=>> Building biology/fermi-lite build started at Wed Feb 18 22:13:31 EST 2026 port directory: /usr/ports/biology/fermi-lite package name: fermi-lite-0.1.13_2 building for: FreeBSD pkg.DaveG.ca 15.0-RELEASE-p3 FreeBSD 15.0-RELEASE-p3 1500068 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1395 Jan 5 20:59 /usr/ports/biology/fermi-lite/Makefile Ports top last git commit: eac71dbf758c Ports top unclean checkout: no Port dir last git commit: 60c30947f1a2 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1500068 Job Id: 11 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500068 UNAME_v=FreeBSD 15.0-RELEASE-p3 1500068 UNAME_r=15.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/11/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_15_0_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=/usr/local/bin/gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/fermi-lite/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/fermi-lite/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/fermi-lite/work/.cache HOME=/wrkdirs/usr/ports/biology/fermi-lite/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/fermi-lite/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/fermi-lite/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/fermi-lite/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/fermi-lite/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/fermi-lite/work/.cache HOME=/wrkdirs/usr/ports/biology/fermi-lite/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/fermi-lite/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/fermi-lite/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/fermi-lite" EXAMPLESDIR="share/examples/fermi-lite" DATADIR="share/fermi-lite" WWWDIR="www/fermi-lite" ETCDIR="etc/fermi-lite" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/fermi-lite DOCSDIR=/usr/local/share/doc/fermi-lite EXAMPLESDIR=/usr/local/share/examples/fermi-lite WWWDIR=/usr/local/www/fermi-lite ETCDIR=/usr/local/etc/fermi-lite --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> fermi-lite-0.1.13_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.5.1.pkg [pkg.DaveG.ca] Installing pkg-2.5.1... [pkg.DaveG.ca] Extracting pkg-2.5.1: .......... done ===> fermi-lite-0.1.13_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of fermi-lite-0.1.13_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by fermi-lite-0.1.13_2 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by fermi-lite-0.1.13_2 for building => SHA256 Checksum OK for lh3-fermi-lite-v0.1-13-g85f159e_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by fermi-lite-0.1.13_2 for building ===> Extracting for fermi-lite-0.1.13_2 => SHA256 Checksum OK for lh3-fermi-lite-v0.1-13-g85f159e_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for fermi-lite-0.1.13_2 ===> Applying FreeBSD patches for fermi-lite-0.1.13_2 from /usr/ports/biology/fermi-lite/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> fermi-lite-0.1.13_2 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [pkg.DaveG.ca] Installing gmake-4.4.1... [pkg.DaveG.ca] `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] Extracting gmake-4.4.1: .......... done ===> fermi-lite-0.1.13_2 depends on package: gmake>=4.4.1 - found ===> Returning to build of fermi-lite-0.1.13_2 ===> fermi-lite-0.1.13_2 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> fermi-lite-0.1.13_2 depends on file: /usr/local/bin/ccache - found ===> Returning to build of fermi-lite-0.1.13_2 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for fermi-lite-0.1.13_2 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for fermi-lite-0.1.13_2 gcc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing kthread.c -o kthread.o gcc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing misc.c -o misc.o gcc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing bseq.c -o bseq.o gcc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing htab.c -o htab.o gcc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing bfc.c -o bfc.o gcc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing rle.c -o rle.o gcc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing rope.c -o rope.o gcc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing mrope.c -o mrope.o gcc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing rld0.c -o rld0.o gcc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing unitig.c -o unitig.o gcc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing mag.c -o mag.o gcc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing bubble.c -o bubble.o gcc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing ksw.c -o ksw.o gcc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing example.c -o example.o ar -csru libfml.a kthread.o misc.o bseq.o htab.o bfc.o rle.o rope.o mrope.o rld0.o unitig.o mag.o bubble.o ksw.o gcc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing libfml.a example.o -o fml-asm -L. -lfml -lm -lz -lpthread =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for fermi-lite-0.1.13_2 ===> Generating temporary packing list install -s -m 555 /wrkdirs/usr/ports/biology/fermi-lite/work/fermi-lite-0.1-13-g85f159e/fml-asm /wrkdirs/usr/ports/biology/fermi-lite/work/stage/usr/local/bin install -m 0644 /wrkdirs/usr/ports/biology/fermi-lite/work/fermi-lite-0.1-13-g85f159e/fml.h /wrkdirs/usr/ports/biology/fermi-lite/work/stage/usr/local/include install -m 0644 /wrkdirs/usr/ports/biology/fermi-lite/work/fermi-lite-0.1-13-g85f159e/libfml.a /wrkdirs/usr/ports/biology/fermi-lite/work/stage/usr/local/lib install -s -m 0644 /wrkdirs/usr/ports/biology/fermi-lite/work/fermi-lite-0.1-13-g85f159e/libfml.so /wrkdirs/usr/ports/biology/fermi-lite/work/stage/usr/local/lib ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-02-19T03:13:31+0000' 'PKG_NOTE_ports_top_git_hash=eac71dbf758c' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=60c30947f1a2' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for fermi-lite-0.1.13_2 ===> Building fermi-lite-0.1.13_2 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for fermi-lite-0.1.13_2 build of biology/fermi-lite | fermi-lite-0.1.13_2 ended at Wed Feb 18 22:13:39 EST 2026 build time: 00:00:09