=>> Building biology/figtree build started at Wed Jan 21 15:17:40 EST 2026 port directory: /usr/ports/biology/figtree package name: figtree-1.4.4.14 building for: FreeBSD pkg.DaveG.ca 14.3-RELEASE-p7 FreeBSD 14.3-RELEASE-p7 1403000 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1145 Jan 14 2025 /usr/ports/biology/figtree/Makefile Ports top last git commit: 076a295eb33c Ports top unclean checkout: no Port dir last git commit: 0835676e361b Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1403000 Job Id: 15 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1403000 UNAME_v=FreeBSD 14.3-RELEASE-p7 1403000 UNAME_r=14.3-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/15/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_14_3_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/figtree/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/figtree/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/figtree/work/.cache HOME=/wrkdirs/usr/ports/biology/figtree/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/figtree/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/figtree/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- JAVA_HOME=/usr/local/openjdk17 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/figtree/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/figtree/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/figtree/work/.cache HOME=/wrkdirs/usr/ports/biology/figtree/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/figtree/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/figtree/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=14.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/figtree" EXAMPLESDIR="share/examples/figtree" DATADIR="share/figtree" WWWDIR="www/figtree" ETCDIR="etc/figtree" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="17" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/figtree DOCSDIR=/usr/local/share/doc/figtree EXAMPLESDIR=/usr/local/share/examples/figtree WWWDIR=/usr/local/www/figtree ETCDIR=/usr/local/etc/figtree --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> figtree-1.4.4.14 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.5.1.pkg [pkg.DaveG.ca] Installing pkg-2.5.1... [pkg.DaveG.ca] Extracting pkg-2.5.1: .......... done ===> figtree-1.4.4.14 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of figtree-1.4.4.14 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by figtree-1.4.4.14 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by figtree-1.4.4.14 for building => SHA256 Checksum OK for rambaut-figtree-v1.4.4-14-gf9085b6_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by figtree-1.4.4.14 for building ===> Extracting for figtree-1.4.4.14 => SHA256 Checksum OK for rambaut-figtree-v1.4.4-14-gf9085b6_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for figtree-1.4.4.14 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> figtree-1.4.4.14 depends on file: /usr/local/openjdk17/bin/java - not found ===> Installing existing package /packages/All/openjdk17-17.0.17+10.1_1.pkg [pkg.DaveG.ca] Installing openjdk17-17.0.17+10.1_1... [pkg.DaveG.ca] `-- Installing alsa-lib-1.2.14... [pkg.DaveG.ca] `-- Extracting alsa-lib-1.2.14: .......... done [pkg.DaveG.ca] `-- Installing fontconfig-2.17.1,1... [pkg.DaveG.ca] | `-- Installing expat-2.7.3... [pkg.DaveG.ca] | `-- Extracting expat-2.7.3: .......... done [pkg.DaveG.ca] | `-- Installing freetype2-2.14.1... [pkg.DaveG.ca] | | `-- Installing brotli-1.2.0,1... [pkg.DaveG.ca] | | `-- Extracting brotli-1.2.0,1: .......... done [pkg.DaveG.ca] | | `-- Installing png-1.6.53... [pkg.DaveG.ca] | | `-- Extracting png-1.6.53: .......... done [pkg.DaveG.ca] | `-- Extracting freetype2-2.14.1: .......... done [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] `-- Extracting fontconfig-2.17.1,1: .......... done [pkg.DaveG.ca] `-- Installing giflib-5.2.2... [pkg.DaveG.ca] `-- Extracting giflib-5.2.2: .......... done [pkg.DaveG.ca] `-- Installing harfbuzz-12.3.0... [pkg.DaveG.ca] | `-- Installing glib-2.84.4,2... [pkg.DaveG.ca] | | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | | `-- Installing libiconv-1.18_1... [pkg.DaveG.ca] | | `-- Extracting libiconv-1.18_1: .......... done [pkg.DaveG.ca] | | `-- Installing libinotify-20240724_3... [pkg.DaveG.ca] | | `-- Extracting libinotify-20240724_3: .......... done [pkg.DaveG.ca] | | `-- Installing pcre2-10.47_1... [pkg.DaveG.ca] | | `-- Extracting pcre2-10.47_1: .......... done [pkg.DaveG.ca] | | `-- Installing py311-packaging-25.0... [pkg.DaveG.ca] | | `-- Installing python311-3.11.14... [pkg.DaveG.ca] | | | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | | | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | | | `-- Installing readline-8.3.3... [pkg.DaveG.ca] | | | `-- Extracting readline-8.3.3: .......... done [pkg.DaveG.ca] | | `-- Extracting python311-3.11.14: .......... done [pkg.DaveG.ca] | | `-- Extracting py311-packaging-25.0: .......... done [pkg.DaveG.ca] | `-- Extracting glib-2.84.4,2: .......... done [pkg.DaveG.ca] | `-- Installing graphite2-1.3.14... [pkg.DaveG.ca] | `-- Extracting graphite2-1.3.14: .......... done [pkg.DaveG.ca] `-- Extracting harfbuzz-12.3.0: .......... done [pkg.DaveG.ca] `-- Installing javavmwrapper-2.7.10... [pkg.DaveG.ca] `-- Extracting javavmwrapper-2.7.10: .......... done [pkg.DaveG.ca] `-- Installing jpeg-turbo-3.1.3... [pkg.DaveG.ca] `-- Extracting jpeg-turbo-3.1.3: .......... done [pkg.DaveG.ca] `-- Installing lcms2-2.17... [pkg.DaveG.ca] | `-- Installing tiff-4.7.1... [pkg.DaveG.ca] | | `-- Installing jbigkit-2.1_3... [pkg.DaveG.ca] | | `-- Extracting jbigkit-2.1_3: .......... done [pkg.DaveG.ca] | | `-- Installing lerc-4.0.0... [pkg.DaveG.ca] | | `-- Extracting lerc-4.0.0: ..... done [pkg.DaveG.ca] | | `-- Installing libdeflate-1.25... [pkg.DaveG.ca] | | `-- Extracting libdeflate-1.25: .......... done [pkg.DaveG.ca] | | `-- Installing zstd-1.5.7_1... [pkg.DaveG.ca] | | `-- Extracting zstd-1.5.7_1: .......... done [pkg.DaveG.ca] | `-- Extracting tiff-4.7.1: .......... done [pkg.DaveG.ca] `-- Extracting lcms2-2.17: .......... done [pkg.DaveG.ca] `-- Installing libX11-1.8.12,1... [pkg.DaveG.ca] | `-- Installing libxcb-1.17.0... [pkg.DaveG.ca] | | `-- Installing libXau-1.0.12... [pkg.DaveG.ca] | | `-- Extracting libXau-1.0.12: .......... done [pkg.DaveG.ca] | | `-- Installing libXdmcp-1.1.5... [pkg.DaveG.ca] | | `-- Installing xorgproto-2024.1... [pkg.DaveG.ca] | | `-- Extracting xorgproto-2024.1: .......... done [pkg.DaveG.ca] | | `-- Extracting libXdmcp-1.1.5: ...... done [pkg.DaveG.ca] | `-- Extracting libxcb-1.17.0: .......... done [pkg.DaveG.ca] `-- Extracting libX11-1.8.12,1: .......... done [pkg.DaveG.ca] `-- Installing libXext-1.3.6,1... [pkg.DaveG.ca] `-- Extracting libXext-1.3.6,1: .......... done [pkg.DaveG.ca] `-- Installing libXi-1.8.2,1... [pkg.DaveG.ca] | `-- Installing libXfixes-6.0.1... [pkg.DaveG.ca] | `-- Extracting libXfixes-6.0.1: ....... done [pkg.DaveG.ca] `-- Extracting libXi-1.8.2,1: .......... done [pkg.DaveG.ca] `-- Installing libXrandr-1.5.4... [pkg.DaveG.ca] | `-- Installing libXrender-0.9.12... [pkg.DaveG.ca] | `-- Extracting libXrender-0.9.12: ....... done [pkg.DaveG.ca] `-- Extracting libXrandr-1.5.4: .......... done [pkg.DaveG.ca] `-- Installing libXt-1.3.0,1... [pkg.DaveG.ca] | `-- Installing libICE-1.1.2,1... [pkg.DaveG.ca] | `-- Extracting libICE-1.1.2,1: .......... done [pkg.DaveG.ca] | `-- Installing libSM-1.2.6,1... [pkg.DaveG.ca] | `-- Extracting libSM-1.2.6,1: ........ done [pkg.DaveG.ca] `-- Extracting libXt-1.3.0,1: .......... done [pkg.DaveG.ca] `-- Installing libXtst-1.2.5... [pkg.DaveG.ca] `-- Extracting libXtst-1.2.5: .......... done [pkg.DaveG.ca] `-- Installing xorg-fonts-truetype-7.7_1... [pkg.DaveG.ca] | `-- Installing dejavu-2.37_4... [pkg.DaveG.ca] | | `-- Installing mkfontscale-1.2.3... [pkg.DaveG.ca] | | `-- Installing libfontenc-1.1.8... [pkg.DaveG.ca] | | `-- Extracting libfontenc-1.1.8: ...... done [pkg.DaveG.ca] | | `-- Extracting mkfontscale-1.2.3: .... done [pkg.DaveG.ca] | `-- Extracting dejavu-2.37_4: .......... done [pkg.DaveG.ca] | `-- Installing encodings-1.1.0,1... [pkg.DaveG.ca] | `-- Extracting encodings-1.1.0,1: .......... done [pkg.DaveG.ca] | `-- Installing font-bh-ttf-1.0.3_5... [pkg.DaveG.ca] | `-- Extracting font-bh-ttf-1.0.3_5: .......... done [pkg.DaveG.ca] | `-- Installing font-misc-ethiopic-1.0.4... [pkg.DaveG.ca] | `-- Extracting font-misc-ethiopic-1.0.4: ... done [pkg.DaveG.ca] | `-- Installing font-misc-meltho-1.0.3_5... [pkg.DaveG.ca] | `-- Extracting font-misc-meltho-1.0.3_5: .......... done [pkg.DaveG.ca] Extracting openjdk17-17.0.17+10.1_1: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ===== Message from freetype2-2.14.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from libinotify-20240724_3: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from python311-3.11.14: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===== Message from openjdk17-17.0.17+10.1_1: -- This OpenJDK implementation may require procfs(5) mounted on /proc for some applications. If you have not done it yet, please do the following: mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: proc /proc procfs rw 0 0 ===> figtree-1.4.4.14 depends on file: /usr/local/openjdk17/bin/java - found ===> Returning to build of figtree-1.4.4.14 ===> figtree-1.4.4.14 depends on file: /usr/local/bin/ant - not found ===> Installing existing package /packages/All/apache-ant-1.10.15.pkg [pkg.DaveG.ca] Installing apache-ant-1.10.15... [pkg.DaveG.ca] `-- Installing openjdk8-8.472.08.1_1... [pkg.DaveG.ca] | `-- Installing java-zoneinfo-2021.e... [pkg.DaveG.ca] | `-- Extracting java-zoneinfo-2021.e: .......... done [pkg.DaveG.ca] `-- Extracting openjdk8-8.472.08.1_1: .......... done [pkg.DaveG.ca] Extracting apache-ant-1.10.15: .......... done ===== Message from openjdk8-8.472.08.1_1: -- This OpenJDK implementation may require procfs(5) mounted on /proc for some applications. If you have not done it yet, please do the following: mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: proc /proc procfs rw 0 0 ===> figtree-1.4.4.14 depends on file: /usr/local/bin/ant - found ===> Returning to build of figtree-1.4.4.14 ===> figtree-1.4.4.14 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> figtree-1.4.4.14 depends on file: /usr/local/bin/ccache - found ===> Returning to build of figtree-1.4.4.14 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for figtree-1.4.4.14 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for figtree-1.4.4.14 Buildfile: /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build.xml init: [mkdir] Created dir: /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build [mkdir] Created dir: /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/dist compile: [javac] /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build.xml:39: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds [javac] Compiling 130 source files to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/applet/FigTreeApplet.java:54: warning: [removal] JApplet in javax.swing has been deprecated and marked for removal [javac] public class FigTreeApplet extends JApplet { [javac] ^ [javac] /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/ui/components/RealNumberField.java:122: warning: [removal] Double(String) in Double has been deprecated and marked for removal [javac] return new Double(getText()); [javac] ^ [javac] /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/ui/components/RealNumberField.java:130: warning: [removal] Double(String) in Double has been deprecated and marked for removal [javac] return new Double(getText()); [javac] ^ [javac] /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/ui/components/RealNumberField.java:132: warning: [removal] Double(double) in Double has been deprecated and marked for removal [javac] return new Double(def); [javac] ^ [javac] /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/FigTreeFrame.java:1055: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal [javac] values.put(taxon, new Boolean(valueString)); [javac] ^ [javac] /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/FigTreeFrame.java:1057: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal [javac] values.put(taxon, new Integer(valueString)); [javac] ^ [javac] /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/FigTreeFrame.java:1059: warning: [removal] Double(String) in Double has been deprecated and marked for removal [javac] values.put(taxon, new Double(valueString)); [javac] ^ [javac] /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/treeviewer/annotations/AnnotationDialog.java:212: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal [javac] return new Boolean(((JComboBox)component).getSelectedItem().toString()); [javac] ^ [javac] /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/ui/components/WholeNumberField.java:107: warning: [removal] Integer(String) in Integer has been deprecated and marked for removal [javac] return new Integer(getText()); [javac] ^ [javac] /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/ui/components/WholeNumberField.java:116: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal [javac] return new Integer(default_value); [javac] ^ [javac] /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/FigTreeNexusImporter.java:91: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal [javac] return new Boolean(value); [javac] ^ [javac] /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/treeviewer/TimeScaleController.java:175: warning: [removal] Boolean(boolean) in Boolean has been deprecated and marked for removal [javac] settings.put(CONTROLLER_KEY + "." + SCALE_ROOT_KEY, new Boolean(scaleRootRadio.isSelected())); [javac] ^ [javac] /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/ui/RomanFormat.java:122: warning: [removal] Long(long) in Long has been deprecated and marked for removal [javac] return new Long(tot); [javac] ^ [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 14 warnings [copy] Copying 54 files to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/actionButton.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/actionButton.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/actionButtonInactive.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/actionButtonInactive.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/actionButtonPressed.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/actionButtonPressed.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/add.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/add.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/addButton.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/addButton.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/addButtonInactive.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/addButtonInactive.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/addButtonPressed.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/addButtonPressed.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/annotation.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/annotation.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/annotationTool.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/annotationTool.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/cartoonNodeTool.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/cartoonNodeTool.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/chartTool.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/chartTool.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/collapseNodeTool.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/collapseNodeTool.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/coloursTool.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/coloursTool.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/crosshairCursor.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/crosshairCursor.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/dataEditorTool.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/dataEditorTool.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/document.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/document.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/exportTool.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/exportTool.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/figtree.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/figtree.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/figtreeLogo.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/figtreeLogo.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/filterBackground.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/filterBackground.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/find.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/find.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/findTool.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/findTool.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/fontBiggerTool.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/fontBiggerTool.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/fontSmallerTool.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/fontSmallerTool.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/hilightTool.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/hilightTool.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/import.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/import.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/infoTool.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/infoTool.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/minus.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/minus.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/next.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/next.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/nextButton.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/nextButton.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/nextButtonInactive.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/nextButtonInactive.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/nextButtonPressed.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/nextButtonPressed.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/prefsAdvanced.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/prefsAdvanced.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/prefsClipboard.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/prefsClipboard.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/prefsFonts.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/prefsFonts.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/prefsGeneral.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/prefsGeneral.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/prev.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/prev.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/previousButton.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/previousButton.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/previousButtonInactive.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/previousButtonInactive.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/previousButtonPressed.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/previousButtonPressed.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/project.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/project.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/projectTool.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/projectTool.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/publication.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/publication.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/removeButton.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/removeButton.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/removeButtonInactive.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/removeButtonInactive.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/removeButtonPressed.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/removeButtonPressed.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/rerootTool.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/rerootTool.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/rotateTool.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/rotateTool.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/statisticsTool.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/statisticsTool.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/tableSelection.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/tableSelection.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/application/images/tableSelectionGray.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/application/images/tableSelectionGray.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/treeviewer/images/polarTree.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/treeviewer/images/polarTree.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/treeviewer/images/radialTree.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/treeviewer/images/radialTree.png [copy] Copying /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/src/figtree/treeviewer/images/rectangularTree.png to /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/build/figtree/treeviewer/images/rectangularTree.png dist: [jar] Building jar: /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/dist/figtree.jar [jar] Building jar: /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/dist/figtreepanel.jar [jar] Building jar: /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/dist/figtree-pdf.jar [war] Building war: /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/dist/figtree.war BUILD SUCCESSFUL Total time: 8 seconds =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for figtree-1.4.4.14 ===> Generating temporary packing list install -m 0644 /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/dist/*.jar /wrkdirs/usr/ports/biology/figtree/work/stage/usr/local/share/java/classes install -m 0644 /wrkdirs/usr/ports/biology/figtree/work/figtree-1.4.4-14-gf9085b6/release/Linux/icons/figtree.png /wrkdirs/usr/ports/biology/figtree/work/stage/usr/local/share/pixmaps/figtree.png ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-01-21T20:17:40+0000' 'PKG_NOTE_ports_top_git_hash=076a295eb33c' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=0835676e361b' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for figtree-1.4.4.14 ===> Building figtree-1.4.4.14 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for figtree-1.4.4.14 build of biology/figtree | figtree-1.4.4.14 ended at Wed Jan 21 15:17:59 EST 2026 build time: 00:00:21