaveG.ca] | | | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | | | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | | `-- Extracting readline-8.3.3: .......... done [pkg.DaveG.ca] | | `-- Extracting libxml2-2.14.6: .......... done ===> Creating groups Creating group 'messagebus' with gid '556' ===> Creating users Creating user 'messagebus' with uid '556' [pkg.DaveG.ca] | `-- Extracting dbus-1.16.2_4,1: ......... done [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] | `-- Installing glib-2.84.4,2... [pkg.DaveG.ca] | | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | | `-- Installing libiconv-1.18_1... [pkg.DaveG.ca] | | `-- Extracting libiconv-1.18_1: .......... done [pkg.DaveG.ca] | | `-- Installing libinotify-20240724_3... [pkg.DaveG.ca] | | `-- Extracting libinotify-20240724_3: .......... done [pkg.DaveG.ca] | | `-- Installing pcre2-10.47_1... [pkg.DaveG.ca] | | `-- Extracting pcre2-10.47_1: .......... done [pkg.DaveG.ca] | | `-- Installing py311-packaging-25.0... [pkg.DaveG.ca] | | `-- Installing python311-3.11.14... [pkg.DaveG.ca] | | | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | | | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | | `-- Extracting python311-3.11.14: .......... done [pkg.DaveG.ca] | | `-- Extracting py311-packaging-25.0: .......... done [pkg.DaveG.ca] | `-- Extracting glib-2.84.4,2: .......... done [pkg.DaveG.ca] | `-- Installing gsettings-desktop-schemas-47.1_2... [pkg.DaveG.ca] | `-- Extracting gsettings-desktop-schemas-47.1_2: .......... done [pkg.DaveG.ca] | `-- Installing libXi-1.8.2,1... [pkg.DaveG.ca] | | `-- Installing libXext-1.3.6,1... [pkg.DaveG.ca] | | `-- Extracting libXext-1.3.6,1: .......... done [pkg.DaveG.ca] | | `-- Installing libXfixes-6.0.1... [pkg.DaveG.ca] | | `-- Extracting libXfixes-6.0.1: ....... done [pkg.DaveG.ca] | `-- Extracting libXi-1.8.2,1: .......... done [pkg.DaveG.ca] | `-- Installing libXtst-1.2.5... [pkg.DaveG.ca] | `-- Extracting libXtst-1.2.5: .......... done [pkg.DaveG.ca] `-- Extracting at-spi2-core-2.56.7: .......... done [pkg.DaveG.ca] `-- Installing cairo-1.18.2,3... [pkg.DaveG.ca] | `-- Installing fontconfig-2.17.1,1... [pkg.DaveG.ca] | | `-- Installing freetype2-2.14.1... [pkg.DaveG.ca] | | `-- Installing brotli-1.2.0,1... [pkg.DaveG.ca] | | `-- Extracting brotli-1.2.0,1: .......... done [pkg.DaveG.ca] | | `-- Installing png-1.6.53... [pkg.DaveG.ca] | | `-- Extracting png-1.6.53: .......... done [pkg.DaveG.ca] | | `-- Extracting freetype2-2.14.1: .......... done [pkg.DaveG.ca] | `-- Extracting fontconfig-2.17.1,1: .......... done [pkg.DaveG.ca] | `-- Installing libXrender-0.9.12... [pkg.DaveG.ca] | `-- Extracting libXrender-0.9.12: ....... done [pkg.DaveG.ca] | `-- Installing lzo2-2.10_1... [pkg.DaveG.ca] | `-- Extracting lzo2-2.10_1: .......... done [pkg.DaveG.ca] | `-- Installing pixman-0.46.2... [pkg.DaveG.ca] | `-- Extracting pixman-0.46.2: ...... done [pkg.DaveG.ca] `-- Extracting cairo-1.18.2,3: .......... done [pkg.DaveG.ca] `-- Installing ffmpeg4-4.4.4_28... [pkg.DaveG.ca] | `-- Installing aom-3.13.1... [pkg.DaveG.ca] | | `-- Installing vmaf-3.0.0... [pkg.DaveG.ca] | | `-- Extracting vmaf-3.0.0: .......... done [pkg.DaveG.ca] | `-- Extracting aom-3.13.1: .......... done [pkg.DaveG.ca] | `-- Installing dav1d-1.5.2... [pkg.DaveG.ca] | `-- Extracting dav1d-1.5.2: .......... done [pkg.DaveG.ca] | `-- Installing gmp-6.3.0... [pkg.DaveG.ca] | `-- Extracting gmp-6.3.0: .......... done [pkg.DaveG.ca] | `-- Installing gnutls-3.8.11... [pkg.DaveG.ca] | | `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | | `-- Installing libunistring-1.4.1... [pkg.DaveG.ca] | | `-- Extracting libunistring-1.4.1: .......... done [pkg.DaveG.ca] | | `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] | | `-- Installing libtasn1-4.21.0... [pkg.DaveG.ca] | | `-- Extracting libtasn1-4.21.0: .......... done [pkg.DaveG.ca] | | `-- Installing nettle-3.10.2... [pkg.DaveG.ca] | | `-- Extracting nettle-3.10.2: .......... done [pkg.DaveG.ca] | | `-- Installing p11-kit-0.26.0... [pkg.DaveG.ca] | | `-- Extracting p11-kit-0.26.0: .......... done [pkg.DaveG.ca] | | `-- Installing zstd-1.5.7_1... [pkg.DaveG.ca] | | `-- Extracting zstd-1.5.7_1: .......... done [pkg.DaveG.ca] | `-- Extracting gnutls-3.8.11: .......... done [pkg.DaveG.ca] | `-- Installing lame-3.100_5... [pkg.DaveG.ca] | `-- Extracting lame-3.100_5: .......... done [pkg.DaveG.ca] | `-- Installing libass-0.17.4... [pkg.DaveG.ca] | | `-- Installing fribidi-1.0.16... [pkg.DaveG.ca] | | `-- Extracting fribidi-1.0.16: .......... done [pkg.DaveG.ca] | | `-- Installing harfbuzz-12.3.0... [pkg.DaveG.ca] | | `-- Installing graphite2-1.3.14... [pkg.DaveG.ca] | | `-- Extracting graphite2-1.3.14: .......... done [pkg.DaveG.ca] | | `-- Extracting harfbuzz-12.3.0: .......... done [pkg.DaveG.ca] | | `-- Installing libunibreak-6.1,1... [pkg.DaveG.ca] | | `-- Extracting libunibreak-6.1,1: .......... done [pkg.DaveG.ca] | `-- Extracting libass-0.17.4: ....... done [pkg.DaveG.ca] | `-- Installing libdrm-2.4.131,1... [pkg.DaveG.ca] | | `-- Installing libpciaccess-0.18.1_1... [pkg.DaveG.ca] | | `-- Installing hwdata-0.403,1... [pkg.DaveG.ca] | | `-- Extracting hwdata-0.403,1: ...... done [pkg.DaveG.ca] | | `-- Extracting libpciaccess-0.18.1_1: ..... done [pkg.DaveG.ca] | `-- Extracting libdrm-2.4.131,1: .......... done [pkg.DaveG.ca] | `-- Installing libv4l-1.23.0_5... [pkg.DaveG.ca] | | `-- Installing jpeg-turbo-3.1.3... [pkg.DaveG.ca] | | `-- Extracting jpeg-turbo-3.1.3: .......... done [pkg.DaveG.ca] | | `-- Installing libudev-devd-0.6.0... [pkg.DaveG.ca] | | `-- Extracting libudev-devd-0.6.0: ..... done [pkg.DaveG.ca] | `-- Extracting libv4l-1.23.0_5: .......... done [pkg.DaveG.ca] | `-- Installing libva-2.23.0... [pkg.DaveG.ca] | | `-- Installing libglvnd-1.7.0... [pkg.DaveG.ca] | | `-- Extracting libglvnd-1.7.0: .......... done [pkg.DaveG.ca] | | `-- Installing wayland-1.24.0_2... [pkg.DaveG.ca] | | `-- Installing libepoll-shim-0.0.20240608... [pkg.DaveG.ca] | | `-- Extracting libepoll-shim-0.0.20240608: .......... done [pkg.DaveG.ca] | | `-- Extracting wayland-1.24.0_2: .......... done [pkg.DaveG.ca] | `-- Extracting libva-2.23.0: .......... done [pkg.DaveG.ca] | `-- Installing libvdpau-1.5... [pkg.DaveG.ca] | `-- Extracting libvdpau-1.5: .......... done [pkg.DaveG.ca] | `-- Installing libvorbis-1.3.7_2,3... [pkg.DaveG.ca] | | `-- Installing libogg-1.3.6,4... [pkg.DaveG.ca] | | `-- Extracting libogg-1.3.6,4: .......... done [pkg.DaveG.ca] | `-- Extracting libvorbis-1.3.7_2,3: .......... done [pkg.DaveG.ca] | `-- Installing libvpx-1.15.2... [pkg.DaveG.ca] | `-- Extracting libvpx-1.15.2: .......... done [pkg.DaveG.ca] | `-- Installing libx264-0.164.3095... [pkg.DaveG.ca] | `-- Extracting libx264-0.164.3095: ...... done [pkg.DaveG.ca] | `-- Installing opus-1.6.1... [pkg.DaveG.ca] | `-- Extracting opus-1.6.1: .......... done [pkg.DaveG.ca] | `-- Installing svt-av1-3.1.2... [pkg.DaveG.ca] | `-- Extracting svt-av1-3.1.2: .......... done [pkg.DaveG.ca] | `-- Installing webp-1.6.0... [pkg.DaveG.ca] | | `-- Installing giflib-5.2.2... [pkg.DaveG.ca] | | `-- Extracting giflib-5.2.2: .......... done [pkg.DaveG.ca] | | `-- Installing tiff-4.7.1... [pkg.DaveG.ca] | | `-- Installing jbigkit-2.1_3... [pkg.DaveG.ca] | | `-- Extracting jbigkit-2.1_3: .......... done [pkg.DaveG.ca] | | `-- Installing lerc-4.0.0... [pkg.DaveG.ca] | | `-- Extracting lerc-4.0.0: ..... done [pkg.DaveG.ca] | | `-- Installing libdeflate-1.25... [pkg.DaveG.ca] | | `-- Extracting libdeflate-1.25: .......... done [pkg.DaveG.ca] | | `-- Extracting tiff-4.7.1: .......... done [pkg.DaveG.ca] | `-- Extracting webp-1.6.0: .......... done [pkg.DaveG.ca] | `-- Installing x265-4.1... [pkg.DaveG.ca] | `-- Extracting x265-4.1: .......... done [pkg.DaveG.ca] `-- Extracting ffmpeg4-4.4.4_28: .......... done [pkg.DaveG.ca] `-- Installing gdk-pixbuf2-2.44.1... [pkg.DaveG.ca] | `-- Installing shared-mime-info-2.4_2... [pkg.DaveG.ca] | `-- Extracting shared-mime-info-2.4_2: ......... done [pkg.DaveG.ca] `-- Extracting gdk-pixbuf2-2.44.1: .......... done [pkg.DaveG.ca] `-- Installing gtk2-2.24.33_1... [pkg.DaveG.ca] | `-- Installing cups-2.4.16... [pkg.DaveG.ca] | | `-- Installing avahi-app-0.8_6... [pkg.DaveG.ca] | | `-- Installing dbus-glib-0.114... [pkg.DaveG.ca] | | `-- Extracting dbus-glib-0.114: .......... done [pkg.DaveG.ca] | | `-- Installing gdbm-1.26... [pkg.DaveG.ca] | | `-- Extracting gdbm-1.26: .......... done [pkg.DaveG.ca] | | `-- Installing gnome_subr-1.0... [pkg.DaveG.ca] | | `-- Extracting gnome_subr-1.0: . done [pkg.DaveG.ca] | | `-- Installing libdaemon-0.14_1... [pkg.DaveG.ca] | | `-- Extracting libdaemon-0.14_1: .......... done [pkg.DaveG.ca] | | `-- Installing libevent-2.1.12... [pkg.DaveG.ca] | | `-- Extracting libevent-2.1.12: .......... done ===> Creating groups Creating group 'avahi' with gid '558' ===> Creating users Creating user 'avahi' with uid '558' [pkg.DaveG.ca] | | `-- Extracting avahi-app-0.8_6: .......... done [pkg.DaveG.ca] | | `-- Installing libpaper-1.1.28_1... [pkg.DaveG.ca] | | `-- Extracting libpaper-1.1.28_1: .......... done ===> Creating groups Creating group 'cups' with gid '193' ===> Creating users Creating user 'cups' with uid '193' [pkg.DaveG.ca] | `-- Extracting cups-2.4.16: .......... done [pkg.DaveG.ca] | `-- Installing gtk-update-icon-cache-3.24.42... [pkg.DaveG.ca] | `-- Extracting gtk-update-icon-cache-3.24.42: .......... done [pkg.DaveG.ca] | `-- Installing hicolor-icon-theme-0.18... [pkg.DaveG.ca] | `-- Extracting hicolor-icon-theme-0.18: . done [pkg.DaveG.ca] | `-- Installing libXcomposite-0.4.6_1,1... [pkg.DaveG.ca] | `-- Extracting libXcomposite-0.4.6_1,1: .......... done [pkg.DaveG.ca] | `-- Installing libXcursor-1.2.3... [pkg.DaveG.ca] | `-- Extracting libXcursor-1.2.3: .......... done [pkg.DaveG.ca] | `-- Installing libXdamage-1.1.6... [pkg.DaveG.ca] | `-- Extracting libXdamage-1.1.6: ...... done [pkg.DaveG.ca] | `-- Installing libXinerama-1.1.5,1... [pkg.DaveG.ca] | `-- Extracting libXinerama-1.1.5,1: .......... done [pkg.DaveG.ca] | `-- Installing libXrandr-1.5.4... [pkg.DaveG.ca] | `-- Extracting libXrandr-1.5.4: .......... done [pkg.DaveG.ca] | `-- Installing pango-1.56.4... [pkg.DaveG.ca] | | `-- Installing libXft-2.3.8... [pkg.DaveG.ca] | | `-- Extracting libXft-2.3.8: .......... done [pkg.DaveG.ca] | | `-- Installing libthai-0.1.30... [pkg.DaveG.ca] | | `-- Installing libdatrie-0.2.14_1... [pkg.DaveG.ca] | | `-- Extracting libdatrie-0.2.14_1: .......... done [pkg.DaveG.ca] | | `-- Extracting libthai-0.1.30: .......... done [pkg.DaveG.ca] | `-- Extracting pango-1.56.4: .......... done [pkg.DaveG.ca] `-- Extracting gtk2-2.24.33_1: .......... done [pkg.DaveG.ca] `-- Installing gtk3-3.24.51... [pkg.DaveG.ca] | `-- Installing adwaita-icon-theme-47.0... [pkg.DaveG.ca] | | `-- Installing adwaita-icon-theme-legacy-46.2... [pkg.DaveG.ca] | | `-- Extracting adwaita-icon-theme-legacy-46.2: .......... done [pkg.DaveG.ca] | `-- Extracting adwaita-icon-theme-47.0: .......... done [pkg.DaveG.ca] | `-- Installing colord-1.4.8... [pkg.DaveG.ca] | | `-- Installing lcms2-2.17... [pkg.DaveG.ca] | | `-- Extracting lcms2-2.17: .......... done [pkg.DaveG.ca] | | `-- Installing libgudev-237... [pkg.DaveG.ca] | | `-- Extracting libgudev-237: .......... done [pkg.DaveG.ca] | | `-- Installing libgusb-0.4.9_1... [pkg.DaveG.ca] | | `-- Installing json-glib-1.10.8... [pkg.DaveG.ca] | | | `-- Installing gobject-introspection-1.84.0,1... [pkg.DaveG.ca] | | | `-- Extracting gobject-introspection-1.84.0,1: .......... done [pkg.DaveG.ca] | | `-- Extracting json-glib-1.10.8: .......... done [pkg.DaveG.ca] | | `-- Extracting libgusb-0.4.9_1: .......... done [pkg.DaveG.ca] | | `-- Installing polkit-127... [pkg.DaveG.ca] | | `-- Installing duktape-lib-2.7.0_1... [pkg.DaveG.ca] | | `-- Extracting duktape-lib-2.7.0_1: ...... done ===> Creating groups Creating group 'polkitd' with gid '565' ===> Creating users Creating user 'polkitd' with uid '565' [pkg.DaveG.ca] | | `-- Extracting polkit-127: ......... done [pkg.DaveG.ca] | | `-- Installing sqlite3-3.50.4_2,1... [pkg.DaveG.ca] | | `-- Installing libedit-3.1.20251016_1,1... [pkg.DaveG.ca] | | `-- Extracting libedit-3.1.20251016_1,1: .......... done [pkg.DaveG.ca] | | `-- Extracting sqlite3-3.50.4_2,1: .......... done ===> Creating groups Creating group 'colord' with gid '970' ===> Creating users Creating user 'colord' with uid '970' [pkg.DaveG.ca] | `-- Extracting colord-1.4.8: .......... done [pkg.DaveG.ca] | `-- Installing libepoxy-1.5.10... [pkg.DaveG.ca] | `-- Extracting libepoxy-1.5.10: .......... done [pkg.DaveG.ca] | `-- Installing librsvg2-rust-2.61.3... [pkg.DaveG.ca] | `-- Extracting librsvg2-rust-2.61.3: .......... done [pkg.DaveG.ca] | `-- Installing libxkbcommon-1.13.1... [pkg.DaveG.ca] | | `-- Installing xkeyboard-config-2.41_4... [pkg.DaveG.ca] | | `-- Extracting xkeyboard-config-2.41_4: .......... done [pkg.DaveG.ca] | `-- Extracting libxkbcommon-1.13.1: .......... done [pkg.DaveG.ca] `-- Extracting gtk3-3.24.51: .......... done [pkg.DaveG.ca] `-- Installing icu-76.1,1... [pkg.DaveG.ca] `-- Extracting icu-76.1,1: .......... done [pkg.DaveG.ca] `-- Installing libXt-1.3.0,1... [pkg.DaveG.ca] `-- Extracting libXt-1.3.0,1: .......... done [pkg.DaveG.ca] `-- Installing libXxf86vm-1.1.6... [pkg.DaveG.ca] `-- Extracting libXxf86vm-1.1.6: .......... done [pkg.DaveG.ca] `-- Installing libxslt-1.1.43_1... [pkg.DaveG.ca] | `-- Installing libgcrypt-1.11.2... [pkg.DaveG.ca] | | `-- Installing libgpg-error-1.58... [pkg.DaveG.ca] | | `-- Extracting libgpg-error-1.58: .......... done [pkg.DaveG.ca] | `-- Extracting libgcrypt-1.11.2: .......... done [pkg.DaveG.ca] `-- Extracting libxslt-1.1.43_1: .......... done [pkg.DaveG.ca] `-- Installing openjdk11-11.0.29+7.1_1... [pkg.DaveG.ca] | `-- Installing javavmwrapper-2.7.10... [pkg.DaveG.ca] | `-- Extracting javavmwrapper-2.7.10: .......... done [pkg.DaveG.ca] | `-- Installing xorg-fonts-truetype-7.7_1... [pkg.DaveG.ca] | | `-- Installing dejavu-2.37_4... [pkg.DaveG.ca] | | `-- Installing mkfontscale-1.2.3... [pkg.DaveG.ca] | | | `-- Installing libfontenc-1.1.8... [pkg.DaveG.ca] | | | `-- Extracting libfontenc-1.1.8: ...... done [pkg.DaveG.ca] | | `-- Extracting mkfontscale-1.2.3: .... done [pkg.DaveG.ca] | | `-- Extracting dejavu-2.37_4: .......... done [pkg.DaveG.ca] | | `-- Installing encodings-1.1.0,1... [pkg.DaveG.ca] | | `-- Extracting encodings-1.1.0,1: .......... done [pkg.DaveG.ca] | | `-- Installing font-bh-ttf-1.0.3_5... [pkg.DaveG.ca] | | `-- Extracting font-bh-ttf-1.0.3_5: .......... done [pkg.DaveG.ca] | | `-- Installing font-misc-ethiopic-1.0.4... [pkg.DaveG.ca] | | `-- Extracting font-misc-ethiopic-1.0.4: ... done [pkg.DaveG.ca] | | `-- Installing font-misc-meltho-1.0.3_5... [pkg.DaveG.ca] | | `-- Extracting font-misc-meltho-1.0.3_5: .......... done [pkg.DaveG.ca] `-- Extracting openjdk11-11.0.29+7.1_1: .......... done [pkg.DaveG.ca] `-- Installing sndio-1.10.0_1... ===> Creating groups Creating group '_sndio' with gid '702' ===> Creating users Creating user '_sndio' with uid '702' [pkg.DaveG.ca] `-- Extracting sndio-1.10.0_1: .......... done [pkg.DaveG.ca] Extracting openjfx14-14.0.2.1+1_18: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gdk-pixbuf-query-loaders.ucl Generating gdk-pixbuf modules cache ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: gtk-update-icon-cache.ucl Generating GTK icon cache for /usr/local/share/icons/hicolor Generating GTK icon cache for /usr/local/share/icons/Adwaita Generating GTK icon cache for /usr/local/share/icons/AdwaitaLegacy ==> Running trigger: glib-schemas.ucl Compiling glib schemas Warning: Schema ?org.gnome.system.locale? has path ?/system/locale/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy? has path ?/system/proxy/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy.http? has path ?/system/proxy/http/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy.https? has path ?/system/proxy/https/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy.ftp? has path ?/system/proxy/ftp/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. Warning: Schema ?org.gnome.system.proxy.socks? has path ?/system/proxy/socks/?. Paths starting with ?/apps/?, ?/desktop/? or ?/system/? are deprecated. ==> Running trigger: shared-mime-info.ucl Building the Shared MIME-Info database cache ===== Message from libinotify-20240724_3: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from python311-3.11.14: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===== Message from freetype2-2.14.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from wayland-1.24.0_2: -- Wayland requires XDG_RUNTIME_DIR to be defined to a path that will contain "wayland-%d" unix(4) sockets. This is usually handled by consolekit2 (via ck-launch-session) or pam_xdg (via login). ===== Message from libxkbcommon-1.13.1: -- If arrow keys don't work under X11 switch to legacy rules e.g., For sh/bash/ksh/zsh run and (optionally) add into ~/.profile: export XKB_DEFAULT_RULES=xorg For csh/tcsh run and (optionally) add into ~/.login: setenv XKB_DEFAULT_RULES xorg ===== Message from openjdk11-11.0.29+7.1_1: -- This OpenJDK implementation may require procfs(5) mounted on /proc for some applications. If you have not done it yet, please do the following: mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: proc /proc procfs rw 0 0 ===== Message from openjfx14-14.0.2.1+1_18: -- ===> NOTICE: The openjfx14 port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> igv-2.16.0_1 depends on package: openjfx14>0 - found ===> Returning to build of igv-2.16.0_1 ===> igv-2.16.0_1 depends on executable: gradle - not found ===> Installing existing package /packages/All/gradle6-6.9.4.pkg [pkg.DaveG.ca] Installing gradle6-6.9.4... [pkg.DaveG.ca] `-- Installing openjdk8-8.472.08.1_1... [pkg.DaveG.ca] | `-- Installing java-zoneinfo-2021.e... [pkg.DaveG.ca] | `-- Extracting java-zoneinfo-2021.e: .......... done [pkg.DaveG.ca] `-- Extracting openjdk8-8.472.08.1_1: .......... done [pkg.DaveG.ca] Extracting gradle6-6.9.4: .......... done ===== Message from openjdk8-8.472.08.1_1: -- This OpenJDK implementation may require procfs(5) mounted on /proc for some applications. If you have not done it yet, please do the following: mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: proc /proc procfs rw 0 0 ===== Message from gradle6-6.9.4: -- ===> NOTICE: The gradle6 port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> igv-2.16.0_1 depends on executable: gradle - found ===> Returning to build of igv-2.16.0_1 ===> igv-2.16.0_1 depends on package: gettext-runtime>=0.26 - found ===> igv-2.16.0_1 depends on file: /usr/local/openjdk11/bin/java - found ===> igv-2.16.0_1 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> igv-2.16.0_1 depends on file: /usr/local/bin/ccache - found ===> Returning to build of igv-2.16.0_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> igv-2.16.0_1 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for igv-2.16.0_1 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for igv-2.16.0_1 cd /wrkdirs/usr/ports/biology/igv/work/igv-2.16.0 && /usr/bin/env GRADLE_USER_HOME=/wrkdirs/usr/ports/biology/igv/work JAVA_HOME=/usr/local/openjdk11 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/igv/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/igv/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/igv/work/.cache HOME=/wrkdirs/usr/ports/biology/igv/work TMPDIR="/tmp" PATH=/usr/local/libexec/ccache:/wrkdirs/usr/ports/biology/igv/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/igv/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CCACHE_DIR="/root/.ccache" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" gradle --gradle-user-home /wrkdirs/usr/ports/biology/igv/work/gradle-igv --project-cache-dir /wrkdirs/usr/ports/biology/igv/work/gradle-igv --offline --build-cache --stacktrace createDist Welcome to Gradle 6.9.4! Here are the highlights of this release: - This is a small backport release. - Java 16 can be used to compile when used with Java toolchains - Dynamic versions can be used within plugin declarations - Native support for Apple Silicon processors For more details see https://docs.gradle.org/6.9.4/release-notes.html Starting a Gradle Daemon (subsequent builds will be faster) > Task :compileJava Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. > Task :processResources > Task :classes > Task :jar > Task :createDist Deprecated Gradle features were used in this build, making it incompatible with Gradle 7.0. Use '--warning-mode all' to show the individual deprecation warnings. See https://docs.gradle.org/6.9.4/userguide/command_line_interface.html#sec:command_line_warnings BUILD SUCCESSFUL in 20s 4 actionable tasks: 4 executed =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> igv-2.16.0_1 depends on package: openjfx14>0 - found ===> igv-2.16.0_1 depends on file: /usr/local/openjdk11/bin/java - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for igv-2.16.0_1 ===> Generating temporary packing list install -m 555 /wrkdirs/usr/ports/biology/igv/work/igv.sh /wrkdirs/usr/ports/biology/igv/work/stage/usr/local/bin/igv cd /wrkdirs/usr/ports/biology/igv/work/igv-2.16.0/build/IGV-dist/lib && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE ./ /wrkdirs/usr/ports/biology/igv/work/stage/usr/local/share/java/classes/igv install -m 0644 /portdistfiles/igv-2.16.0/tools.png /wrkdirs/usr/ports/biology/igv/work/stage/usr/local/share/pixmaps/igv.png ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-01-20T13:03:27+0000' 'PKG_NOTE_ports_top_git_hash=076a295eb33c' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=0835676e361b' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for igv-2.16.0_1 ===> Building igv-2.16.0_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for igv-2.16.0_1 build of biology/igv | igv-2.16.0_1 ended at Tue Jan 20 08:04:52 EST 2026 build time: 00:01:26