=>> Building science/gromacs build started at Fri Jan 23 20:43:25 EST 2026 port directory: /usr/ports/science/gromacs package name: gromacs-2025.4_1 building for: FreeBSD pkg.DaveG.ca 13.5-RELEASE-p7 FreeBSD 13.5-RELEASE-p7 1305000 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 4587 Nov 30 22:45 /usr/ports/science/gromacs/Makefile Ports top last git commit: 076a295eb33c Ports top unclean checkout: no Port dir last git commit: ad27224ba5c5 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1305000 Job Id: 05 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1305000 UNAME_v=FreeBSD 13.5-RELEASE-p7 1305000 UNAME_r=13.5-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/05/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_13_5_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for gromacs-2025.4_1: ATLAS=off: Use ATLAS for BLAS and LAPACK FLOAT=off: Use single instead of double precision HWLOC=on: Build with HWLOC2, portable hardware locality package LEGACY=on: Install legacy API OPENMP=on: Parallel processing support via OpenMP SIMD=off: Use CPU-specific optimizations ====> Multiprocessing: you have to select exactly one of them NOMP=off: No multiprocessing support MPICH=off: Parallel processing support via MPICH OPENMPI=off: Parallel processing support via Open MPI THREAD_MPI=on: Build a thread-MPI-based multithreaded version of GROMACS ====> Heterogeneous computing via OpenCL: you have to select exactly one of them OPENCL_NONE=on: No OpenCL OPENCL_ICD=off: OpenCL via Installable Client Driver OPENCL_SYCL=off: OpenCL via the OpenSYCL implementation of SYCL ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.11" BLA_VENDOR="Generic" XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/gromacs/work/.cache HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/gromacs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/gromacs/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/gromacs/work/.cache HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/gromacs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/gromacs/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/gromacs/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- ATLAS="@comment " NO_ATLAS="" FLOAT="@comment " NO_FLOAT="" SUFFIX_D="_d" HWLOC="" NO_HWLOC="@comment " LEGACY="" NO_LEGACY="@comment " MPICH="@comment " NO_MPICH="" NOMP="@comment " NO_NOMP="" OPENCL_ICD="@comment " NO_OPENCL_ICD="" OPENCL_NONE="" NO_OPENCL_NONE="@comment " OPENCL_SYCL="@comment " NO_OPENCL_SYCL="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" SIMD="@comment " NO_SIMD="" THREAD_MPI="" NO_THREAD_MPI="@comment " SUFFIX_MPI="" CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=13.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.42.0 PERL_VER=5.42 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.42 DOCSDIR="share/doc/gromacs" EXAMPLESDIR="share/examples/gromacs" DATADIR="share/gromacs" WWWDIR="www/gromacs" ETCDIR="etc/gromacs" --End PLIST_SUB-- --SUB_LIST-- ATLAS="@comment " NO_ATLAS="" FLOAT="@comment " NO_FLOAT="" HWLOC="" NO_HWLOC="@comment " LEGACY="" NO_LEGACY="@comment " MPICH="@comment " NO_MPICH="" NOMP="@comment " NO_NOMP="" OPENCL_ICD="@comment " NO_OPENCL_ICD="" OPENCL_NONE="" NO_OPENCL_NONE="@comment " OPENCL_SYCL="@comment " NO_OPENCL_SYCL="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" SIMD="@comment " NO_SIMD="" THREAD_MPI="" NO_THREAD_MPI="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gromacs DOCSDIR=/usr/local/share/doc/gromacs EXAMPLESDIR=/usr/local/share/examples/gromacs WWWDIR=/usr/local/www/gromacs ETCDIR=/usr/local/etc/gromacs --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> gromacs-2025.4_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.5.1.pkg [pkg.DaveG.ca] Installing pkg-2.5.1... [pkg.DaveG.ca] Extracting pkg-2.5.1: .......... done ===> gromacs-2025.4_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of gromacs-2025.4_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by gromacs-2025.4_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by gromacs-2025.4_1 for building => SHA256 Checksum OK for gromacs-2025.4.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by gromacs-2025.4_1 for building ===> Extracting for gromacs-2025.4_1 => SHA256 Checksum OK for gromacs-2025.4.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for gromacs-2025.4_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> gromacs-2025.4_1 depends on package: boost-libs>=1.44 - not found ===> Installing existing package /packages/All/boost-libs-1.89.0_2.pkg [pkg.DaveG.ca] Installing boost-libs-1.89.0_2... [pkg.DaveG.ca] `-- Installing icu-76.1,1... [pkg.DaveG.ca] `-- Extracting icu-76.1,1: .......... done [pkg.DaveG.ca] `-- Installing zstd-1.5.7_1... [pkg.DaveG.ca] `-- Extracting zstd-1.5.7_1: .......... done [pkg.DaveG.ca] Extracting boost-libs-1.89.0_2: .......... done ===== Message from boost-libs-1.89.0_2: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> gromacs-2025.4_1 depends on package: boost-libs>=1.44 - found ===> Returning to build of gromacs-2025.4_1 ===> gromacs-2025.4_1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.10.pkg [pkg.DaveG.ca] Installing cmake-core-3.31.10... [pkg.DaveG.ca] `-- Installing expat-2.7.3... [pkg.DaveG.ca] `-- Extracting expat-2.7.3: .......... done [pkg.DaveG.ca] `-- Installing jsoncpp-1.9.6_1... [pkg.DaveG.ca] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg.DaveG.ca] `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | `-- Installing libunistring-1.4.1... [pkg.DaveG.ca] | `-- Extracting libunistring-1.4.1: .......... done [pkg.DaveG.ca] `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] `-- Installing libuv-1.51.0... [pkg.DaveG.ca] `-- Extracting libuv-1.51.0: .......... done [pkg.DaveG.ca] `-- Installing rhash-1.4.6... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] `-- Extracting rhash-1.4.6: .......... done [pkg.DaveG.ca] Extracting cmake-core-3.31.10: .......... done ===> gromacs-2025.4_1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of gromacs-2025.4_1 ===> gromacs-2025.4_1 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.13.2,4.pkg [pkg.DaveG.ca] Installing ninja-1.13.2,4... [pkg.DaveG.ca] `-- Installing python311-3.11.14... [pkg.DaveG.ca] | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | `-- Installing readline-8.3.3... [pkg.DaveG.ca] | `-- Extracting readline-8.3.3: .......... done [pkg.DaveG.ca] `-- Extracting python311-3.11.14: .......... done [pkg.DaveG.ca] Extracting ninja-1.13.2,4: ..... done ===== Message from python311-3.11.14: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> gromacs-2025.4_1 depends on executable: ninja - found ===> Returning to build of gromacs-2025.4_1 ===> gromacs-2025.4_1 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-2.4.3,1.pkg [pkg.DaveG.ca] Installing pkgconf-2.4.3,1... [pkg.DaveG.ca] Extracting pkgconf-2.4.3,1: .......... done ===> gromacs-2025.4_1 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of gromacs-2025.4_1 ===> gromacs-2025.4_1 depends on file: /usr/local/bin/python3.11 - found ===> gromacs-2025.4_1 depends on package: perl5>=5.42.r<5.43 - not found ===> Installing existing package /packages/All/perl5-5.42.0_1.pkg [pkg.DaveG.ca] Installing perl5-5.42.0_1... [pkg.DaveG.ca] Extracting perl5-5.42.0_1: .......... done ===> gromacs-2025.4_1 depends on package: perl5>=5.42.r<5.43 - found ===> Returning to build of gromacs-2025.4_1 ===> gromacs-2025.4_1 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> gromacs-2025.4_1 depends on file: /usr/local/bin/ccache - found ===> Returning to build of gromacs-2025.4_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> gromacs-2025.4_1 depends on shared library: liblmfit.so - not found ===> Installing existing package /packages/All/lmfit-10.0.pkg [pkg.DaveG.ca] Installing lmfit-10.0... [pkg.DaveG.ca] Extracting lmfit-10.0: .......... done ===> gromacs-2025.4_1 depends on shared library: liblmfit.so - found (/usr/local/lib/liblmfit.so) ===> Returning to build of gromacs-2025.4_1 ===> gromacs-2025.4_1 depends on shared library: libmuparser.so - not found ===> Installing existing package /packages/All/muparser-2.3.5.pkg [pkg.DaveG.ca] Installing muparser-2.3.5... [pkg.DaveG.ca] Extracting muparser-2.3.5: .......... done ===> gromacs-2025.4_1 depends on shared library: libmuparser.so - found (/usr/local/lib/libmuparser.so) ===> Returning to build of gromacs-2025.4_1 ===> gromacs-2025.4_1 depends on shared library: libfftw3.so - not found ===> Installing existing package /packages/All/fftw3-3.3.10_5.pkg [pkg.DaveG.ca] Installing fftw3-3.3.10_5... [pkg.DaveG.ca] Extracting fftw3-3.3.10_5: .......... done ===> gromacs-2025.4_1 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> Returning to build of gromacs-2025.4_1 ===> gromacs-2025.4_1 depends on shared library: libhwloc.so - not found ===> Installing existing package /packages/All/hwloc2-2.12.1_1.pkg [pkg.DaveG.ca] Installing hwloc2-2.12.1_1... [pkg.DaveG.ca] `-- Installing level-zero-1.26.3... [pkg.DaveG.ca] | `-- Installing libfmt-12.1.0... [pkg.DaveG.ca] | `-- Extracting libfmt-12.1.0: .......... done [pkg.DaveG.ca] | `-- Installing spdlog-1.16.0_1... [pkg.DaveG.ca] | `-- Extracting spdlog-1.16.0_1: .......... done [pkg.DaveG.ca] `-- Extracting level-zero-1.26.3: .......... done [pkg.DaveG.ca] `-- Installing libpciaccess-0.18.1_1... [pkg.DaveG.ca] | `-- Installing hwdata-0.403,1... [pkg.DaveG.ca] | `-- Extracting hwdata-0.403,1: ...... done [pkg.DaveG.ca] `-- Extracting libpciaccess-0.18.1_1: ..... done [pkg.DaveG.ca] `-- Installing libxml2-2.14.6... [pkg.DaveG.ca] `-- Extracting libxml2-2.14.6: .......... done [pkg.DaveG.ca] Extracting hwloc2-2.12.1_1: .......... done ===> gromacs-2025.4_1 depends on shared library: libhwloc.so - found (/usr/local/lib/libhwloc.so) ===> Returning to build of gromacs-2025.4_1 ===> gromacs-2025.4_1 depends on shared library: libblas.so - not found ===> Installing existing package /packages/All/blas-3.12.1.pkg [pkg.DaveG.ca] Installing blas-3.12.1... [pkg.DaveG.ca] `-- Installing gcc14-14.2.0_4... [pkg.DaveG.ca] | `-- Installing binutils-2.44,1... [pkg.DaveG.ca] | `-- Extracting binutils-2.44,1: .......... done [pkg.DaveG.ca] | `-- Installing gmp-6.3.0... [pkg.DaveG.ca] | `-- Extracting gmp-6.3.0: .......... done [pkg.DaveG.ca] | `-- Installing mpc-1.3.1_1... [pkg.DaveG.ca] | | `-- Installing mpfr-4.2.2,1... [pkg.DaveG.ca] | | `-- Extracting mpfr-4.2.2,1: .......... done [pkg.DaveG.ca] | `-- Extracting mpc-1.3.1_1: ...... done [pkg.DaveG.ca] `-- Extracting gcc14-14.2.0_4: .......... done create symlink for gcc14 create symlink for gcc14 (world) create symlink for g++14 create symlink for g++14 (world) create symlink for cpp14 create symlink for cpp14 (world) [pkg.DaveG.ca] Extracting blas-3.12.1: ..... done ===== Message from gcc14-14.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> gromacs-2025.4_1 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> Returning to build of gromacs-2025.4_1 ===> gromacs-2025.4_1 depends on shared library: liblapack.so - not found ===> Installing existing package /packages/All/lapack-3.12.1.pkg [pkg.DaveG.ca] Installing lapack-3.12.1... [pkg.DaveG.ca] Extracting lapack-3.12.1: .......... done ===> gromacs-2025.4_1 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> Returning to build of gromacs-2025.4_1 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for gromacs-2025.4_1 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/gromacs/work/.build -- The C compiler identification is Clang 19.1.7 -- The CXX compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_CRAY_MACRO -- Performing Test HAVE_CRAY_MACRO - Failed -- Performing Test CXX17_COMPILES_SIMPLY -- Performing Test CXX17_COMPILES_SIMPLY - Success -- Found Python3: /usr/local/bin/python3.11 (found suitable version "3.11.14", minimum required is "3.9") found components: Interpreter Development Development.Module Development.Embed -- Found OpenMP_C: -fopenmp=libomp (found version "5.1") -- Found OpenMP_CXX: -fopenmp=libomp (found version "5.1") -- Found OpenMP: TRUE (found version "5.1") -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Performing Test CXXFLAGS_WARN_NO_RESERVED_IDENTIFIER -- Performing Test CXXFLAGS_WARN_NO_RESERVED_IDENTIFIER - Success -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS -- Performing Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Torch not found. Neural network potential support will be disabled. -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Looking for HWLOC -- Looking for hwloc_topology_init -- Looking for hwloc_topology_init - found -- hwloc version: -- Found HWLOC: /usr/local/lib/libhwloc.so (found suitable version "2.12.1", minimum required is "1.5") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Performing Test TEST_ATOMICS -- Performing Test TEST_ATOMICS - Success -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Failed -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detected build CPU vendor - AMD -- Detected build CPU brand - AMD Ryzen Threadripper 2990WX 32-Core Processor -- Detected build CPU family - 23 -- Detected build CPU model - 8 -- Detected build CPU stepping - 2 -- Detected build CPU features - aes amd apic avx avx2 clfsh cmov cx8 cx16 f16c fma htt lahf misalignsse mmx msr nonstop_tsc pclmuldq pdpe1gb popcnt pse rdrnd rdtscp sha sse2 sse3 sse4a sse4.1 sse4.2 ssse3 -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for system XDR support -- Checking for system XDR support - present -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Looking for fftw_plan_many_dft in /usr/local/lib/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/local/lib/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/local/lib/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/local/lib/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/local/lib/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/local/lib/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/local/lib/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/local/lib/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/local/lib/libfftw3.so -- Looking for fftw_have_sse in /usr/local/lib/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/local/lib/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/local/lib/libfftw3.so - found -- Using external FFT library - FFTW3 -- Found BLAS: /usr/local/lib/libblas.so -- Found LAPACK: /usr/local/lib/liblapack.so -- No image conversion possible without ImageMagick -- Performing Test HAS_WARNING_EVERYTHING -- Performing Test HAS_WARNING_EVERYTHING - Success -- Performing Test HAS_WARNING_NO_CPLUSPLUS98_COMPAT -- Performing Test HAS_WARNING_NO_CPLUSPLUS98_COMPAT - Success -- Performing Test HAS_WARNING_NO_CPLUSPLUS98_COMPAT_PEDANTIC -- Performing Test HAS_WARNING_NO_CPLUSPLUS98_COMPAT_PEDANTIC - Success -- Performing Test HAS_WARNING_NO_RETURN_STD_MOVE_IN_CPLUSPLUS11 -- Performing Test HAS_WARNING_NO_RETURN_STD_MOVE_IN_CPLUSPLUS11 - Failed -- Performing Test HAS_WARNING_NO_SOURCE_USED_OPENMP -- Performing Test HAS_WARNING_NO_SOURCE_USED_OPENMP - Success -- Performing Test HAS_WARNING_NO_CPLUSPLUS17_EXTENSIONS -- Performing Test HAS_WARNING_NO_CPLUSPLUS17_EXTENSIONS - Success -- Performing Test HAS_WARNING_NO_DOCUMENTATION_UNKNOWN_COMMAND -- Performing Test HAS_WARNING_NO_DOCUMENTATION_UNKNOWN_COMMAND - Success -- Performing Test HAS_WARNING_NO_COVERED_SWITCH_DEFAULT -- Performing Test HAS_WARNING_NO_COVERED_SWITCH_DEFAULT - Success -- Performing Test HAS_WARNING_NO_SWITCH_ENUM -- Performing Test HAS_WARNING_NO_SWITCH_ENUM - Success -- Performing Test HAS_WARNING_NO_SWITCH_DEFAULT -- Performing Test HAS_WARNING_NO_SWITCH_DEFAULT - Success -- Performing Test HAS_WARNING_NO_EXTRA_SEMI_STMT -- Performing Test HAS_WARNING_NO_EXTRA_SEMI_STMT - Success -- Performing Test HAS_WARNING_NO_WEAK_VTABLES -- Performing Test HAS_WARNING_NO_WEAK_VTABLES - Success -- Performing Test HAS_WARNING_NO_SHADOW -- Performing Test HAS_WARNING_NO_SHADOW - Success -- Performing Test HAS_WARNING_NO_PADDED -- Performing Test HAS_WARNING_NO_PADDED - Success -- Performing Test HAS_WARNING_NO_RESERVED_ID_MACRO -- Performing Test HAS_WARNING_NO_RESERVED_ID_MACRO - Success -- Performing Test HAS_WARNING_NO_DOUBLE_PROMOTION -- Performing Test HAS_WARNING_NO_DOUBLE_PROMOTION - Success -- Performing Test HAS_WARNING_NO_EXIT_TIME_DESTRUCTORS -- Performing Test HAS_WARNING_NO_EXIT_TIME_DESTRUCTORS - Success -- Performing Test HAS_WARNING_NO_GLOBAL_CONSTRUCTORS -- Performing Test HAS_WARNING_NO_GLOBAL_CONSTRUCTORS - Success -- Performing Test HAS_WARNING_NO_DOCUMENTATION -- Performing Test HAS_WARNING_NO_DOCUMENTATION - Success -- Performing Test HAS_WARNING_NO_FORMAT_NONLITERAL -- Performing Test HAS_WARNING_NO_FORMAT_NONLITERAL - Success -- Performing Test HAS_WARNING_NO_USED_BUT_MARKED_UNUSED -- Performing Test HAS_WARNING_NO_USED_BUT_MARKED_UNUSED - Success -- Performing Test HAS_WARNING_NO_FLOAT_EQUAL -- Performing Test HAS_WARNING_NO_FLOAT_EQUAL - Success -- Performing Test HAS_WARNING_CONDITIONAL_UNINITIALIZED -- Performing Test HAS_WARNING_CONDITIONAL_UNINITIALIZED - Success -- Performing Test HAS_WARNING_NO_CONVERSION -- Performing Test HAS_WARNING_NO_CONVERSION - Success -- Performing Test HAS_WARNING_NO_DISABLED_MACRO_EXPANSION -- Performing Test HAS_WARNING_NO_DISABLED_MACRO_EXPANSION - Success -- Performing Test HAS_WARNING_NO_UNUSED_MACROS -- Performing Test HAS_WARNING_NO_UNUSED_MACROS - Success -- Performing Test HAS_WARNING_NO_UNSAFE_BUFFER_USAGE -- Performing Test HAS_WARNING_NO_UNSAFE_BUFFER_USAGE - Success -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAS_WARNING_NO_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Performing Test HAS_WARNING_NO_GNU_ZERO_VARIADIC_MACRO_ARGUMENTS -- Performing Test HAS_WARNING_NO_GNU_ZERO_VARIADIC_MACRO_ARGUMENTS - Success -- Performing Test HAS_WARNING_NO_UNUSED_MEMBER_FUNCTION -- Performing Test HAS_WARNING_NO_UNUSED_MEMBER_FUNCTION - Success -- Found Python: /usr/local/bin/python3.11 (found version "3.11.14") found components: Interpreter -- Performing Test HAVE_NO_DEPRECATED_COPY -- Performing Test HAVE_NO_DEPRECATED_COPY - Success -- Performing Test HAVE_NO_IMPLICIT_INT_FLOAT_CONVERSION -- Performing Test HAVE_NO_IMPLICIT_INT_FLOAT_CONVERSION - Success -- Looking for dlopen -- Looking for dlopen - found -- Performing Test HAS_NO_STRINGOP_TRUNCATION -- Performing Test HAS_NO_STRINGOP_TRUNCATION - Failed -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT -- Performing Test HAS_WARNING_NO_CAST_FUNCTION_TYPE_STRICT - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_MISSING_DECLARATIONS -- Performing Test HAS_NO_MISSING_DECLARATIONS - Success -- Performing Test HAS_NO_NULL_CONVERSIONS -- Performing Test HAS_NO_NULL_CONVERSIONS - Success -- Looking for inttypes.h -- Looking for inttypes.h - found -- Performing Test HAS_WARNING_NO_DEPRECATED_NON_PROTOTYPE -- Performing Test HAS_WARNING_NO_DEPRECATED_NON_PROTOTYPE - Success -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success -- Found Lmfit: /usr/local/include (found suitable version "10.0.0", minimum required is "7.0") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE pygments) (Required is at least version "4.0.0") -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Configuring done (117.2s) -- Generating done (1.8s) CMake Warning: Manually-specified variables were not used by the project: BOOST_PYTHON_SUFFIX CMAKE_COLOR_MAKEFILE CMAKE_MODULE_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE FETCHCONTENT_FULLY_DISCONNECTED Python_ADDITIONAL_VERSIONS -- Build files have been written to: /wrkdirs/usr/ports/science/gromacs/work/.build =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for gromacs-2025.4_1 [ 0% 64/1017] cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-2025.4 && /usr/local/bin/cmake -D PYTHON_EXECUTABLE=/usr/local/bin/python3.11 -D PROJECT_VERSION=2025.4 -D PROJECT_SOURCE_DIR=/wrkdirs/usr/ports/science/gromacs/work/gromacs-2025.4 -D VERSION_CMAKEIN=/wrkdirs/usr/ports/science/gromacs/work/.build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/wrkdirs/usr/ports/science/gromacs/work/.build/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /wrkdirs/usr/ports/science/gromacs/work/gromacs-2025.4/cmake/gmxGenerateVersionInfoWithoutGit.cmake [ 0% 65/1017] /usr/local/libexec/ccache/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2025.4/src/include -I/wrkdirs/usr/ports/science/gromacs/work/.build/src/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2025.4/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -Wno-reserved-identifier 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src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -MF src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o.d -o src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/atomic.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2025.4/src/external/thread_mpi/src/atomic.cpp [ 0% 68/1017] /usr/local/libexec/ccache/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2025.4/src/include -I/wrkdirs/usr/ports/science/gromacs/work/.build/src/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2025.4/src/external/thread_mpi/include -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=c++17 -fPIC -Wno-reserved-identifier -Wno-missing-field-initializers -MD -MT src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/lock.cpp.o -MF 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perl5>=5.42.r<5.43 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for gromacs-2025.4_1 ===> Generating temporary packing list [ 7% 1/14] cd /wrkdirs/usr/ports/science/gromacs/work/gromacs-2025.4 && /usr/local/bin/cmake -D PYTHON_EXECUTABLE=/usr/local/bin/python3.11 -D PROJECT_VERSION=2025.4 -D PROJECT_SOURCE_DIR=/wrkdirs/usr/ports/science/gromacs/work/gromacs-2025.4 -D VERSION_CMAKEIN=/wrkdirs/usr/ports/science/gromacs/work/.build/VersionInfo-partial.cmake.cmakein -D VERSION_OUT=/wrkdirs/usr/ports/science/gromacs/work/.build/VersionInfo.cmake -D VERSION_STRING_OF_FORK= -P /wrkdirs/usr/ports/science/gromacs/work/gromacs-2025.4/cmake/gmxGenerateVersionInfoWithoutGit.cmake [ 50% 2/2] cd /wrkdirs/usr/ports/science/gromacs/work/.build && /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" 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/wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/gromos43a1.ff/ions.itp -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/gromos43a1.ff/ffbonded.itp -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/gromos43a1.ff/spc.itp -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/gromos43a1.ff/methanol216.gro -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/gromos43a1.ff/spce.itp -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/gromos43a1.ff/forcefield.doc -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/ffG53a6.itp -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/oplsaa.ff -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/oplsaa.ff/tip3p.itp -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/oplsaa.ff/tip5pe.itp -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/oplsaa.ff/aminoacids.n.tdb -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/oplsaa.ff/aminoacids.c.tdb -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/oplsaa.ff/aminoacids.vsd -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/oplsaa.ff/tip5p.itp -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/oplsaa.ff/1propanol.itp -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/oplsaa.ff/tip4pew.itp -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/oplsaa.ff/aminoacids.r2b -- Installing: 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/wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/amber94.ff/ffbonded.itp -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/amber94.ff/spc.itp -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/amber94.ff/spce.itp -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/amber94.ff/forcefield.doc -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/amber99sb.ff -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/amber99sb.ff/rna.hdb -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/amber99sb.ff/dna.rtp -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/amber99sb.ff/dna.r2b -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/gromacs/top/amber99sb.ff/tip3p.itp -- Installing: 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/wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/man/man1/gmx-helixorient.1 -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/man/man1/gmx-disre.1 -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/man/man1/gmx-filter.1 -- Installing: /wrkdirs/usr/ports/science/gromacs/work/stage/usr/local/share/man/man1/gmx-velacc.1 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-01-24T01:43:25+0000' 'PKG_NOTE_ports_top_git_hash=076a295eb33c' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=ad27224ba5c5' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for gromacs-2025.4_1 ===> Building gromacs-2025.4_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for gromacs-2025.4_1 build of science/gromacs | gromacs-2025.4_1 ended at Fri Jan 23 20:49:20 EST 2026 build time: 00:05:57