=>> Building biology/emboss build started at Wed Mar 18 15:53:36 EDT 2026 port directory: /usr/ports/biology/emboss package name: emboss-6.6.0_7 building for: FreeBSD pkg.DaveG.ca 15.0-RELEASE-p3 FreeBSD 15.0-RELEASE-p3 1500068 amd64 maintained by: wen@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1771 Aug 27 2024 /usr/ports/biology/emboss/Makefile Ports top last git commit: 8c988f802ea2 Ports top unclean checkout: no Port dir last git commit: ee6c86aea577 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1500068 Job Id: 02 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500068 UNAME_v=FreeBSD 15.0-RELEASE-p3 1500068 UNAME_r=15.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/02/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_15_0_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for emboss-6.6.0_7: DOCS=on: Build and/or install documentation MYSQL=off: MySQL database support X11=on: X11 (graphics) support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- wen@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --with-docroot=/usr/local/emboss/share/EMBOSS/doc --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local/emboss ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=/usr/local/bin/gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/emboss/work/.cache HOME=/wrkdirs/usr/ports/biology/emboss/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/emboss/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/emboss/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- OPENSSLBASE=/usr OPENSSLDIR=/etc/ssl OPENSSLINC=/usr/include OPENSSLLIB=/usr/lib MOTIFLIB="-L/usr/local/lib -lXm" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/emboss/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/emboss/work/.cache HOME=/wrkdirs/usr/ports/biology/emboss/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/emboss/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/emboss/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local/emboss LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local/emboss LIB32DIR=lib DOCSDIR="share/EMBOSS/doc" EXAMPLESDIR="share/examples/emboss" DATADIR="share/EMBOSS" WWWDIR="www/emboss" ETCDIR="etc/emboss" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local/emboss DATADIR=/usr/local/emboss/share/EMBOSS PREFIX=/usr/local/emboss LOCALBASE=/usr/local DATADIR=/usr/local/emboss/share/EMBOSS DOCSDIR=/usr/local/emboss/share/EMBOSS/doc EXAMPLESDIR=/usr/local/emboss/share/examples/emboss WWWDIR=/usr/local/emboss/www/emboss ETCDIR=/usr/local/emboss/etc/emboss --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> emboss-6.6.0_7 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.6.2.pkg [pkg.DaveG.ca] Installing pkg-2.6.2... [pkg.DaveG.ca] Extracting pkg-2.6.2: .......... done ===> emboss-6.6.0_7 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of emboss-6.6.0_7 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by emboss-6.6.0_7 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by emboss-6.6.0_7 for building => SHA256 Checksum OK for emboss/EMBOSS-6.6.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by emboss-6.6.0_7 for building ===> Extracting for emboss-6.6.0_7 ===> Fetching all distfiles required by emboss-6.6.0_7 for building => SHA256 Checksum OK for emboss/EMBOSS-6.6.0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for emboss-6.6.0_7 ===> Applying FreeBSD patches for emboss-6.6.0_7 from /usr/ports/biology/emboss/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> emboss-6.6.0_7 depends on executable: clustalw - not found ===> Installing existing package /packages/All/clustalw-2.1_3.pkg [pkg.DaveG.ca] Installing clustalw-2.1_3... [pkg.DaveG.ca] Extracting clustalw-2.1_3: .. done ===> emboss-6.6.0_7 depends on executable: clustalw - found ===> Returning to build of emboss-6.6.0_7 ===> emboss-6.6.0_7 depends on executable: primer3 - not found ===> Installing existing package /packages/All/primer3-2.3.6.pkg [pkg.DaveG.ca] Installing primer3-2.3.6... [pkg.DaveG.ca] Extracting primer3-2.3.6: . done ===== Message from primer3-2.3.6: -- ===> NOTICE: The primer3 port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> emboss-6.6.0_7 depends on executable: primer3 - found ===> Returning to build of emboss-6.6.0_7 ===> emboss-6.6.0_7 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [pkg.DaveG.ca] Installing gmake-4.4.1... [pkg.DaveG.ca] `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] Extracting gmake-4.4.1: .......... done ===> emboss-6.6.0_7 depends on package: gmake>=4.4.1 - found ===> Returning to build of emboss-6.6.0_7 ===> emboss-6.6.0_7 depends on file: /usr/local/libdata/pkgconfig/x11.pc - not found ===> Installing existing package /packages/All/libX11-1.8.13,1.pkg [pkg.DaveG.ca] Installing libX11-1.8.13,1... [pkg.DaveG.ca] `-- Installing libxcb-1.17.0... [pkg.DaveG.ca] | `-- Installing libXau-1.0.12... [pkg.DaveG.ca] | `-- Extracting libXau-1.0.12: .......... done [pkg.DaveG.ca] | `-- Installing libXdmcp-1.1.5... [pkg.DaveG.ca] | | `-- Installing xorgproto-2024.1... [pkg.DaveG.ca] | | `-- Extracting xorgproto-2024.1: .......... done [pkg.DaveG.ca] | `-- Extracting libXdmcp-1.1.5: ...... done [pkg.DaveG.ca] `-- Extracting libxcb-1.17.0: .......... done [pkg.DaveG.ca] Extracting libX11-1.8.13,1: .......... done ===> emboss-6.6.0_7 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> Returning to build of emboss-6.6.0_7 ===> emboss-6.6.0_7 depends on file: /usr/local/libdata/pkgconfig/xpm.pc - not found ===> Installing existing package /packages/All/libXpm-3.5.17_1.pkg [pkg.DaveG.ca] Installing libXpm-3.5.17_1... [pkg.DaveG.ca] `-- Installing libXext-1.3.6,1... [pkg.DaveG.ca] `-- Extracting libXext-1.3.6,1: .......... done [pkg.DaveG.ca] `-- Installing libXt-1.3.0,1... [pkg.DaveG.ca] | `-- Installing libICE-1.1.2,1... [pkg.DaveG.ca] | `-- Extracting libICE-1.1.2,1: .......... done [pkg.DaveG.ca] | `-- Installing libSM-1.2.6,1... [pkg.DaveG.ca] | `-- Extracting libSM-1.2.6,1: ........ done [pkg.DaveG.ca] `-- Extracting libXt-1.3.0,1: .......... done [pkg.DaveG.ca] Extracting libXpm-3.5.17_1: .......... done ===> emboss-6.6.0_7 depends on file: /usr/local/libdata/pkgconfig/xpm.pc - found ===> Returning to build of emboss-6.6.0_7 ===> emboss-6.6.0_7 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> emboss-6.6.0_7 depends on file: /usr/local/bin/ccache - found ===> Returning to build of emboss-6.6.0_7 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> emboss-6.6.0_7 depends on shared library: libgd.so - not found ===> Installing existing package /packages/All/libgd-2.3.3_13,1.pkg [pkg.DaveG.ca] Installing libgd-2.3.3_13,1... [pkg.DaveG.ca] `-- Installing fontconfig-2.17.1,1... [pkg.DaveG.ca] | `-- Installing expat-2.7.4... [pkg.DaveG.ca] | `-- Extracting expat-2.7.4: .......... done [pkg.DaveG.ca] | `-- Installing freetype2-2.14.1... [pkg.DaveG.ca] | | `-- Installing brotli-1.2.0,1... [pkg.DaveG.ca] | | `-- Extracting brotli-1.2.0,1: .......... done [pkg.DaveG.ca] | | `-- Installing png-1.6.55... [pkg.DaveG.ca] | | `-- Extracting png-1.6.55: .......... done [pkg.DaveG.ca] | `-- Extracting freetype2-2.14.1: .......... done [pkg.DaveG.ca] `-- Extracting fontconfig-2.17.1,1: .......... done [pkg.DaveG.ca] `-- Installing jpeg-turbo-3.1.3... [pkg.DaveG.ca] `-- Extracting jpeg-turbo-3.1.3: .......... done [pkg.DaveG.ca] `-- Installing tiff-4.7.1... [pkg.DaveG.ca] | `-- Installing jbigkit-2.1_3... [pkg.DaveG.ca] | `-- Extracting jbigkit-2.1_3: .......... done [pkg.DaveG.ca] | `-- Installing lerc-4.0.0... [pkg.DaveG.ca] | `-- Extracting lerc-4.0.0: ..... done [pkg.DaveG.ca] | `-- Installing libdeflate-1.25... [pkg.DaveG.ca] | `-- Extracting libdeflate-1.25: .......... done [pkg.DaveG.ca] | `-- Installing zstd-1.5.7_1... [pkg.DaveG.ca] | `-- Extracting zstd-1.5.7_1: .......... done [pkg.DaveG.ca] `-- Extracting tiff-4.7.1: .......... done [pkg.DaveG.ca] `-- Installing webp-1.6.0... [pkg.DaveG.ca] | `-- Installing giflib-5.2.2... [pkg.DaveG.ca] | `-- Extracting giflib-5.2.2: .......... done [pkg.DaveG.ca] `-- Extracting webp-1.6.0: .......... done [pkg.DaveG.ca] Extracting libgd-2.3.3_13,1: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ===== Message from freetype2-2.14.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===> emboss-6.6.0_7 depends on shared library: libgd.so - found (/usr/local/lib/libgd.so) ===> Returning to build of emboss-6.6.0_7 ===> emboss-6.6.0_7 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> emboss-6.6.0_7 depends on shared library: libgd.so - found (/usr/local/lib/libgd.so) ===> emboss-6.6.0_7 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> emboss-6.6.0_7 depends on shared library: libpq.so.5 - not found ===> Installing existing package /packages/All/postgresql15-client-15.17.pkg [pkg.DaveG.ca] Installing postgresql15-client-15.17... [pkg.DaveG.ca] `-- Installing readline-8.3.3... [pkg.DaveG.ca] `-- Extracting readline-8.3.3: .......... done [pkg.DaveG.ca] Extracting postgresql15-client-15.17: .......... done ===== Message from postgresql15-client-15.17: -- The PostgreSQL port has a collection of "side orders": postgresql-docs For all of the html documentation p5-Pg A perl5 API for client access to PostgreSQL databases. postgresql-tcltk If you want tcl/tk client support. postgresql-jdbc For Java JDBC support. postgresql-odbc For client access from unix applications using ODBC as access method. Not needed to access unix PostgreSQL servers from Win32 using ODBC. See below. ruby-postgres, py-psycopg For client access to PostgreSQL databases using the ruby & python languages. postgresql-plperl, postgresql-pltcl & postgresql-plruby For using perl5, tcl & ruby as procedural languages. postgresql-contrib Lots of contributed utilities, postgresql functions and datatypes. There you find pg_standby, pgcrypto and many other cool things. etc... ===> emboss-6.6.0_7 depends on shared library: libpq.so.5 - found (/usr/local/lib/libpq.so.5) ===> Returning to build of emboss-6.6.0_7 ===> emboss-6.6.0_7 depends on shared library: libXm.so.4 - not found ===> Installing existing package /packages/All/open-motif-2.3.8_8.pkg [pkg.DaveG.ca] Installing open-motif-2.3.8_8... [pkg.DaveG.ca] `-- Installing libXaw-1.0.16,2... [pkg.DaveG.ca] | `-- Installing libXmu-1.1.4,1... [pkg.DaveG.ca] | `-- Extracting libXmu-1.1.4,1: .......... done [pkg.DaveG.ca] `-- Extracting libXaw-1.0.16,2: .......... done [pkg.DaveG.ca] `-- Installing libXft-2.3.8... [pkg.DaveG.ca] | `-- Installing libXrender-0.9.12... [pkg.DaveG.ca] | `-- Extracting libXrender-0.9.12: ....... done [pkg.DaveG.ca] `-- Extracting libXft-2.3.8: .......... done [pkg.DaveG.ca] `-- Installing xbitmaps-1.1.3... [pkg.DaveG.ca] `-- Extracting xbitmaps-1.1.3: .......... done [pkg.DaveG.ca] Extracting open-motif-2.3.8_8: .......... done ===> emboss-6.6.0_7 depends on shared library: libXm.so.4 - found (/usr/local/lib/libXm.so.4) ===> Returning to build of emboss-6.6.0_7 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for emboss-6.6.0_7 configure: loading site script /usr/ports/Templates/config.site checking for gawk... (cached) /usr/bin/awk checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking how to run the C preprocessor... cpp checking for a BSD-compatible install... /usr/bin/install -c checking whether ln -s works... yes checking whether /usr/local/bin/gmake sets $(MAKE)... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking whether build environment is sane... yes checking for style of include used by /usr/local/bin/gmake... GNU checking dependency style of cc... gcc3 checking dependency style of c++... gcc3 checking build system type... amd64-portbld-freebsd15.0 checking host system type... amd64-portbld-freebsd15.0 checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... (cached) 524288 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking how to convert amd64-portbld-freebsd15.0 file names to amd64-portbld-freebsd15.0 format... func_convert_file_noop checking how to convert amd64-portbld-freebsd15.0 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from cc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... yes checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd15.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... c++ -E checking for ld used by c++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd15.0 ld.so checking how to hardcode library paths into programs... immediate checking for X... libraries /usr/local/lib, headers /usr/local/include checking whether -R must be followed by a space... neither works checking for gethostbyname... (cached) yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking TargetConfig.h usability... no checking TargetConfig.h presence... no checking for TargetConfig.h... no checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... (cached) yes checking for size_t... (cached) yes checking whether struct tm is in sys/time.h or time.h... time.h checking whether getpgrp requires zero arguments... (cached) yes checking for strftime... (cached) yes checking for vfork.h... (cached) no checking for fork... (cached) yes checking for vfork... (cached) yes checking for working fork... yes checking for working vfork... (cached) yes checking for vprintf... (cached) yes checking for _doprnt... no checking for memmove... (cached) yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for socket in -lc... yes checking for main in -lm... yes checking for main in ... yes checking if docroot is given... yes checking if gcc profiling is selected... no checking if gcov coverage is selected... no checking for EMBOSS pre-indexed databases... yes checking for Java JNI... no checking for Java JNI OS... no checking for authorisation type... no checking for threading type... no checking whether to look for pdf support... yes checking for HPDF_New in -lhpdf... no No pdf support (libhpdf) found. checking for pkg-config... no checking whether to look for axis2c support... no checking if png driver is wanted... yes checking for inflateEnd in -lz... yes checking for png_destroy_read_struct in -lpng... yes checking for gdImageCreateFromPng in -lgd... yes PNG libraries found checking for mysql_config... no checking for pg_config... /usr/local/bin/pg_config checking for PostgreSQL libraries... yes checking for large file support... yes checking for purify... no checking for cygwin... no checking for savestats... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating ajax/Makefile config.status: creating ajax/acd/Makefile config.status: creating ajax/ajaxdb/Makefile config.status: creating ajax/core/Makefile config.status: creating ajax/ensembl/Makefile config.status: creating ajax/expat/Makefile config.status: creating ajax/graphics/Makefile config.status: creating ajax/pcre/Makefile config.status: creating ajax/zlib/Makefile config.status: creating doc/Makefile config.status: creating doc/manuals/Makefile config.status: creating doc/programs/Makefile config.status: creating doc/programs/html/Makefile config.status: creating doc/programs/text/Makefile config.status: creating doc/tutorials/Makefile config.status: creating emboss/Makefile config.status: creating emboss/acd/Makefile config.status: creating emboss/data/AAINDEX/Makefile config.status: creating emboss/data/CODONS/Makefile config.status: creating emboss/data/JASPAR_CNE/Makefile config.status: creating emboss/data/JASPAR_CORE/Makefile config.status: creating emboss/data/JASPAR_FAM/Makefile config.status: creating emboss/data/JASPAR_PBM/Makefile config.status: creating emboss/data/JASPAR_PBM_HLH/Makefile config.status: creating emboss/data/JASPAR_PBM_HOMEO/Makefile config.status: creating emboss/data/JASPAR_PHYLOFACTS/Makefile config.status: creating emboss/data/JASPAR_POLII/Makefile config.status: creating emboss/data/JASPAR_SPLICE/Makefile config.status: creating emboss/data/Makefile config.status: creating emboss/data/OBO/Makefile config.status: creating emboss/data/PRINTS/Makefile config.status: creating emboss/data/PROSITE/Makefile config.status: creating emboss/data/REBASE/Makefile config.status: creating emboss/data/TAXONOMY/Makefile config.status: creating emboss/index/Makefile config.status: creating jemboss/Makefile config.status: creating jemboss/runJemboss.sh config.status: creating jemboss/images/Makefile config.status: creating jemboss/lib/Makefile config.status: creating jemboss/lib/axis/Makefile config.status: creating jemboss/resources/Makefile config.status: creating jemboss/utils/Makefile config.status: creating nucleus/Makefile config.status: creating plplot/Makefile config.status: creating plplot/lib/Makefile config.status: creating test/Makefile config.status: creating test/data/Makefile config.status: creating test/embl/Makefile config.status: creating test/genbank/Makefile config.status: creating test/pir/Makefile config.status: creating test/swiss/Makefile config.status: creating test/swnew/Makefile config.status: creating test/testdb/Makefile config.status: creating ajax/core/config.h config.status: executing depfiles commands config.status: executing libtool commands =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for emboss-6.6.0_7 Making all in plplot gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot' Making all in lib gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot/lib' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot/lib' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot' /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pdfutils.lo -MD -MP -MF .deps/pdfutils.Tpo -c -o pdfutils.lo pdfutils.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plargs.lo -MD -MP -MF .deps/plargs.Tpo -c -o plargs.lo plargs.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plbox.lo -MD -MP -MF .deps/plbox.Tpo -c -o plbox.lo plbox.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plcont.lo -MD -MP -MF .deps/plcont.Tpo -c -o plcont.lo plcont.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plcore.lo -MD -MP -MF .deps/plcore.Tpo -c -o plcore.lo plcore.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plctrl.lo -MD -MP -MF .deps/plctrl.Tpo -c -o plctrl.lo plctrl.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plcvt.lo -MD -MP -MF .deps/plcvt.Tpo -c -o plcvt.lo plcvt.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pldtik.lo -MD -MP -MF .deps/pldtik.Tpo -c -o pldtik.lo pldtik.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plfill.lo -MD -MP -MF .deps/plfill.Tpo -c -o plfill.lo plfill.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plhist.lo -MD -MP -MF .deps/plhist.Tpo -c -o plhist.lo plhist.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plline.lo -MD -MP -MF .deps/plline.Tpo -c -o plline.lo plline.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plmap.lo -MD -MP -MF .deps/plmap.Tpo -c -o plmap.lo plmap.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plot3d.lo -MD -MP -MF .deps/plot3d.Tpo -c -o plot3d.lo plot3d.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plpage.lo -MD -MP -MF .deps/plpage.Tpo -c -o plpage.lo plpage.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plsdef.lo -MD -MP -MF .deps/plsdef.Tpo -c -o plsdef.lo plsdef.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plshade.lo -MD -MP -MF .deps/plshade.Tpo -c -o plshade.lo plshade.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plsym.lo -MD -MP -MF .deps/plsym.Tpo -c -o plsym.lo plsym.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pltick.lo -MD -MP -MF .deps/pltick.Tpo -c -o pltick.lo pltick.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plvpor.lo -MD -MP -MF .deps/plvpor.Tpo -c -o plvpor.lo plvpor.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plwind.lo -MD -MP -MF .deps/plwind.Tpo -c -o plwind.lo plwind.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plstripc.lo -MD -MP -MF .deps/plstripc.Tpo -c -o plstripc.lo plstripc.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT hpgl.lo -MD -MP -MF .deps/hpgl.Tpo -c -o hpgl.lo hpgl.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT impress.lo -MD -MP -MF .deps/impress.Tpo -c -o impress.lo impress.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ljiip.lo -MD -MP -MF .deps/ljiip.Tpo -c -o ljiip.lo ljiip.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ljii.lo -MD -MP -MF .deps/ljii.Tpo -c -o ljii.lo ljii.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT null.lo -MD -MP -MF .deps/null.Tpo -c -o null.lo null.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT data.lo -MD -MP -MF .deps/data.Tpo -c -o data.lo data.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pbm.lo -MD -MP -MF .deps/pbm.Tpo -c -o pbm.lo pbm.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plbuf.lo -MD -MP -MF .deps/plbuf.Tpo -c -o plbuf.lo plbuf.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plmeta.lo -MD -MP -MF .deps/plmeta.Tpo -c -o plmeta.lo plmeta.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ps.lo -MD -MP -MF .deps/ps.Tpo -c -o ps.lo ps.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT tek.lo -MD -MP -MF .deps/tek.Tpo -c -o tek.lo tek.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xfig.lo -MD -MP -MF .deps/xfig.Tpo -c -o xfig.lo xfig.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xwin.lo -MD -MP -MF .deps/xwin.Tpo -c -o xwin.lo xwin.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT gd.lo -MD -MP -MF .deps/gd.Tpo -c -o gd.lo gd.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pdf.lo -MD -MP -MF .deps/pdf.Tpo -c -o pdf.lo pdf.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT svg.lo -MD -MP -MF .deps/svg.Tpo -c -o svg.lo svg.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plimage.lo -MD -MP -MF .deps/plimage.Tpo -c -o plimage.lo plimage.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plstdio.lo -MD -MP -MF .deps/plstdio.Tpo -c -o plstdio.lo plstdio.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plvect.lo -MD -MP -MF .deps/plvect.Tpo -c -o plvect.lo plvect.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plargs.lo -MD -MP -MF .deps/plargs.Tpo -c plargs.c -fPIC -DPIC -o .libs/plargs.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plcore.lo -MD -MP -MF .deps/plcore.Tpo -c plcore.c -fPIC -DPIC -o .libs/plcore.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plbox.lo -MD -MP -MF .deps/plbox.Tpo -c plbox.c -fPIC -DPIC -o .libs/plbox.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plctrl.lo -MD -MP -MF .deps/plctrl.Tpo -c plctrl.c -fPIC -DPIC -o .libs/plctrl.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plcont.lo -MD -MP -MF .deps/plcont.Tpo -c plcont.c -fPIC -DPIC -o .libs/plcont.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pdfutils.lo -MD -MP -MF .deps/pdfutils.Tpo -c pdfutils.c -fPIC -DPIC -o .libs/pdfutils.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plcvt.lo -MD -MP -MF .deps/plcvt.Tpo -c plcvt.c -fPIC -DPIC -o .libs/plcvt.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plfill.lo -MD -MP -MF .deps/plfill.Tpo -c plfill.c -fPIC -DPIC -o .libs/plfill.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plhist.lo -MD -MP -MF .deps/plhist.Tpo -c plhist.c -fPIC -DPIC -o .libs/plhist.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plot3d.lo -MD -MP -MF .deps/plot3d.Tpo -c plot3d.c -fPIC -DPIC -o .libs/plot3d.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plpage.lo -MD -MP -MF .deps/plpage.Tpo -c plpage.c -fPIC -DPIC -o .libs/plpage.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pldtik.lo -MD -MP -MF .deps/pldtik.Tpo -c pldtik.c -fPIC -DPIC -o .libs/pldtik.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plsdef.lo -MD -MP -MF .deps/plsdef.Tpo -c plsdef.c -fPIC -DPIC -o .libs/plsdef.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plmap.lo -MD -MP -MF .deps/plmap.Tpo -c plmap.c -fPIC -DPIC -o .libs/plmap.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plshade.lo -MD -MP -MF .deps/plshade.Tpo -c plshade.c -fPIC -DPIC -o .libs/plshade.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plwind.lo -MD -MP -MF .deps/plwind.Tpo -c plwind.c -fPIC -DPIC -o .libs/plwind.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pltick.lo -MD -MP -MF .deps/pltick.Tpo -c pltick.c -fPIC -DPIC -o .libs/pltick.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plvpor.lo -MD -MP -MF .deps/plvpor.Tpo -c plvpor.c -fPIC -DPIC -o .libs/plvpor.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plstripc.lo -MD -MP -MF .deps/plstripc.Tpo -c plstripc.c -fPIC -DPIC -o .libs/plstripc.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plline.lo -MD -MP -MF .deps/plline.Tpo -c plline.c -fPIC -DPIC -o .libs/plline.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT impress.lo -MD -MP -MF .deps/impress.Tpo -c impress.c -fPIC -DPIC -o .libs/impress.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT null.lo -MD -MP -MF .deps/null.Tpo -c null.c -fPIC -DPIC -o .libs/null.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT hpgl.lo -MD -MP -MF .deps/hpgl.Tpo -c hpgl.c -fPIC -DPIC -o .libs/hpgl.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ljii.lo -MD -MP -MF .deps/ljii.Tpo -c ljii.c -fPIC -DPIC -o .libs/ljii.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plsym.lo -MD -MP -MF .deps/plsym.Tpo -c plsym.c -fPIC -DPIC -o .libs/plsym.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ljiip.lo -MD -MP -MF .deps/ljiip.Tpo -c ljiip.c -fPIC -DPIC -o .libs/ljiip.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ps.lo -MD -MP -MF .deps/ps.Tpo -c ps.c -fPIC -DPIC -o .libs/ps.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plargs.lo -MD -MP -MF .deps/plargs.Tpo -c plargs.c -o plargs.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT gd.lo -MD -MP -MF .deps/gd.Tpo -c gd.c -fPIC -DPIC -o .libs/gd.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pdf.lo -MD -MP -MF .deps/pdf.Tpo -c pdf.c -fPIC -DPIC -o .libs/pdf.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT data.lo -MD -MP -MF .deps/data.Tpo -c data.c -fPIC -DPIC -o .libs/data.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pbm.lo -MD -MP -MF .deps/pbm.Tpo -c pbm.c -fPIC -DPIC -o .libs/pbm.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plstdio.lo -MD -MP -MF .deps/plstdio.Tpo -c plstdio.c -fPIC -DPIC -o .libs/plstdio.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT svg.lo -MD -MP -MF .deps/svg.Tpo -c svg.c -fPIC -DPIC -o .libs/svg.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plbuf.lo -MD -MP -MF .deps/plbuf.Tpo -c plbuf.c -fPIC -DPIC -o .libs/plbuf.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT tek.lo -MD -MP -MF .deps/tek.Tpo -c tek.c -fPIC -DPIC -o .libs/tek.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plctrl.lo -MD -MP -MF .deps/plctrl.Tpo -c plctrl.c -o plctrl.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plmeta.lo -MD -MP -MF .deps/plmeta.Tpo -c plmeta.c -fPIC -DPIC -o .libs/plmeta.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plbox.lo -MD -MP -MF .deps/plbox.Tpo -c plbox.c -o plbox.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xwin.lo -MD -MP -MF .deps/xwin.Tpo -c xwin.c -fPIC -DPIC -o .libs/xwin.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plimage.lo -MD -MP -MF .deps/plimage.Tpo -c plimage.c -fPIC -DPIC -o .libs/plimage.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pdfutils.lo -MD -MP -MF .deps/pdfutils.Tpo -c pdfutils.c -o pdfutils.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plcvt.lo -MD -MP -MF .deps/plcvt.Tpo -c plcvt.c -o plcvt.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xfig.lo -MD -MP -MF .deps/xfig.Tpo -c xfig.c -fPIC -DPIC -o .libs/xfig.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plcont.lo -MD -MP -MF .deps/plcont.Tpo -c plcont.c -o plcont.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plvect.lo -MD -MP -MF .deps/plvect.Tpo -c plvect.c -fPIC -DPIC -o .libs/plvect.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plwind.lo -MD -MP -MF .deps/plwind.Tpo -c plwind.c -o plwind.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plsdef.lo -MD -MP -MF .deps/plsdef.Tpo -c plsdef.c -o plsdef.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plstripc.lo -MD -MP -MF .deps/plstripc.Tpo -c plstripc.c -o plstripc.o >/dev/null 2>&1 plbuf.c:944:61: warning: while loop has empty body [-Wempty-body] 944 | while (pls->plbuf_top + buf_size >= pls->plbuf_buffer_size); | ^ plbuf.c:944:61: note: put the semicolon on a separate line to silence this warning 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pldtik.lo -MD -MP -MF .deps/pldtik.Tpo -c pldtik.c -o pldtik.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pltick.lo -MD -MP -MF .deps/pltick.Tpo -c pltick.c -o pltick.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT impress.lo -MD -MP -MF .deps/impress.Tpo -c impress.c -o impress.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plvpor.lo -MD -MP -MF .deps/plvpor.Tpo -c plvpor.c -o plvpor.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plmap.lo -MD -MP -MF .deps/plmap.Tpo -c plmap.c -o plmap.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT hpgl.lo -MD -MP -MF .deps/hpgl.Tpo -c hpgl.c -o hpgl.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plshade.lo -MD -MP -MF .deps/plshade.Tpo -c plshade.c -o plshade.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT null.lo -MD -MP -MF .deps/null.Tpo -c null.c -o null.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plsym.lo -MD -MP -MF .deps/plsym.Tpo -c plsym.c -o plsym.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pdf.lo -MD -MP -MF .deps/pdf.Tpo -c pdf.c -o pdf.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plline.lo -MD -MP -MF .deps/plline.Tpo -c plline.c -o plline.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ljii.lo -MD -MP -MF .deps/ljii.Tpo -c ljii.c -o ljii.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ps.lo -MD -MP -MF .deps/ps.Tpo -c ps.c -o ps.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ljiip.lo -MD -MP -MF .deps/ljiip.Tpo -c ljiip.c -o ljiip.o >/dev/null 2>&1 mv -f .deps/plargs.Tpo .deps/plargs.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pbm.lo -MD -MP -MF .deps/pbm.Tpo -c pbm.c -o pbm.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plstdio.lo -MD -MP -MF .deps/plstdio.Tpo -c plstdio.c -o plstdio.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plbuf.lo -MD -MP -MF .deps/plbuf.Tpo -c plbuf.c -o plbuf.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT data.lo -MD -MP -MF .deps/data.Tpo -c data.c -o data.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plmeta.lo -MD -MP -MF .deps/plmeta.Tpo -c plmeta.c -o plmeta.o >/dev/null 2>&1 mv -f .deps/plctrl.Tpo .deps/plctrl.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xfig.lo -MD -MP -MF .deps/xfig.Tpo -c xfig.c -o xfig.o >/dev/null 2>&1 plot3d.c:933:54: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand] 933 | if ((opt & BASE_CONT) || (opt & TOP_CONT) || (opt && MAG_COLOR)) { | ^ ~~~~~~~~~ plot3d.c:933:54: note: use '&' for a bitwise operation 933 | if ((opt & BASE_CONT) || (opt & TOP_CONT) || (opt && MAG_COLOR)) { | ^~ | & plot3d.c:933:54: note: remove constant to silence this warning 933 | if ((opt & BASE_CONT) || (opt & TOP_CONT) || (opt && MAG_COLOR)) { | ^~~~~~~~~~~~ plot3d.c:933:57: warning: converting the result of '<<' to a boolean always evaluates to true [-Wtautological-constant-compare] 933 | if ((opt & BASE_CONT) || (opt & TOP_CONT) || (opt && MAG_COLOR)) { | ^ ./plplot.h:1114:24: note: expanded from macro 'MAG_COLOR' 1114 | #define MAG_COLOR (1 << 2) /* draw the mesh with a color dependent of the magnitude */ | ^ 2 warnings generated. mv -f .deps/plcvt.Tpo .deps/plcvt.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plimage.lo -MD -MP -MF .deps/plimage.Tpo -c plimage.c -o plimage.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plvect.lo -MD -MP -MF .deps/plvect.Tpo -c plvect.c -o plvect.o >/dev/null 2>&1 mv -f .deps/plcont.Tpo .deps/plcont.Plo mv -f .deps/plbox.Tpo .deps/plbox.Plo plpage.c:162:22: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand] 162 | if (plsc->difilt && PLDI_ORI) { | ^ ~~~~~~~~ plpage.c:162:22: note: use '&' for a bitwise operation 162 | if (plsc->difilt && PLDI_ORI) { | ^~ | & plpage.c:162:22: note: remove constant to silence this warning 162 | if (plsc->difilt && PLDI_ORI) { | ^~~~~~~~~~~ 1 warning generated. mv -f .deps/pltick.Tpo .deps/pltick.Plo mv -f .deps/plshade.Tpo .deps/plshade.Plo mv -f .deps/hpgl.Tpo .deps/hpgl.Plo mv -f .deps/plvpor.Tpo .deps/plvpor.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plot3d.lo -MD -MP -MF .deps/plot3d.Tpo -c plot3d.c -o plot3d.o >/dev/null 2>&1 mv -f .deps/pldtik.Tpo .deps/pldtik.Plo mv -f .deps/pdfutils.Tpo .deps/pdfutils.Plo mv -f .deps/ljii.Tpo .deps/ljii.Plo mv -f .deps/ps.Tpo .deps/ps.Plo mv -f .deps/plline.Tpo .deps/plline.Plo mv -f .deps/plstdio.Tpo .deps/plstdio.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plpage.lo -MD -MP -MF .deps/plpage.Tpo -c plpage.c -o plpage.o >/dev/null 2>&1 mv -f .deps/pbm.Tpo .deps/pbm.Plo mv -f .deps/data.Tpo .deps/data.Plo mv -f .deps/plmeta.Tpo .deps/plmeta.Plo mv -f .deps/ljiip.Tpo .deps/ljiip.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plfill.lo -MD -MP -MF .deps/plfill.Tpo -c plfill.c -o plfill.o >/dev/null 2>&1 mv -f .deps/plimage.Tpo .deps/plimage.Plo mv -f .deps/plvect.Tpo .deps/plvect.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plhist.lo -MD -MP -MF .deps/plhist.Tpo -c plhist.c -o plhist.o >/dev/null 2>&1 mv -f .deps/plwind.Tpo .deps/plwind.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plcore.lo -MD -MP -MF .deps/plcore.Tpo -c plcore.c -o plcore.o >/dev/null 2>&1 mv -f .deps/plsym.Tpo .deps/plsym.Plo mv -f .deps/plhist.Tpo .deps/plhist.Plo mv -f .deps/plcore.Tpo .deps/plcore.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT svg.lo -MD -MP -MF .deps/svg.Tpo -c svg.c -o svg.o >/dev/null 2>&1 mv -f .deps/plstripc.Tpo .deps/plstripc.Plo mv -f .deps/plsdef.Tpo .deps/plsdef.Plo mv -f .deps/svg.Tpo .deps/svg.Plo mv -f .deps/plfill.Tpo .deps/plfill.Plo mv -f .deps/xfig.Tpo .deps/xfig.Plo mv -f .deps/plpage.Tpo .deps/plpage.Plo mv -f .deps/plmap.Tpo .deps/plmap.Plo mv -f .deps/null.Tpo .deps/null.Plo mv -f .deps/impress.Tpo .deps/impress.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT tek.lo -MD -MP -MF .deps/tek.Tpo -c tek.c -o tek.o >/dev/null 2>&1 mv -f .deps/tek.Tpo .deps/tek.Plo mv -f .deps/plbuf.Tpo .deps/plbuf.Plo mv -f .deps/pdf.Tpo .deps/pdf.Plo mv -f .deps/plot3d.Tpo .deps/plot3d.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xwin.lo -MD -MP -MF .deps/xwin.Tpo -c xwin.c -o xwin.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/core -I/usr/local/include -I./ -I/usr/include/gd -DPREFIX=\"/usr/local/emboss\" -DBUILD_DIR=\".\" -DDRV_DIR=\".\" -DEMBOSS_TOP=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT gd.lo -MD -MP -MF .deps/gd.Tpo -c gd.c -o gd.o >/dev/null 2>&1 mv -f .deps/xwin.Tpo .deps/xwin.Plo mv -f .deps/gd.Tpo .deps/gd.Plo /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -version-info 5:7:2 -L/usr/local/lib -L/usr/local/lib -o libeplplot.la -rpath /usr/local/emboss/lib pdfutils.lo plargs.lo plbox.lo plcont.lo plcore.lo plctrl.lo plcvt.lo pldtik.lo plfill.lo plhist.lo plline.lo plmap.lo plot3d.lo plpage.lo plsdef.lo plshade.lo plsym.lo pltick.lo plvpor.lo plwind.lo plstripc.lo hpgl.lo impress.lo ljiip.lo ljii.lo null.lo data.lo pbm.lo plbuf.lo plmeta.lo ps.lo tek.lo xfig.lo xwin.lo gd.lo pdf.lo svg.lo plimage.lo plstdio.lo plvect.lo -lm -lgd -lpng -lz -lm libtool: link: cc -shared -fPIC -DPIC .libs/pdfutils.o .libs/plargs.o .libs/plbox.o .libs/plcont.o .libs/plcore.o .libs/plctrl.o .libs/plcvt.o .libs/pldtik.o .libs/plfill.o .libs/plhist.o .libs/plline.o .libs/plmap.o .libs/plot3d.o .libs/plpage.o .libs/plsdef.o .libs/plshade.o .libs/plsym.o .libs/pltick.o .libs/plvpor.o .libs/plwind.o .libs/plstripc.o .libs/hpgl.o .libs/impress.o .libs/ljiip.o .libs/ljii.o .libs/null.o .libs/data.o .libs/pbm.o .libs/plbuf.o .libs/plmeta.o .libs/ps.o .libs/tek.o .libs/xfig.o .libs/xwin.o .libs/gd.o .libs/pdf.o .libs/svg.o .libs/plimage.o .libs/plstdio.o .libs/plvect.o -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib /usr/local/lib/libgd.so -lpng -lz -lm -O2 -fstack-protector-strong -O2 -Wl,-soname -Wl,libeplplot.so.3 -o .libs/libeplplot.so.3.2.7 libtool: link: (cd ".libs" && rm -f "libeplplot.so.3" && ln -s "libeplplot.so.3.2.7" "libeplplot.so.3") libtool: link: (cd ".libs" && rm -f "libeplplot.so" && ln -s "libeplplot.so.3.2.7" "libeplplot.so") libtool: link: ar cru .libs/libeplplot.a pdfutils.o plargs.o plbox.o plcont.o plcore.o plctrl.o plcvt.o pldtik.o plfill.o plhist.o plline.o plmap.o plot3d.o plpage.o plsdef.o plshade.o plsym.o pltick.o plvpor.o plwind.o plstripc.o hpgl.o impress.o ljiip.o ljii.o null.o data.o pbm.o plbuf.o plmeta.o ps.o tek.o xfig.o xwin.o gd.o pdf.o svg.o plimage.o plstdio.o plvect.o libtool: link: ranlib .libs/libeplplot.a libtool: link: ( cd ".libs" && rm -f "libeplplot.la" && ln -s "../libeplplot.la" "libeplplot.la" ) gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot' Making all in ajax gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' Making all in pcre gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/pcre' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_chartables.lo -MD -MP -MF .deps/libepcre_la-pcre_chartables.Tpo -c -o libepcre_la-pcre_chartables.lo `test -f 'pcre_chartables.c' || echo './'`pcre_chartables.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_compile.lo -MD -MP -MF .deps/libepcre_la-pcre_compile.Tpo -c -o libepcre_la-pcre_compile.lo `test -f 'pcre_compile.c' || echo './'`pcre_compile.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_dfa_exec.lo -MD -MP -MF .deps/libepcre_la-pcre_dfa_exec.Tpo -c -o libepcre_la-pcre_dfa_exec.lo `test -f 'pcre_dfa_exec.c' || echo './'`pcre_dfa_exec.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_exec.lo -MD -MP -MF .deps/libepcre_la-pcre_exec.Tpo -c -o libepcre_la-pcre_exec.lo `test -f 'pcre_exec.c' || echo './'`pcre_exec.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include 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'./'`pcreposix.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_study.lo -MD -MP -MF .deps/libepcre_la-pcre_study.Tpo -c -o libepcre_la-pcre_study.lo `test -f 'pcre_study.c' || echo './'`pcre_study.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_tables.lo -MD -MP -MF .deps/libepcre_la-pcre_tables.Tpo -c -o libepcre_la-pcre_tables.lo `test -f 'pcre_tables.c' || echo './'`pcre_tables.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_try_flipped.lo -MD -MP -MF .deps/libepcre_la-pcre_try_flipped.Tpo -c -o libepcre_la-pcre_try_flipped.lo `test -f 'pcre_try_flipped.c' || echo './'`pcre_try_flipped.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_version.lo -MD -MP -MF .deps/libepcre_la-pcre_version.Tpo -c -o libepcre_la-pcre_version.lo `test -f 'pcre_version.c' || echo './'`pcre_version.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_xclass.lo -MD -MP -MF .deps/libepcre_la-pcre_xclass.Tpo -c -o libepcre_la-pcre_xclass.lo `test -f 'pcre_xclass.c' || echo './'`pcre_xclass.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_chartables.lo -MD -MP -MF .deps/libepcre_la-pcre_chartables.Tpo -c pcre_chartables.c -fPIC -DPIC -o .libs/libepcre_la-pcre_chartables.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_compile.lo -MD -MP -MF .deps/libepcre_la-pcre_compile.Tpo -c pcre_compile.c -fPIC -DPIC -o .libs/libepcre_la-pcre_compile.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_dfa_exec.lo -MD -MP -MF .deps/libepcre_la-pcre_dfa_exec.Tpo -c pcre_dfa_exec.c -fPIC -DPIC -o .libs/libepcre_la-pcre_dfa_exec.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_fullinfo.lo -MD -MP -MF .deps/libepcre_la-pcre_fullinfo.Tpo -c pcre_fullinfo.c -fPIC -DPIC -o .libs/libepcre_la-pcre_fullinfo.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_exec.lo -MD -MP -MF .deps/libepcre_la-pcre_exec.Tpo -c pcre_exec.c -fPIC -DPIC -o .libs/libepcre_la-pcre_exec.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_get.lo -MD -MP -MF .deps/libepcre_la-pcre_get.Tpo -c pcre_get.c -fPIC -DPIC -o .libs/libepcre_la-pcre_get.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_newline.lo -MD -MP -MF .deps/libepcre_la-pcre_newline.Tpo -c pcre_newline.c -fPIC -DPIC -o .libs/libepcre_la-pcre_newline.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_globals.lo -MD -MP -MF .deps/libepcre_la-pcre_globals.Tpo -c pcre_globals.c -fPIC -DPIC -o .libs/libepcre_la-pcre_globals.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_info.lo -MD -MP -MF .deps/libepcre_la-pcre_info.Tpo -c pcre_info.c -fPIC -DPIC -o .libs/libepcre_la-pcre_info.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_version.lo -MD -MP -MF .deps/libepcre_la-pcre_version.Tpo -c pcre_version.c -fPIC -DPIC -o .libs/libepcre_la-pcre_version.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_tables.lo -MD -MP -MF .deps/libepcre_la-pcre_tables.Tpo -c pcre_tables.c -fPIC -DPIC -o .libs/libepcre_la-pcre_tables.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_study.lo -MD -MP -MF .deps/libepcre_la-pcre_study.Tpo -c pcre_study.c -fPIC -DPIC -o .libs/libepcre_la-pcre_study.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcreposix.lo -MD -MP -MF .deps/libepcre_la-pcreposix.Tpo -c pcreposix.c -fPIC -DPIC -o .libs/libepcre_la-pcreposix.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_try_flipped.lo -MD -MP -MF .deps/libepcre_la-pcre_try_flipped.Tpo -c pcre_try_flipped.c -fPIC -DPIC -o .libs/libepcre_la-pcre_try_flipped.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_xclass.lo -MD -MP -MF .deps/libepcre_la-pcre_xclass.Tpo -c pcre_xclass.c -fPIC -DPIC -o .libs/libepcre_la-pcre_xclass.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_fullinfo.lo -MD -MP -MF .deps/libepcre_la-pcre_fullinfo.Tpo -c pcre_fullinfo.c -o libepcre_la-pcre_fullinfo.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_compile.lo -MD -MP -MF .deps/libepcre_la-pcre_compile.Tpo -c pcre_compile.c -o libepcre_la-pcre_compile.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_dfa_exec.lo -MD -MP -MF .deps/libepcre_la-pcre_dfa_exec.Tpo -c pcre_dfa_exec.c -o libepcre_la-pcre_dfa_exec.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_globals.lo -MD -MP -MF .deps/libepcre_la-pcre_globals.Tpo -c pcre_globals.c -o libepcre_la-pcre_globals.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_study.lo -MD -MP -MF .deps/libepcre_la-pcre_study.Tpo -c pcre_study.c -o libepcre_la-pcre_study.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_get.lo -MD -MP -MF .deps/libepcre_la-pcre_get.Tpo -c pcre_get.c -o libepcre_la-pcre_get.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_tables.lo -MD -MP -MF .deps/libepcre_la-pcre_tables.Tpo -c pcre_tables.c -o libepcre_la-pcre_tables.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_info.lo -MD -MP -MF .deps/libepcre_la-pcre_info.Tpo -c pcre_info.c -o libepcre_la-pcre_info.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcreposix.lo -MD -MP -MF .deps/libepcre_la-pcreposix.Tpo -c pcreposix.c -o libepcre_la-pcreposix.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_try_flipped.lo -MD -MP -MF .deps/libepcre_la-pcre_try_flipped.Tpo -c pcre_try_flipped.c -o libepcre_la-pcre_try_flipped.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_xclass.lo -MD -MP -MF .deps/libepcre_la-pcre_xclass.Tpo -c pcre_xclass.c -o libepcre_la-pcre_xclass.o >/dev/null 2>&1 mv -f .deps/libepcre_la-pcre_info.Tpo .deps/libepcre_la-pcre_info.Plo mv -f .deps/libepcre_la-pcreposix.Tpo .deps/libepcre_la-pcreposix.Plo mv -f .deps/libepcre_la-pcre_tables.Tpo .deps/libepcre_la-pcre_tables.Plo mv -f .deps/libepcre_la-pcre_try_flipped.Tpo .deps/libepcre_la-pcre_try_flipped.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_chartables.lo -MD -MP -MF .deps/libepcre_la-pcre_chartables.Tpo -c pcre_chartables.c -o libepcre_la-pcre_chartables.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_newline.lo -MD -MP -MF .deps/libepcre_la-pcre_newline.Tpo -c pcre_newline.c -o libepcre_la-pcre_newline.o >/dev/null 2>&1 mv -f .deps/libepcre_la-pcre_study.Tpo .deps/libepcre_la-pcre_study.Plo mv -f .deps/libepcre_la-pcre_newline.Tpo .deps/libepcre_la-pcre_newline.Plo mv -f .deps/libepcre_la-pcre_dfa_exec.Tpo .deps/libepcre_la-pcre_dfa_exec.Plo mv -f .deps/libepcre_la-pcre_get.Tpo .deps/libepcre_la-pcre_get.Plo mv -f .deps/libepcre_la-pcre_xclass.Tpo .deps/libepcre_la-pcre_xclass.Plo mv -f .deps/libepcre_la-pcre_compile.Tpo .deps/libepcre_la-pcre_compile.Plo mv -f .deps/libepcre_la-pcre_chartables.Tpo .deps/libepcre_la-pcre_chartables.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_exec.lo -MD -MP -MF .deps/libepcre_la-pcre_exec.Tpo -c pcre_exec.c -o libepcre_la-pcre_exec.o >/dev/null 2>&1 mv -f .deps/libepcre_la-pcre_globals.Tpo .deps/libepcre_la-pcre_globals.Plo mv -f .deps/libepcre_la-pcre_exec.Tpo .deps/libepcre_la-pcre_exec.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DPOSIX_MALLOC_THRESHOLD=10 -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libepcre_la-pcre_version.lo -MD -MP -MF .deps/libepcre_la-pcre_version.Tpo -c pcre_version.c -o libepcre_la-pcre_version.o >/dev/null 2>&1 mv -f .deps/libepcre_la-pcre_version.Tpo .deps/libepcre_la-pcre_version.Plo mv -f .deps/libepcre_la-pcre_fullinfo.Tpo .deps/libepcre_la-pcre_fullinfo.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -version-info 7:9:0 -L/usr/local/lib -L/usr/local/lib -o libepcre.la -rpath /usr/local/emboss/lib libepcre_la-pcre_chartables.lo libepcre_la-pcre_compile.lo libepcre_la-pcre_dfa_exec.lo libepcre_la-pcre_exec.lo libepcre_la-pcre_fullinfo.lo libepcre_la-pcre_get.lo libepcre_la-pcre_globals.lo libepcre_la-pcre_info.lo libepcre_la-pcre_newline.lo libepcre_la-pcreposix.lo libepcre_la-pcre_study.lo libepcre_la-pcre_tables.lo libepcre_la-pcre_try_flipped.lo libepcre_la-pcre_version.lo libepcre_la-pcre_xclass.lo -lm -lgd -lpng -lz -lm libtool: link: cc -shared -fPIC -DPIC .libs/libepcre_la-pcre_chartables.o .libs/libepcre_la-pcre_compile.o .libs/libepcre_la-pcre_dfa_exec.o .libs/libepcre_la-pcre_exec.o .libs/libepcre_la-pcre_fullinfo.o .libs/libepcre_la-pcre_get.o .libs/libepcre_la-pcre_globals.o .libs/libepcre_la-pcre_info.o .libs/libepcre_la-pcre_newline.o .libs/libepcre_la-pcreposix.o .libs/libepcre_la-pcre_study.o .libs/libepcre_la-pcre_tables.o .libs/libepcre_la-pcre_try_flipped.o .libs/libepcre_la-pcre_version.o .libs/libepcre_la-pcre_xclass.o -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib /usr/local/lib/libgd.so -lpng -lz -lm -O2 -fstack-protector-strong -O2 -Wl,-soname -Wl,libepcre.so.7 -o .libs/libepcre.so.7.0.9 libtool: link: (cd ".libs" && rm -f "libepcre.so.7" && ln -s "libepcre.so.7.0.9" "libepcre.so.7") libtool: link: (cd ".libs" && rm -f "libepcre.so" && ln -s "libepcre.so.7.0.9" "libepcre.so") libtool: link: ar cru .libs/libepcre.a libepcre_la-pcre_chartables.o libepcre_la-pcre_compile.o libepcre_la-pcre_dfa_exec.o libepcre_la-pcre_exec.o libepcre_la-pcre_fullinfo.o libepcre_la-pcre_get.o libepcre_la-pcre_globals.o libepcre_la-pcre_info.o libepcre_la-pcre_newline.o libepcre_la-pcreposix.o libepcre_la-pcre_study.o libepcre_la-pcre_tables.o libepcre_la-pcre_try_flipped.o libepcre_la-pcre_version.o libepcre_la-pcre_xclass.o libtool: link: ranlib .libs/libepcre.a libtool: link: ( cd ".libs" && rm -f "libepcre.la" && ln -s "../libepcre.la" "libepcre.la" ) gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/pcre' Making all in expat gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/expat' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xmlparse.lo -MD -MP -MF .deps/xmlparse.Tpo -c -o xmlparse.lo xmlparse.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xmltok.lo -MD -MP -MF .deps/xmltok.Tpo -c -o xmltok.lo xmltok.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xmlrole.lo -MD -MP -MF .deps/xmlrole.Tpo -c -o xmlrole.lo xmlrole.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xmltok_impl.lo -MD -MP -MF .deps/xmltok_impl.Tpo -c -o xmltok_impl.lo xmltok_impl.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xmltok_ns.lo -MD -MP -MF .deps/xmltok_ns.Tpo -c -o xmltok_ns.lo xmltok_ns.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xmltok_ns.lo -MD -MP -MF .deps/xmltok_ns.Tpo -c xmltok_ns.c -fPIC -DPIC -o .libs/xmltok_ns.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xmlrole.lo -MD -MP -MF .deps/xmlrole.Tpo -c xmlrole.c -fPIC -DPIC -o .libs/xmlrole.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xmlparse.lo -MD -MP -MF .deps/xmlparse.Tpo -c xmlparse.c -fPIC -DPIC -o .libs/xmlparse.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xmltok.lo -MD -MP -MF .deps/xmltok.Tpo -c xmltok.c -fPIC -DPIC -o .libs/xmltok.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xmltok_impl.lo -MD -MP -MF .deps/xmltok_impl.Tpo -c xmltok_impl.c -fPIC -DPIC -o .libs/xmltok_impl.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xmltok_ns.lo -MD -MP -MF .deps/xmltok_ns.Tpo -c xmltok_ns.c -o xmltok_ns.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xmlrole.lo -MD -MP -MF .deps/xmlrole.Tpo -c xmlrole.c -o xmlrole.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xmlparse.lo -MD -MP -MF .deps/xmlparse.Tpo -c xmlparse.c -o xmlparse.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xmltok.lo -MD -MP -MF .deps/xmltok.Tpo -c xmltok.c -o xmltok.o >/dev/null 2>&1 mv -f .deps/xmltok_ns.Tpo .deps/xmltok_ns.Plo mv -f .deps/xmlrole.Tpo .deps/xmlrole.Plo mv -f .deps/xmlparse.Tpo .deps/xmlparse.Plo mv -f .deps/xmltok.Tpo .deps/xmltok.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xmltok_impl.lo -MD -MP -MF .deps/xmltok_impl.Tpo -c xmltok_impl.c -o xmltok_impl.o >/dev/null 2>&1 mv -f .deps/xmltok_impl.Tpo .deps/xmltok_impl.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -version-info 2:0:1 -L/usr/local/lib -L/usr/local/lib -o libeexpat.la -rpath /usr/local/emboss/lib xmlparse.lo xmltok.lo xmlrole.lo xmltok_impl.lo xmltok_ns.lo -lm -lgd -lpng -lz -lm libtool: link: cc -shared -fPIC -DPIC .libs/xmlparse.o .libs/xmltok.o .libs/xmlrole.o .libs/xmltok_impl.o .libs/xmltok_ns.o -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib /usr/local/lib/libgd.so -lpng -lz -lm -O2 -fstack-protector-strong -O2 -Wl,-soname -Wl,libeexpat.so.1 -o .libs/libeexpat.so.1.1.0 libtool: link: (cd ".libs" && rm -f "libeexpat.so.1" && ln -s "libeexpat.so.1.1.0" "libeexpat.so.1") libtool: link: (cd ".libs" && rm -f "libeexpat.so" && ln -s "libeexpat.so.1.1.0" "libeexpat.so") libtool: link: ar cru .libs/libeexpat.a xmlparse.o xmltok.o xmlrole.o xmltok_impl.o xmltok_ns.o libtool: link: ranlib .libs/libeexpat.a libtool: link: ( cd ".libs" && rm -f "libeexpat.la" && ln -s "../libeexpat.la" "libeexpat.la" ) gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/expat' Making all in zlib gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/zlib' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT adler32.lo -MD -MP -MF .deps/adler32.Tpo -c -o adler32.lo adler32.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT compress.lo -MD -MP -MF .deps/compress.Tpo -c -o compress.lo compress.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT crc32.lo -MD -MP -MF .deps/crc32.Tpo -c -o crc32.lo crc32.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT deflate.lo -MD -MP -MF .deps/deflate.Tpo -c -o deflate.lo deflate.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT gzclose.lo -MD -MP -MF .deps/gzclose.Tpo -c -o gzclose.lo gzclose.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT gzlib.lo -MD -MP -MF .deps/gzlib.Tpo -c -o gzlib.lo gzlib.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT gzread.lo -MD -MP -MF .deps/gzread.Tpo -c -o gzread.lo gzread.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT gzwrite.lo -MD -MP -MF .deps/gzwrite.Tpo -c -o gzwrite.lo gzwrite.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT infback.lo -MD -MP -MF .deps/infback.Tpo -c -o infback.lo infback.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT inffast.lo -MD -MP -MF .deps/inffast.Tpo -c -o inffast.lo inffast.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT inflate.lo -MD -MP -MF .deps/inflate.Tpo -c -o inflate.lo inflate.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT inftrees.lo -MD -MP -MF .deps/inftrees.Tpo -c -o inftrees.lo inftrees.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT trees.lo -MD -MP -MF .deps/trees.Tpo -c -o trees.lo trees.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT uncompr.lo -MD -MP -MF .deps/uncompr.Tpo -c -o uncompr.lo uncompr.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT zutil.lo -MD -MP -MF .deps/zutil.Tpo -c -o zutil.lo zutil.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT gzclose.lo -MD -MP -MF .deps/gzclose.Tpo -c gzclose.c -fPIC -DPIC -o .libs/gzclose.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT adler32.lo -MD -MP -MF .deps/adler32.Tpo -c adler32.c -fPIC -DPIC -o .libs/adler32.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT deflate.lo -MD -MP -MF .deps/deflate.Tpo -c deflate.c -fPIC -DPIC -o .libs/deflate.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT compress.lo -MD -MP -MF .deps/compress.Tpo -c compress.c -fPIC -DPIC -o .libs/compress.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT crc32.lo -MD -MP -MF .deps/crc32.Tpo -c crc32.c -fPIC -DPIC -o .libs/crc32.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT infback.lo -MD -MP -MF .deps/infback.Tpo -c infback.c -fPIC -DPIC -o .libs/infback.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT gzlib.lo -MD -MP -MF .deps/gzlib.Tpo -c gzlib.c -fPIC -DPIC -o .libs/gzlib.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT gzwrite.lo -MD -MP -MF .deps/gzwrite.Tpo -c gzwrite.c -fPIC -DPIC -o .libs/gzwrite.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT gzread.lo -MD -MP -MF .deps/gzread.Tpo -c gzread.c -fPIC -DPIC -o .libs/gzread.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT inflate.lo -MD -MP -MF .deps/inflate.Tpo -c inflate.c -fPIC -DPIC -o .libs/inflate.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT inftrees.lo -MD -MP -MF .deps/inftrees.Tpo -c inftrees.c -fPIC -DPIC -o .libs/inftrees.o gzclose.c:11:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 11 | int ZEXPORT gzclose(file) | ^ ./zlibemboss.h:56:33: note: expanded from macro 'gzclose' 56 | # define gzclose egzclose | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT uncompr.lo -MD -MP -MF .deps/uncompr.Tpo -c uncompr.c -fPIC -DPIC -o .libs/uncompr.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT inffast.lo -MD -MP -MF .deps/inffast.Tpo -c inffast.c -fPIC -DPIC -o .libs/inffast.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT zutil.lo -MD -MP -MF .deps/zutil.Tpo -c zutil.c -fPIC -DPIC -o .libs/zutil.o deflate.c:198:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 198 | int ZEXPORT deflateInit_(strm, level, version, stream_size) | ^ ./zlibemboss.h:42:33: note: expanded from macro 'deflateInit_' 42 | # define deflateInit_ edeflateInit_ | ^ deflate.c:210:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 210 | int ZEXPORT deflateInit2_(strm, level, method, windowBits, memLevel, strategy, | ^ ./zlibemboss.h:41:33: note: expanded from macro 'deflateInit2_' 41 | # define deflateInit2_ edeflateInit2_ | ^ deflate.c:311:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 311 | int ZEXPORT deflateSetDictionary (strm, dictionary, dictLength) | ^ ./zlibemboss.h:46:33: note: expanded from macro 'deflateSetDictionary' 46 | # define deflateSetDictionary edeflateSetDictionary | ^ deflate.c:353:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 353 | int ZEXPORT deflateReset (strm) | ^ ./zlibemboss.h:45:33: note: expanded from macro 'deflateReset' 45 | # define deflateReset edeflateReset | ^ deflate.c:389:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 389 | int ZEXPORT deflateSetHeader (strm, head) | ^ ./zlibemboss.h:47:33: note: expanded from macro 'deflateSetHeader' 47 | # define deflateSetHeader edeflateSetHeader | ^ deflate.c:400:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 400 | int ZEXPORT deflatePrime (strm, bits, value) | ^ ./zlibemboss.h:44:33: note: expanded from macro 'deflatePrime' 44 | # define deflatePrime edeflatePrime | ^ deflate.c:412:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 412 | int ZEXPORT deflateParams(strm, level, strategy) | ^ ./zlibemboss.h:43:33: note: expanded from macro 'deflateParams' 43 | # define deflateParams edeflateParams | ^ deflate.c:451:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 451 | int ZEXPORT deflateTune(strm, good_length, max_lazy, nice_length, max_chain) | ^ ./zlibemboss.h:48:33: note: expanded from macro 'deflateTune' 48 | # define deflateTune edeflateTune | ^ deflate.c:486:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 486 | uLong ZEXPORT deflateBound(strm, sourceLen) | ^ ./zlibemboss.h:38:33: note: expanded from macro 'deflateBound' 38 | # define deflateBound edeflateBound | ^ deflate.c:548:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 548 | local void putShortMSB (s, b) | ^ deflate.c:562:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 562 | local void flush_pending(strm) | ^ deflate.c:582:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 582 | int ZEXPORT deflate (strm, flush) | ^ ./zlibemboss.h:37:33: note: expanded from macro 'deflate' 37 | # define deflate edeflate | ^ deflate.c:895:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 895 | int ZEXPORT deflateEnd (strm) | ^ ./zlibemboss.h:40:33: note: expanded from macro 'deflateEnd' 40 | # define deflateEnd edeflateEnd | ^ deflate.c:930:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 930 | int ZEXPORT deflateCopy (dest, source) | ^ ./zlibemboss.h:39:33: note: expanded from macro 'deflateCopy' 39 | # define deflateCopy edeflateCopy | ^ deflate.c:992:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 992 | local int read_buf(strm, buf, size) | ^ deflate.c:1022:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1022 | local void lm_init (s) | ^ deflate.c:1063:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1063 | local uInt longest_match(s, cur_match) | ^ deflate.c:1305:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1305 | local void fill_window(s) | ^ deflate.c:1462:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1462 | local block_state deflate_stored(s, flush) | ^ deflate.c:1520:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1520 | local block_state deflate_fast(s, flush) | ^ deflate.c:1616:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1616 | local block_state deflate_slow(s, flush) | ^ deflate.c:1741:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1741 | local block_state deflate_rle(s, flush) | ^ deflate.c:1807:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1807 | local block_state deflate_huff(s, flush) | ^ 23 warnings generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT trees.lo -MD -MP -MF .deps/trees.Tpo -c trees.c -fPIC -DPIC -o .libs/trees.o crc32.c:221:23: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 221 | unsigned long ZEXPORT crc32(crc, buf, len) | ^ ./zlibemboss.h:34:33: note: expanded from macro 'crc32' 34 | # define crc32 ecrc32 | ^ crc32.c:264:21: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 264 | local unsigned long crc32_little(crc, buf, len) | ^ crc32.c:304:21: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 304 | local unsigned long crc32_big(crc, buf, len) | ^ crc32.c:344:21: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 344 | local unsigned long gf2_matrix_times(mat, vec) | ^ crc32.c:361:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 361 | local void gf2_matrix_square(square, mat) | ^ crc32.c:372:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 372 | local uLong crc32_combine_(crc1, crc2, len2) | ^ crc32.c:428:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 428 | uLong ZEXPORT crc32_combine(crc1, crc2, len2) | ^ crc32.c:436:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 436 | uLong ZEXPORT crc32_combine64(crc1, crc2, len2) | ^ ./zlibemboss.h:36:33: note: expanded from macro 'crc32_combine64' 36 | # define crc32_combine64 ecrc32_combine64 | ^ 8 warnings generated. compress.c:22:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 22 | int ZEXPORT compress2 (dest, destLen, source, sourceLen, level) | ^ ./zlibemboss.h:32:33: note: expanded from macro 'compress2' 32 | # define compress2 ecompress2 | ^ compress.c:62:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 62 | int ZEXPORT compress (dest, destLen, source, sourceLen) | ^ ./zlibemboss.h:31:33: note: expanded from macro 'compress' 31 | # define compress ecompress | ^ compress.c:75:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 75 | uLong ZEXPORT compressBound (sourceLen) | ^ ./zlibemboss.h:33:33: note: expanded from macro 'compressBound' 33 | # define compressBound ecompressBound | ^ 3 warnings generated. infback.c:28:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 28 | int ZEXPORT inflateBackInit_(strm, windowBits, window, version, stream_size) | ^ ./zlibemboss.h:85:33: note: expanded from macro 'inflateBackInit_' 85 | # define inflateBackInit_ einflateBackInit_ | ^ infback.c:73:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 73 | local void fixedtables(state) | ^ infback.c:241:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 241 | int ZEXPORT inflateBack(strm, in, in_desc, out, out_desc) | ^ ./zlibemboss.h:83:33: note: expanded from macro 'inflateBack' 83 | # define inflateBack einflateBack | ^ infback.c:623:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 623 | int ZEXPORT inflateBackEnd(strm) | ^ ./zlibemboss.h:84:33: note: expanded from macro 'inflateBackEnd' 84 | # define inflateBackEnd einflateBackEnd | ^ 4 warnings generated. gzwrite.c:15:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 15 | local int gz_init(state) | ^ gzwrite.c:59:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 59 | local int gz_comp(state, flush) | ^ gzwrite.c:111:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 111 | local int gz_zero(state, len) | ^ gzwrite.c:143:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 143 | int ZEXPORT gzwrite(file, buf, len) | ^ ./zlibemboss.h:81:33: note: expanded from macro 'gzwrite' 81 | # define gzwrite egzwrite | ^ gzwrite.c:221:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 221 | int ZEXPORT gzputc(file, c) | ^ ./zlibemboss.h:71:33: note: expanded from macro 'gzputc' 71 | # define gzputc egzputc | ^ gzwrite.c:264:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 264 | int ZEXPORT gzputs(file, str) | ^ ./zlibemboss.h:72:33: note: expanded from macro 'gzputs' 72 | # define gzputs egzputs | ^ gzwrite.c:426:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 426 | int ZEXPORT gzflush(file, flush) | ^ ./zlibemboss.h:63:33: note: expanded from macro 'gzflush' 63 | # define gzflush egzflush | ^ gzwrite.c:458:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 458 | int ZEXPORT gzsetparams(file, level, strategy) | ^ ./zlibemboss.h:77:33: note: expanded from macro 'gzsetparams' 77 | # define gzsetparams egzsetparams | ^ gzwrite.c:500:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 500 | int ZEXPORT gzclose_w(file) | ^ ./zlibemboss.h:58:33: note: expanded from macro 'gzclose_w' 58 | # define gzclose_w egzclose_w | ^ 9 warnings generated. uncompr.c:24:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 24 | int ZEXPORT uncompress (dest, destLen, source, sourceLen) | ^ ./zlibemboss.h:102:33: note: expanded from macro 'uncompress' 102 | # define uncompress euncompress | ^ 1 warning generated. inflate.c:103:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 103 | int ZEXPORT inflateReset(strm) | ^ ./zlibemboss.h:93:33: note: expanded from macro 'inflateReset' 93 | # define inflateReset einflateReset | ^ inflate.c:130:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 130 | int ZEXPORT inflateReset2(strm, windowBits) | ^ ./zlibemboss.h:94:33: note: expanded from macro 'inflateReset2' 94 | # define inflateReset2 einflateReset2 | ^ inflate.c:168:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 168 | int ZEXPORT inflateInit2_(strm, windowBits, version, stream_size) | ^ ./zlibemboss.h:89:33: note: expanded from macro 'inflateInit2_' 89 | # define inflateInit2_ einflateInit2_ | ^ inflate.c:201:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 201 | int ZEXPORT inflateInit_(strm, version, stream_size) | ^ ./zlibemboss.h:90:33: note: expanded from macro 'inflateInit_' 90 | # define inflateInit_ einflateInit_ | ^ inflate.c:209:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 209 | int ZEXPORT inflatePrime(strm, bits, value) | ^ ./zlibemboss.h:92:33: note: expanded from macro 'inflatePrime' 92 | # define inflatePrime einflatePrime | ^ inflate.c:240:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 240 | local void fixedtables(state) | ^ inflate.c:358:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 358 | local int updatewindow(strm, out) | ^ inflate.c:589:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 589 | int ZEXPORT inflate(strm, flush) | ^ ./zlibemboss.h:82:33: note: expanded from macro 'inflate' 82 | # define inflate einflate | ^ inflate.c:1238:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1238 | int ZEXPORT inflateEnd(strm) | ^ ./zlibemboss.h:87:33: note: expanded from macro 'inflateEnd' 87 | # define inflateEnd einflateEnd | ^ inflate.c:1252:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1252 | int ZEXPORT inflateSetDictionary(strm, dictionary, dictLength) | ^ ./zlibemboss.h:95:33: note: expanded from macro 'inflateSetDictionary' 95 | # define inflateSetDictionary einflateSetDictionary | ^ inflate.c:1294:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1294 | int ZEXPORT inflateGetHeader(strm, head) | ^ ./zlibemboss.h:88:33: note: expanded from macro 'inflateGetHeader' 88 | # define inflateGetHeader einflateGetHeader | ^ inflate.c:1322:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1322 | local unsigned syncsearch(have, buf, len) | ^ inflate.c:1345:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1345 | int ZEXPORT inflateSync(strm) | ^ ./zlibemboss.h:96:33: note: expanded from macro 'inflateSync' 96 | # define inflateSync einflateSync | ^ inflate.c:1396:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1396 | int ZEXPORT inflateSyncPoint(strm) | ^ ./zlibemboss.h:97:33: note: expanded from macro 'inflateSyncPoint' 97 | # define inflateSyncPoint einflateSyncPoint | ^ inflate.c:1406:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1406 | int ZEXPORT inflateCopy(dest, source) | ^ ./zlibemboss.h:86:33: note: expanded from macro 'inflateCopy' 86 | # define inflateCopy einflateCopy | ^ inflate.c:1453:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1453 | int ZEXPORT inflateUndermine(strm, subvert) | ^ ./zlibemboss.h:98:33: note: expanded from macro 'inflateUndermine' 98 | # define inflateUndermine einflateUndermine | ^ inflate.c:1470:14: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1470 | long ZEXPORT inflateMark(strm) | ^ ./zlibemboss.h:91:33: note: expanded from macro 'inflateMark' 91 | # define inflateMark einflateMark | ^ inflate.c:1475:61: warning: shifting a negative signed value is undefined [-Wshift-negative-value] 1475 | if (strm == Z_NULL || strm->state == Z_NULL) return -1L << 16; | ~~~ ^ 18 warnings generated. inffast.c:67:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 67 | void ZLIB_INTERNAL inflate_fast(strm, start) | ^ ./zlibemboss.h:100:33: note: expanded from macro 'inflate_fast' 100 | # define inflate_fast einflate_fast | ^ 1 warning generated. zutil.c:133:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 133 | const char * ZEXPORT zError(err) | ^ ./zlibemboss.h:103:33: note: expanded from macro 'zError' 103 | # define zError ezError | ^ zutil.c:300:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 300 | voidpf ZLIB_INTERNAL zcalloc (opaque, items, size) | ^ ./zlibemboss.h:104:33: note: expanded from macro 'zcalloc' 104 | # define zcalloc ezcalloc | ^ zutil.c:310:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 310 | void ZLIB_INTERNAL zcfree (opaque, ptr) | ^ ./zlibemboss.h:105:33: note: expanded from macro 'zcfree' 105 | # define zcfree ezcfree | ^ 3 warnings generated. inftrees.c:32:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 32 | int ZLIB_INTERNAL inflate_table(type, lens, codes, table, bits, work) | ^ ./zlibemboss.h:101:33: note: expanded from macro 'inflate_table' 101 | # define inflate_table einflate_table | ^ 1 warning generated. trees.c:386:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 386 | void ZLIB_INTERNAL _tr_init(s) | ^ ./zlibemboss.h:25:33: note: expanded from macro '_tr_init' 25 | # define _tr_init _etr_init | ^ trees.c:415:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 415 | local void init_block(s) | ^ trees.c:459:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 459 | local void pqdownheap(s, tree, k) | ^ trees.c:494:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 494 | local void gen_bitlen(s, desc) | ^ trees.c:581:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 581 | local void gen_codes (tree, max_code, bl_count) | ^ trees.c:623:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 623 | local void build_tree(s, desc) | ^ trees.c:711:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 711 | local void scan_tree (s, tree, max_code) | ^ trees.c:756:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 756 | local void send_tree (s, tree, max_code) | ^ trees.c:807:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 807 | local int build_bl_tree(s) | ^ trees.c:842:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 842 | local void send_all_trees(s, lcodes, dcodes, blcodes) | ^ trees.c:871:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 871 | void ZLIB_INTERNAL _tr_stored_block(s, buf, stored_len, last) | ^ ./zlibemboss.h:26:33: note: expanded from macro '_tr_stored_block' 26 | # define _tr_stored_block _etr_stored_block | ^ trees.c:896:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 896 | void ZLIB_INTERNAL _tr_align(s) | ^ ./zlibemboss.h:23:33: note: expanded from macro '_tr_align' 23 | # define _tr_align _etr_align | ^ trees.c:925:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 925 | void ZLIB_INTERNAL _tr_flush_block(s, buf, stored_len, last) | ^ ./zlibemboss.h:24:33: note: expanded from macro '_tr_flush_block' 24 | # define _tr_flush_block _etr_flush_block | ^ trees.c:1026:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1026 | int ZLIB_INTERNAL _tr_tally (s, dist, lc) | ^ ./zlibemboss.h:27:33: note: expanded from macro '_tr_tally' 27 | # define _tr_tally _etr_tally | ^ trees.c:1076:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1076 | local void compress_block(s, ltree, dtree) | ^ trees.c:1137:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1137 | local int detect_data_type(s) | ^ trees.c:1171:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1171 | local unsigned bi_reverse(code, len) | ^ trees.c:1186:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1186 | local void bi_flush(s) | ^ trees.c:1203:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1203 | local void bi_windup(s) | ^ trees.c:1222:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 1222 | local void copy_block(s, buf, len, header) | ^ 20 warnings generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT deflate.lo -MD -MP -MF .deps/deflate.Tpo -c deflate.c -o deflate.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT crc32.lo -MD -MP -MF .deps/crc32.Tpo -c crc32.c -o crc32.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT gzclose.lo -MD -MP -MF .deps/gzclose.Tpo -c gzclose.c -o gzclose.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT compress.lo -MD -MP -MF .deps/compress.Tpo -c compress.c -o compress.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT infback.lo -MD -MP -MF .deps/infback.Tpo -c infback.c -o infback.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT gzwrite.lo -MD -MP -MF .deps/gzwrite.Tpo -c gzwrite.c -o gzwrite.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT uncompr.lo -MD -MP -MF .deps/uncompr.Tpo -c uncompr.c -o uncompr.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT inflate.lo -MD -MP -MF .deps/inflate.Tpo -c inflate.c -o inflate.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT inftrees.lo -MD -MP -MF .deps/inftrees.Tpo -c inftrees.c -o inftrees.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT inffast.lo -MD -MP -MF .deps/inffast.Tpo -c inffast.c -o inffast.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT zutil.lo -MD -MP -MF .deps/zutil.Tpo -c zutil.c -o zutil.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT trees.lo -MD -MP -MF .deps/trees.Tpo -c trees.c -o trees.o >/dev/null 2>&1 adler32.c:60:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 60 | uLong ZEXPORT adler32(adler, buf, len) | ^ ./zlibemboss.h:28:33: note: expanded from macro 'adler32' 28 | # define adler32 eadler32 | ^ adler32.c:131:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 131 | local uLong adler32_combine_(adler1, adler2, len2) | ^ adler32.c:155:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 155 | uLong ZEXPORT adler32_combine(adler1, adler2, len2) | ^ adler32.c:163:15: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 163 | uLong ZEXPORT adler32_combine64(adler1, adler2, len2) | ^ ./zlibemboss.h:30:33: note: expanded from macro 'adler32_combine64' 30 | # define adler32_combine64 eadler32_combine64 | ^ 4 warnings generated. mv -f .deps/deflate.Tpo .deps/deflate.Plo mv -f .deps/crc32.Tpo .deps/crc32.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT adler32.lo -MD -MP -MF .deps/adler32.Tpo -c adler32.c -o adler32.o >/dev/null 2>&1 mv -f .deps/gzclose.Tpo .deps/gzclose.Plo mv -f .deps/compress.Tpo .deps/compress.Plo mv -f .deps/uncompr.Tpo .deps/uncompr.Plo mv -f .deps/infback.Tpo .deps/infback.Plo gzlib.c:71:12: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 71 | local void gz_reset(state) | ^ gzlib.c:87:14: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 87 | local gzFile gz_open(path, fd, mode) | ^ gzlib.c:196:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 196 | gzFile ZEXPORT gzopen(path, mode) | ^ gzlib.c:204:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 204 | gzFile ZEXPORT gzopen64(path, mode) | ^ ./zlibemboss.h:69:33: note: expanded from macro 'gzopen64' 69 | # define gzopen64 egzopen64 | ^ gzlib.c:212:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 212 | gzFile ZEXPORT gzdopen(fd, mode) | ^ ./zlibemboss.h:60:33: note: expanded from macro 'gzdopen' 60 | # define gzdopen egzdopen | ^ gzlib.c:228:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 228 | int ZEXPORT gzbuffer(file, size) | ^ ./zlibemboss.h:54:33: note: expanded from macro 'gzbuffer' 54 | # define gzbuffer egzbuffer | ^ gzlib.c:253:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 253 | int ZEXPORT gzrewind(file) | ^ ./zlibemboss.h:74:33: note: expanded from macro 'gzrewind' 74 | # define gzrewind egzrewind | ^ gzlib.c:275:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 275 | z_off64_t ZEXPORT gzseek64(file, offset, whence) | ^ ./zlibemboss.h:76:33: note: expanded from macro 'gzseek64' 76 | # define gzseek64 egzseek64 | ^ gzlib.c:351:17: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 351 | z_off_t ZEXPORT gzseek(file, offset, whence) | ^ gzlib.c:363:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 363 | z_off64_t ZEXPORT gztell64(file) | ^ ./zlibemboss.h:79:33: note: expanded from macro 'gztell64' 79 | # define gztell64 egztell64 | ^ gzlib.c:380:17: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 380 | z_off_t ZEXPORT gztell(file) | ^ gzlib.c:390:19: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 390 | z_off64_t ZEXPORT gzoffset64(file) | ^ ./zlibemboss.h:67:33: note: expanded from macro 'gzoffset64' 67 | # define gzoffset64 egzoffset64 | ^ gzlib.c:413:17: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 413 | z_off_t ZEXPORT gzoffset(file) | ^ gzlib.c:423:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 423 | int ZEXPORT gzeof(file) | ^ ./zlibemboss.h:61:33: note: expanded from macro 'gzeof' 61 | # define gzeof egzeof | ^ gzlib.c:441:22: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 441 | const char * ZEXPORT gzerror(file, errnum) | ^ ./zlibemboss.h:62:33: note: expanded from macro 'gzerror' 62 | # define gzerror egzerror | ^ gzlib.c:461:14: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 461 | void ZEXPORT gzclearerr(file) | ^ ./zlibemboss.h:55:33: note: expanded from macro 'gzclearerr' 55 | # define gzclearerr egzclearerr | ^ gzlib.c:485:20: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 485 | void ZLIB_INTERNAL gz_error(state, err, msg) | ^ ./zlibemboss.h:51:33: note: expanded from macro 'gz_error' 51 | # define gz_error egz_error | ^ 17 warnings generated. mv -f .deps/gzwrite.Tpo .deps/gzwrite.Plo mv -f .deps/zutil.Tpo .deps/zutil.Plo mv -f .deps/inflate.Tpo .deps/inflate.Plo mv -f .deps/inffast.Tpo .deps/inffast.Plo mv -f .deps/trees.Tpo .deps/trees.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT gzlib.lo -MD -MP -MF .deps/gzlib.Tpo -c gzlib.c -o gzlib.o >/dev/null 2>&1 gzread.c:21:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 21 | local int gz_load(state, buf, len, have) | ^ gzread.c:50:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 50 | local int gz_avail(state) | ^ gzread.c:73:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 73 | local int gz_next4(state, ret) | ^ gzread.c:104:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 104 | local int gz_head(state) | ^ gzread.c:233:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 233 | local int gz_decomp(state) | ^ gzread.c:304:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 304 | local int gz_make(state) | ^ gzread.c:330:11: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 330 | local int gz_skip(state, len) | ^ gzread.c:362:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 362 | int ZEXPORT gzread(file, buf, len) | ^ ./zlibemboss.h:73:33: note: expanded from macro 'gzread' 73 | # define gzread egzread | ^ gzread.c:453:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 453 | int ZEXPORT gzgetc(file) | ^ ./zlibemboss.h:64:33: note: expanded from macro 'gzgetc' 64 | # define gzgetc egzgetc | ^ gzread.c:482:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 482 | int ZEXPORT gzungetc(c, file) | ^ ./zlibemboss.h:80:33: note: expanded from macro 'gzungetc' 80 | # define gzungetc egzungetc | ^ gzread.c:539:16: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 539 | char * ZEXPORT gzgets(file, buf, len) | ^ ./zlibemboss.h:65:33: note: expanded from macro 'gzgets' 65 | # define gzgets egzgets | ^ gzread.c:603:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 603 | int ZEXPORT gzdirect(file) | ^ ./zlibemboss.h:59:33: note: expanded from macro 'gzdirect' 59 | # define gzdirect egzdirect | ^ gzread.c:627:13: warning: a function definition without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 627 | int ZEXPORT gzclose_r(file) | ^ ./zlibemboss.h:57:33: note: expanded from macro 'gzclose_r' 57 | # define gzclose_r egzclose_r | ^ 13 warnings generated. mv -f .deps/gzlib.Tpo .deps/gzlib.Plo mv -f .deps/adler32.Tpo .deps/adler32.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT gzread.lo -MD -MP -MF .deps/gzread.Tpo -c gzread.c -o gzread.o >/dev/null 2>&1 mv -f .deps/gzread.Tpo .deps/gzread.Plo mv -f .deps/inftrees.Tpo .deps/inftrees.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -version-info 2:0:1 -L/usr/local/lib -L/usr/local/lib -o libezlib.la -rpath /usr/local/emboss/lib adler32.lo compress.lo crc32.lo deflate.lo gzclose.lo gzlib.lo gzread.lo gzwrite.lo infback.lo inffast.lo inflate.lo inftrees.lo trees.lo uncompr.lo zutil.lo -lm -lgd -lpng -lz -lm libtool: link: cc -shared -fPIC -DPIC .libs/adler32.o .libs/compress.o .libs/crc32.o .libs/deflate.o .libs/gzclose.o .libs/gzlib.o .libs/gzread.o .libs/gzwrite.o .libs/infback.o .libs/inffast.o .libs/inflate.o .libs/inftrees.o .libs/trees.o .libs/uncompr.o .libs/zutil.o -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib /usr/local/lib/libgd.so -lpng -lz -lm -O2 -fstack-protector-strong -O2 -Wl,-soname -Wl,libezlib.so.1 -o .libs/libezlib.so.1.1.0 libtool: link: (cd ".libs" && rm -f "libezlib.so.1" && ln -s "libezlib.so.1.1.0" "libezlib.so.1") libtool: link: (cd ".libs" && rm -f "libezlib.so" && ln -s "libezlib.so.1.1.0" "libezlib.so") libtool: link: ar cru .libs/libezlib.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o libtool: link: ranlib .libs/libezlib.a libtool: link: ( cd ".libs" && rm -f "libezlib.la" && ln -s "../libezlib.la" "libezlib.la" ) gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/zlib' Making all in core gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' /usr/local/bin/gmake all-am gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajalign.lo -MD -MP -MF .deps/libajax_la-ajalign.Tpo -c -o libajax_la-ajalign.lo `test -f 'ajalign.c' || echo './'`ajalign.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajarr.lo -MD -MP -MF .deps/libajax_la-ajarr.Tpo -c -o libajax_la-ajarr.lo `test -f 'ajarr.c' || echo './'`ajarr.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassem.lo -MD -MP -MF .deps/libajax_la-ajassem.Tpo -c -o libajax_la-ajassem.lo `test -f 'ajassem.c' || echo './'`ajassem.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemread.lo -MD -MP -MF .deps/libajax_la-ajassemread.Tpo -c -o libajax_la-ajassemread.lo `test -f 'ajassemread.c' || echo './'`ajassemread.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemwrite.lo -MD -MP -MF .deps/libajax_la-ajassemwrite.Tpo -c -o libajax_la-ajassemwrite.lo `test -f 'ajassemwrite.c' || echo './'`ajassemwrite.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassert.lo -MD -MP -MF .deps/libajax_la-ajassert.Tpo -c -o libajax_la-ajassert.lo `test -f 'ajassert.c' || echo './'`ajassert.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajbamindex.lo -MD -MP -MF .deps/libajax_la-ajbamindex.Tpo -c -o libajax_la-ajbamindex.lo `test -f 'ajbamindex.c' || echo './'`ajbamindex.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include 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-DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajseqabi.lo -MD -MP -MF .deps/libajax_la-ajseqabi.Tpo -c -o libajax_la-ajseqabi.lo `test -f 'ajseqabi.c' || echo './'`ajseqabi.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajseqbam.lo -MD -MP -MF .deps/libajax_la-ajseqbam.Tpo -c -o libajax_la-ajseqbam.lo `test -f 'ajseqbam.c' || echo './'`ajseqbam.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajseqread.lo -MD -MP -MF .deps/libajax_la-ajseqread.Tpo -c -o libajax_la-ajseqread.lo `test -f 'ajseqread.c' || echo './'`ajseqread.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajseqtype.lo -MD -MP -MF .deps/libajax_la-ajseqtype.Tpo -c -o libajax_la-ajseqtype.lo `test -f 'ajseqtype.c' || echo './'`ajseqtype.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajseqwrite.lo -MD -MP -MF .deps/libajax_la-ajseqwrite.Tpo -c -o libajax_la-ajseqwrite.lo `test -f 'ajseqwrite.c' || echo './'`ajseqwrite.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajsort.lo -MD -MP -MF .deps/libajax_la-ajsort.Tpo -c -o libajax_la-ajsort.lo `test -f 'ajsort.c' || echo './'`ajsort.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajsql.lo -MD -MP -MF .deps/libajax_la-ajsql.Tpo -c -o libajax_la-ajsql.lo `test -f 'ajsql.c' || echo './'`ajsql.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajstr.lo -MD -MP -MF .deps/libajax_la-ajstr.Tpo -c -o libajax_la-ajstr.lo `test -f 'ajstr.c' || echo './'`ajstr.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajsys.lo -MD -MP -MF .deps/libajax_la-ajsys.Tpo -c -o libajax_la-ajsys.lo `test -f 'ajsys.c' || echo './'`ajsys.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtable.lo -MD -MP -MF .deps/libajax_la-ajtable.Tpo -c -o libajax_la-ajtable.lo `test -f 'ajtable.c' || echo './'`ajtable.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtagval.lo -MD -MP -MF .deps/libajax_la-ajtagval.Tpo -c -o libajax_la-ajtagval.lo `test -f 'ajtagval.c' || echo './'`ajtagval.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtax.lo -MD -MP -MF .deps/libajax_la-ajtax.Tpo -c -o libajax_la-ajtax.lo `test -f 'ajtax.c' || echo './'`ajtax.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajarr.lo -MD -MP -MF .deps/libajax_la-ajarr.Tpo -c ajarr.c -fPIC -DPIC -o .libs/libajax_la-ajarr.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassert.lo -MD -MP -MF .deps/libajax_la-ajassert.Tpo -c ajassert.c -fPIC -DPIC -o .libs/libajax_la-ajassert.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassem.lo -MD -MP -MF .deps/libajax_la-ajassem.Tpo -c ajassem.c -fPIC -DPIC -o .libs/libajax_la-ajassem.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajbase.lo -MD -MP -MF .deps/libajax_la-ajbase.Tpo -c ajbase.c -fPIC -DPIC -o .libs/libajax_la-ajbase.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemread.lo -MD -MP -MF .deps/libajax_la-ajassemread.Tpo -c ajassemread.c -fPIC -DPIC -o .libs/libajax_la-ajassemread.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemwrite.lo -MD -MP -MF .deps/libajax_la-ajassemwrite.Tpo -c ajassemwrite.c -fPIC -DPIC -o .libs/libajax_la-ajassemwrite.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajalign.lo -MD -MP -MF .deps/libajax_la-ajalign.Tpo -c ajalign.c -fPIC -DPIC -o .libs/libajax_la-ajalign.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdomain.lo -MD -MP -MF .deps/libajax_la-ajdomain.Tpo -c ajdomain.c -fPIC -DPIC -o .libs/libajax_la-ajdomain.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajbamindex.lo -MD -MP -MF .deps/libajax_la-ajbamindex.Tpo -c ajbamindex.c -fPIC -DPIC -o .libs/libajax_la-ajbamindex.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfileio.lo -MD -MP -MF .deps/libajax_la-ajfileio.Tpo -c ajfileio.c -fPIC -DPIC -o .libs/libajax_la-ajfileio.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcall.lo -MD -MP -MF .deps/libajax_la-ajcall.Tpo -c ajcall.c -fPIC -DPIC -o .libs/libajax_la-ajcall.o In file included from ajarr.c:32: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdom.lo -MD -MP -MF .deps/libajax_la-ajdom.Tpo -c ajdom.c -fPIC -DPIC -o .libs/libajax_la-ajdom.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcod.lo -MD -MP -MF .deps/libajax_la-ajcod.Tpo -c ajcod.c -fPIC -DPIC -o .libs/libajax_la-ajcod.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeatwrite.lo -MD -MP -MF .deps/libajax_la-ajfeatwrite.Tpo -c ajfeatwrite.c -fPIC -DPIC -o .libs/libajax_la-ajfeatwrite.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdmx.lo -MD -MP -MF .deps/libajax_la-ajdmx.Tpo -c ajdmx.c -fPIC -DPIC -o .libs/libajax_la-ajdmx.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcigar.lo -MD -MP -MF .deps/libajax_la-ajcigar.Tpo -c ajcigar.c -fPIC -DPIC -o .libs/libajax_la-ajcigar.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeatread.lo -MD -MP -MF .deps/libajax_la-ajfeatread.Tpo -c ajfeatread.c -fPIC -DPIC -o .libs/libajax_la-ajfeatread.o In file included from ajassert.c:30: In file included from ./ajassert.h:37: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajmath.lo -MD -MP -MF .deps/libajax_la-ajmath.Tpo -c ajmath.c -fPIC -DPIC -o .libs/libajax_la-ajmath.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfiledata.lo -MD -MP -MF .deps/libajax_la-ajfiledata.Tpo -c ajfiledata.c -fPIC -DPIC -o .libs/libajax_la-ajfiledata.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajftp.lo -MD -MP -MF .deps/libajax_la-ajftp.Tpo -c ajftp.c -fPIC -DPIC -o .libs/libajax_la-ajftp.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajindex.lo -MD -MP -MF .deps/libajax_la-ajindex.Tpo -c ajindex.c -fPIC -DPIC -o .libs/libajax_la-ajindex.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeat.lo -MD -MP -MF .deps/libajax_la-ajfeat.Tpo -c ajfeat.c -fPIC -DPIC -o .libs/libajax_la-ajfeat.o In file included from ajassemread.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajexcept.lo -MD -MP -MF .deps/libajax_la-ajexcept.Tpo -c ajexcept.c -fPIC -DPIC -o .libs/libajax_la-ajexcept.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdan.lo -MD -MP -MF .deps/libajax_la-ajdan.Tpo -c ajdan.c -fPIC -DPIC -o .libs/libajax_la-ajdan.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfmt.lo -MD -MP -MF .deps/libajax_la-ajfmt.Tpo -c ajfmt.c -fPIC -DPIC -o .libs/libajax_la-ajfmt.o In file included from ajcall.c:27: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajbamindex.c:53: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajarr.lo -MD -MP -MF .deps/libajax_la-ajarr.Tpo -c ajarr.c -o libajax_la-ajarr.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajlist.lo -MD -MP -MF .deps/libajax_la-ajlist.Tpo -c ajlist.c -fPIC -DPIC -o .libs/libajax_la-ajlist.o In file included from ajalign.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajnexus.lo -MD -MP -MF .deps/libajax_la-ajnexus.Tpo -c ajnexus.c -fPIC -DPIC -o .libs/libajax_la-ajnexus.o In file included from ajassemwrite.c:29: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajmess.lo -MD -MP -MF .deps/libajax_la-ajmess.Tpo -c ajmess.c -fPIC -DPIC -o .libs/libajax_la-ajmess.o In file included from ajdom.c:32: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajhttp.lo -MD -MP -MF .deps/libajax_la-ajhttp.Tpo -c ajhttp.c -fPIC -DPIC -o .libs/libajax_la-ajhttp.o In file included from ajmath.c:37: In file included from ./ajmath.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajcigar.c:26: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajjava.lo -MD -MP -MF .deps/libajax_la-ajjava.Tpo -c ajjava.c -fPIC -DPIC -o .libs/libajax_la-ajjava.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassert.lo -MD -MP -MF .deps/libajax_la-ajassert.Tpo -c ajassert.c -o libajax_la-ajassert.o >/dev/null 2>&1 In file included from ajfeatwrite.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajobo.lo -MD -MP -MF .deps/libajax_la-ajobo.Tpo -c ajobo.c -fPIC -DPIC -o .libs/libajax_la-ajobo.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajnam.lo -MD -MP -MF .deps/libajax_la-ajnam.Tpo -c ajnam.c -fPIC -DPIC -o .libs/libajax_la-ajnam.o In file included from ajassem.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ ajassem.c:1015:35: warning: adding 'char' to a string does not append to the string [-Wstring-plus-int] 1015 | ajErr("unrecognised cigar op: " + cigar->cigoperator[i]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ ajassem.c:1015:35: note: use array indexing to silence this warning 1015 | ajErr("unrecognised cigar op: " + cigar->cigoperator[i]); | ^ | & [ ] 2 warnings generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajoboread.lo -MD -MP -MF .deps/libajax_la-ajoboread.Tpo -c ajoboread.c -fPIC -DPIC -o .libs/libajax_la-ajoboread.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajphylo.lo -MD -MP -MF .deps/libajax_la-ajphylo.Tpo -c ajphylo.c -fPIC -DPIC -o .libs/libajax_la-ajphylo.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajbamindex.lo -MD -MP -MF .deps/libajax_la-ajbamindex.Tpo -c ajbamindex.c -o libajax_la-ajbamindex.o >/dev/null 2>&1 In file included from ajdan.c:29: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajfiledata.c:29: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajpat.lo -MD -MP -MF .deps/libajax_la-ajpat.Tpo -c ajpat.c -fPIC -DPIC -o .libs/libajax_la-ajpat.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemread.lo -MD -MP -MF .deps/libajax_la-ajassemread.Tpo -c ajassemread.c -o libajax_la-ajassemread.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcall.lo -MD -MP -MF .deps/libajax_la-ajcall.Tpo -c ajcall.c -o libajax_la-ajcall.o >/dev/null 2>&1 In file included from ajfmt.c:49: In file included from ./ajfmt.h:52: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajpdb.lo -MD -MP -MF .deps/libajax_la-ajpdb.Tpo -c ajpdb.c -fPIC -DPIC -o .libs/libajax_la-ajpdb.o In file included from ajftp.c:30: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfile.lo -MD -MP -MF .deps/libajax_la-ajfile.Tpo -c ajfile.c -fPIC -DPIC -o .libs/libajax_la-ajfile.o In file included from ajfeatread.c:32: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajfeat.c:97: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajalign.lo -MD -MP -MF .deps/libajax_la-ajalign.Tpo -c ajalign.c -o libajax_la-ajalign.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajreg.lo -MD -MP -MF .deps/libajax_la-ajreg.Tpo -c ajreg.c -fPIC -DPIC -o .libs/libajax_la-ajreg.o In file included from ajnexus.c:27: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajmatrices.lo -MD -MP -MF .deps/libajax_la-ajmatrices.Tpo -c ajmatrices.c -fPIC -DPIC -o .libs/libajax_la-ajmatrices.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassemwrite.lo -MD -MP -MF .deps/libajax_la-ajassemwrite.Tpo -c ajassemwrite.c -o libajax_la-ajassemwrite.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajseq.lo -MD -MP -MF .deps/libajax_la-ajseq.Tpo -c ajseq.c -fPIC -DPIC -o .libs/libajax_la-ajseq.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajquery.lo -MD -MP -MF .deps/libajax_la-ajquery.Tpo -c ajquery.c -fPIC -DPIC -o .libs/libajax_la-ajquery.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajpdbio.lo -MD -MP -MF .deps/libajax_la-ajpdbio.Tpo -c ajpdbio.c -fPIC -DPIC -o .libs/libajax_la-ajpdbio.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajmath.lo -MD -MP -MF .deps/libajax_la-ajmath.Tpo -c ajmath.c -o libajax_la-ajmath.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcigar.lo -MD -MP -MF .deps/libajax_la-ajcigar.Tpo -c ajcigar.c -o libajax_la-ajcigar.o >/dev/null 2>&1 In file included from ajmess.c:34: In file included from ./ajmess.h:35: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajindex.c:28: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajresourceread.lo -MD -MP -MF .deps/libajax_la-ajresourceread.Tpo -c ajresourceread.c -fPIC -DPIC -o .libs/libajax_la-ajresourceread.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajmem.lo -MD -MP -MF .deps/libajax_la-ajmem.Tpo -c ajmem.c -fPIC -DPIC -o .libs/libajax_la-ajmem.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajassem.lo -MD -MP -MF .deps/libajax_la-ajassem.Tpo -c ajassem.c -o libajax_la-ajassem.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajobowrite.lo -MD -MP -MF .deps/libajax_la-ajobowrite.Tpo -c ajobowrite.c -fPIC -DPIC -o .libs/libajax_la-ajobowrite.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeatwrite.lo -MD -MP -MF .deps/libajax_la-ajfeatwrite.Tpo -c ajfeatwrite.c -o libajax_la-ajfeatwrite.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajresource.lo -MD -MP -MF .deps/libajax_la-ajresource.Tpo -c ajresource.c -fPIC -DPIC -o .libs/libajax_la-ajresource.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajreport.lo -MD -MP -MF .deps/libajax_la-ajreport.Tpo -c ajreport.c -fPIC -DPIC -o .libs/libajax_la-ajreport.o In file included from ajoboread.c:30: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajobo.c:29: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajcod.c:29: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajhttp.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfiledata.lo -MD -MP -MF .deps/libajax_la-ajfiledata.Tpo -c ajfiledata.c -o libajax_la-ajfiledata.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajrange.lo -MD -MP -MF .deps/libajax_la-ajrange.Tpo -c ajrange.c -fPIC -DPIC -o .libs/libajax_la-ajrange.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdan.lo -MD -MP -MF .deps/libajax_la-ajdan.Tpo -c ajdan.c -o libajax_la-ajdan.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajrefseqread.lo -MD -MP -MF .deps/libajax_la-ajrefseqread.Tpo -c ajrefseqread.c -fPIC -DPIC -o .libs/libajax_la-ajrefseqread.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdom.lo -MD -MP -MF .deps/libajax_la-ajdom.Tpo -c ajdom.c -o libajax_la-ajdom.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfmt.lo -MD -MP -MF .deps/libajax_la-ajfmt.Tpo -c ajfmt.c -o libajax_la-ajfmt.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajseqabi.lo -MD -MP -MF .deps/libajax_la-ajseqabi.Tpo -c ajseqabi.c -fPIC -DPIC -o .libs/libajax_la-ajseqabi.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajftp.lo -MD -MP -MF .deps/libajax_la-ajftp.Tpo -c ajftp.c -o libajax_la-ajftp.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeat.lo -MD -MP -MF .deps/libajax_la-ajfeat.Tpo -c ajfeat.c -o libajax_la-ajfeat.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajrefseq.lo -MD -MP -MF .deps/libajax_la-ajrefseq.Tpo -c ajrefseq.c -fPIC -DPIC -o .libs/libajax_la-ajrefseq.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfeatread.lo -MD -MP -MF .deps/libajax_la-ajfeatread.Tpo -c ajfeatread.c -o libajax_la-ajfeatread.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajjava.lo -MD -MP -MF .deps/libajax_la-ajjava.Tpo -c ajjava.c -o libajax_la-ajjava.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajresourcewrite.lo -MD -MP -MF .deps/libajax_la-ajresourcewrite.Tpo -c ajresourcewrite.c -fPIC -DPIC -o .libs/libajax_la-ajresourcewrite.o In file included from ajphylo.c:28: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajseqbam.lo -MD -MP -MF .deps/libajax_la-ajseqbam.Tpo -c ajseqbam.c -fPIC -DPIC -o .libs/libajax_la-ajseqbam.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajrefseqwrite.lo -MD -MP -MF .deps/libajax_la-ajrefseqwrite.Tpo -c ajrefseqwrite.c -fPIC -DPIC -o .libs/libajax_la-ajrefseqwrite.o In file included from ajpdb.c:39: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajnexus.lo -MD -MP -MF .deps/libajax_la-ajnexus.Tpo -c ajnexus.c -o libajax_la-ajnexus.o >/dev/null 2>&1 In file included from ajbase.c:29: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajfile.c:33: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajnam.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajobowrite.c:29: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajseqread.lo -MD -MP -MF .deps/libajax_la-ajseqread.Tpo -c ajseqread.c -fPIC -DPIC -o .libs/libajax_la-ajseqread.o In file included from ajresource.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajobo.lo -MD -MP -MF .deps/libajax_la-ajobo.Tpo -c ajobo.c -o libajax_la-ajobo.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajseqwrite.lo -MD -MP -MF .deps/libajax_la-ajseqwrite.Tpo -c ajseqwrite.c -fPIC -DPIC -o .libs/libajax_la-ajseqwrite.o In file included from ajexcept.c:33: In file included from ./ajexcept.h:39: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajmess.lo -MD -MP -MF .deps/libajax_la-ajmess.Tpo -c ajmess.c -o libajax_la-ajmess.o >/dev/null 2>&1 In file included from ajdomain.c:37: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajindex.lo -MD -MP -MF .deps/libajax_la-ajindex.Tpo -c ajindex.c -o libajax_la-ajindex.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajhttp.lo -MD -MP -MF .deps/libajax_la-ajhttp.Tpo -c ajhttp.c -o libajax_la-ajhttp.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajoboread.lo -MD -MP -MF .deps/libajax_la-ajoboread.Tpo -c ajoboread.c -o libajax_la-ajoboread.o >/dev/null 2>&1 In file included from ajresourceread.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libajax_la-ajassert.Tpo .deps/libajax_la-ajassert.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajseqtype.lo -MD -MP -MF .deps/libajax_la-ajseqtype.Tpo -c ajseqtype.c -fPIC -DPIC -o .libs/libajax_la-ajseqtype.o In file included from ajrefseq.c:30: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajreport.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajrefseqread.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajstr.lo -MD -MP -MF .deps/libajax_la-ajstr.Tpo -c ajstr.c -fPIC -DPIC -o .libs/libajax_la-ajstr.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajcod.lo -MD -MP -MF .deps/libajax_la-ajcod.Tpo -c ajcod.c -o libajax_la-ajcod.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajsql.lo -MD -MP -MF .deps/libajax_la-ajsql.Tpo -c ajsql.c -fPIC -DPIC -o .libs/libajax_la-ajsql.o mv -f .deps/libajax_la-ajbamindex.Tpo .deps/libajax_la-ajbamindex.Plo In file included from ajresourcewrite.c:28: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajphylo.lo -MD -MP -MF .deps/libajax_la-ajphylo.Tpo -c ajphylo.c -o libajax_la-ajphylo.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtaxread.lo -MD -MP -MF .deps/libajax_la-ajtaxread.Tpo -c -o libajax_la-ajtaxread.lo `test -f 'ajtaxread.c' || echo './'`ajtaxread.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajsort.lo -MD -MP -MF .deps/libajax_la-ajsort.Tpo -c ajsort.c -fPIC -DPIC -o .libs/libajax_la-ajsort.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajsys.lo -MD -MP -MF .deps/libajax_la-ajsys.Tpo -c ajsys.c -fPIC -DPIC -o .libs/libajax_la-ajsys.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtable.lo -MD -MP -MF .deps/libajax_la-ajtable.Tpo -c ajtable.c -fPIC -DPIC -o .libs/libajax_la-ajtable.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajbase.lo -MD -MP -MF .deps/libajax_la-ajbase.Tpo -c ajbase.c -o libajax_la-ajbase.o >/dev/null 2>&1 In file included from ajseq.c:32: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajseqbam.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ ajseqbam.c:1373:17: warning: implicit conversion from 'const int' to 'char' changes value from 139 to -117 [-Wconstant-conversion] 1373 | buffer[1] = AJSEQBAM_GZIP_ID2; | ~ ^~~~~~~~~~~~~~~~~ ajseqbam.c:1381:17: warning: implicit conversion from 'const int' to 'char' changes value from 255 to -1 [-Wconstant-conversion] 1381 | buffer[9] = AJSEQBAM_OS_UNKNOWN; | ~ ^~~~~~~~~~~~~~~~~~~ 3 warnings generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtagval.lo -MD -MP -MF .deps/libajax_la-ajtagval.Tpo -c ajtagval.c -fPIC -DPIC -o .libs/libajax_la-ajtagval.o In file included from ajlist.c:56: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajpdb.lo -MD -MP -MF .deps/libajax_la-ajpdb.Tpo -c ajpdb.c -o libajax_la-ajpdb.o >/dev/null 2>&1 In file included from ajpdbio.c:32: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtaxwrite.lo -MD -MP -MF .deps/libajax_la-ajtaxwrite.Tpo -c -o libajax_la-ajtaxwrite.lo `test -f 'ajtaxwrite.c' || echo './'`ajtaxwrite.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtax.lo -MD -MP -MF .deps/libajax_la-ajtax.Tpo -c ajtax.c -fPIC -DPIC -o .libs/libajax_la-ajtax.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajresource.lo -MD -MP -MF .deps/libajax_la-ajresource.Tpo -c ajresource.c -o libajax_la-ajresource.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajnam.lo -MD -MP -MF .deps/libajax_la-ajnam.Tpo -c ajnam.c -o libajax_la-ajnam.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajassemwrite.Tpo .deps/libajax_la-ajassemwrite.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajobowrite.lo -MD -MP -MF .deps/libajax_la-ajobowrite.Tpo -c ajobowrite.c -o libajax_la-ajobowrite.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfile.lo -MD -MP -MF .deps/libajax_la-ajfile.Tpo -c ajfile.c -o libajax_la-ajfile.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajjava.Tpo .deps/libajax_la-ajjava.Plo mv -f .deps/libajax_la-ajcigar.Tpo .deps/libajax_la-ajcigar.Plo mv -f .deps/libajax_la-ajalign.Tpo .deps/libajax_la-ajalign.Plo In file included from ajdmx.c:35: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ ajdmx.c:1557:27: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] 1557 | if((scophit->Type == ajEDomainTypeSCOP)) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ ajdmx.c:1557:27: note: remove extraneous parentheses around the comparison to silence this warning 1557 | if((scophit->Type == ajEDomainTypeSCOP)) | ~ ^ ~ ajdmx.c:1557:27: note: use '=' to turn this equality comparison into an assignment 1557 | if((scophit->Type == ajEDomainTypeSCOP)) | ^~ | = ajdmx.c:1559:33: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] 1559 | else if ((scophit->Type == ajEDomainTypeCATH)) | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ ajdmx.c:1559:33: note: remove extraneous parentheses around the comparison to silence this warning 1559 | else if ((scophit->Type == ajEDomainTypeCATH)) | ~ ^ ~ ajdmx.c:1559:33: note: use '=' to turn this equality comparison into an assignment 1559 | else if ((scophit->Type == ajEDomainTypeCATH)) | ^~ | = 3 warnings generated. /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtext.lo -MD -MP -MF .deps/libajax_la-ajtext.Tpo -c -o libajax_la-ajtext.lo `test -f 'ajtext.c' || echo './'`ajtext.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajexcept.lo -MD -MP -MF .deps/libajax_la-ajexcept.Tpo -c ajexcept.c -o libajax_la-ajexcept.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajresourceread.lo -MD -MP -MF .deps/libajax_la-ajresourceread.Tpo -c ajresourceread.c -o libajax_la-ajresourceread.o >/dev/null 2>&1 In file included from ajsort.c:27: In file included from ./ajsort.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libajax_la-ajassem.Tpo .deps/libajax_la-ajassem.Plo In file included from ajmatrices.c:29: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajrefseq.lo -MD -MP -MF .deps/libajax_la-ajrefseq.Tpo -c ajrefseq.c -o libajax_la-ajrefseq.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajresourcewrite.lo -MD -MP -MF .deps/libajax_la-ajresourcewrite.Tpo -c ajresourcewrite.c -o libajax_la-ajresourcewrite.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdomain.lo -MD -MP -MF .deps/libajax_la-ajdomain.Tpo -c ajdomain.c -o libajax_la-ajdomain.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajreport.lo -MD -MP -MF .deps/libajax_la-ajreport.Tpo -c ajreport.c -o libajax_la-ajreport.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtextread.lo -MD -MP -MF .deps/libajax_la-ajtextread.Tpo -c -o libajax_la-ajtextread.lo `test -f 'ajtextread.c' || echo './'`ajtextread.c In file included from ajsql.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajseqtype.c:28: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libajax_la-ajcall.Tpo .deps/libajax_la-ajcall.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajseq.lo -MD -MP -MF .deps/libajax_la-ajseq.Tpo -c ajseq.c -o libajax_la-ajseq.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajrefseqread.lo -MD -MP -MF .deps/libajax_la-ajrefseqread.Tpo -c ajrefseqread.c -o libajax_la-ajrefseqread.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtextwrite.lo -MD -MP -MF .deps/libajax_la-ajtextwrite.Tpo -c -o libajax_la-ajtextwrite.lo `test -f 'ajtextwrite.c' || echo './'`ajtextwrite.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajseqbam.lo -MD -MP -MF .deps/libajax_la-ajseqbam.Tpo -c ajseqbam.c -o libajax_la-ajseqbam.o >/dev/null 2>&1 In file included from ajtable.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajlist.lo -MD -MP -MF .deps/libajax_la-ajlist.Tpo -c ajlist.c -o libajax_la-ajlist.o >/dev/null 2>&1 In file included from ajtax.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajpdbio.lo -MD -MP -MF .deps/libajax_la-ajpdbio.Tpo -c ajpdbio.c -o libajax_la-ajpdbio.o >/dev/null 2>&1 In file included from ajtagval.c:26: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libajax_la-ajftp.Tpo .deps/libajax_la-ajftp.Plo mv -f .deps/libajax_la-ajfmt.Tpo .deps/libajax_la-ajfmt.Plo mv -f .deps/libajax_la-ajfiledata.Tpo .deps/libajax_la-ajfiledata.Plo mv -f .deps/libajax_la-ajdom.Tpo .deps/libajax_la-ajdom.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtime.lo -MD -MP -MF .deps/libajax_la-ajtime.Tpo -c -o libajax_la-ajtime.lo `test -f 'ajtime.c' || echo './'`ajtime.c In file included from ajsys.c:28: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libajax_la-ajobo.Tpo .deps/libajax_la-ajobo.Plo In file included from ajstr.c:53: In file included from ./ajstr.h:44: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajseqread.c:30: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ ajseqread.c:16412:20: warning: implicit conversion from enumeration type 'SeqEDesSwiss' to different enumeration type 'SeqESubSwiss' [-Wenum-conversion] 16412 | isub = SWISS_DES_UNK; | ~ ^~~~~~~~~~~~~ 2 warnings generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajdmx.lo -MD -MP -MF .deps/libajax_la-ajdmx.Tpo -c ajdmx.c -o libajax_la-ajdmx.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtranslate.lo -MD -MP -MF .deps/libajax_la-ajtranslate.Tpo -c -o libajax_la-ajtranslate.lo `test -f 'ajtranslate.c' || echo './'`ajtranslate.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajsort.lo -MD -MP -MF .deps/libajax_la-ajsort.Tpo -c ajsort.c -o libajax_la-ajsort.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtree.lo -MD -MP -MF .deps/libajax_la-ajtree.Tpo -c -o libajax_la-ajtree.lo `test -f 'ajtree.c' || echo './'`ajtree.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajmatrices.lo -MD -MP -MF .deps/libajax_la-ajmatrices.Tpo -c ajmatrices.c -o libajax_la-ajmatrices.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajseqtype.lo -MD -MP -MF .deps/libajax_la-ajseqtype.Tpo -c ajseqtype.c -o libajax_la-ajseqtype.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajsql.lo -MD -MP -MF .deps/libajax_la-ajsql.Tpo -c ajsql.c -o libajax_la-ajsql.o >/dev/null 2>&1 In file included from ajreg.c:32: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajurl.lo -MD -MP -MF .deps/libajax_la-ajurl.Tpo -c -o libajax_la-ajurl.lo `test -f 'ajurl.c' || echo './'`ajurl.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajurlread.lo -MD -MP -MF .deps/libajax_la-ajurlread.Tpo -c -o libajax_la-ajurlread.lo `test -f 'ajurlread.c' || echo './'`ajurlread.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtable.lo -MD -MP -MF .deps/libajax_la-ajtable.Tpo -c ajtable.c -o libajax_la-ajtable.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajoboread.Tpo .deps/libajax_la-ajoboread.Plo mv -f .deps/libajax_la-ajfeat.Tpo .deps/libajax_la-ajfeat.Plo mv -f .deps/libajax_la-ajmess.Tpo .deps/libajax_la-ajmess.Plo In file included from ajpat.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtax.lo -MD -MP -MF .deps/libajax_la-ajtax.Tpo -c ajtax.c -o libajax_la-ajtax.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtagval.lo -MD -MP -MF .deps/libajax_la-ajtagval.Tpo -c ajtagval.c -o libajax_la-ajtagval.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajurlwrite.lo -MD -MP -MF .deps/libajax_la-ajurlwrite.Tpo -c -o libajax_la-ajurlwrite.lo `test -f 'ajurlwrite.c' || echo './'`ajurlwrite.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajsys.lo -MD -MP -MF .deps/libajax_la-ajsys.Tpo -c ajsys.c -o libajax_la-ajsys.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajindex.Tpo .deps/libajax_la-ajindex.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajutil.lo -MD -MP -MF .deps/libajax_la-ajutil.Tpo -c -o libajax_la-ajutil.lo `test -f 'ajutil.c' || echo './'`ajutil.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajstr.lo -MD -MP -MF .deps/libajax_la-ajstr.Tpo -c ajstr.c -o libajax_la-ajstr.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajresource.Tpo .deps/libajax_la-ajresource.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajseqread.lo -MD -MP -MF .deps/libajax_la-ajseqread.Tpo -c ajseqread.c -o libajax_la-ajseqread.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajvar.lo -MD -MP -MF .deps/libajax_la-ajvar.Tpo -c -o libajax_la-ajvar.lo `test -f 'ajvar.c' || echo './'`ajvar.c In file included from ajfileio.c:29: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajvarbcf.lo -MD -MP -MF .deps/libajax_la-ajvarbcf.Tpo -c -o libajax_la-ajvarbcf.lo `test -f 'ajvarbcf.c' || echo './'`ajvarbcf.c mv -f .deps/libajax_la-ajfile.Tpo .deps/libajax_la-ajfile.Plo mv -f .deps/libajax_la-ajexcept.Tpo .deps/libajax_la-ajexcept.Plo mv -f .deps/libajax_la-ajassemread.Tpo .deps/libajax_la-ajassemread.Plo mv -f .deps/libajax_la-ajresourceread.Tpo .deps/libajax_la-ajresourceread.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajvarread.lo -MD -MP -MF .deps/libajax_la-ajvarread.Tpo -c -o libajax_la-ajvarread.lo `test -f 'ajvarread.c' || echo './'`ajvarread.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajvarwrite.lo -MD -MP -MF .deps/libajax_la-ajvarwrite.Tpo -c -o libajax_la-ajvarwrite.lo `test -f 'ajvarwrite.c' || echo './'`ajvarwrite.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajpat.lo -MD -MP -MF .deps/libajax_la-ajpat.Tpo -c ajpat.c -o libajax_la-ajpat.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajreg.lo -MD -MP -MF .deps/libajax_la-ajreg.Tpo -c ajreg.c -o libajax_la-ajreg.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajvector.lo -MD -MP -MF .deps/libajax_la-ajvector.Tpo -c -o libajax_la-ajvector.lo `test -f 'ajvector.c' || echo './'`ajvector.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajxml.lo -MD -MP -MF .deps/libajax_la-ajxml.Tpo -c -o libajax_la-ajxml.lo `test -f 'ajxml.c' || echo './'`ajxml.c mv -f .deps/libajax_la-ajlist.Tpo .deps/libajax_la-ajlist.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajfileio.lo -MD -MP -MF .deps/libajax_la-ajfileio.Tpo -c ajfileio.c -o libajax_la-ajfileio.o >/dev/null 2>&1 /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajxmlread.lo -MD -MP -MF .deps/libajax_la-ajxmlread.Tpo -c -o libajax_la-ajxmlread.lo `test -f 'ajxmlread.c' || echo './'`ajxmlread.c mv -f .deps/libajax_la-ajsort.Tpo .deps/libajax_la-ajsort.Plo mv -f .deps/libajax_la-ajrefseqread.Tpo .deps/libajax_la-ajrefseqread.Plo mv -f .deps/libajax_la-ajarr.Tpo .deps/libajax_la-ajarr.Plo /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"FreeBSD\"" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajxmlwrite.lo -MD -MP -MF .deps/libajax_la-ajxmlwrite.Tpo -c -o libajax_la-ajxmlwrite.lo `test -f 'ajxmlwrite.c' || echo './'`ajxmlwrite.c mv -f .deps/libajax_la-ajtagval.Tpo .deps/libajax_la-ajtagval.Plo mv -f .deps/libajax_la-ajtable.Tpo .deps/libajax_la-ajtable.Plo mv -f .deps/libajax_la-ajsql.Tpo .deps/libajax_la-ajsql.Plo mv -f .deps/libajax_la-ajrefseq.Tpo .deps/libajax_la-ajrefseq.Plo mv -f .deps/libajax_la-ajpat.Tpo .deps/libajax_la-ajpat.Plo mv -f .deps/libajax_la-ajmatrices.Tpo .deps/libajax_la-ajmatrices.Plo mv -f .deps/libajax_la-ajfeatwrite.Tpo .deps/libajax_la-ajfeatwrite.Plo mv -f .deps/libajax_la-ajdan.Tpo .deps/libajax_la-ajdan.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtaxread.lo -MD -MP -MF .deps/libajax_la-ajtaxread.Tpo -c ajtaxread.c -fPIC -DPIC -o .libs/libajax_la-ajtaxread.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtaxwrite.lo -MD -MP -MF .deps/libajax_la-ajtaxwrite.Tpo -c ajtaxwrite.c -fPIC -DPIC -o .libs/libajax_la-ajtaxwrite.o mv -f .deps/libajax_la-ajfeatread.Tpo .deps/libajax_la-ajfeatread.Plo In file included from ajrange.c:35: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libajax_la-ajmath.Tpo .deps/libajax_la-ajmath.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtextread.lo -MD -MP -MF .deps/libajax_la-ajtextread.Tpo -c ajtextread.c -fPIC -DPIC -o .libs/libajax_la-ajtextread.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtext.lo -MD -MP -MF .deps/libajax_la-ajtext.Tpo -c ajtext.c -fPIC -DPIC -o .libs/libajax_la-ajtext.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtextwrite.lo -MD -MP -MF .deps/libajax_la-ajtextwrite.Tpo -c ajtextwrite.c -fPIC -DPIC -o .libs/libajax_la-ajtextwrite.o In file included from ajtaxwrite.c:28: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ ajtaxwrite.c:257:46: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand] 257 | ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 2)); | ^ ~ ajtaxwrite.c:257:46: note: use '&' for a bitwise operation 257 | ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 2)); | ^~ | & ajtaxwrite.c:257:46: note: remove constant to silence this warning 257 | ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 2)); | ^~~~ ajtaxwrite.c:259:46: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand] 259 | ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 4)); | ^ ~ ajtaxwrite.c:259:46: note: use '&' for a bitwise operation 259 | ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 4)); | ^~ | & ajtaxwrite.c:259:46: note: remove constant to silence this warning 259 | ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 4)); | ^~~~ ajtaxwrite.c:260:46: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand] 260 | ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 8)); | ^ ~ ajtaxwrite.c:260:46: note: use '&' for a bitwise operation 260 | ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 8)); | ^~ | & ajtaxwrite.c:260:46: note: remove constant to silence this warning 260 | ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 8)); | ^~~~ ajtaxwrite.c:261:46: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand] 261 | ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 16)); | ^ ~~ ajtaxwrite.c:261:46: note: use '&' for a bitwise operation 261 | ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 16)); | ^~ | & ajtaxwrite.c:261:46: note: remove constant to silence this warning 261 | ajFmtPrintF(outf, "\t%u\t|", (tax->Flags && 16)); | ^~~~~ ajtaxwrite.c:311:51: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand] 311 | ajFmtPrintF(outf, "gcflag: %u\n", (tax->Flags && 2)); | ^ ~ ajtaxwrite.c:311:51: note: use '&' for a bitwise operation 311 | ajFmtPrintF(outf, "gcflag: %u\n", (tax->Flags && 2)); | ^~ | & ajtaxwrite.c:311:51: note: remove constant to silence this warning 311 | ajFmtPrintF(outf, "gcflag: %u\n", (tax->Flags && 2)); | ^~~~ ajtaxwrite.c:313:51: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand] 313 | ajFmtPrintF(outf, "mgcflag %u\n", (tax->Flags && 4)); | ^ ~ ajtaxwrite.c:313:51: note: use '&' for a bitwise operation 313 | ajFmtPrintF(outf, "mgcflag %u\n", (tax->Flags && 4)); | ^~ | & ajtaxwrite.c:313:51: note: remove constant to silence this warning 313 | ajFmtPrintF(outf, "mgcflag %u\n", (tax->Flags && 4)); | ^~~~ ajtaxwrite.c:314:51: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand] 314 | ajFmtPrintF(outf, "hidden: %u\n", (tax->Flags && 8)); | ^ ~ ajtaxwrite.c:314:51: note: use '&' for a bitwise operation 314 | ajFmtPrintF(outf, "hidden: %u\n", (tax->Flags && 8)); | ^~ | & ajtaxwrite.c:314:51: note: remove constant to silence this warning 314 | ajFmtPrintF(outf, "hidden: %u\n", (tax->Flags && 8)); | ^~~~ ajtaxwrite.c:315:55: warning: use of logical '&&' with constant operand [-Wconstant-logical-operand] 315 | ajFmtPrintF(outf, "nosequence: %u\n", (tax->Flags && 16)); | ^ ~~ ajtaxwrite.c:315:55: note: use '&' for a bitwise operation 315 | ajFmtPrintF(outf, "nosequence: %u\n", (tax->Flags && 16)); | ^~ | & ajtaxwrite.c:315:55: note: remove constant to silence this warning 315 | ajFmtPrintF(outf, "nosequence: %u\n", (tax->Flags && 16)); | ^~~~~ 9 warnings generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtime.lo -MD -MP -MF .deps/libajax_la-ajtime.Tpo -c ajtime.c -fPIC -DPIC -o .libs/libajax_la-ajtime.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtranslate.lo -MD -MP -MF .deps/libajax_la-ajtranslate.Tpo -c ajtranslate.c -fPIC -DPIC -o .libs/libajax_la-ajtranslate.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajrange.lo -MD -MP -MF .deps/libajax_la-ajrange.Tpo -c ajrange.c -o libajax_la-ajrange.o >/dev/null 2>&1 In file included from ajtext.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libajax_la-ajobowrite.Tpo .deps/libajax_la-ajobowrite.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtree.lo -MD -MP -MF .deps/libajax_la-ajtree.Tpo -c ajtree.c -fPIC -DPIC -o .libs/libajax_la-ajtree.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtaxwrite.lo -MD -MP -MF .deps/libajax_la-ajtaxwrite.Tpo -c ajtaxwrite.c -o libajax_la-ajtaxwrite.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajurl.lo -MD -MP -MF .deps/libajax_la-ajurl.Tpo -c ajurl.c -fPIC -DPIC -o .libs/libajax_la-ajurl.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajurlread.lo -MD -MP -MF .deps/libajax_la-ajurlread.Tpo -c ajurlread.c -fPIC -DPIC -o .libs/libajax_la-ajurlread.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajutil.lo -MD -MP -MF .deps/libajax_la-ajutil.Tpo -c ajutil.c -fPIC -DPIC -o .libs/libajax_la-ajutil.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajurlwrite.lo -MD -MP -MF .deps/libajax_la-ajurlwrite.Tpo -c ajurlwrite.c -fPIC -DPIC -o .libs/libajax_la-ajurlwrite.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajvar.lo -MD -MP -MF .deps/libajax_la-ajvar.Tpo -c ajvar.c -fPIC -DPIC -o .libs/libajax_la-ajvar.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtext.lo -MD -MP -MF .deps/libajax_la-ajtext.Tpo -c ajtext.c -o libajax_la-ajtext.o >/dev/null 2>&1 In file included from ajtranslate.c:126: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajvarbcf.lo -MD -MP -MF .deps/libajax_la-ajvarbcf.Tpo -c ajvarbcf.c -fPIC -DPIC -o .libs/libajax_la-ajvarbcf.o mv -f .deps/libajax_la-ajseq.Tpo .deps/libajax_la-ajseq.Plo In file included from ajtree.c:41: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajvarwrite.lo -MD -MP -MF .deps/libajax_la-ajvarwrite.Tpo -c ajvarwrite.c -fPIC -DPIC -o .libs/libajax_la-ajvarwrite.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajvarread.lo -MD -MP -MF .deps/libajax_la-ajvarread.Tpo -c ajvarread.c -fPIC -DPIC -o .libs/libajax_la-ajvarread.o In file included from ajurlread.c:30: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajvector.lo -MD -MP -MF .deps/libajax_la-ajvector.Tpo -c ajvector.c -fPIC -DPIC -o .libs/libajax_la-ajvector.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajxml.lo -MD -MP -MF .deps/libajax_la-ajxml.Tpo -c ajxml.c -fPIC -DPIC -o .libs/libajax_la-ajxml.o In file included from ajvar.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajxmlread.lo -MD -MP -MF .deps/libajax_la-ajxmlread.Tpo -c ajxmlread.c -fPIC -DPIC -o .libs/libajax_la-ajxmlread.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtranslate.lo -MD -MP -MF .deps/libajax_la-ajtranslate.Tpo -c ajtranslate.c -o libajax_la-ajtranslate.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajdomain.Tpo .deps/libajax_la-ajdomain.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtree.lo -MD -MP -MF .deps/libajax_la-ajtree.Tpo -c ajtree.c -o libajax_la-ajtree.o >/dev/null 2>&1 In file included from ajutil.c:28: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libajax_la-ajcod.Tpo .deps/libajax_la-ajcod.Plo In file included from ajvarbcf.c:56: In file included from ./ajstr.h:44: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajxmlwrite.lo -MD -MP -MF .deps/libajax_la-ajxmlwrite.Tpo -c ajxmlwrite.c -fPIC -DPIC -o .libs/libajax_la-ajxmlwrite.o mv -f .deps/libajax_la-ajtaxwrite.Tpo .deps/libajax_la-ajtaxwrite.Plo mv -f .deps/libajax_la-ajrange.Tpo .deps/libajax_la-ajrange.Plo mv -f .deps/libajax_la-ajreg.Tpo .deps/libajax_la-ajreg.Plo In file included from ajxml.c:30: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajvarwrite.c:28: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajvector.c:45: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajurlread.lo -MD -MP -MF .deps/libajax_la-ajurlread.Tpo -c ajurlread.c -o libajax_la-ajurlread.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajvar.lo -MD -MP -MF .deps/libajax_la-ajvar.Tpo -c ajvar.c -o libajax_la-ajvar.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajsys.Tpo .deps/libajax_la-ajsys.Plo In file included from ajxmlread.c:30: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajutil.lo -MD -MP -MF .deps/libajax_la-ajutil.Tpo -c ajutil.c -o libajax_la-ajutil.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajvarbcf.lo -MD -MP -MF .deps/libajax_la-ajvarbcf.Tpo -c ajvarbcf.c -o libajax_la-ajvarbcf.o >/dev/null 2>&1 In file included from ajxmlwrite.c:28: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajvarwrite.lo -MD -MP -MF .deps/libajax_la-ajvarwrite.Tpo -c ajvarwrite.c -o libajax_la-ajvarwrite.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajxml.lo -MD -MP -MF .deps/libajax_la-ajxml.Tpo -c ajxml.c -o libajax_la-ajxml.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajvector.lo -MD -MP -MF .deps/libajax_la-ajvector.Tpo -c ajvector.c -o libajax_la-ajvector.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajxmlread.lo -MD -MP -MF .deps/libajax_la-ajxmlread.Tpo -c ajxmlread.c -o libajax_la-ajxmlread.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajpdbio.Tpo .deps/libajax_la-ajpdbio.Plo mv -f .deps/libajax_la-ajtranslate.Tpo .deps/libajax_la-ajtranslate.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajxmlwrite.lo -MD -MP -MF .deps/libajax_la-ajxmlwrite.Tpo -c ajxmlwrite.c -o libajax_la-ajxmlwrite.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajseqread.Tpo .deps/libajax_la-ajseqread.Plo In file included from ajrefseqwrite.c:28: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libajax_la-ajreport.Tpo .deps/libajax_la-ajreport.Plo mv -f .deps/libajax_la-ajvar.Tpo .deps/libajax_la-ajvar.Plo mv -f .deps/libajax_la-ajurlread.Tpo .deps/libajax_la-ajurlread.Plo mv -f .deps/libajax_la-ajhttp.Tpo .deps/libajax_la-ajhttp.Plo mv -f .deps/libajax_la-ajbase.Tpo .deps/libajax_la-ajbase.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajrefseqwrite.lo -MD -MP -MF .deps/libajax_la-ajrefseqwrite.Tpo -c ajrefseqwrite.c -o libajax_la-ajrefseqwrite.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajvector.Tpo .deps/libajax_la-ajvector.Plo mv -f .deps/libajax_la-ajxml.Tpo .deps/libajax_la-ajxml.Plo mv -f .deps/libajax_la-ajvarbcf.Tpo .deps/libajax_la-ajvarbcf.Plo mv -f .deps/libajax_la-ajdmx.Tpo .deps/libajax_la-ajdmx.Plo mv -f .deps/libajax_la-ajvarwrite.Tpo .deps/libajax_la-ajvarwrite.Plo mv -f .deps/libajax_la-ajxmlwrite.Tpo .deps/libajax_la-ajxmlwrite.Plo mv -f .deps/libajax_la-ajphylo.Tpo .deps/libajax_la-ajphylo.Plo mv -f .deps/libajax_la-ajfileio.Tpo .deps/libajax_la-ajfileio.Plo In file included from ajquery.c:28: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajquery.lo -MD -MP -MF .deps/libajax_la-ajquery.Tpo -c ajquery.c -o libajax_la-ajquery.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajtree.Tpo .deps/libajax_la-ajtree.Plo mv -f .deps/libajax_la-ajseqtype.Tpo .deps/libajax_la-ajseqtype.Plo In file included from ajvarread.c:30: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajtime.c:30: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajseqabi.c:30: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajvarread.lo -MD -MP -MF .deps/libajax_la-ajvarread.Tpo -c ajvarread.c -o libajax_la-ajvarread.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajpdb.Tpo .deps/libajax_la-ajpdb.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtime.lo -MD -MP -MF .deps/libajax_la-ajtime.Tpo -c ajtime.c -o libajax_la-ajtime.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajquery.Tpo .deps/libajax_la-ajquery.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajseqabi.lo -MD -MP -MF .deps/libajax_la-ajseqabi.Tpo -c ajseqabi.c -o libajax_la-ajseqabi.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajnexus.Tpo .deps/libajax_la-ajnexus.Plo In file included from ajtextwrite.c:29: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajtextread.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libajax_la-ajnam.Tpo .deps/libajax_la-ajnam.Plo mv -f .deps/libajax_la-ajtax.Tpo .deps/libajax_la-ajtax.Plo In file included from ajmem.c:31: In file included from ./ajmem.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libajax_la-ajvarread.Tpo .deps/libajax_la-ajvarread.Plo mv -f .deps/libajax_la-ajtime.Tpo .deps/libajax_la-ajtime.Plo In file included from ajseqwrite.c:28: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libajax_la-ajseqabi.Tpo .deps/libajax_la-ajseqabi.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtextread.lo -MD -MP -MF .deps/libajax_la-ajtextread.Tpo -c ajtextread.c -o libajax_la-ajtextread.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtextwrite.lo -MD -MP -MF .deps/libajax_la-ajtextwrite.Tpo -c ajtextwrite.c -o libajax_la-ajtextwrite.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajmem.lo -MD -MP -MF .deps/libajax_la-ajmem.Tpo -c ajmem.c -o libajax_la-ajmem.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajutil.Tpo .deps/libajax_la-ajutil.Plo In file included from ajurl.c:31: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajseqwrite.lo -MD -MP -MF .deps/libajax_la-ajseqwrite.Tpo -c ajseqwrite.c -o libajax_la-ajseqwrite.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajurl.lo -MD -MP -MF .deps/libajax_la-ajurl.Tpo -c ajurl.c -o libajax_la-ajurl.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajtextwrite.Tpo .deps/libajax_la-ajtextwrite.Plo mv -f .deps/libajax_la-ajxmlread.Tpo .deps/libajax_la-ajxmlread.Plo mv -f .deps/libajax_la-ajtextread.Tpo .deps/libajax_la-ajtextread.Plo mv -f .deps/libajax_la-ajmem.Tpo .deps/libajax_la-ajmem.Plo mv -f .deps/libajax_la-ajseqbam.Tpo .deps/libajax_la-ajseqbam.Plo In file included from ajurlwrite.c:28: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libajax_la-ajseqwrite.Tpo .deps/libajax_la-ajseqwrite.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajurlwrite.lo -MD -MP -MF .deps/libajax_la-ajurlwrite.Tpo -c ajurlwrite.c -o libajax_la-ajurlwrite.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajrefseqwrite.Tpo .deps/libajax_la-ajrefseqwrite.Plo mv -f .deps/libajax_la-ajurlwrite.Tpo .deps/libajax_la-ajurlwrite.Plo mv -f .deps/libajax_la-ajtext.Tpo .deps/libajax_la-ajtext.Plo mv -f .deps/libajax_la-ajurl.Tpo .deps/libajax_la-ajurl.Plo mv -f .deps/libajax_la-ajresourcewrite.Tpo .deps/libajax_la-ajresourcewrite.Plo In file included from ajtaxread.c:30: In file included from ./ajlib.h:34: ./ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -I/usr/local/include -DAJAX_FIXED_ROOT=\"/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"FreeBSD\" -DPREFIX=\"/usr/local/emboss\" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajax_la-ajtaxread.lo -MD -MP -MF .deps/libajax_la-ajtaxread.Tpo -c ajtaxread.c -o libajax_la-ajtaxread.o >/dev/null 2>&1 mv -f .deps/libajax_la-ajstr.Tpo .deps/libajax_la-ajstr.Plo mv -f .deps/libajax_la-ajtaxread.Tpo .deps/libajax_la-ajtaxread.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -version-info 6:5:0 -L/usr/local/lib -lpq -L/usr/local/lib -L/usr/local/lib -o libajax.la -rpath /usr/local/emboss/lib libajax_la-ajalign.lo libajax_la-ajarr.lo libajax_la-ajassem.lo libajax_la-ajassemread.lo libajax_la-ajassemwrite.lo libajax_la-ajassert.lo libajax_la-ajbamindex.lo libajax_la-ajbase.lo libajax_la-ajcall.lo libajax_la-ajcigar.lo libajax_la-ajcod.lo libajax_la-ajdan.lo libajax_la-ajdmx.lo libajax_la-ajdom.lo libajax_la-ajdomain.lo libajax_la-ajexcept.lo libajax_la-ajfeat.lo libajax_la-ajfeatread.lo libajax_la-ajfeatwrite.lo libajax_la-ajfile.lo libajax_la-ajfiledata.lo libajax_la-ajfileio.lo libajax_la-ajfmt.lo libajax_la-ajftp.lo libajax_la-ajhttp.lo libajax_la-ajindex.lo libajax_la-ajjava.lo libajax_la-ajlist.lo libajax_la-ajmath.lo libajax_la-ajmatrices.lo libajax_la-ajmem.lo libajax_la-ajmess.lo libajax_la-ajnam.lo libajax_la-ajnexus.lo libajax_la-ajobo.lo libajax_la-ajoboread.lo libajax_la-ajobowrite.lo libajax_la-ajpat.lo libajax_la-ajpdb.lo libajax_la-ajpdbio.lo libajax_la-ajphylo.lo libajax_la-ajquery.lo libajax_la-ajrange.lo libajax_la-ajreg.lo libajax_la-ajreport.lo libajax_la-ajrefseq.lo libajax_la-ajrefseqread.lo libajax_la-ajrefseqwrite.lo libajax_la-ajresource.lo libajax_la-ajresourceread.lo libajax_la-ajresourcewrite.lo libajax_la-ajseq.lo libajax_la-ajseqabi.lo libajax_la-ajseqbam.lo libajax_la-ajseqread.lo libajax_la-ajseqtype.lo libajax_la-ajseqwrite.lo libajax_la-ajsort.lo libajax_la-ajsql.lo libajax_la-ajstr.lo libajax_la-ajsys.lo libajax_la-ajtable.lo libajax_la-ajtagval.lo libajax_la-ajtax.lo libajax_la-ajtaxread.lo libajax_la-ajtaxwrite.lo libajax_la-ajtext.lo libajax_la-ajtextread.lo libajax_la-ajtextwrite.lo libajax_la-ajtime.lo libajax_la-ajtranslate.lo libajax_la-ajtree.lo libajax_la-ajurl.lo libajax_la-ajurlread.lo libajax_la-ajurlwrite.lo libajax_la-ajutil.lo libajax_la-ajvar.lo libajax_la-ajvarbcf.lo libajax_la-ajvarread.lo libajax_la-ajvarwrite.lo libajax_la-ajvector.lo libajax_la-ajxml.lo libajax_la-ajxmlread.lo libajax_la-ajxmlwrite.lo -lm -lgd -lpng -lz -lm libtool: link: cc -shared -fPIC -DPIC .libs/libajax_la-ajalign.o .libs/libajax_la-ajarr.o .libs/libajax_la-ajassem.o .libs/libajax_la-ajassemread.o .libs/libajax_la-ajassemwrite.o .libs/libajax_la-ajassert.o .libs/libajax_la-ajbamindex.o .libs/libajax_la-ajbase.o .libs/libajax_la-ajcall.o .libs/libajax_la-ajcigar.o .libs/libajax_la-ajcod.o .libs/libajax_la-ajdan.o .libs/libajax_la-ajdmx.o .libs/libajax_la-ajdom.o .libs/libajax_la-ajdomain.o .libs/libajax_la-ajexcept.o .libs/libajax_la-ajfeat.o .libs/libajax_la-ajfeatread.o .libs/libajax_la-ajfeatwrite.o .libs/libajax_la-ajfile.o .libs/libajax_la-ajfiledata.o .libs/libajax_la-ajfileio.o .libs/libajax_la-ajfmt.o .libs/libajax_la-ajftp.o .libs/libajax_la-ajhttp.o .libs/libajax_la-ajindex.o .libs/libajax_la-ajjava.o .libs/libajax_la-ajlist.o .libs/libajax_la-ajmath.o .libs/libajax_la-ajmatrices.o .libs/libajax_la-ajmem.o .libs/libajax_la-ajmess.o .libs/libajax_la-ajnam.o .libs/libajax_la-ajnexus.o .libs/libajax_la-ajobo.o .libs/libajax_la-ajoboread.o .libs/libajax_la-ajobowrite.o .libs/libajax_la-ajpat.o .libs/libajax_la-ajpdb.o .libs/libajax_la-ajpdbio.o .libs/libajax_la-ajphylo.o .libs/libajax_la-ajquery.o .libs/libajax_la-ajrange.o .libs/libajax_la-ajreg.o .libs/libajax_la-ajreport.o .libs/libajax_la-ajrefseq.o .libs/libajax_la-ajrefseqread.o .libs/libajax_la-ajrefseqwrite.o .libs/libajax_la-ajresource.o .libs/libajax_la-ajresourceread.o .libs/libajax_la-ajresourcewrite.o .libs/libajax_la-ajseq.o .libs/libajax_la-ajseqabi.o .libs/libajax_la-ajseqbam.o .libs/libajax_la-ajseqread.o .libs/libajax_la-ajseqtype.o .libs/libajax_la-ajseqwrite.o .libs/libajax_la-ajsort.o .libs/libajax_la-ajsql.o .libs/libajax_la-ajstr.o .libs/libajax_la-ajsys.o .libs/libajax_la-ajtable.o .libs/libajax_la-ajtagval.o .libs/libajax_la-ajtax.o .libs/libajax_la-ajtaxread.o .libs/libajax_la-ajtaxwrite.o .libs/libajax_la-ajtext.o .libs/libajax_la-ajtextread.o .libs/libajax_la-ajtextwrite.o .libs/libajax_la-ajtime.o .libs/libajax_la-ajtranslate.o .libs/libajax_la-ajtree.o .libs/libajax_la-ajurl.o .libs/libajax_la-ajurlread.o .libs/libajax_la-ajurlwrite.o .libs/libajax_la-ajutil.o .libs/libajax_la-ajvar.o .libs/libajax_la-ajvarbcf.o .libs/libajax_la-ajvarread.o .libs/libajax_la-ajvarwrite.o .libs/libajax_la-ajvector.o .libs/libajax_la-ajxml.o .libs/libajax_la-ajxmlread.o .libs/libajax_la-ajxmlwrite.o -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib -lpq /usr/local/lib/libgd.so -lpng -lz -lm -O2 -fstack-protector-strong -O2 -Wl,-soname -Wl,libajax.so.6 -o .libs/libajax.so.6.0.5 libtool: link: (cd ".libs" && rm -f "libajax.so.6" && ln -s "libajax.so.6.0.5" "libajax.so.6") libtool: link: (cd ".libs" && rm -f "libajax.so" && ln -s "libajax.so.6.0.5" "libajax.so") libtool: link: ar cru .libs/libajax.a libajax_la-ajalign.o libajax_la-ajarr.o libajax_la-ajassem.o libajax_la-ajassemread.o libajax_la-ajassemwrite.o libajax_la-ajassert.o libajax_la-ajbamindex.o libajax_la-ajbase.o libajax_la-ajcall.o libajax_la-ajcigar.o libajax_la-ajcod.o libajax_la-ajdan.o libajax_la-ajdmx.o libajax_la-ajdom.o libajax_la-ajdomain.o libajax_la-ajexcept.o libajax_la-ajfeat.o libajax_la-ajfeatread.o libajax_la-ajfeatwrite.o libajax_la-ajfile.o libajax_la-ajfiledata.o libajax_la-ajfileio.o libajax_la-ajfmt.o libajax_la-ajftp.o libajax_la-ajhttp.o libajax_la-ajindex.o libajax_la-ajjava.o libajax_la-ajlist.o libajax_la-ajmath.o libajax_la-ajmatrices.o libajax_la-ajmem.o libajax_la-ajmess.o libajax_la-ajnam.o libajax_la-ajnexus.o libajax_la-ajobo.o libajax_la-ajoboread.o libajax_la-ajobowrite.o libajax_la-ajpat.o libajax_la-ajpdb.o libajax_la-ajpdbio.o libajax_la-ajphylo.o libajax_la-ajquery.o libajax_la-ajrange.o libajax_la-ajreg.o libajax_la-ajreport.o libajax_la-ajrefseq.o libajax_la-ajrefseqread.o libajax_la-ajrefseqwrite.o libajax_la-ajresource.o libajax_la-ajresourceread.o libajax_la-ajresourcewrite.o libajax_la-ajseq.o libajax_la-ajseqabi.o libajax_la-ajseqbam.o libajax_la-ajseqread.o libajax_la-ajseqtype.o libajax_la-ajseqwrite.o libajax_la-ajsort.o libajax_la-ajsql.o libajax_la-ajstr.o libajax_la-ajsys.o libajax_la-ajtable.o libajax_la-ajtagval.o libajax_la-ajtax.o libajax_la-ajtaxread.o libajax_la-ajtaxwrite.o libajax_la-ajtext.o libajax_la-ajtextread.o libajax_la-ajtextwrite.o libajax_la-ajtime.o libajax_la-ajtranslate.o libajax_la-ajtree.o libajax_la-ajurl.o libajax_la-ajurlread.o libajax_la-ajurlwrite.o libajax_la-ajutil.o libajax_la-ajvar.o libajax_la-ajvarbcf.o libajax_la-ajvarread.o libajax_la-ajvarwrite.o libajax_la-ajvector.o libajax_la-ajxml.o libajax_la-ajxmlread.o libajax_la-ajxmlwrite.o libtool: link: ranlib .libs/libajax.a libtool: link: ( cd ".libs" && rm -f "libajax.la" && ln -s "../libajax.la" "libajax.la" ) gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' Making all in graphics gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/graphics' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxg_la-ajgraph.lo -MD -MP -MF .deps/libajaxg_la-ajgraph.Tpo -c -o libajaxg_la-ajgraph.lo `test -f 'ajgraph.c' || echo './'`ajgraph.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxg_la-ajhist.lo -MD -MP -MF .deps/libajaxg_la-ajhist.Tpo -c -o libajaxg_la-ajhist.lo `test -f 'ajhist.c' || echo './'`ajhist.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxg_la-ajhist.lo -MD -MP -MF .deps/libajaxg_la-ajhist.Tpo -c ajhist.c -fPIC -DPIC -o .libs/libajaxg_la-ajhist.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxg_la-ajgraph.lo -MD -MP -MF .deps/libajaxg_la-ajgraph.Tpo -c ajgraph.c -fPIC -DPIC -o .libs/libajaxg_la-ajgraph.o In file included from ajhist.c:32: In file included from ../../ajax/core/ajlib.h:34: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxg_la-ajhist.lo -MD -MP -MF .deps/libajaxg_la-ajhist.Tpo -c ajhist.c -o libajaxg_la-ajhist.o >/dev/null 2>&1 mv -f .deps/libajaxg_la-ajhist.Tpo .deps/libajaxg_la-ajhist.Plo In file included from ajgraph.c:33: In file included from ../../ajax/core/ajlib.h:34: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxg_la-ajgraph.lo -MD -MP -MF .deps/libajaxg_la-ajgraph.Tpo -c ajgraph.c -o libajaxg_la-ajgraph.o >/dev/null 2>&1 mv -f .deps/libajaxg_la-ajgraph.Tpo .deps/libajaxg_la-ajgraph.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -version-info 6:5:0 -L/usr/local/lib -L/usr/local/lib -o libajaxg.la -rpath /usr/local/emboss/lib libajaxg_la-ajgraph.lo libajaxg_la-ajhist.lo -lm -lgd -lpng -lz -lm libtool: link: cc -shared -fPIC -DPIC .libs/libajaxg_la-ajgraph.o .libs/libajaxg_la-ajhist.o -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib /usr/local/lib/libgd.so -lpng -lz -lm -O2 -fstack-protector-strong -O2 -Wl,-soname -Wl,libajaxg.so.6 -o .libs/libajaxg.so.6.0.5 libtool: link: (cd ".libs" && rm -f "libajaxg.so.6" && ln -s "libajaxg.so.6.0.5" "libajaxg.so.6") libtool: link: (cd ".libs" && rm -f "libajaxg.so" && ln -s "libajaxg.so.6.0.5" "libajaxg.so") libtool: link: ar cru .libs/libajaxg.a libajaxg_la-ajgraph.o libajaxg_la-ajhist.o libtool: link: ranlib .libs/libajaxg.a libtool: link: ( cd ".libs" && rm -f "libajaxg.la" && ln -s "../libajaxg.la" "libajaxg.la" ) gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/graphics' Making all in ensembl gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/ensembl' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensalign.lo -MD -MP -MF .deps/libensembl_la-ensalign.Tpo -c -o libensembl_la-ensalign.lo `test -f 'ensalign.c' || echo './'`ensalign.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensanalysis.lo -MD -MP -MF .deps/libensembl_la-ensanalysis.Tpo -c -o libensembl_la-ensanalysis.lo `test -f 'ensanalysis.c' || echo './'`ensanalysis.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensassembly.lo -MD -MP -MF .deps/libensembl_la-ensassembly.Tpo -c -o libensembl_la-ensassembly.lo `test -f 'ensassembly.c' || echo './'`ensassembly.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensassemblyexception.lo -MD -MP -MF .deps/libensembl_la-ensassemblyexception.Tpo -c -o libensembl_la-ensassemblyexception.lo `test -f 'ensassemblyexception.c' || echo './'`ensassemblyexception.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensassemblymapper.lo -MD -MP -MF .deps/libensembl_la-ensassemblymapper.Tpo -c -o libensembl_la-ensassemblymapper.lo `test -f 'ensassemblymapper.c' || echo './'`ensassemblymapper.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem 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-I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensregistry.lo -MD -MP -MF .deps/libensembl_la-ensregistry.Tpo -c -o libensembl_la-ensregistry.lo `test -f 'ensregistry.c' || echo './'`ensregistry.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensrepeat.lo -MD -MP -MF .deps/libensembl_la-ensrepeat.Tpo -c -o libensembl_la-ensrepeat.lo `test -f 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-DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enssimple.lo -MD -MP -MF .deps/libensembl_la-enssimple.Tpo -c -o libensembl_la-enssimple.lo `test -f 'enssimple.c' || echo './'`enssimple.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensslice.lo -MD -MP -MF .deps/libensembl_la-ensslice.Tpo -c -o libensembl_la-ensslice.lo `test -f 'ensslice.c' || echo './'`ensslice.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enssoftware.lo -MD -MP -MF .deps/libensembl_la-enssoftware.Tpo -c -o libensembl_la-enssoftware.lo `test -f 'enssoftware.c' || echo './'`enssoftware.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensanalysis.lo -MD -MP -MF .deps/libensembl_la-ensanalysis.Tpo -c ensanalysis.c -fPIC -DPIC -o .libs/libensembl_la-ensanalysis.o /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensstorable.lo -MD -MP -MF .deps/libensembl_la-ensstorable.Tpo -c -o libensembl_la-ensstorable.lo `test -f 'ensstorable.c' || echo './'`ensstorable.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensalign.lo -MD -MP -MF .deps/libensembl_la-ensalign.Tpo -c ensalign.c -fPIC -DPIC -o .libs/libensembl_la-ensalign.o /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enstable.lo -MD -MP -MF .deps/libensembl_la-enstable.Tpo -c -o libensembl_la-enstable.lo `test -f 'enstable.c' || echo './'`enstable.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensassemblymapper.lo -MD -MP -MF .deps/libensembl_la-ensassemblymapper.Tpo -c ensassemblymapper.c -fPIC -DPIC -o .libs/libensembl_la-ensassemblymapper.o /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enstranscript.lo -MD -MP -MF .deps/libensembl_la-enstranscript.Tpo -c -o libensembl_la-enstranscript.lo `test -f 'enstranscript.c' || 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.deps/libensembl_la-ensbaseadaptor.Tpo -c ensbaseadaptor.c -fPIC -DPIC -o .libs/libensembl_la-ensbaseadaptor.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensattribute.lo -MD -MP -MF .deps/libensembl_la-ensattribute.Tpo -c ensattribute.c -fPIC -DPIC -o .libs/libensembl_la-ensattribute.o /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enstranslation.lo -MD -MP -MF .deps/libensembl_la-enstranslation.Tpo -c -o libensembl_la-enstranslation.lo `test -f 'enstranslation.c' || echo './'`enstranslation.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensassemblyexception.lo -MD -MP -MF .deps/libensembl_la-ensassemblyexception.Tpo -c ensassemblyexception.c -fPIC -DPIC -o .libs/libensembl_la-ensassemblyexception.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensdatabaseadaptor.lo -MD -MP -MF .deps/libensembl_la-ensdatabaseadaptor.Tpo -c ensdatabaseadaptor.c -fPIC -DPIC -o .libs/libensembl_la-ensdatabaseadaptor.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enscoordsystem.lo -MD -MP -MF .deps/libensembl_la-enscoordsystem.Tpo -c enscoordsystem.c -fPIC -DPIC -o .libs/libensembl_la-enscoordsystem.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensditag.lo -MD -MP -MF .deps/libensembl_la-ensditag.Tpo -c ensditag.c -fPIC -DPIC -o .libs/libensembl_la-ensditag.o /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensutility.lo -MD -MP -MF .deps/libensembl_la-ensutility.Tpo -c -o libensembl_la-ensutility.lo `test -f 'ensutility.c' || echo './'`ensutility.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensassembly.lo -MD -MP -MF .deps/libensembl_la-ensassembly.Tpo -c ensassembly.c -fPIC -DPIC -o .libs/libensembl_la-ensassembly.o /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensvariation.lo -MD -MP -MF .deps/libensembl_la-ensvariation.Tpo -c -o libensembl_la-ensvariation.lo `test -f 'ensvariation.c' || echo './'`ensvariation.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensdatabaseentry.lo -MD -MP -MF .deps/libensembl_la-ensdatabaseentry.Tpo -c ensdatabaseentry.c -fPIC -DPIC -o .libs/libensembl_la-ensdatabaseentry.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgene.lo -MD -MP -MF .deps/libensembl_la-ensgene.Tpo -c ensgene.c -fPIC -DPIC -o .libs/libensembl_la-ensgene.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvallele.lo -MD -MP -MF .deps/libensembl_la-ensgvallele.Tpo -c ensgvallele.c -fPIC -DPIC -o .libs/libensembl_la-ensgvallele.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensdatabaseconnection.lo -MD -MP -MF .deps/libensembl_la-ensdatabaseconnection.Tpo -c ensdatabaseconnection.c -fPIC -DPIC -o .libs/libensembl_la-ensdatabaseconnection.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensdensity.lo -MD -MP -MF .deps/libensembl_la-ensdensity.Tpo -c ensdensity.c -fPIC -DPIC -o .libs/libensembl_la-ensdensity.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvattribute.lo -MD -MP -MF .deps/libensembl_la-ensgvattribute.Tpo -c ensgvattribute.c -fPIC -DPIC -o .libs/libensembl_la-ensgvattribute.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvbaseadaptor.lo -MD -MP -MF .deps/libensembl_la-ensgvbaseadaptor.Tpo -c ensgvbaseadaptor.c -fPIC -DPIC -o .libs/libensembl_la-ensgvbaseadaptor.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensfeature.lo -MD -MP -MF .deps/libensembl_la-ensfeature.Tpo -c ensfeature.c -fPIC -DPIC -o .libs/libensembl_la-ensfeature.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensexon.lo -MD -MP -MF .deps/libensembl_la-ensexon.Tpo -c ensexon.c -fPIC -DPIC -o .libs/libensembl_la-ensexon.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensexternaldatabase.lo -MD -MP -MF .deps/libensembl_la-ensexternaldatabase.Tpo -c ensexternaldatabase.c -fPIC -DPIC -o .libs/libensembl_la-ensexternaldatabase.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvpopulation.lo -MD -MP -MF .deps/libensembl_la-ensgvpopulation.Tpo -c ensgvpopulation.c -fPIC -DPIC -o .libs/libensembl_la-ensgvpopulation.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvdatabaseadaptor.lo -MD -MP -MF .deps/libensembl_la-ensgvdatabaseadaptor.Tpo -c ensgvdatabaseadaptor.c -fPIC -DPIC -o .libs/libensembl_la-ensgvdatabaseadaptor.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvgenotype.lo -MD -MP -MF .deps/libensembl_la-ensgvgenotype.Tpo -c ensgvgenotype.c -fPIC -DPIC -o .libs/libensembl_la-ensgvgenotype.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvsample.lo -MD -MP -MF .deps/libensembl_la-ensgvsample.Tpo -c ensgvsample.c -fPIC -DPIC -o .libs/libensembl_la-ensgvsample.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvsource.lo -MD -MP -MF .deps/libensembl_la-ensgvsource.Tpo -c ensgvsource.c -fPIC -DPIC -o .libs/libensembl_la-ensgvsource.o In file included from ensanalysis.c:33: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvvariation.lo -MD -MP -MF .deps/libensembl_la-ensgvvariation.Tpo -c ensgvvariation.c -fPIC -DPIC -o .libs/libensembl_la-ensgvvariation.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensintron.lo -MD -MP -MF .deps/libensembl_la-ensintron.Tpo -c ensintron.c -fPIC -DPIC -o .libs/libensembl_la-ensintron.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvsynonym.lo -MD -MP -MF .deps/libensembl_la-ensgvsynonym.Tpo -c ensgvsynonym.c -fPIC -DPIC -o .libs/libensembl_la-ensgvsynonym.o In file included from ensbaseadaptor.c:33: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ensdatabaseadaptor.c:33: In file included from ./ensdatabaseadaptor.h:36: In file included from ./ensdatabaseconnection.h:35: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvindividual.lo -MD -MP -MF .deps/libensembl_la-ensgvindividual.Tpo -c ensgvindividual.c -fPIC -DPIC -o .libs/libensembl_la-ensgvindividual.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensmarker.lo -MD -MP -MF .deps/libensembl_la-ensmarker.Tpo -c ensmarker.c -fPIC -DPIC -o .libs/libensembl_la-ensmarker.o In file included from enscache.c:33: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from enscoordsystem.c:33: In file included from ./enscoordsystem.h:36: In file included from ./ensdatabaseadaptor.h:36: In file included from ./ensdatabaseconnection.h:35: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensmetainformation.lo -MD -MP -MF .deps/libensembl_la-ensmetainformation.Tpo -c ensmetainformation.c -fPIC -DPIC -o .libs/libensembl_la-ensmetainformation.o In file included from ensditag.c:33: In file included from ./ensditag.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enskaryotype.lo -MD -MP -MF .deps/libensembl_la-enskaryotype.Tpo -c enskaryotype.c -fPIC -DPIC -o .libs/libensembl_la-enskaryotype.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensmapper.lo -MD -MP -MF .deps/libensembl_la-ensmapper.Tpo -c ensmapper.c -fPIC -DPIC -o .libs/libensembl_la-ensmapper.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensmetacoordinate.lo -MD -MP -MF .deps/libensembl_la-ensmetacoordinate.Tpo -c ensmetacoordinate.c -fPIC -DPIC -o .libs/libensembl_la-ensmetacoordinate.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensprediction.lo -MD -MP -MF .deps/libensembl_la-ensprediction.Tpo -c ensprediction.c -fPIC -DPIC -o .libs/libensembl_la-ensprediction.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensqcalignment.lo -MD -MP -MF .deps/libensembl_la-ensqcalignment.Tpo -c ensqcalignment.c -fPIC -DPIC -o .libs/libensembl_la-ensqcalignment.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensqcdasfeature.lo -MD -MP -MF .deps/libensembl_la-ensqcdasfeature.Tpo -c ensqcdasfeature.c -fPIC -DPIC -o .libs/libensembl_la-ensqcdasfeature.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensontology.lo -MD -MP -MF .deps/libensembl_la-ensontology.Tpo -c ensontology.c -fPIC -DPIC -o .libs/libensembl_la-ensontology.o In file included from ensassemblymapper.c:33: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ensdensity.c:33: In file included from ./ensdensity.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ensassembly.c:33: In file included from ./ensassembly.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensdatabaseadaptor.lo -MD -MP -MF .deps/libensembl_la-ensdatabaseadaptor.Tpo -c ensdatabaseadaptor.c -o libensembl_la-ensdatabaseadaptor.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensprojectionsegment.lo -MD -MP -MF .deps/libensembl_la-ensprojectionsegment.Tpo -c ensprojectionsegment.c -fPIC -DPIC -o .libs/libensembl_la-ensprojectionsegment.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensqc.lo -MD -MP -MF .deps/libensembl_la-ensqc.Tpo -c ensqc.c -fPIC -DPIC -o .libs/libensembl_la-ensqc.o In file included from ensgvallele.c:33: In file included from ./ensgvallele.h:36: In file included from ./ensgvdata.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ensdatabaseconnection.c:32: In file included from ./ensdatabaseconnection.h:35: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensanalysis.lo -MD -MP -MF .deps/libensembl_la-ensanalysis.Tpo -c ensanalysis.c -o libensembl_la-ensanalysis.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensprotein.lo -MD -MP -MF .deps/libensembl_la-ensprotein.Tpo -c ensprotein.c -fPIC -DPIC -o .libs/libensembl_la-ensprotein.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensbaseadaptor.lo -MD -MP -MF .deps/libensembl_la-ensbaseadaptor.Tpo -c ensbaseadaptor.c -o libensembl_la-ensbaseadaptor.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensoperon.lo -MD -MP -MF .deps/libensembl_la-ensoperon.Tpo -c ensoperon.c -fPIC -DPIC -o .libs/libensembl_la-ensoperon.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensmiscellaneous.lo -MD -MP -MF .deps/libensembl_la-ensmiscellaneous.Tpo -c ensmiscellaneous.c -fPIC -DPIC -o .libs/libensembl_la-ensmiscellaneous.o In file included from ensfeature.c:33: In file included from ./ensexternaldatabase.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ensgvattribute.c:33: In file included from ./ensattribute.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ensgvbaseadaptor.c:33: In file included from ./ensgvbaseadaptor.h:36: In file included from ./ensgvdata.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensqcdatabase.lo -MD -MP -MF .deps/libensembl_la-ensqcdatabase.Tpo -c ensqcdatabase.c -fPIC -DPIC -o .libs/libensembl_la-ensqcdatabase.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enscache.lo -MD -MP -MF .deps/libensembl_la-enscache.Tpo -c enscache.c -o libensembl_la-enscache.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensditag.lo -MD -MP -MF .deps/libensembl_la-ensditag.Tpo -c ensditag.c -o libensembl_la-ensditag.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensseqregion.lo -MD -MP -MF .deps/libensembl_la-ensseqregion.Tpo -c ensseqregion.c -fPIC -DPIC -o .libs/libensembl_la-ensseqregion.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enscoordsystem.lo -MD -MP -MF .deps/libensembl_la-enscoordsystem.Tpo -c enscoordsystem.c -o libensembl_la-enscoordsystem.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensqcvariation.lo -MD -MP -MF .deps/libensembl_la-ensqcvariation.Tpo -c ensqcvariation.c -fPIC -DPIC -o .libs/libensembl_la-ensqcvariation.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensrepeat.lo -MD -MP -MF .deps/libensembl_la-ensrepeat.Tpo -c ensrepeat.c -fPIC -DPIC -o .libs/libensembl_la-ensrepeat.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensqcsequence.lo -MD -MP -MF .deps/libensembl_la-ensqcsequence.Tpo -c ensqcsequence.c -fPIC -DPIC -o .libs/libensembl_la-ensqcsequence.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enssequence.lo -MD -MP -MF .deps/libensembl_la-enssequence.Tpo -c enssequence.c -fPIC -DPIC -o .libs/libensembl_la-enssequence.o In file included from ensgvsample.c:33: In file included from ./ensgvsample.h:36: In file included from ./ensgvdata.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensassembly.lo -MD -MP -MF .deps/libensembl_la-ensassembly.Tpo -c ensassembly.c -o libensembl_la-ensassembly.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensassemblymapper.lo -MD -MP -MF .deps/libensembl_la-ensassemblymapper.Tpo -c ensassemblymapper.c -o libensembl_la-ensassemblymapper.o >/dev/null 2>&1 In file included from ensmetainformation.c:33: In file included from ./ensmetainformation.h:36: In file included from ./ensdatabaseadaptor.h:36: In file included from ./ensdatabaseconnection.h:35: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ensgvgenotype.c:33: In file included from ./ensgvbaseadaptor.h:36: In file included from ./ensgvdata.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensdatabaseconnection.lo -MD -MP -MF .deps/libensembl_la-ensdatabaseconnection.Tpo -c ensdatabaseconnection.c -o libensembl_la-ensdatabaseconnection.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvallele.lo -MD -MP -MF .deps/libensembl_la-ensgvallele.Tpo -c ensgvallele.c -o libensembl_la-ensgvallele.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensregistry.lo -MD -MP -MF .deps/libensembl_la-ensregistry.Tpo -c ensregistry.c -fPIC -DPIC -o .libs/libensembl_la-ensregistry.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensqcsubmission.lo -MD -MP -MF .deps/libensembl_la-ensqcsubmission.Tpo -c ensqcsubmission.c -fPIC -DPIC -o .libs/libensembl_la-ensqcsubmission.o In file included from ensgvindividual.c:33: In file included from ./ensgvindividual.h:36: In file included from ./ensgvsample.h:36: In file included from ./ensgvdata.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensfeature.lo -MD -MP -MF .deps/libensembl_la-ensfeature.Tpo -c ensfeature.c -o libensembl_la-ensfeature.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enssimple.lo -MD -MP -MF .deps/libensembl_la-enssimple.Tpo -c enssimple.c -fPIC -DPIC -o .libs/libensembl_la-enssimple.o In file included from ensintron.c:33: In file included from ./ensintron.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvbaseadaptor.lo -MD -MP -MF .deps/libensembl_la-ensgvbaseadaptor.Tpo -c ensgvbaseadaptor.c -o libensembl_la-ensgvbaseadaptor.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensslice.lo -MD -MP -MF .deps/libensembl_la-ensslice.Tpo -c ensslice.c -fPIC -DPIC -o .libs/libensembl_la-ensslice.o In file included from enskaryotype.c:33: In file included from ./enskaryotype.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enssoftware.lo -MD -MP -MF .deps/libensembl_la-enssoftware.Tpo -c enssoftware.c -fPIC -DPIC -o .libs/libensembl_la-enssoftware.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensdensity.lo -MD -MP -MF .deps/libensembl_la-ensdensity.Tpo -c ensdensity.c -o libensembl_la-ensdensity.o >/dev/null 2>&1 In file included from ensgvpopulation.c:33: In file included from ./ensgvbaseadaptor.h:36: In file included from ./ensgvdata.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvattribute.lo -MD -MP -MF .deps/libensembl_la-ensgvattribute.Tpo -c ensgvattribute.c -o libensembl_la-ensgvattribute.o >/dev/null 2>&1 In file included from ensmapper.c:33: In file included from ./ensmapper.h:36: In file included from ./enscoordsystem.h:36: In file included from ./ensdatabaseadaptor.h:36: In file included from ./ensdatabaseconnection.h:35: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enstranslation.lo -MD -MP -MF .deps/libensembl_la-enstranslation.Tpo -c enstranslation.c -fPIC -DPIC -o .libs/libensembl_la-enstranslation.o In file included from ensgvvariation.c:33: In file included from ./ensgene.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ensprediction.c:33: In file included from ./ensprediction.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvsample.lo -MD -MP -MF .deps/libensembl_la-ensgvsample.Tpo -c ensgvsample.c -o libensembl_la-ensgvsample.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enssequenceedit.lo -MD -MP -MF .deps/libensembl_la-enssequenceedit.Tpo -c enssequenceedit.c -fPIC -DPIC -o .libs/libensembl_la-enssequenceedit.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enstable.lo -MD -MP -MF .deps/libensembl_la-enstable.Tpo -c enstable.c -fPIC -DPIC -o .libs/libensembl_la-enstable.o In file included from ensalign.c:33: In file included from ./ensalign.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensstorable.lo -MD -MP -MF .deps/libensembl_la-ensstorable.Tpo -c ensstorable.c -fPIC -DPIC -o .libs/libensembl_la-ensstorable.o In file included from ensontology.c:33: In file included from ./ensontology.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ensassemblyexception.c:33: In file included from ./ensassemblyexception.h:36: In file included from ./ensdatabaseadaptor.h:36: In file included from ./ensdatabaseconnection.h:35: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensmetainformation.lo -MD -MP -MF .deps/libensembl_la-ensmetainformation.Tpo -c ensmetainformation.c -o libensembl_la-ensmetainformation.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enstranscript.lo -MD -MP -MF .deps/libensembl_la-enstranscript.Tpo -c enstranscript.c -fPIC -DPIC -o .libs/libensembl_la-enstranscript.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensutility.lo -MD -MP -MF .deps/libensembl_la-ensutility.Tpo -c ensutility.c -fPIC -DPIC -o .libs/libensembl_la-ensutility.o In file included from ensmarker.c:33: In file included from ./ensmarker.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvgenotype.lo -MD -MP -MF .deps/libensembl_la-ensgvgenotype.Tpo -c ensgvgenotype.c -o libensembl_la-ensgvgenotype.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensintron.lo -MD -MP -MF .deps/libensembl_la-ensintron.Tpo -c ensintron.c -o libensembl_la-ensintron.o >/dev/null 2>&1 In file included from ensmiscellaneous.c:33: In file included from ./ensmiscellaneous.h:36: In file included from ./ensattribute.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ensqcdasfeature.c:33: In file included from ./ensqcdasfeature.h:36: In file included from ./ensqcalignment.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ensoperon.c:39: In file included from ./ensattribute.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enskaryotype.lo -MD -MP -MF .deps/libensembl_la-enskaryotype.Tpo -c enskaryotype.c -o libensembl_la-enskaryotype.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvindividual.lo -MD -MP -MF .deps/libensembl_la-ensgvindividual.Tpo -c ensgvindividual.c -o libensembl_la-ensgvindividual.o >/dev/null 2>&1 In file included from ensseqregion.c:33: In file included from ./ensattribute.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ensprotein.c:33: In file included from ./ensprotein.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvpopulation.lo -MD -MP -MF .deps/libensembl_la-ensgvpopulation.Tpo -c ensgvpopulation.c -o libensembl_la-ensgvpopulation.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensmapper.lo -MD -MP -MF .deps/libensembl_la-ensmapper.Tpo -c ensmapper.c -o libensembl_la-ensmapper.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensvariation.lo -MD -MP -MF .deps/libensembl_la-ensvariation.Tpo -c ensvariation.c -fPIC -DPIC -o .libs/libensembl_la-ensvariation.o In file included from enssequence.c:33: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ensqcvariation.c:33: In file included from ./ensqcvariation.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensprediction.lo -MD -MP -MF .deps/libensembl_la-ensprediction.Tpo -c ensprediction.c -o libensembl_la-ensprediction.o >/dev/null 2>&1 In file included from ensrepeat.c:33: In file included from ./ensrepeat.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensalign.lo -MD -MP -MF .deps/libensembl_la-ensalign.Tpo -c ensalign.c -o libensembl_la-ensalign.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvvariation.lo -MD -MP -MF .deps/libensembl_la-ensgvvariation.Tpo -c ensgvvariation.c -o libensembl_la-ensgvvariation.o >/dev/null 2>&1 In file included from enssoftware.c:33: In file included from ./enssoftware.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensontology.lo -MD -MP -MF .deps/libensembl_la-ensontology.Tpo -c ensontology.c -o libensembl_la-ensontology.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensassemblyexception.lo -MD -MP -MF .deps/libensembl_la-ensassemblyexception.Tpo -c ensassemblyexception.c -o libensembl_la-ensassemblyexception.o >/dev/null 2>&1 mv -f .deps/libensembl_la-ensanalysis.Tpo .deps/libensembl_la-ensanalysis.Plo In file included from ensqcalignment.c:33: In file included from ./ensqcalignment.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libensembl_la-ensdatabaseadaptor.Tpo .deps/libensembl_la-ensdatabaseadaptor.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensmiscellaneous.lo -MD -MP -MF .deps/libensembl_la-ensmiscellaneous.Tpo -c ensmiscellaneous.c -o libensembl_la-ensmiscellaneous.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensoperon.lo -MD -MP -MF .deps/libensembl_la-ensoperon.Tpo -c ensoperon.c -o libensembl_la-ensoperon.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensmarker.lo -MD -MP -MF .deps/libensembl_la-ensmarker.Tpo -c ensmarker.c -o libensembl_la-ensmarker.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensseqregion.lo -MD -MP -MF .deps/libensembl_la-ensseqregion.Tpo -c ensseqregion.c -o libensembl_la-ensseqregion.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensqcdasfeature.lo -MD -MP -MF .deps/libensembl_la-ensqcdasfeature.Tpo -c ensqcdasfeature.c -o libensembl_la-ensqcdasfeature.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensprotein.lo -MD -MP -MF .deps/libensembl_la-ensprotein.Tpo -c ensprotein.c -o libensembl_la-ensprotein.o >/dev/null 2>&1 In file included from ensgvdatabaseadaptor.c:33: In file included from ./ensgvdatabaseadaptor.h:36: In file included from ./ensgvdata.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enssequence.lo -MD -MP -MF .deps/libensembl_la-enssequence.Tpo -c enssequence.c -o libensembl_la-enssequence.o >/dev/null 2>&1 In file included from enssimple.c:33: In file included from ./enssimple.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensqcvariation.lo -MD -MP -MF .deps/libensembl_la-ensqcvariation.Tpo -c ensqcvariation.c -o libensembl_la-ensqcvariation.o >/dev/null 2>&1 In file included from ensgene.c:33: In file included from ./ensattribute.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ensregistry.c:33: In file included from ./ensregistry.h:36: In file included from ./ensembl.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ensstorable.c:33: In file included from ./ensstorable.h:36: In file included from ./ensdatabaseconnection.h:35: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensrepeat.lo -MD -MP -MF .deps/libensembl_la-ensrepeat.Tpo -c ensrepeat.c -o libensembl_la-ensrepeat.o >/dev/null 2>&1 In file included from enstable.c:33: In file included from ./enstable.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libensembl_la-ensassembly.Tpo .deps/libensembl_la-ensassembly.Plo mv -f .deps/libensembl_la-ensgvbaseadaptor.Tpo .deps/libensembl_la-ensgvbaseadaptor.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enssoftware.lo -MD -MP -MF .deps/libensembl_la-enssoftware.Tpo -c enssoftware.c -o libensembl_la-enssoftware.o >/dev/null 2>&1 mv -f .deps/libensembl_la-ensdatabaseconnection.Tpo .deps/libensembl_la-ensdatabaseconnection.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensqcalignment.lo -MD -MP -MF .deps/libensembl_la-ensqcalignment.Tpo -c ensqcalignment.c -o libensembl_la-ensqcalignment.o >/dev/null 2>&1 mv -f .deps/libensembl_la-ensditag.Tpo .deps/libensembl_la-ensditag.Plo In file included from enssequenceedit.c:33: In file included from ./enssequenceedit.h:36: In file included from ./ensattribute.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from enstranscript.c:33: In file included from ./ensalign.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ensqc.c:33: In file included from ./ensqc.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvdatabaseadaptor.lo -MD -MP -MF .deps/libensembl_la-ensgvdatabaseadaptor.Tpo -c ensgvdatabaseadaptor.c -o libensembl_la-ensgvdatabaseadaptor.o >/dev/null 2>&1 mv -f .deps/libensembl_la-ensgvallele.Tpo .deps/libensembl_la-ensgvallele.Plo In file included from ensprojectionsegment.c:33: In file included from ./ensprojectionsegment.h:36: In file included from ./ensslice.h:36: In file included from ./ensseqregion.h:36: In file included from ./enscoordsystem.h:36: In file included from ./ensdatabaseadaptor.h:36: In file included from ./ensdatabaseconnection.h:35: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ensexternaldatabase.c:33: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enssimple.lo -MD -MP -MF .deps/libensembl_la-enssimple.Tpo -c enssimple.c -o libensembl_la-enssimple.o >/dev/null 2>&1 In file included from ensutility.c:33: In file included from ./ensregistry.h:36: In file included from ./ensembl.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensregistry.lo -MD -MP -MF .deps/libensembl_la-ensregistry.Tpo -c ensregistry.c -o libensembl_la-ensregistry.o >/dev/null 2>&1 In file included from ensvariation.c:33: In file included from ./ensgvbaseadaptor.h:36: In file included from ./ensgvdata.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgene.lo -MD -MP -MF .deps/libensembl_la-ensgene.Tpo -c ensgene.c -o libensembl_la-ensgene.o >/dev/null 2>&1 In file included from ensgvsynonym.c:33: In file included from ./ensgvsource.h:36: In file included from ./ensgvdata.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensstorable.lo -MD -MP -MF .deps/libensembl_la-ensstorable.Tpo -c ensstorable.c -o libensembl_la-ensstorable.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enstable.lo -MD -MP -MF .deps/libensembl_la-enstable.Tpo -c enstable.c -o libensembl_la-enstable.o >/dev/null 2>&1 mv -f .deps/libensembl_la-ensdensity.Tpo .deps/libensembl_la-ensdensity.Plo mv -f .deps/libensembl_la-ensgvattribute.Tpo .deps/libensembl_la-ensgvattribute.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enssequenceedit.lo -MD -MP -MF .deps/libensembl_la-enssequenceedit.Tpo -c enssequenceedit.c -o libensembl_la-enssequenceedit.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enstranscript.lo -MD -MP -MF .deps/libensembl_la-enstranscript.Tpo -c enstranscript.c -o libensembl_la-enstranscript.o >/dev/null 2>&1 In file included from ensexon.c:33: In file included from ./ensalign.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libensembl_la-ensassemblymapper.Tpo .deps/libensembl_la-ensassemblymapper.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensprojectionsegment.lo -MD -MP -MF .deps/libensembl_la-ensprojectionsegment.Tpo -c ensprojectionsegment.c -o libensembl_la-ensprojectionsegment.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensqc.lo -MD -MP -MF .deps/libensembl_la-ensqc.Tpo -c ensqc.c -o libensembl_la-ensqc.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensexternaldatabase.lo -MD -MP -MF .deps/libensembl_la-ensexternaldatabase.Tpo -c ensexternaldatabase.c -o libensembl_la-ensexternaldatabase.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensvariation.lo -MD -MP -MF .deps/libensembl_la-ensvariation.Tpo -c ensvariation.c -o libensembl_la-ensvariation.o >/dev/null 2>&1 mv -f .deps/libensembl_la-enskaryotype.Tpo .deps/libensembl_la-enskaryotype.Plo mv -f .deps/libensembl_la-ensgvindividual.Tpo .deps/libensembl_la-ensgvindividual.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensutility.lo -MD -MP -MF .deps/libensembl_la-ensutility.Tpo -c ensutility.c -o libensembl_la-ensutility.o >/dev/null 2>&1 mv -f .deps/libensembl_la-ensmapper.Tpo .deps/libensembl_la-ensmapper.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvsynonym.lo -MD -MP -MF .deps/libensembl_la-ensgvsynonym.Tpo -c ensgvsynonym.c -o libensembl_la-ensgvsynonym.o >/dev/null 2>&1 mv -f .deps/libensembl_la-ensgvpopulation.Tpo .deps/libensembl_la-ensgvpopulation.Plo mv -f .deps/libensembl_la-ensontology.Tpo .deps/libensembl_la-ensontology.Plo mv -f .deps/libensembl_la-ensalign.Tpo .deps/libensembl_la-ensalign.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensexon.lo -MD -MP -MF .deps/libensembl_la-ensexon.Tpo -c ensexon.c -o libensembl_la-ensexon.o >/dev/null 2>&1 mv -f .deps/libensembl_la-ensoperon.Tpo .deps/libensembl_la-ensoperon.Plo In file included from ensdatabaseentry.c:33: In file included from ./ensdatabaseentry.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libensembl_la-enssequence.Tpo .deps/libensembl_la-enssequence.Plo mv -f .deps/libensembl_la-ensmarker.Tpo .deps/libensembl_la-ensmarker.Plo mv -f .deps/libensembl_la-ensqcvariation.Tpo .deps/libensembl_la-ensqcvariation.Plo mv -f .deps/libensembl_la-enssoftware.Tpo .deps/libensembl_la-enssoftware.Plo mv -f .deps/libensembl_la-ensgvsample.Tpo .deps/libensembl_la-ensgvsample.Plo mv -f .deps/libensembl_la-ensrepeat.Tpo .deps/libensembl_la-ensrepeat.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensdatabaseentry.lo -MD -MP -MF .deps/libensembl_la-ensdatabaseentry.Tpo -c ensdatabaseentry.c -o libensembl_la-ensdatabaseentry.o >/dev/null 2>&1 mv -f .deps/libensembl_la-ensgene.Tpo .deps/libensembl_la-ensgene.Plo mv -f .deps/libensembl_la-enssimple.Tpo .deps/libensembl_la-enssimple.Plo mv -f .deps/libensembl_la-ensstorable.Tpo .deps/libensembl_la-ensstorable.Plo In file included from ensqcdatabase.c:33: In file included from ./ensqcdatabase.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libensembl_la-enstable.Tpo .deps/libensembl_la-enstable.Plo mv -f .deps/libensembl_la-enssequenceedit.Tpo .deps/libensembl_la-enssequenceedit.Plo In file included from ensgvsource.c:33: In file included from ./ensgvsource.h:36: In file included from ./ensgvdata.h:36: In file included from ./ensfeature.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libensembl_la-ensbaseadaptor.Tpo .deps/libensembl_la-ensbaseadaptor.Plo mv -f .deps/libensembl_la-ensvariation.Tpo .deps/libensembl_la-ensvariation.Plo mv -f .deps/libensembl_la-ensprojectionsegment.Tpo .deps/libensembl_la-ensprojectionsegment.Plo mv -f .deps/libensembl_la-enscoordsystem.Tpo .deps/libensembl_la-enscoordsystem.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensqcdatabase.lo -MD -MP -MF .deps/libensembl_la-ensqcdatabase.Tpo -c ensqcdatabase.c -o libensembl_la-ensqcdatabase.o >/dev/null 2>&1 mv -f .deps/libensembl_la-ensutility.Tpo .deps/libensembl_la-ensutility.Plo mv -f .deps/libensembl_la-ensmetainformation.Tpo .deps/libensembl_la-ensmetainformation.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensgvsource.lo -MD -MP -MF .deps/libensembl_la-ensgvsource.Tpo -c ensgvsource.c -o libensembl_la-ensgvsource.o >/dev/null 2>&1 mv -f .deps/libensembl_la-ensregistry.Tpo .deps/libensembl_la-ensregistry.Plo mv -f .deps/libensembl_la-ensexon.Tpo .deps/libensembl_la-ensexon.Plo mv -f .deps/libensembl_la-ensprotein.Tpo .deps/libensembl_la-ensprotein.Plo mv -f .deps/libensembl_la-ensgvgenotype.Tpo .deps/libensembl_la-ensgvgenotype.Plo mv -f .deps/libensembl_la-ensdatabaseentry.Tpo .deps/libensembl_la-ensdatabaseentry.Plo mv -f .deps/libensembl_la-ensseqregion.Tpo .deps/libensembl_la-ensseqregion.Plo mv -f .deps/libensembl_la-ensqcdatabase.Tpo .deps/libensembl_la-ensqcdatabase.Plo mv -f .deps/libensembl_la-ensgvsynonym.Tpo .deps/libensembl_la-ensgvsynonym.Plo mv -f .deps/libensembl_la-ensgvsource.Tpo .deps/libensembl_la-ensgvsource.Plo In file included from ensqcsubmission.c:33: In file included from ./ensqcsubmission.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libensembl_la-enscache.Tpo .deps/libensembl_la-enscache.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensqcsubmission.lo -MD -MP -MF .deps/libensembl_la-ensqcsubmission.Tpo -c ensqcsubmission.c -o libensembl_la-ensqcsubmission.o >/dev/null 2>&1 In file included from enstranslation.c:33: In file included from ./ensdatabaseentry.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libensembl_la-ensqcalignment.Tpo .deps/libensembl_la-ensqcalignment.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-enstranslation.lo -MD -MP -MF .deps/libensembl_la-enstranslation.Tpo -c enstranslation.c -o libensembl_la-enstranslation.o >/dev/null 2>&1 mv -f .deps/libensembl_la-ensprediction.Tpo .deps/libensembl_la-ensprediction.Plo In file included from ensqcsequence.c:33: In file included from ./ensqcsequence.h:36: In file included from ./ensqcdatabase.h:36: In file included from ./ensanalysis.h:36: In file included from ./ensbaseadaptor.h:36: In file included from ./ensassemblymapper.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensqcsequence.lo -MD -MP -MF .deps/libensembl_la-ensqcsequence.Tpo -c ensqcsequence.c -o libensembl_la-ensqcsequence.o >/dev/null 2>&1 mv -f .deps/libensembl_la-ensgvvariation.Tpo .deps/libensembl_la-ensgvvariation.Plo mv -f .deps/libensembl_la-ensmiscellaneous.Tpo .deps/libensembl_la-ensmiscellaneous.Plo mv -f .deps/libensembl_la-enstranslation.Tpo .deps/libensembl_la-enstranslation.Plo mv -f .deps/libensembl_la-ensgvdatabaseadaptor.Tpo .deps/libensembl_la-ensgvdatabaseadaptor.Plo mv -f .deps/libensembl_la-ensqcsequence.Tpo .deps/libensembl_la-ensqcsequence.Plo mv -f .deps/libensembl_la-ensintron.Tpo .deps/libensembl_la-ensintron.Plo mv -f .deps/libensembl_la-ensqc.Tpo .deps/libensembl_la-ensqc.Plo mv -f .deps/libensembl_la-ensexternaldatabase.Tpo .deps/libensembl_la-ensexternaldatabase.Plo mv -f .deps/libensembl_la-ensfeature.Tpo .deps/libensembl_la-ensfeature.Plo mv -f .deps/libensembl_la-ensassemblyexception.Tpo .deps/libensembl_la-ensassemblyexception.Plo In file included from ensslice.c:33: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensslice.lo -MD -MP -MF .deps/libensembl_la-ensslice.Tpo -c ensslice.c -o libensembl_la-ensslice.o >/dev/null 2>&1 mv -f .deps/libensembl_la-ensqcdasfeature.Tpo .deps/libensembl_la-ensqcdasfeature.Plo mv -f .deps/libensembl_la-ensslice.Tpo .deps/libensembl_la-ensslice.Plo In file included from ensattribute.c:33: In file included from ./ensattribute.h:36: In file included from ./ensdata.h:36: In file included from ./enscache.h:36: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensattribute.lo -MD -MP -MF .deps/libensembl_la-ensattribute.Tpo -c ensattribute.c -o libensembl_la-ensattribute.o >/dev/null 2>&1 In file included from ensmetacoordinate.c:33: In file included from ./ensmetacoordinate.h:36: In file included from ./enscoordsystem.h:36: In file included from ./ensdatabaseadaptor.h:36: In file included from ./ensdatabaseconnection.h:35: In file included from ../../ajax/core/ajax.h:33: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libensembl_la-ensmetacoordinate.lo -MD -MP -MF .deps/libensembl_la-ensmetacoordinate.Tpo -c ensmetacoordinate.c -o libensembl_la-ensmetacoordinate.o >/dev/null 2>&1 mv -f .deps/libensembl_la-ensattribute.Tpo .deps/libensembl_la-ensattribute.Plo mv -f .deps/libensembl_la-ensqcsubmission.Tpo .deps/libensembl_la-ensqcsubmission.Plo mv -f .deps/libensembl_la-enstranscript.Tpo .deps/libensembl_la-enstranscript.Plo mv -f .deps/libensembl_la-ensmetacoordinate.Tpo .deps/libensembl_la-ensmetacoordinate.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -version-info 6:5:0 -L/usr/local/lib -L/usr/local/lib -o libensembl.la -rpath /usr/local/emboss/lib libensembl_la-ensalign.lo libensembl_la-ensanalysis.lo libensembl_la-ensassembly.lo libensembl_la-ensassemblyexception.lo libensembl_la-ensassemblymapper.lo libensembl_la-ensattribute.lo libensembl_la-ensbaseadaptor.lo libensembl_la-enscache.lo libensembl_la-enscoordsystem.lo libensembl_la-ensdatabaseadaptor.lo libensembl_la-ensdatabaseconnection.lo libensembl_la-ensdatabaseentry.lo libensembl_la-ensdensity.lo libensembl_la-ensditag.lo libensembl_la-ensexon.lo libensembl_la-ensexternaldatabase.lo libensembl_la-ensfeature.lo libensembl_la-ensgene.lo libensembl_la-ensgvallele.lo libensembl_la-ensgvattribute.lo libensembl_la-ensgvbaseadaptor.lo libensembl_la-ensgvdatabaseadaptor.lo libensembl_la-ensgvgenotype.lo libensembl_la-ensgvindividual.lo libensembl_la-ensgvpopulation.lo libensembl_la-ensgvsample.lo libensembl_la-ensgvsource.lo libensembl_la-ensgvsynonym.lo libensembl_la-ensgvvariation.lo libensembl_la-ensintron.lo libensembl_la-enskaryotype.lo libensembl_la-ensmapper.lo libensembl_la-ensmarker.lo libensembl_la-ensmetacoordinate.lo libensembl_la-ensmetainformation.lo libensembl_la-ensmiscellaneous.lo libensembl_la-ensontology.lo libensembl_la-ensoperon.lo libensembl_la-ensprediction.lo libensembl_la-ensprojectionsegment.lo libensembl_la-ensprotein.lo libensembl_la-ensqc.lo libensembl_la-ensqcalignment.lo libensembl_la-ensqcdasfeature.lo libensembl_la-ensqcdatabase.lo libensembl_la-ensqcsequence.lo libensembl_la-ensqcsubmission.lo libensembl_la-ensqcvariation.lo libensembl_la-ensregistry.lo libensembl_la-ensrepeat.lo libensembl_la-ensseqregion.lo libensembl_la-enssequence.lo libensembl_la-enssequenceedit.lo libensembl_la-enssimple.lo libensembl_la-ensslice.lo libensembl_la-enssoftware.lo libensembl_la-ensstorable.lo libensembl_la-enstable.lo libensembl_la-enstranscript.lo libensembl_la-enstranslation.lo libensembl_la-ensutility.lo libensembl_la-ensvariation.lo -lm -lgd -lpng -lz -lm libtool: link: cc -shared -fPIC -DPIC .libs/libensembl_la-ensalign.o .libs/libensembl_la-ensanalysis.o .libs/libensembl_la-ensassembly.o .libs/libensembl_la-ensassemblyexception.o .libs/libensembl_la-ensassemblymapper.o .libs/libensembl_la-ensattribute.o .libs/libensembl_la-ensbaseadaptor.o .libs/libensembl_la-enscache.o .libs/libensembl_la-enscoordsystem.o .libs/libensembl_la-ensdatabaseadaptor.o .libs/libensembl_la-ensdatabaseconnection.o .libs/libensembl_la-ensdatabaseentry.o .libs/libensembl_la-ensdensity.o .libs/libensembl_la-ensditag.o .libs/libensembl_la-ensexon.o .libs/libensembl_la-ensexternaldatabase.o .libs/libensembl_la-ensfeature.o .libs/libensembl_la-ensgene.o .libs/libensembl_la-ensgvallele.o .libs/libensembl_la-ensgvattribute.o .libs/libensembl_la-ensgvbaseadaptor.o .libs/libensembl_la-ensgvdatabaseadaptor.o .libs/libensembl_la-ensgvgenotype.o .libs/libensembl_la-ensgvindividual.o .libs/libensembl_la-ensgvpopulation.o .libs/libensembl_la-ensgvsample.o .libs/libensembl_la-ensgvsource.o .libs/libensembl_la-ensgvsynonym.o .libs/libensembl_la-ensgvvariation.o .libs/libensembl_la-ensintron.o .libs/libensembl_la-enskaryotype.o .libs/libensembl_la-ensmapper.o .libs/libensembl_la-ensmarker.o .libs/libensembl_la-ensmetacoordinate.o .libs/libensembl_la-ensmetainformation.o .libs/libensembl_la-ensmiscellaneous.o .libs/libensembl_la-ensontology.o .libs/libensembl_la-ensoperon.o .libs/libensembl_la-ensprediction.o .libs/libensembl_la-ensprojectionsegment.o .libs/libensembl_la-ensprotein.o .libs/libensembl_la-ensqc.o .libs/libensembl_la-ensqcalignment.o .libs/libensembl_la-ensqcdasfeature.o .libs/libensembl_la-ensqcdatabase.o .libs/libensembl_la-ensqcsequence.o .libs/libensembl_la-ensqcsubmission.o .libs/libensembl_la-ensqcvariation.o .libs/libensembl_la-ensregistry.o .libs/libensembl_la-ensrepeat.o .libs/libensembl_la-ensseqregion.o .libs/libensembl_la-enssequence.o .libs/libensembl_la-enssequenceedit.o .libs/libensembl_la-enssimple.o .libs/libensembl_la-ensslice.o .libs/libensembl_la-enssoftware.o .libs/libensembl_la-ensstorable.o .libs/libensembl_la-enstable.o .libs/libensembl_la-enstranscript.o .libs/libensembl_la-enstranslation.o .libs/libensembl_la-ensutility.o .libs/libensembl_la-ensvariation.o -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib /usr/local/lib/libgd.so -lpng -lz -lm -O2 -fstack-protector-strong -O2 -Wl,-soname -Wl,libensembl.so.6 -o .libs/libensembl.so.6.0.5 libtool: link: (cd ".libs" && rm -f "libensembl.so.6" && ln -s "libensembl.so.6.0.5" "libensembl.so.6") libtool: link: (cd ".libs" && rm -f "libensembl.so" && ln -s "libensembl.so.6.0.5" "libensembl.so") libtool: link: ar cru .libs/libensembl.a libensembl_la-ensalign.o libensembl_la-ensanalysis.o libensembl_la-ensassembly.o libensembl_la-ensassemblyexception.o libensembl_la-ensassemblymapper.o libensembl_la-ensattribute.o libensembl_la-ensbaseadaptor.o libensembl_la-enscache.o libensembl_la-enscoordsystem.o libensembl_la-ensdatabaseadaptor.o libensembl_la-ensdatabaseconnection.o libensembl_la-ensdatabaseentry.o libensembl_la-ensdensity.o libensembl_la-ensditag.o libensembl_la-ensexon.o libensembl_la-ensexternaldatabase.o libensembl_la-ensfeature.o libensembl_la-ensgene.o libensembl_la-ensgvallele.o libensembl_la-ensgvattribute.o libensembl_la-ensgvbaseadaptor.o libensembl_la-ensgvdatabaseadaptor.o libensembl_la-ensgvgenotype.o libensembl_la-ensgvindividual.o libensembl_la-ensgvpopulation.o libensembl_la-ensgvsample.o libensembl_la-ensgvsource.o libensembl_la-ensgvsynonym.o libensembl_la-ensgvvariation.o libensembl_la-ensintron.o libensembl_la-enskaryotype.o libensembl_la-ensmapper.o libensembl_la-ensmarker.o libensembl_la-ensmetacoordinate.o libensembl_la-ensmetainformation.o libensembl_la-ensmiscellaneous.o libensembl_la-ensontology.o libensembl_la-ensoperon.o libensembl_la-ensprediction.o libensembl_la-ensprojectionsegment.o libensembl_la-ensprotein.o libensembl_la-ensqc.o libensembl_la-ensqcalignment.o libensembl_la-ensqcdasfeature.o libensembl_la-ensqcdatabase.o libensembl_la-ensqcsequence.o libensembl_la-ensqcsubmission.o libensembl_la-ensqcvariation.o libensembl_la-ensregistry.o libensembl_la-ensrepeat.o libensembl_la-ensseqregion.o libensembl_la-enssequence.o libensembl_la-enssequenceedit.o libensembl_la-enssimple.o libensembl_la-ensslice.o libensembl_la-enssoftware.o libensembl_la-ensstorable.o libensembl_la-enstable.o libensembl_la-enstranscript.o libensembl_la-enstranslation.o libensembl_la-ensutility.o libensembl_la-ensvariation.o libtool: link: ranlib .libs/libensembl.a libtool: link: ( cd ".libs" && rm -f "libensembl.la" && ln -s "../libensembl.la" "libensembl.la" ) gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/ensembl' Making all in ajaxdb gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/ajaxdb' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajassemdb.lo -MD -MP -MF .deps/libajaxdb_la-ajassemdb.Tpo -c -o libajaxdb_la-ajassemdb.lo `test -f 'ajassemdb.c' || echo './'`ajassemdb.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajdas.lo -MD -MP -MF .deps/libajaxdb_la-ajdas.Tpo -c -o libajaxdb_la-ajdas.lo `test -f 'ajdas.c' || echo './'`ajdas.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajfeatdb.lo -MD -MP -MF .deps/libajaxdb_la-ajfeatdb.Tpo -c -o libajaxdb_la-ajfeatdb.lo `test -f 'ajfeatdb.c' || echo './'`ajfeatdb.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajmart.lo -MD -MP -MF .deps/libajaxdb_la-ajmart.Tpo -c -o libajaxdb_la-ajmart.lo `test -f 'ajmart.c' || echo './'`ajmart.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajobodb.lo -MD -MP -MF .deps/libajaxdb_la-ajobodb.Tpo -c -o libajaxdb_la-ajobodb.lo `test -f 'ajobodb.c' || echo './'`ajobodb.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajrefseqdb.lo -MD -MP -MF .deps/libajaxdb_la-ajrefseqdb.Tpo -c -o libajaxdb_la-ajrefseqdb.lo `test -f 'ajrefseqdb.c' || echo './'`ajrefseqdb.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajresourcedb.lo -MD -MP -MF .deps/libajaxdb_la-ajresourcedb.Tpo -c -o libajaxdb_la-ajresourcedb.lo `test -f 'ajresourcedb.c' || echo './'`ajresourcedb.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajseqdb.lo -MD -MP -MF .deps/libajaxdb_la-ajseqdb.Tpo -c -o libajaxdb_la-ajseqdb.lo `test -f 'ajseqdb.c' || echo './'`ajseqdb.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajsoap.lo -MD -MP -MF .deps/libajaxdb_la-ajsoap.Tpo -c -o libajaxdb_la-ajsoap.lo `test -f 'ajsoap.c' || echo './'`ajsoap.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajtaxdb.lo -MD -MP -MF .deps/libajaxdb_la-ajtaxdb.Tpo -c -o libajaxdb_la-ajtaxdb.lo `test -f 'ajtaxdb.c' || echo './'`ajtaxdb.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajtextdb.lo -MD -MP -MF .deps/libajaxdb_la-ajtextdb.Tpo -c -o libajaxdb_la-ajtextdb.lo `test -f 'ajtextdb.c' || echo './'`ajtextdb.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajurldb.lo -MD -MP -MF .deps/libajaxdb_la-ajurldb.Tpo -c -o libajaxdb_la-ajurldb.lo `test -f 'ajurldb.c' || echo './'`ajurldb.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajvardb.lo -MD -MP -MF .deps/libajaxdb_la-ajvardb.Tpo -c -o libajaxdb_la-ajvardb.lo `test -f 'ajvardb.c' || echo './'`ajvardb.c /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajxmldb.lo -MD -MP -MF .deps/libajaxdb_la-ajxmldb.Tpo -c -o libajaxdb_la-ajxmldb.lo `test -f 'ajxmldb.c' || echo './'`ajxmldb.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajdas.lo -MD -MP -MF .deps/libajaxdb_la-ajdas.Tpo -c ajdas.c -fPIC -DPIC -o .libs/libajaxdb_la-ajdas.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajmart.lo -MD -MP -MF .deps/libajaxdb_la-ajmart.Tpo -c ajmart.c -fPIC -DPIC -o .libs/libajaxdb_la-ajmart.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajobodb.lo -MD -MP -MF .deps/libajaxdb_la-ajobodb.Tpo -c ajobodb.c -fPIC -DPIC -o .libs/libajaxdb_la-ajobodb.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajassemdb.lo -MD -MP -MF .deps/libajaxdb_la-ajassemdb.Tpo -c ajassemdb.c -fPIC -DPIC -o .libs/libajaxdb_la-ajassemdb.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajresourcedb.lo -MD -MP -MF .deps/libajaxdb_la-ajresourcedb.Tpo -c ajresourcedb.c -fPIC -DPIC -o .libs/libajaxdb_la-ajresourcedb.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajrefseqdb.lo -MD -MP -MF .deps/libajaxdb_la-ajrefseqdb.Tpo -c ajrefseqdb.c -fPIC -DPIC -o .libs/libajaxdb_la-ajrefseqdb.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajseqdb.lo -MD -MP -MF .deps/libajaxdb_la-ajseqdb.Tpo -c ajseqdb.c -fPIC -DPIC -o .libs/libajaxdb_la-ajseqdb.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajsoap.lo -MD -MP -MF .deps/libajaxdb_la-ajsoap.Tpo -c ajsoap.c -fPIC -DPIC -o .libs/libajaxdb_la-ajsoap.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajtextdb.lo -MD -MP -MF .deps/libajaxdb_la-ajtextdb.Tpo -c ajtextdb.c -fPIC -DPIC -o .libs/libajaxdb_la-ajtextdb.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajtaxdb.lo -MD -MP -MF .deps/libajaxdb_la-ajtaxdb.Tpo -c ajtaxdb.c -fPIC -DPIC -o .libs/libajaxdb_la-ajtaxdb.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajvardb.lo -MD -MP -MF .deps/libajaxdb_la-ajvardb.Tpo -c ajvardb.c -fPIC -DPIC -o .libs/libajaxdb_la-ajvardb.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajfeatdb.lo -MD -MP -MF .deps/libajaxdb_la-ajfeatdb.Tpo -c ajfeatdb.c -fPIC -DPIC -o .libs/libajaxdb_la-ajfeatdb.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajxmldb.lo -MD -MP -MF .deps/libajaxdb_la-ajxmldb.Tpo -c ajxmldb.c -fPIC -DPIC -o .libs/libajaxdb_la-ajxmldb.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajurldb.lo -MD -MP -MF .deps/libajaxdb_la-ajurldb.Tpo -c ajurldb.c -fPIC -DPIC -o .libs/libajaxdb_la-ajurldb.o In file included from ajassemdb.c:31: In file included from ../../ajax/core/ajlib.h:34: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajsoap.c:27: In file included from ./ajsoap.h:34: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajmart.c:31: In file included from ./ajmart.h:38: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajurldb.c:31: In file included from ../../ajax/core/ajlib.h:34: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajtaxdb.c:31: In file included from ../../ajax/core/ajlib.h:34: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajtextdb.c:31: In file included from ../../ajax/core/ajlib.h:34: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajsoap.lo -MD -MP -MF .deps/libajaxdb_la-ajsoap.Tpo -c ajsoap.c -o libajaxdb_la-ajsoap.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajassemdb.lo -MD -MP -MF .deps/libajaxdb_la-ajassemdb.Tpo -c ajassemdb.c -o libajaxdb_la-ajassemdb.o >/dev/null 2>&1 In file included from ajfeatdb.c:31: In file included from ../../ajax/core/ajlib.h:34: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajmart.lo -MD -MP -MF .deps/libajaxdb_la-ajmart.Tpo -c ajmart.c -o libajaxdb_la-ajmart.o >/dev/null 2>&1 In file included from ajseqdb.c:51: In file included from ./ajdas.h:36: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajtextdb.lo -MD -MP -MF .deps/libajaxdb_la-ajtextdb.Tpo -c ajtextdb.c -o libajaxdb_la-ajtextdb.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajurldb.lo -MD -MP -MF .deps/libajaxdb_la-ajurldb.Tpo -c ajurldb.c -o libajaxdb_la-ajurldb.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajtaxdb.lo -MD -MP -MF .deps/libajaxdb_la-ajtaxdb.Tpo -c ajtaxdb.c -o libajaxdb_la-ajtaxdb.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajfeatdb.lo -MD -MP -MF .deps/libajaxdb_la-ajfeatdb.Tpo -c ajfeatdb.c -o libajaxdb_la-ajfeatdb.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajseqdb.lo -MD -MP -MF .deps/libajaxdb_la-ajseqdb.Tpo -c ajseqdb.c -o libajaxdb_la-ajseqdb.o >/dev/null 2>&1 mv -f .deps/libajaxdb_la-ajsoap.Tpo .deps/libajaxdb_la-ajsoap.Plo mv -f .deps/libajaxdb_la-ajassemdb.Tpo .deps/libajaxdb_la-ajassemdb.Plo mv -f .deps/libajaxdb_la-ajurldb.Tpo .deps/libajaxdb_la-ajurldb.Plo mv -f .deps/libajaxdb_la-ajtaxdb.Tpo .deps/libajaxdb_la-ajtaxdb.Plo mv -f .deps/libajaxdb_la-ajtextdb.Tpo .deps/libajaxdb_la-ajtextdb.Plo mv -f .deps/libajaxdb_la-ajfeatdb.Tpo .deps/libajaxdb_la-ajfeatdb.Plo In file included from ajdas.c:26: In file included from ./ajdas.h:36: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libajaxdb_la-ajseqdb.Tpo .deps/libajaxdb_la-ajseqdb.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajdas.lo -MD -MP -MF .deps/libajaxdb_la-ajdas.Tpo -c ajdas.c -o libajaxdb_la-ajdas.o >/dev/null 2>&1 In file included from ajvardb.c:31: In file included from ../../ajax/core/ajlib.h:34: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajvardb.lo -MD -MP -MF .deps/libajaxdb_la-ajvardb.Tpo -c ajvardb.c -o libajaxdb_la-ajvardb.o >/dev/null 2>&1 mv -f .deps/libajaxdb_la-ajmart.Tpo .deps/libajaxdb_la-ajmart.Plo mv -f .deps/libajaxdb_la-ajdas.Tpo .deps/libajaxdb_la-ajdas.Plo In file included from ajxmldb.c:31: In file included from ../../ajax/core/ajlib.h:34: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ajrefseqdb.c:31: In file included from ./ajrefseqdb.h:40: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajxmldb.lo -MD -MP -MF .deps/libajaxdb_la-ajxmldb.Tpo -c ajxmldb.c -o libajaxdb_la-ajxmldb.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajrefseqdb.lo -MD -MP -MF .deps/libajaxdb_la-ajrefseqdb.Tpo -c ajrefseqdb.c -o libajaxdb_la-ajrefseqdb.o >/dev/null 2>&1 mv -f .deps/libajaxdb_la-ajxmldb.Tpo .deps/libajaxdb_la-ajxmldb.Plo mv -f .deps/libajaxdb_la-ajrefseqdb.Tpo .deps/libajaxdb_la-ajrefseqdb.Plo In file included from ajobodb.c:31: In file included from ../../ajax/core/ajlib.h:34: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajobodb.lo -MD -MP -MF .deps/libajaxdb_la-ajobodb.Tpo -c ajobodb.c -o libajaxdb_la-ajobodb.o >/dev/null 2>&1 In file included from ajresourcedb.c:31: In file included from ../../ajax/core/ajlib.h:34: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libajaxdb_la-ajvardb.Tpo .deps/libajaxdb_la-ajvardb.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ensembl -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libajaxdb_la-ajresourcedb.lo -MD -MP -MF .deps/libajaxdb_la-ajresourcedb.Tpo -c ajresourcedb.c -o libajaxdb_la-ajresourcedb.o >/dev/null 2>&1 mv -f .deps/libajaxdb_la-ajobodb.Tpo .deps/libajaxdb_la-ajobodb.Plo mv -f .deps/libajaxdb_la-ajresourcedb.Tpo .deps/libajaxdb_la-ajresourcedb.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -version-info 6:5:0 -L/usr/local/lib -L/usr/local/lib -o libajaxdb.la -rpath /usr/local/emboss/lib libajaxdb_la-ajassemdb.lo libajaxdb_la-ajdas.lo libajaxdb_la-ajfeatdb.lo libajaxdb_la-ajmart.lo libajaxdb_la-ajobodb.lo libajaxdb_la-ajrefseqdb.lo libajaxdb_la-ajresourcedb.lo libajaxdb_la-ajseqdb.lo libajaxdb_la-ajsoap.lo libajaxdb_la-ajtaxdb.lo libajaxdb_la-ajtextdb.lo libajaxdb_la-ajurldb.lo libajaxdb_la-ajvardb.lo libajaxdb_la-ajxmldb.lo -lm -lgd -lpng -lz -lm libtool: link: cc -shared -fPIC -DPIC .libs/libajaxdb_la-ajassemdb.o .libs/libajaxdb_la-ajdas.o .libs/libajaxdb_la-ajfeatdb.o .libs/libajaxdb_la-ajmart.o .libs/libajaxdb_la-ajobodb.o .libs/libajaxdb_la-ajrefseqdb.o .libs/libajaxdb_la-ajresourcedb.o .libs/libajaxdb_la-ajseqdb.o .libs/libajaxdb_la-ajsoap.o .libs/libajaxdb_la-ajtaxdb.o .libs/libajaxdb_la-ajtextdb.o .libs/libajaxdb_la-ajurldb.o .libs/libajaxdb_la-ajvardb.o .libs/libajaxdb_la-ajxmldb.o -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib /usr/local/lib/libgd.so -lpng -lz -lm -O2 -fstack-protector-strong -O2 -Wl,-soname -Wl,libajaxdb.so.6 -o .libs/libajaxdb.so.6.0.5 libtool: link: (cd ".libs" && rm -f "libajaxdb.so.6" && ln -s "libajaxdb.so.6.0.5" "libajaxdb.so.6") libtool: link: (cd ".libs" && rm -f "libajaxdb.so" && ln -s "libajaxdb.so.6.0.5" "libajaxdb.so") libtool: link: ar cru .libs/libajaxdb.a libajaxdb_la-ajassemdb.o libajaxdb_la-ajdas.o libajaxdb_la-ajfeatdb.o libajaxdb_la-ajmart.o libajaxdb_la-ajobodb.o libajaxdb_la-ajrefseqdb.o libajaxdb_la-ajresourcedb.o libajaxdb_la-ajseqdb.o libajaxdb_la-ajsoap.o libajaxdb_la-ajtaxdb.o libajaxdb_la-ajtextdb.o libajaxdb_la-ajurldb.o libajaxdb_la-ajvardb.o libajaxdb_la-ajxmldb.o libtool: link: ranlib .libs/libajaxdb.a libtool: link: ( cd ".libs" && rm -f "libajaxdb.la" && ln -s "../libajaxdb.la" "libajaxdb.la" ) gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/ajaxdb' Making all in acd gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/acd' /bin/sh ../../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ajaxdb -I../../ajax/ensembl -I../../ajax/graphics -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libacd_la-ajacd.lo -MD -MP -MF .deps/libacd_la-ajacd.Tpo -c -o libacd_la-ajacd.lo `test -f 'ajacd.c' || echo './'`ajacd.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ajaxdb -I../../ajax/ensembl -I../../ajax/graphics -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libacd_la-ajacd.lo -MD -MP -MF .deps/libacd_la-ajacd.Tpo -c ajacd.c -fPIC -DPIC -o .libs/libacd_la-ajacd.o In file included from ajacd.c:38: In file included from ../../ajax/core/ajlib.h:34: ../../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../../ajax/core -I../../ajax/ajaxdb -I../../ajax/ensembl -I../../ajax/graphics -I../../ajax/pcre -I../../ajax/expat -I../../ajax/zlib -I../../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libacd_la-ajacd.lo -MD -MP -MF .deps/libacd_la-ajacd.Tpo -c ajacd.c -o libacd_la-ajacd.o >/dev/null 2>&1 mv -f .deps/libacd_la-ajacd.Tpo .deps/libacd_la-ajacd.Plo /bin/sh ../../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -version-info 6:5:0 -L/usr/local/lib -L/usr/local/lib -o libacd.la -rpath /usr/local/emboss/lib libacd_la-ajacd.lo -lm -lgd -lpng -lz -lm libtool: link: cc -shared -fPIC -DPIC .libs/libacd_la-ajacd.o -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib /usr/local/lib/libgd.so -lpng -lz -lm -O2 -fstack-protector-strong -O2 -Wl,-soname -Wl,libacd.so.6 -o .libs/libacd.so.6.0.5 libtool: link: (cd ".libs" && rm -f "libacd.so.6" && ln -s "libacd.so.6.0.5" "libacd.so.6") libtool: link: (cd ".libs" && rm -f "libacd.so" && ln -s "libacd.so.6.0.5" "libacd.so") libtool: link: ar cru .libs/libacd.a libacd_la-ajacd.o libtool: link: ranlib .libs/libacd.a libtool: link: ( cd ".libs" && rm -f "libacd.la" && ln -s "../libacd.la" "libacd.la" ) gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/acd' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' gmake[2]: Nothing to be done for 'all-am'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' Making all in nucleus gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/nucleus' /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embaln.lo -MD -MP -MF .deps/libnucleus_la-embaln.Tpo -c -o libnucleus_la-embaln.lo `test -f 'embaln.c' || echo './'`embaln.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embcom.lo -MD -MP -MF .deps/libnucleus_la-embcom.Tpo -c -o libnucleus_la-embcom.lo `test -f 'embcom.c' || echo './'`embcom.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embcons.lo -MD -MP -MF .deps/libnucleus_la-embcons.Tpo -c -o libnucleus_la-embcons.lo `test -f 'embcons.c' || echo './'`embcons.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT 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-I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embdmx.lo -MD -MP -MF .deps/libnucleus_la-embdmx.Tpo -c -o libnucleus_la-embdmx.lo `test -f 'embdmx.c' || echo './'`embdmx.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embdomain.lo -MD -MP -MF .deps/libnucleus_la-embdomain.Tpo -c -o libnucleus_la-embdomain.lo `test -f 'embdomain.c' || echo './'`embdomain.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embest.lo -MD -MP -MF .deps/libnucleus_la-embest.Tpo -c -o libnucleus_la-embest.lo `test -f 'embest.c' || echo './'`embest.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embexit.lo -MD -MP -MF .deps/libnucleus_la-embexit.Tpo -c -o libnucleus_la-embexit.lo `test -f 'embexit.c' || echo './'`embexit.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embgroup.lo -MD -MP -MF .deps/libnucleus_la-embgroup.Tpo -c -o libnucleus_la-embgroup.lo `test -f 'embgroup.c' || echo './'`embgroup.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embiep.lo -MD -MP -MF .deps/libnucleus_la-embiep.Tpo -c -o libnucleus_la-embiep.lo `test -f 'embiep.c' || echo './'`embiep.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embindex.lo -MD -MP -MF .deps/libnucleus_la-embindex.Tpo -c -o libnucleus_la-embindex.lo `test -f 'embindex.c' || echo './'`embindex.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embinit.lo -MD -MP -MF .deps/libnucleus_la-embinit.Tpo -c -o libnucleus_la-embinit.lo `test -f 'embinit.c' || echo './'`embinit.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embmat.lo -MD -MP -MF .deps/libnucleus_la-embmat.Tpo -c -o libnucleus_la-embmat.lo `test -f 'embmat.c' || echo './'`embmat.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embmisc.lo -MD -MP -MF .deps/libnucleus_la-embmisc.Tpo -c -o libnucleus_la-embmisc.lo `test -f 'embmisc.c' || echo './'`embmisc.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embmol.lo -MD -MP -MF .deps/libnucleus_la-embmol.Tpo -c -o libnucleus_la-embmol.lo `test -f 'embmol.c' || echo './'`embmol.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embnmer.lo -MD -MP -MF .deps/libnucleus_la-embnmer.Tpo -c -o libnucleus_la-embnmer.lo `test -f 'embnmer.c' || echo './'`embnmer.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embpat.lo -MD -MP -MF .deps/libnucleus_la-embpat.Tpo -c -o libnucleus_la-embpat.lo `test -f 'embpat.c' || echo './'`embpat.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embpatlist.lo -MD -MP -MF .deps/libnucleus_la-embpatlist.Tpo -c -o libnucleus_la-embpatlist.lo `test -f 'embpatlist.c' || echo './'`embpatlist.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embprop.lo -MD -MP -MF .deps/libnucleus_la-embprop.Tpo -c -o libnucleus_la-embprop.lo `test -f 'embprop.c' || echo './'`embprop.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embpdb.lo -MD -MP -MF .deps/libnucleus_la-embpdb.Tpo -c -o libnucleus_la-embpdb.lo `test -f 'embpdb.c' || echo './'`embpdb.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embread.lo -MD -MP -MF .deps/libnucleus_la-embread.Tpo -c -o libnucleus_la-embread.lo `test -f 'embread.c' || echo './'`embread.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embsig.lo -MD -MP -MF .deps/libnucleus_la-embsig.Tpo -c -o libnucleus_la-embsig.lo `test -f 'embsig.c' || echo './'`embsig.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embshow.lo -MD -MP -MF .deps/libnucleus_la-embshow.Tpo -c -o libnucleus_la-embshow.lo `test -f 'embshow.c' || echo './'`embshow.c /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embword.lo -MD -MP -MF .deps/libnucleus_la-embword.Tpo -c -o libnucleus_la-embword.lo `test -f 'embword.c' || echo './'`embword.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embcom.lo -MD -MP -MF .deps/libnucleus_la-embcom.Tpo -c embcom.c -fPIC -DPIC -o .libs/libnucleus_la-embcom.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embcons.lo -MD -MP -MF .deps/libnucleus_la-embcons.Tpo -c embcons.c -fPIC -DPIC -o .libs/libnucleus_la-embcons.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embdata.lo -MD -MP -MF .deps/libnucleus_la-embdata.Tpo -c embdata.c -fPIC -DPIC -o .libs/libnucleus_la-embdata.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embaln.lo -MD -MP -MF .deps/libnucleus_la-embaln.Tpo -c embaln.c -fPIC -DPIC -o .libs/libnucleus_la-embaln.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embdomain.lo -MD -MP -MF .deps/libnucleus_la-embdomain.Tpo -c embdomain.c -fPIC -DPIC -o .libs/libnucleus_la-embdomain.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embest.lo -MD -MP -MF .deps/libnucleus_la-embest.Tpo -c embest.c -fPIC -DPIC -o .libs/libnucleus_la-embest.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embdmx.lo -MD -MP -MF .deps/libnucleus_la-embdmx.Tpo -c embdmx.c -fPIC -DPIC -o .libs/libnucleus_la-embdmx.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embgroup.lo -MD -MP -MF .deps/libnucleus_la-embgroup.Tpo -c embgroup.c -fPIC -DPIC -o .libs/libnucleus_la-embgroup.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embdbi.lo -MD -MP -MF .deps/libnucleus_la-embdbi.Tpo -c embdbi.c -fPIC -DPIC -o .libs/libnucleus_la-embdbi.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embiep.lo -MD -MP -MF .deps/libnucleus_la-embiep.Tpo -c embiep.c -fPIC -DPIC -o .libs/libnucleus_la-embiep.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embindex.lo -MD -MP -MF .deps/libnucleus_la-embindex.Tpo -c embindex.c -fPIC -DPIC -o .libs/libnucleus_la-embindex.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embexit.lo -MD -MP -MF .deps/libnucleus_la-embexit.Tpo -c embexit.c -fPIC -DPIC -o .libs/libnucleus_la-embexit.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embmat.lo -MD -MP -MF .deps/libnucleus_la-embmat.Tpo -c embmat.c -fPIC -DPIC -o .libs/libnucleus_la-embmat.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embmol.lo -MD -MP -MF .deps/libnucleus_la-embmol.Tpo -c embmol.c -fPIC -DPIC -o .libs/libnucleus_la-embmol.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embmisc.lo -MD -MP -MF .deps/libnucleus_la-embmisc.Tpo -c embmisc.c -fPIC -DPIC -o .libs/libnucleus_la-embmisc.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embprop.lo -MD -MP -MF .deps/libnucleus_la-embprop.Tpo -c embprop.c -fPIC -DPIC -o .libs/libnucleus_la-embprop.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embpdb.lo -MD -MP -MF .deps/libnucleus_la-embpdb.Tpo -c embpdb.c -fPIC -DPIC -o .libs/libnucleus_la-embpdb.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embpat.lo -MD -MP -MF .deps/libnucleus_la-embpat.Tpo -c embpat.c -fPIC -DPIC -o .libs/libnucleus_la-embpat.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embnmer.lo -MD -MP -MF .deps/libnucleus_la-embnmer.Tpo -c embnmer.c -fPIC -DPIC -o .libs/libnucleus_la-embnmer.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embinit.lo -MD -MP -MF .deps/libnucleus_la-embinit.Tpo -c embinit.c -fPIC -DPIC -o .libs/libnucleus_la-embinit.o In file included from embcons.c:27: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embsig.lo -MD -MP -MF .deps/libnucleus_la-embsig.Tpo -c embsig.c -fPIC -DPIC -o .libs/libnucleus_la-embsig.o In file included from embcom.c:30: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embpatlist.lo -MD -MP -MF .deps/libnucleus_la-embpatlist.Tpo -c embpatlist.c -fPIC -DPIC -o .libs/libnucleus_la-embpatlist.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embread.lo -MD -MP -MF .deps/libnucleus_la-embread.Tpo -c embread.c -fPIC -DPIC -o .libs/libnucleus_la-embread.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embshow.lo -MD -MP -MF .deps/libnucleus_la-embshow.Tpo -c embshow.c -fPIC -DPIC -o .libs/libnucleus_la-embshow.o In file included from embaln.c:27: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embword.lo -MD -MP -MF .deps/libnucleus_la-embword.Tpo -c embword.c -fPIC -DPIC -o .libs/libnucleus_la-embword.o In file included from embmisc.c:27: In file included from ./embmisc.h:37: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from embdomain.c:28: In file included from ./embdomain.h:37: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from embmol.c:28: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from embiep.c:28: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from embmat.c:28: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from embindex.c:28: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embcom.lo -MD -MP -MF .deps/libnucleus_la-embcom.Tpo -c embcom.c -o libnucleus_la-embcom.o >/dev/null 2>&1 In file included from embprop.c:33: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embcons.lo -MD -MP -MF .deps/libnucleus_la-embcons.Tpo -c embcons.c -o libnucleus_la-embcons.o >/dev/null 2>&1 In file included from embpdb.c:30: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from embsig.c:28: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from embexit.c:27: In file included from ./embexit.h:37: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from embinit.c:26: In file included from ./embinit.h:36: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embaln.lo -MD -MP -MF .deps/libnucleus_la-embaln.Tpo -c embaln.c -o libnucleus_la-embaln.o >/dev/null 2>&1 In file included from embgroup.c:28: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from embpatlist.c:27: In file included from ./embpatlist.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from embshow.c:27: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embdomain.lo -MD -MP -MF .deps/libnucleus_la-embdomain.Tpo -c embdomain.c -o libnucleus_la-embdomain.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embmisc.lo -MD -MP -MF .deps/libnucleus_la-embmisc.Tpo -c embmisc.c -o libnucleus_la-embmisc.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embiep.lo -MD -MP -MF .deps/libnucleus_la-embiep.Tpo -c embiep.c -o libnucleus_la-embiep.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embindex.lo -MD -MP -MF .deps/libnucleus_la-embindex.Tpo -c embindex.c -o libnucleus_la-embindex.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embmol.lo -MD -MP -MF .deps/libnucleus_la-embmol.Tpo -c embmol.c -o libnucleus_la-embmol.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embmat.lo -MD -MP -MF .deps/libnucleus_la-embmat.Tpo -c embmat.c -o libnucleus_la-embmat.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embprop.lo -MD -MP -MF .deps/libnucleus_la-embprop.Tpo -c embprop.c -o libnucleus_la-embprop.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embpdb.lo -MD -MP -MF .deps/libnucleus_la-embpdb.Tpo -c embpdb.c -o libnucleus_la-embpdb.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embsig.lo -MD -MP -MF .deps/libnucleus_la-embsig.Tpo -c embsig.c -o libnucleus_la-embsig.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embinit.lo -MD -MP -MF .deps/libnucleus_la-embinit.Tpo -c embinit.c -o libnucleus_la-embinit.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embexit.lo -MD -MP -MF .deps/libnucleus_la-embexit.Tpo -c embexit.c -o libnucleus_la-embexit.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embgroup.lo -MD -MP -MF .deps/libnucleus_la-embgroup.Tpo -c embgroup.c -o libnucleus_la-embgroup.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embpatlist.lo -MD -MP -MF .deps/libnucleus_la-embpatlist.Tpo -c embpatlist.c -o libnucleus_la-embpatlist.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embshow.lo -MD -MP -MF .deps/libnucleus_la-embshow.Tpo -c embshow.c -o libnucleus_la-embshow.o >/dev/null 2>&1 In file included from embdata.c:27: In file included from ./embdata.h:36: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libnucleus_la-embcons.Tpo .deps/libnucleus_la-embcons.Plo mv -f .deps/libnucleus_la-embaln.Tpo .deps/libnucleus_la-embaln.Plo In file included from embest.c:31: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embdata.lo -MD -MP -MF .deps/libnucleus_la-embdata.Tpo -c embdata.c -o libnucleus_la-embdata.o >/dev/null 2>&1 In file included from embword.c:27: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libnucleus_la-embmisc.Tpo .deps/libnucleus_la-embmisc.Plo mv -f .deps/libnucleus_la-embmat.Tpo .deps/libnucleus_la-embmat.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embest.lo -MD -MP -MF .deps/libnucleus_la-embest.Tpo -c embest.c -o libnucleus_la-embest.o >/dev/null 2>&1 libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embword.lo -MD -MP -MF .deps/libnucleus_la-embword.Tpo -c embword.c -o libnucleus_la-embword.o >/dev/null 2>&1 In file included from embdmx.c:38: In file included from ./embdmx.h:40: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ embdmx.c:2245:31: warning: implicit conversion from enumeration type 'EmbESignatureType' (aka 'enum EmbOSignatureType') to different enumeration type 'AjEDomainType' (aka 'enum AjODomainType') [-Wenum-conversion] 2245 | scophit->Type = hitlist->Type; | ~ ~~~~~~~~~^~~~ 2 warnings generated. mv -f .deps/libnucleus_la-embpatlist.Tpo .deps/libnucleus_la-embpatlist.Plo mv -f .deps/libnucleus_la-embdata.Tpo .deps/libnucleus_la-embdata.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embdmx.lo -MD -MP -MF .deps/libnucleus_la-embdmx.Tpo -c embdmx.c -o libnucleus_la-embdmx.o >/dev/null 2>&1 mv -f .deps/libnucleus_la-embdomain.Tpo .deps/libnucleus_la-embdomain.Plo mv -f .deps/libnucleus_la-embword.Tpo .deps/libnucleus_la-embword.Plo mv -f .deps/libnucleus_la-embest.Tpo .deps/libnucleus_la-embest.Plo mv -f .deps/libnucleus_la-embmol.Tpo .deps/libnucleus_la-embmol.Plo mv -f .deps/libnucleus_la-embpdb.Tpo .deps/libnucleus_la-embpdb.Plo mv -f .deps/libnucleus_la-embcom.Tpo .deps/libnucleus_la-embcom.Plo In file included from embdbi.c:27: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libnucleus_la-embsig.Tpo .deps/libnucleus_la-embsig.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embdbi.lo -MD -MP -MF .deps/libnucleus_la-embdbi.Tpo -c embdbi.c -o libnucleus_la-embdbi.o >/dev/null 2>&1 In file included from embnmer.c:28: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/libnucleus_la-embshow.Tpo .deps/libnucleus_la-embshow.Plo mv -f .deps/libnucleus_la-embdbi.Tpo .deps/libnucleus_la-embdbi.Plo libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embnmer.lo -MD -MP -MF .deps/libnucleus_la-embnmer.Tpo -c embnmer.c -o libnucleus_la-embnmer.o >/dev/null 2>&1 mv -f .deps/libnucleus_la-embnmer.Tpo .deps/libnucleus_la-embnmer.Plo mv -f .deps/libnucleus_la-embexit.Tpo .deps/libnucleus_la-embexit.Plo mv -f .deps/libnucleus_la-embdmx.Tpo .deps/libnucleus_la-embdmx.Plo mv -f .deps/libnucleus_la-embinit.Tpo .deps/libnucleus_la-embinit.Plo mv -f .deps/libnucleus_la-embiep.Tpo .deps/libnucleus_la-embiep.Plo mv -f .deps/libnucleus_la-embindex.Tpo .deps/libnucleus_la-embindex.Plo mv -f .deps/libnucleus_la-embgroup.Tpo .deps/libnucleus_la-embgroup.Plo In file included from embpat.c:28: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embpat.lo -MD -MP -MF .deps/libnucleus_la-embpat.Tpo -c embpat.c -o libnucleus_la-embpat.o >/dev/null 2>&1 mv -f .deps/libnucleus_la-embpat.Tpo .deps/libnucleus_la-embpat.Plo In file included from embread.c:28: In file included from ../ajax/core/ajlib.h:34: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. libtool: compile: cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../plplot -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../ajax/graphics -I../ajax/ensembl -I../ajax/ajaxdb -I../ajax/acd -DNO_AUTH -I/usr/local/include -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT libnucleus_la-embread.lo -MD -MP -MF .deps/libnucleus_la-embread.Tpo -c embread.c -o libnucleus_la-embread.o >/dev/null 2>&1 mv -f .deps/libnucleus_la-embprop.Tpo .deps/libnucleus_la-embprop.Plo mv -f .deps/libnucleus_la-embread.Tpo .deps/libnucleus_la-embread.Plo /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -version-info 6:5:0 -L/usr/local/lib -L/usr/local/lib -o libnucleus.la -rpath /usr/local/emboss/lib libnucleus_la-embaln.lo libnucleus_la-embcom.lo libnucleus_la-embcons.lo libnucleus_la-embdata.lo libnucleus_la-embdbi.lo libnucleus_la-embdmx.lo libnucleus_la-embdomain.lo libnucleus_la-embest.lo libnucleus_la-embexit.lo libnucleus_la-embgroup.lo libnucleus_la-embiep.lo libnucleus_la-embindex.lo libnucleus_la-embinit.lo libnucleus_la-embmat.lo libnucleus_la-embmisc.lo libnucleus_la-embmol.lo libnucleus_la-embnmer.lo libnucleus_la-embpat.lo libnucleus_la-embpatlist.lo libnucleus_la-embprop.lo libnucleus_la-embpdb.lo libnucleus_la-embread.lo libnucleus_la-embsig.lo libnucleus_la-embshow.lo libnucleus_la-embword.lo -lm -lgd -lpng -lz -lm libtool: link: cc -shared -fPIC -DPIC .libs/libnucleus_la-embaln.o .libs/libnucleus_la-embcom.o .libs/libnucleus_la-embcons.o .libs/libnucleus_la-embdata.o .libs/libnucleus_la-embdbi.o .libs/libnucleus_la-embdmx.o .libs/libnucleus_la-embdomain.o .libs/libnucleus_la-embest.o .libs/libnucleus_la-embexit.o .libs/libnucleus_la-embgroup.o .libs/libnucleus_la-embiep.o .libs/libnucleus_la-embindex.o .libs/libnucleus_la-embinit.o .libs/libnucleus_la-embmat.o .libs/libnucleus_la-embmisc.o .libs/libnucleus_la-embmol.o .libs/libnucleus_la-embnmer.o .libs/libnucleus_la-embpat.o .libs/libnucleus_la-embpatlist.o .libs/libnucleus_la-embprop.o .libs/libnucleus_la-embpdb.o .libs/libnucleus_la-embread.o .libs/libnucleus_la-embsig.o .libs/libnucleus_la-embshow.o .libs/libnucleus_la-embword.o -Wl,-rpath -Wl,/usr/local/lib -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib /usr/local/lib/libgd.so -lpng -lz -lm -O2 -fstack-protector-strong -O2 -Wl,-soname -Wl,libnucleus.so.6 -o .libs/libnucleus.so.6.0.5 libtool: link: (cd ".libs" && rm -f "libnucleus.so.6" && ln -s "libnucleus.so.6.0.5" "libnucleus.so.6") libtool: link: (cd ".libs" && rm -f "libnucleus.so" && ln -s "libnucleus.so.6.0.5" "libnucleus.so") libtool: link: ar cru .libs/libnucleus.a libnucleus_la-embaln.o libnucleus_la-embcom.o libnucleus_la-embcons.o libnucleus_la-embdata.o libnucleus_la-embdbi.o libnucleus_la-embdmx.o libnucleus_la-embdomain.o libnucleus_la-embest.o libnucleus_la-embexit.o libnucleus_la-embgroup.o libnucleus_la-embiep.o libnucleus_la-embindex.o libnucleus_la-embinit.o libnucleus_la-embmat.o libnucleus_la-embmisc.o libnucleus_la-embmol.o libnucleus_la-embnmer.o libnucleus_la-embpat.o libnucleus_la-embpatlist.o libnucleus_la-embprop.o libnucleus_la-embpdb.o libnucleus_la-embread.o libnucleus_la-embsig.o libnucleus_la-embshow.o libnucleus_la-embword.o libtool: link: ranlib .libs/libnucleus.a libtool: link: ( cd ".libs" && rm -f "libnucleus.la" && ln -s "../libnucleus.la" "libnucleus.la" ) gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/nucleus' Making all in emboss gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' Making all in acd gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/acd' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/acd' Making all in data gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' Making all in AAINDEX gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/AAINDEX' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/AAINDEX' Making all in CODONS gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/CODONS' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/CODONS' Making all in JASPAR_CNE gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CNE' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CNE' Making all in JASPAR_CORE gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CORE' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CORE' Making all in JASPAR_FAM gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_FAM' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_FAM' Making all in JASPAR_PBM gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM' Making all in JASPAR_PBM_HLH gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HLH' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HLH' Making all in JASPAR_PBM_HOMEO gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HOMEO' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HOMEO' Making all in JASPAR_PHYLOFACTS gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PHYLOFACTS' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PHYLOFACTS' Making all in JASPAR_POLII gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_POLII' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_POLII' Making all in JASPAR_SPLICE gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_SPLICE' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_SPLICE' Making all in OBO gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/OBO' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/OBO' Making all in PRINTS gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PRINTS' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PRINTS' Making all in PROSITE gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PROSITE' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PROSITE' Making all in REBASE gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/REBASE' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/REBASE' Making all in TAXONOMY gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/TAXONOMY' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/TAXONOMY' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' gmake[3]: Nothing to be done for 'all-am'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' Making all in index gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/index' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/index' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT aaindexextract.o -MD -MP -MF .deps/aaindexextract.Tpo -c -o aaindexextract.o aaindexextract.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT abiview.o -MD -MP -MF .deps/abiview.Tpo -c -o abiview.o abiview.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT acdc.o -MD -MP -MF .deps/acdc.Tpo -c -o acdc.o acdc.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT acdgalaxy.o -MD -MP -MF .deps/acdgalaxy.Tpo -c -o acdgalaxy.o acdgalaxy.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT acdlog.o -MD -MP -MF .deps/acdlog.Tpo -c -o acdlog.o acdlog.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT acdpretty.o -MD -MP -MF .deps/acdpretty.Tpo -c -o acdpretty.o acdpretty.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT acdtable.o -MD -MP -MF .deps/acdtable.Tpo -c -o acdtable.o acdtable.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT acdtrace.o -MD -MP -MF .deps/acdtrace.Tpo -c -o acdtrace.o acdtrace.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT acdvalid.o -MD -MP -MF .deps/acdvalid.Tpo -c -o acdvalid.o acdvalid.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT aligncopy.o -MD -MP -MF .deps/aligncopy.Tpo -c -o aligncopy.o aligncopy.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT aligncopypair.o -MD -MP -MF .deps/aligncopypair.Tpo -c -o aligncopypair.o aligncopypair.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT antigenic.o -MD -MP -MF .deps/antigenic.Tpo -c -o antigenic.o antigenic.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT assemblyget.o -MD -MP -MF .deps/assemblyget.Tpo -c -o assemblyget.o assemblyget.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT backtranambig.o -MD -MP -MF .deps/backtranambig.Tpo -c -o backtranambig.o backtranambig.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT backtranseq.o -MD -MP -MF .deps/backtranseq.Tpo -c -o backtranseq.o backtranseq.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT banana.o -MD -MP -MF .deps/banana.Tpo -c -o banana.o banana.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT biosed.o -MD -MP -MF .deps/biosed.Tpo -c -o biosed.o biosed.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT btwisted.o -MD -MP -MF .deps/btwisted.Tpo -c -o btwisted.o btwisted.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT cachedas.o -MD -MP -MF .deps/cachedas.Tpo -c -o cachedas.o cachedas.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT cachedbfetch.o -MD -MP -MF .deps/cachedbfetch.Tpo -c -o cachedbfetch.o cachedbfetch.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT cacheebeyesearch.o -MD -MP -MF .deps/cacheebeyesearch.Tpo -c -o cacheebeyesearch.o cacheebeyesearch.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT cacheensembl.o -MD -MP -MF .deps/cacheensembl.Tpo -c -o cacheensembl.o cacheensembl.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT cai.o -MD -MP -MF .deps/cai.Tpo -c -o cai.o cai.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT chaos.o -MD -MP -MF .deps/chaos.Tpo -c -o chaos.o chaos.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT charge.o -MD -MP -MF .deps/charge.Tpo -c -o charge.o charge.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT checktrans.o -MD -MP -MF .deps/checktrans.Tpo -c -o checktrans.o checktrans.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT chips.o -MD -MP -MF .deps/chips.Tpo -c -o chips.o chips.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT cirdna.o -MD -MP -MF .deps/cirdna.Tpo -c -o cirdna.o cirdna.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT codcmp.o -MD -MP -MF .deps/codcmp.Tpo -c -o codcmp.o codcmp.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT codcopy.o -MD -MP -MF .deps/codcopy.Tpo -c -o codcopy.o codcopy.c In file included from acdgalaxy.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT coderet.o -MD -MP -MF .deps/coderet.Tpo -c -o coderet.o coderet.c In file included from aaindexextract.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from acdc.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT compseq.o -MD -MP -MF .deps/compseq.Tpo -c -o compseq.o compseq.c mv -f .deps/acdgalaxy.Tpo .deps/acdgalaxy.Po mv -f .deps/aaindexextract.Tpo .deps/aaindexextract.Po mv -f .deps/acdc.Tpo .deps/acdc.Po In file included from acdtable.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from acdpretty.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT cons.o -MD -MP -MF .deps/cons.Tpo -c -o cons.o cons.c In file included from acdlog.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from abiview.c:26: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from aligncopy.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from antigenic.c:27: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/acdtable.Tpo .deps/acdtable.Po mv -f .deps/acdpretty.Tpo .deps/acdpretty.Po mv -f .deps/acdlog.Tpo .deps/acdlog.Po In file included from assemblyget.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/abiview.Tpo .deps/abiview.Po mv -f .deps/aligncopy.Tpo .deps/aligncopy.Po In file included from biosed.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/antigenic.Tpo .deps/antigenic.Po In file included from acdvalid.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from backtranambig.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT consambig.o -MD -MP -MF .deps/consambig.Tpo -c -o consambig.o consambig.c In file included from acdtrace.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/biosed.Tpo .deps/biosed.Po In file included from backtranseq.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/backtranambig.Tpo .deps/backtranambig.Po mv -f .deps/assemblyget.Tpo .deps/assemblyget.Po mv -f .deps/acdvalid.Tpo .deps/acdvalid.Po In file included from banana.c:26: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/acdtrace.Tpo .deps/acdtrace.Po In file included from cachedbfetch.c:21: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT cpgplot.o -MD -MP -MF .deps/cpgplot.Tpo -c -o cpgplot.o cpgplot.c mv -f .deps/cachedbfetch.Tpo .deps/cachedbfetch.Po mv -f .deps/banana.Tpo .deps/banana.Po mv -f .deps/backtranseq.Tpo .deps/backtranseq.Po In file included from aligncopypair.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT cpgreport.o -MD -MP -MF .deps/cpgreport.Tpo -c -o cpgreport.o cpgreport.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT cusp.o -MD -MP -MF .deps/cusp.Tpo -c -o cusp.o cusp.c In file included from cai.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/cai.Tpo .deps/cai.Po mv -f .deps/aligncopypair.Tpo .deps/aligncopypair.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT cutgextract.o -MD -MP -MF .deps/cutgextract.Tpo -c -o cutgextract.o cutgextract.c In file included from charge.c:25: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT cutseq.o -MD -MP -MF .deps/cutseq.Tpo -c -o cutseq.o cutseq.c In file included from cirdna.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/charge.Tpo .deps/charge.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dan.o -MD -MP -MF .deps/dan.Tpo -c -o dan.o dan.c mv -f .deps/cirdna.Tpo .deps/cirdna.Po In file included from coderet.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dbiblast.o -MD -MP -MF .deps/dbiblast.Tpo -c -o dbiblast.o dbiblast.c In file included from codcopy.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dbifasta.o -MD -MP -MF .deps/dbifasta.Tpo -c -o dbifasta.o dbifasta.c mv -f .deps/coderet.Tpo .deps/coderet.Po mv -f .deps/codcopy.Tpo .deps/codcopy.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dbiflat.o -MD -MP -MF .deps/dbiflat.Tpo -c -o dbiflat.o dbiflat.c In file included from compseq.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from cons.c:34: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dbigcg.o -MD -MP -MF .deps/dbigcg.Tpo -c -o dbigcg.o dbigcg.c mv -f .deps/cons.Tpo .deps/cons.Po mv -f .deps/compseq.Tpo .deps/compseq.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dbtell.o -MD -MP -MF .deps/dbtell.Tpo -c -o dbtell.o dbtell.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dbxcompress.o -MD -MP -MF .deps/dbxcompress.Tpo -c -o dbxcompress.o dbxcompress.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dbxedam.o -MD -MP -MF .deps/dbxedam.Tpo -c -o dbxedam.o dbxedam.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dbxfasta.o -MD -MP -MF .deps/dbxfasta.Tpo -c -o dbxfasta.o dbxfasta.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dbxflat.o -MD -MP -MF .deps/dbxflat.Tpo -c -o dbxflat.o dbxflat.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dbxgcg.o -MD -MP -MF .deps/dbxgcg.Tpo -c -o dbxgcg.o dbxgcg.c In file included from cpgreport.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dbxobo.o -MD -MP -MF .deps/dbxobo.Tpo -c -o dbxobo.o dbxobo.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dbxreport.o -MD -MP -MF .deps/dbxreport.Tpo -c -o dbxreport.o dbxreport.c In file included from cusp.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dbxresource.o -MD -MP -MF .deps/dbxresource.Tpo -c -o dbxresource.o dbxresource.c mv -f .deps/cpgreport.Tpo .deps/cpgreport.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dbxstat.o -MD -MP -MF .deps/dbxstat.Tpo -c -o dbxstat.o dbxstat.c mv -f .deps/cusp.Tpo .deps/cusp.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dbxtax.o -MD -MP -MF .deps/dbxtax.Tpo -c -o dbxtax.o dbxtax.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dbxuncompress.o -MD -MP -MF .deps/dbxuncompress.Tpo -c -o dbxuncompress.o dbxuncompress.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT degapseq.o -MD -MP -MF .deps/degapseq.Tpo -c -o degapseq.o degapseq.c In file included from cpgplot.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from cutseq.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from dan.c:25: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT density.o -MD -MP -MF .deps/density.Tpo -c -o density.o density.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT descseq.o -MD -MP -MF .deps/descseq.Tpo -c -o descseq.o descseq.c mv -f .deps/cpgplot.Tpo .deps/cpgplot.Po mv -f .deps/dan.Tpo .deps/dan.Po mv -f .deps/cutseq.Tpo .deps/cutseq.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT diffseq.o -MD -MP -MF .deps/diffseq.Tpo -c -o diffseq.o diffseq.c In file included from dbifasta.c:47: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT distmat.o -MD -MP -MF .deps/distmat.Tpo -c -o distmat.o distmat.c In file included from chips.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/dbifasta.Tpo .deps/dbifasta.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dotmatcher.o -MD -MP -MF .deps/dotmatcher.Tpo -c -o dotmatcher.o dotmatcher.c In file included from btwisted.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from dbigcg.c:47: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/chips.Tpo .deps/chips.Po mv -f .deps/btwisted.Tpo .deps/btwisted.Po mv -f .deps/dbigcg.Tpo .deps/dbigcg.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dotpath.o -MD -MP -MF .deps/dotpath.Tpo -c -o dotpath.o dotpath.c In file included from checktrans.c:27: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from cachedas.c:21: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dottup.o -MD -MP -MF .deps/dottup.Tpo -c -o dottup.o dottup.c In file included from dbxedam.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from dbxcompress.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/checktrans.Tpo .deps/checktrans.Po mv -f .deps/cachedas.Tpo .deps/cachedas.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT dreg.o -MD -MP -MF .deps/dreg.Tpo -c -o dreg.o dreg.c mv -f .deps/dbxcompress.Tpo .deps/dbxcompress.Po In file included from dbxstat.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from dbxobo.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from dbxreport.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT drfinddata.o -MD -MP -MF .deps/drfinddata.Tpo -c -o drfinddata.o drfinddata.c In file included from dbxuncompress.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from dbxflat.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/dbxstat.Tpo .deps/dbxstat.Po mv -f .deps/dbxuncompress.Tpo .deps/dbxuncompress.Po In file included from dbxtax.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/dbxreport.Tpo .deps/dbxreport.Po mv -f .deps/dbxobo.Tpo .deps/dbxobo.Po mv -f .deps/dbxflat.Tpo .deps/dbxflat.Po mv -f .deps/dbxedam.Tpo .deps/dbxedam.Po mv -f .deps/dbxtax.Tpo .deps/dbxtax.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT drfindformat.o -MD -MP -MF .deps/drfindformat.Tpo -c -o drfindformat.o drfindformat.c In file included from descseq.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from dbxgcg.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT drfindid.o -MD -MP -MF .deps/drfindid.Tpo -c -o drfindid.o drfindid.c In file included from density.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/descseq.Tpo .deps/descseq.Po mv -f .deps/dbxgcg.Tpo .deps/dbxgcg.Po In file included from diffseq.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/density.Tpo .deps/density.Po In file included from chaos.c:21: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT drfindresource.o -MD -MP -MF .deps/drfindresource.Tpo -c -o drfindresource.o drfindresource.c mv -f .deps/diffseq.Tpo .deps/diffseq.Po In file included from distmat.c:34: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT drget.o -MD -MP -MF .deps/drget.Tpo -c -o drget.o drget.c In file included from degapseq.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/chaos.Tpo .deps/chaos.Po mv -f .deps/distmat.Tpo .deps/distmat.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT drtext.o -MD -MP -MF .deps/drtext.Tpo -c -o drtext.o drtext.c mv -f .deps/degapseq.Tpo .deps/degapseq.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT edamdef.o -MD -MP -MF .deps/edamdef.Tpo -c -o edamdef.o edamdef.c In file included from dotmatcher.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT edamhasinput.o -MD -MP -MF .deps/edamhasinput.Tpo -c -o edamhasinput.o edamhasinput.c mv -f .deps/dotmatcher.Tpo .deps/dotmatcher.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT edamhasoutput.o -MD -MP -MF .deps/edamhasoutput.Tpo -c -o edamhasoutput.o edamhasoutput.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT edamisformat.o -MD -MP -MF .deps/edamisformat.Tpo -c -o edamisformat.o edamisformat.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT edamisid.o -MD -MP -MF .deps/edamisid.Tpo -c -o edamisid.o edamisid.c In file included from dottup.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT edamname.o -MD -MP -MF .deps/edamname.Tpo -c -o edamname.o edamname.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT edialign.o -MD -MP -MF .deps/edialign.Tpo -c -o edialign.o edialign.c mv -f .deps/dottup.Tpo .deps/dottup.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT einverted.o -MD -MP -MF .deps/einverted.Tpo -c -o einverted.o einverted.c In file included from consambig.c:34: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT embossdata.o -MD -MP -MF .deps/embossdata.Tpo -c -o embossdata.o embossdata.c In file included from drfinddata.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT embossupdate.o -MD -MP -MF .deps/embossupdate.Tpo -c -o embossupdate.o embossupdate.c In file included from drfindformat.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/drfinddata.Tpo .deps/drfinddata.Po mv -f .deps/consambig.Tpo .deps/consambig.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT embossversion.o -MD -MP -MF .deps/embossversion.Tpo -c -o embossversion.o embossversion.c mv -f .deps/drfindformat.Tpo .deps/drfindformat.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT emma.o -MD -MP -MF .deps/emma.Tpo -c -o emma.o emma.c In file included from drfindid.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT emowse.o -MD -MP -MF .deps/emowse.Tpo -c -o emowse.o emowse.c In file included from drfindresource.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT entret.o -MD -MP -MF .deps/entret.Tpo -c -o entret.o entret.c mv -f .deps/drfindresource.Tpo .deps/drfindresource.Po mv -f .deps/drfindid.Tpo .deps/drfindid.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT epestfind.o -MD -MP -MF .deps/epestfind.Tpo -c -o epestfind.o epestfind.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT eprimer3.o -MD -MP -MF .deps/eprimer3.Tpo -c -o eprimer3.o eprimer3.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT eprimer32.o -MD -MP -MF .deps/eprimer32.Tpo -c -o eprimer32.o eprimer32.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT equicktandem.o -MD -MP -MF .deps/equicktandem.Tpo -c -o equicktandem.o equicktandem.c In file included from dbiblast.c:51: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from edamhasinput.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT est2genome.o -MD -MP -MF .deps/est2genome.Tpo -c -o est2genome.o est2genome.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT etandem.o -MD -MP -MF .deps/etandem.Tpo -c -o etandem.o etandem.c In file included from edamisformat.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/dbiblast.Tpo .deps/dbiblast.Po mv -f .deps/edamhasinput.Tpo .deps/edamhasinput.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT extractalign.o -MD -MP -MF .deps/extractalign.Tpo -c -o extractalign.o extractalign.c In file included from cacheensembl.c:33: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from edamname.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/edamisformat.Tpo .deps/edamisformat.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT extractfeat.o -MD -MP -MF .deps/extractfeat.Tpo -c -o extractfeat.o extractfeat.c In file included from edamisid.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/edamname.Tpo .deps/edamname.Po mv -f .deps/cacheensembl.Tpo .deps/cacheensembl.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT extractseq.o -MD -MP -MF .deps/extractseq.Tpo -c -o extractseq.o extractseq.c In file included from edialign.c:25: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/edamisid.Tpo .deps/edamisid.Po In file included from dbxresource.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/edialign.Tpo .deps/edialign.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT featcopy.o -MD -MP -MF .deps/featcopy.Tpo -c -o featcopy.o featcopy.c In file included from emma.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from embossdata.c:26: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/dbxresource.Tpo .deps/dbxresource.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT featmerge.o -MD -MP -MF .deps/featmerge.Tpo -c -o featmerge.o featmerge.c mv -f .deps/emma.Tpo .deps/emma.Po mv -f .deps/embossdata.Tpo .deps/embossdata.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT featreport.o -MD -MP -MF .deps/featreport.Tpo -c -o featreport.o featreport.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT feattext.o -MD -MP -MF .deps/feattext.Tpo -c -o feattext.o feattext.c In file included from emowse.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT findkm.o -MD -MP -MF .deps/findkm.Tpo -c -o findkm.o findkm.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT freak.o -MD -MP -MF .deps/freak.Tpo -c -o freak.o freak.c mv -f .deps/emowse.Tpo .deps/emowse.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT fuzznuc.o -MD -MP -MF .deps/fuzznuc.Tpo -c -o fuzznuc.o fuzznuc.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT fuzzpro.o -MD -MP -MF .deps/fuzzpro.Tpo -c -o fuzzpro.o fuzzpro.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT fuzztran.o -MD -MP -MF .deps/fuzztran.Tpo -c -o fuzztran.o fuzztran.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT garnier.o -MD -MP -MF .deps/garnier.Tpo -c -o garnier.o garnier.c In file included from eprimer3.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT geecee.o -MD -MP -MF .deps/geecee.Tpo -c -o geecee.o geecee.c In file included from dbxfasta.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT getorf.o -MD -MP -MF .deps/getorf.Tpo -c -o getorf.o getorf.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT godef.o -MD -MP -MF .deps/godef.Tpo -c -o godef.o godef.c In file included from equicktandem.c:39: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/eprimer3.Tpo .deps/eprimer3.Po mv -f .deps/dbxfasta.Tpo .deps/dbxfasta.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT goname.o -MD -MP -MF .deps/goname.Tpo -c -o goname.o goname.c In file included from extractalign.c:27: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/equicktandem.Tpo .deps/equicktandem.Po In file included from drtext.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/extractalign.Tpo .deps/extractalign.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT helixturnhelix.o -MD -MP -MF .deps/helixturnhelix.Tpo -c -o helixturnhelix.o helixturnhelix.c In file included from dbiflat.c:47: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/drtext.Tpo .deps/drtext.Po In file included from extractfeat.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT hmoment.o -MD -MP -MF .deps/hmoment.Tpo -c -o hmoment.o hmoment.c In file included from extractseq.c:27: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/extractfeat.Tpo .deps/extractfeat.Po mv -f .deps/dbiflat.Tpo .deps/dbiflat.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT iep.o -MD -MP -MF .deps/iep.Tpo -c -o iep.o iep.c mv -f .deps/extractseq.Tpo .deps/extractseq.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT infoalign.o -MD -MP -MF .deps/infoalign.Tpo -c -o infoalign.o infoalign.c In file included from featreport.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from feattext.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from featmerge.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT infoassembly.o -MD -MP -MF .deps/infoassembly.Tpo -c -o infoassembly.o infoassembly.c mv -f .deps/featreport.Tpo .deps/featreport.Po mv -f .deps/feattext.Tpo .deps/feattext.Po mv -f .deps/featmerge.Tpo .deps/featmerge.Po In file included from featcopy.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT infobase.o -MD -MP -MF .deps/infobase.Tpo -c -o infobase.o infobase.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT inforesidue.o -MD -MP -MF .deps/inforesidue.Tpo -c -o inforesidue.o inforesidue.c mv -f .deps/featcopy.Tpo .deps/featcopy.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT infoseq.o -MD -MP -MF .deps/infoseq.Tpo -c -o infoseq.o infoseq.c In file included from fuzznuc.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT isochore.o -MD -MP -MF .deps/isochore.Tpo -c -o isochore.o isochore.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT jaspextract.o -MD -MP -MF .deps/jaspextract.Tpo -c -o jaspextract.o jaspextract.c In file included from dbtell.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from garnier.c:25: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/fuzznuc.Tpo .deps/fuzznuc.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT jaspscan.o -MD -MP -MF .deps/jaspscan.Tpo -c -o jaspscan.o jaspscan.c mv -f .deps/garnier.Tpo .deps/garnier.Po mv -f .deps/dbtell.Tpo .deps/dbtell.Po In file included from edamhasoutput.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT jembossctl.o -MD -MP -MF .deps/jembossctl.Tpo -c -o jembossctl.o jembossctl.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT lindna.o -MD -MP -MF .deps/lindna.Tpo -c -o lindna.o lindna.c In file included from goname.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from getorf.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/edamhasoutput.Tpo .deps/edamhasoutput.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT listor.o -MD -MP -MF .deps/listor.Tpo -c -o listor.o listor.c In file included from cutgextract.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/goname.Tpo .deps/goname.Po In file included from eprimer32.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/getorf.Tpo .deps/getorf.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT makenucseq.o -MD -MP -MF .deps/makenucseq.Tpo -c -o makenucseq.o makenucseq.c In file included from edamdef.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/eprimer32.Tpo .deps/eprimer32.Po mv -f .deps/edamdef.Tpo .deps/edamdef.Po mv -f .deps/cutgextract.Tpo .deps/cutgextract.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT makeprotseq.o -MD -MP -MF .deps/makeprotseq.Tpo -c -o makeprotseq.o makeprotseq.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT marscan.o -MD -MP -MF .deps/marscan.Tpo -c -o marscan.o marscan.c In file included from hmoment.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT maskambignuc.o -MD -MP -MF .deps/maskambignuc.Tpo -c -o maskambignuc.o maskambignuc.c In file included from embossupdate.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/hmoment.Tpo .deps/hmoment.Po In file included from infoalign.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT maskambigprot.o -MD -MP -MF .deps/maskambigprot.Tpo -c -o maskambigprot.o maskambigprot.c In file included from iep.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from infobase.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT maskfeat.o -MD -MP -MF .deps/maskfeat.Tpo -c -o maskfeat.o maskfeat.c mv -f .deps/infoalign.Tpo .deps/infoalign.Po mv -f .deps/infobase.Tpo .deps/infobase.Po mv -f .deps/iep.Tpo .deps/iep.Po mv -f .deps/embossupdate.Tpo .deps/embossupdate.Po In file included from infoassembly.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT maskseq.o -MD -MP -MF .deps/maskseq.Tpo -c -o maskseq.o maskseq.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT matcher.o -MD -MP -MF .deps/matcher.Tpo -c -o matcher.o matcher.c In file included from dreg.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/infoassembly.Tpo .deps/infoassembly.Po In file included from infoseq.c:26: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from inforesidue.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT megamerger.o -MD -MP -MF .deps/megamerger.Tpo -c -o megamerger.o megamerger.c mv -f .deps/dreg.Tpo .deps/dreg.Po In file included from embossversion.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/inforesidue.Tpo .deps/inforesidue.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT merger.o -MD -MP -MF .deps/merger.Tpo -c -o merger.o merger.c mv -f .deps/infoseq.Tpo .deps/infoseq.Po mv -f .deps/embossversion.Tpo .deps/embossversion.Po In file included from jaspscan.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from jembossctl.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT msbar.o -MD -MP -MF .deps/msbar.Tpo -c -o msbar.o msbar.c In file included from lindna.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT mwcontam.o -MD -MP -MF .deps/mwcontam.Tpo -c -o mwcontam.o mwcontam.c mv -f .deps/lindna.Tpo .deps/lindna.Po mv -f .deps/jembossctl.Tpo .deps/jembossctl.Po mv -f .deps/jaspscan.Tpo .deps/jaspscan.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT mwfilter.o -MD -MP -MF .deps/mwfilter.Tpo -c -o mwfilter.o mwfilter.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT needle.o -MD -MP -MF .deps/needle.Tpo -c -o needle.o needle.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT needleall.o -MD -MP -MF .deps/needleall.Tpo -c -o needleall.o needleall.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT newcpgreport.o -MD -MP -MF .deps/newcpgreport.Tpo -c -o newcpgreport.o newcpgreport.c In file included from entret.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from makenucseq.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT newcpgseek.o -MD -MP -MF .deps/newcpgseek.Tpo -c -o newcpgseek.o newcpgseek.c mv -f .deps/entret.Tpo .deps/entret.Po In file included from maskambignuc.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT newseq.o -MD -MP -MF .deps/newseq.Tpo -c -o newseq.o newseq.c In file included from geecee.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/maskambignuc.Tpo .deps/maskambignuc.Po mv -f .deps/makenucseq.Tpo .deps/makenucseq.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT nohtml.o -MD -MP -MF .deps/nohtml.Tpo -c -o nohtml.o nohtml.c In file included from einverted.c:42: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/geecee.Tpo .deps/geecee.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT noreturn.o -MD -MP -MF .deps/noreturn.Tpo -c -o noreturn.o noreturn.c In file included from fuzzpro.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/einverted.Tpo .deps/einverted.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT nospace.o -MD -MP -MF .deps/nospace.Tpo -c -o nospace.o nospace.c In file included from matcher.c:26: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from megamerger.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from maskseq.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/matcher.Tpo .deps/matcher.Po mv -f .deps/fuzzpro.Tpo .deps/fuzzpro.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT notab.o -MD -MP -MF .deps/notab.Tpo -c -o notab.o notab.c mv -f .deps/maskseq.Tpo .deps/maskseq.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT notseq.o -MD -MP -MF .deps/notseq.Tpo -c -o notseq.o notseq.c mv -f .deps/megamerger.Tpo .deps/megamerger.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT nthseq.o -MD -MP -MF .deps/nthseq.Tpo -c -o nthseq.o nthseq.c In file included from msbar.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT nthseqset.o -MD -MP -MF .deps/nthseqset.Tpo -c -o nthseqset.o nthseqset.c mv -f .deps/msbar.Tpo .deps/msbar.Po In file included from mwfilter.c:25: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT octanol.o -MD -MP -MF .deps/octanol.Tpo -c -o octanol.o octanol.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT oddcomp.o -MD -MP -MF .deps/oddcomp.Tpo -c -o oddcomp.o oddcomp.c In file included from needle.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from maskambigprot.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/mwfilter.Tpo .deps/mwfilter.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ontocount.o -MD -MP -MF .deps/ontocount.Tpo -c -o ontocount.o ontocount.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ontoget.o -MD -MP -MF .deps/ontoget.Tpo -c -o ontoget.o ontoget.c In file included from newcpgseek.c:31: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/needle.Tpo .deps/needle.Po In file included from newseq.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from etandem.c:27: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from newcpgreport.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/maskambigprot.Tpo .deps/maskambigprot.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ontogetcommon.o -MD -MP -MF .deps/ontogetcommon.Tpo -c -o ontogetcommon.o ontogetcommon.c mv -f .deps/newseq.Tpo .deps/newseq.Po mv -f .deps/newcpgseek.Tpo .deps/newcpgseek.Po In file included from nohtml.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/newcpgreport.Tpo .deps/newcpgreport.Po mv -f .deps/etandem.Tpo .deps/etandem.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ontogetdown.o -MD -MP -MF .deps/ontogetdown.Tpo -c -o ontogetdown.o ontogetdown.c mv -f .deps/nohtml.Tpo .deps/nohtml.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ontogetobsolete.o -MD -MP -MF .deps/ontogetobsolete.Tpo -c -o ontogetobsolete.o ontogetobsolete.c In file included from listor.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ontogetroot.o -MD -MP -MF .deps/ontogetroot.Tpo -c -o ontogetroot.o ontogetroot.c In file included from noreturn.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from nospace.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ontogetsibs.o -MD -MP -MF .deps/ontogetsibs.Tpo -c -o ontogetsibs.o ontogetsibs.c mv -f .deps/nospace.Tpo .deps/nospace.Po mv -f .deps/noreturn.Tpo .deps/noreturn.Po mv -f .deps/listor.Tpo .deps/listor.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ontogetup.o -MD -MP -MF .deps/ontogetup.Tpo -c -o ontogetup.o ontogetup.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ontoisobsolete.o -MD -MP -MF .deps/ontoisobsolete.Tpo -c -o ontoisobsolete.o ontoisobsolete.c In file included from notab.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT ontotext.o -MD -MP -MF .deps/ontotext.Tpo -c -o ontotext.o ontotext.c mv -f .deps/notab.Tpo .deps/notab.Po In file included from nthseq.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from notseq.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT palindrome.o -MD -MP -MF .deps/palindrome.Tpo -c -o palindrome.o palindrome.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pasteseq.o -MD -MP -MF .deps/pasteseq.Tpo -c -o pasteseq.o pasteseq.c In file included from nthseqset.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/nthseq.Tpo .deps/nthseq.Po mv -f .deps/notseq.Tpo .deps/notseq.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT patmatdb.o -MD -MP -MF .deps/patmatdb.Tpo -c -o patmatdb.o patmatdb.c mv -f .deps/nthseqset.Tpo .deps/nthseqset.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT patmatmotifs.o -MD -MP -MF .deps/patmatmotifs.Tpo -c -o patmatmotifs.o patmatmotifs.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pepcoil.o -MD -MP -MF .deps/pepcoil.Tpo -c -o pepcoil.o pepcoil.c In file included from oddcomp.c:28: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ontoget.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pepdigest.o -MD -MP -MF .deps/pepdigest.Tpo -c -o pepdigest.o pepdigest.c In file included from octanol.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from marscan.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/ontoget.Tpo .deps/ontoget.Po mv -f .deps/oddcomp.Tpo .deps/oddcomp.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pepinfo.o -MD -MP -MF .deps/pepinfo.Tpo -c -o pepinfo.o pepinfo.c mv -f .deps/marscan.Tpo .deps/marscan.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pepnet.o -MD -MP -MF .deps/pepnet.Tpo -c -o pepnet.o pepnet.c In file included from ontogetroot.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pepstats.o -MD -MP -MF .deps/pepstats.Tpo -c -o pepstats.o pepstats.c In file included from ontogetobsolete.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/octanol.Tpo .deps/octanol.Po In file included from isochore.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/ontogetroot.Tpo .deps/ontogetroot.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pepwheel.o -MD -MP -MF .deps/pepwheel.Tpo -c -o pepwheel.o pepwheel.c mv -f .deps/ontogetobsolete.Tpo .deps/ontogetobsolete.Po mv -f .deps/isochore.Tpo .deps/isochore.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pepwindow.o -MD -MP -MF .deps/pepwindow.Tpo -c -o pepwindow.o pepwindow.c In file included from ontogetup.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ontoisobsolete.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pepwindowall.o -MD -MP -MF .deps/pepwindowall.Tpo -c -o pepwindowall.o pepwindowall.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plotcon.o -MD -MP -MF .deps/plotcon.Tpo -c -o plotcon.o plotcon.c mv -f .deps/ontoisobsolete.Tpo .deps/ontoisobsolete.Po mv -f .deps/ontogetup.Tpo .deps/ontogetup.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT plotorf.o -MD -MP -MF .deps/plotorf.Tpo -c -o plotorf.o plotorf.c In file included from freak.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from palindrome.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/freak.Tpo .deps/freak.Po mv -f .deps/palindrome.Tpo .deps/palindrome.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT polydot.o -MD -MP -MF .deps/polydot.Tpo -c -o polydot.o polydot.c In file included from patmatdb.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from pasteseq.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT preg.o -MD -MP -MF .deps/preg.Tpo -c -o preg.o preg.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT prettyplot.o -MD -MP -MF .deps/prettyplot.Tpo -c -o prettyplot.o prettyplot.c In file included from epestfind.c:25: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/patmatdb.Tpo .deps/patmatdb.Po mv -f .deps/pasteseq.Tpo .deps/pasteseq.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT prettyseq.o -MD -MP -MF .deps/prettyseq.Tpo -c -o prettyseq.o prettyseq.c In file included from fuzztran.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/fuzztran.Tpo .deps/fuzztran.Po In file included from pepinfo.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/epestfind.Tpo .deps/epestfind.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT primersearch.o -MD -MP -MF .deps/primersearch.Tpo -c -o primersearch.o primersearch.c In file included from pepdigest.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/pepinfo.Tpo .deps/pepinfo.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT printsextract.o -MD -MP -MF .deps/printsextract.Tpo -c -o printsextract.o printsextract.c In file included from pepnet.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/pepdigest.Tpo .deps/pepdigest.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT profit.o -MD -MP -MF .deps/profit.Tpo -c -o profit.o profit.c mv -f .deps/pepnet.Tpo .deps/pepnet.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT prophecy.o -MD -MP -MF .deps/prophecy.Tpo -c -o prophecy.o prophecy.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT prophet.o -MD -MP -MF .deps/prophet.Tpo -c -o prophet.o prophet.c In file included from pepwindow.c:25: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT prosextract.o -MD -MP -MF .deps/prosextract.Tpo -c -o prosextract.o prosextract.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT pscan.o -MD -MP -MF .deps/pscan.Tpo -c -o pscan.o pscan.c In file included from pepwindowall.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/pepwindow.Tpo .deps/pepwindow.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT psiphi.o -MD -MP -MF .deps/psiphi.Tpo -c -o psiphi.o psiphi.c mv -f .deps/pepwindowall.Tpo .deps/pepwindowall.Po In file included from helixturnhelix.c:27: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT rebaseextract.o -MD -MP -MF .deps/rebaseextract.Tpo -c -o rebaseextract.o rebaseextract.c mv -f .deps/helixturnhelix.Tpo .deps/helixturnhelix.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT recoder.o -MD -MP -MF .deps/recoder.Tpo -c -o recoder.o recoder.c In file included from preg.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT redata.o -MD -MP -MF .deps/redata.Tpo -c -o redata.o redata.c mv -f .deps/preg.Tpo .deps/preg.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT refseqget.o -MD -MP -MF .deps/refseqget.Tpo -c -o refseqget.o refseqget.c In file included from godef.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT remap.o -MD -MP -MF .deps/remap.Tpo -c -o remap.o remap.c In file included from est2genome.c:51: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from printsextract.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/godef.Tpo .deps/godef.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT restover.o -MD -MP -MF .deps/restover.Tpo -c -o restover.o restover.c mv -f .deps/printsextract.Tpo .deps/printsextract.Po mv -f .deps/est2genome.Tpo .deps/est2genome.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT restrict.o -MD -MP -MF .deps/restrict.Tpo -c -o restrict.o restrict.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT revseq.o -MD -MP -MF .deps/revseq.Tpo -c -o revseq.o revseq.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT seealso.o -MD -MP -MF .deps/seealso.Tpo -c -o seealso.o seealso.c In file included from prophecy.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from prosextract.c:21: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT seqcount.o -MD -MP -MF .deps/seqcount.Tpo -c -o seqcount.o seqcount.c mv -f .deps/prophecy.Tpo .deps/prophecy.Po mv -f .deps/prosextract.Tpo .deps/prosextract.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT seqmatchall.o -MD -MP -MF .deps/seqmatchall.Tpo -c -o seqmatchall.o seqmatchall.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT seqret.o -MD -MP -MF .deps/seqret.Tpo -c -o seqret.o seqret.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT seqretsetall.o -MD -MP -MF .deps/seqretsetall.Tpo -c -o seqretsetall.o seqretsetall.c In file included from psiphi.c:27: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT seqretsplit.o -MD -MP -MF .deps/seqretsplit.Tpo -c -o seqretsplit.o seqretsplit.c mv -f .deps/psiphi.Tpo .deps/psiphi.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT seqxref.o -MD -MP -MF .deps/seqxref.Tpo -c -o seqxref.o seqxref.c In file included from recoder.c:29: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT seqxrefget.o -MD -MP -MF .deps/seqxrefget.Tpo -c -o seqxrefget.o seqxrefget.c In file included from ontocount.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/recoder.Tpo .deps/recoder.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT servertell.o -MD -MP -MF .deps/servertell.Tpo -c -o servertell.o servertell.c In file included from redata.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/ontocount.Tpo .deps/ontocount.Po mv -f .deps/redata.Tpo .deps/redata.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT showalign.o -MD -MP -MF .deps/showalign.Tpo -c -o showalign.o showalign.c In file included from pepwheel.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from refseqget.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT showdb.o -MD -MP -MF .deps/showdb.Tpo -c -o showdb.o showdb.c In file included from restrict.c:37: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ontogetdown.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT showfeat.o -MD -MP -MF .deps/showfeat.Tpo -c -o showfeat.o showfeat.c mv -f .deps/refseqget.Tpo .deps/refseqget.Po mv -f .deps/restrict.Tpo .deps/restrict.Po In file included from remap.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/pepwheel.Tpo .deps/pepwheel.Po In file included from seealso.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from prettyseq.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/ontogetdown.Tpo .deps/ontogetdown.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT showorf.o -MD -MP -MF .deps/showorf.Tpo -c -o showorf.o showorf.c In file included from restover.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/remap.Tpo .deps/remap.Po In file included from seqmatchall.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from codcmp.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from seqcount.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/prettyseq.Tpo .deps/prettyseq.Po mv -f .deps/restover.Tpo .deps/restover.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT showpep.o -MD -MP -MF .deps/showpep.Tpo -c -o showpep.o showpep.c In file included from prophet.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/seqmatchall.Tpo .deps/seqmatchall.Po mv -f .deps/seqcount.Tpo .deps/seqcount.Po In file included from seqretsetall.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/seealso.Tpo .deps/seealso.Po In file included from rebaseextract.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from seqret.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/prophet.Tpo .deps/prophet.Po mv -f .deps/codcmp.Tpo .deps/codcmp.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT showseq.o -MD -MP -MF .deps/showseq.Tpo -c -o showseq.o showseq.c In file included from seqretsplit.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from mwcontam.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from seqxref.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/seqretsplit.Tpo .deps/seqretsplit.Po In file included from patmatmotifs.c:21: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/seqretsetall.Tpo .deps/seqretsetall.Po mv -f .deps/seqret.Tpo .deps/seqret.Po mv -f .deps/rebaseextract.Tpo .deps/rebaseextract.Po mv -f .deps/mwcontam.Tpo .deps/mwcontam.Po mv -f .deps/seqxref.Tpo .deps/seqxref.Po mv -f .deps/patmatmotifs.Tpo .deps/patmatmotifs.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT showserver.o -MD -MP -MF .deps/showserver.Tpo -c -o showserver.o showserver.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT shuffleseq.o -MD -MP -MF .deps/shuffleseq.Tpo -c -o shuffleseq.o shuffleseq.c In file included from seqxrefget.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from showalign.c:42: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT sigcleave.o -MD -MP -MF .deps/sigcleave.Tpo -c -o sigcleave.o sigcleave.c In file included from prettyplot.c:65: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT silent.o -MD -MP -MF .deps/silent.Tpo -c -o silent.o silent.c mv -f .deps/seqxrefget.Tpo .deps/seqxrefget.Po mv -f .deps/showalign.Tpo .deps/showalign.Po mv -f .deps/prettyplot.Tpo .deps/prettyplot.Po In file included from pepcoil.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT sirna.o -MD -MP -MF .deps/sirna.Tpo -c -o sirna.o sirna.c In file included from pepstats.c:25: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from showdb.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/pepcoil.Tpo .deps/pepcoil.Po mv -f .deps/pepstats.Tpo .deps/pepstats.Po mv -f .deps/showdb.Tpo .deps/showdb.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT sixpack.o -MD -MP -MF .deps/sixpack.Tpo -c -o sixpack.o sixpack.c In file included from polydot.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from showfeat.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT sizeseq.o -MD -MP -MF .deps/sizeseq.Tpo -c -o sizeseq.o sizeseq.c mv -f .deps/polydot.Tpo .deps/polydot.Po mv -f .deps/showfeat.Tpo .deps/showfeat.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT skipredundant.o -MD -MP -MF .deps/skipredundant.Tpo -c -o skipredundant.o skipredundant.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT skipseq.o -MD -MP -MF .deps/skipseq.Tpo -c -o skipseq.o skipseq.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT splitsource.o -MD -MP -MF .deps/splitsource.Tpo -c -o splitsource.o splitsource.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT splitter.o -MD -MP -MF .deps/splitter.Tpo -c -o splitter.o splitter.c In file included from showseq.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT stretcher.o -MD -MP -MF .deps/stretcher.Tpo -c -o stretcher.o stretcher.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT stssearch.o -MD -MP -MF .deps/stssearch.Tpo -c -o stssearch.o stssearch.c mv -f .deps/showseq.Tpo .deps/showseq.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT supermatcher.o -MD -MP -MF .deps/supermatcher.Tpo -c -o supermatcher.o supermatcher.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT syco.o -MD -MP -MF .deps/syco.Tpo -c -o syco.o syco.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT taxget.o -MD -MP -MF .deps/taxget.Tpo -c -o taxget.o taxget.c In file included from showserver.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from silent.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT taxgetdown.o -MD -MP -MF .deps/taxgetdown.Tpo -c -o taxgetdown.o taxgetdown.c mv -f .deps/silent.Tpo .deps/silent.Po mv -f .deps/showserver.Tpo .deps/showserver.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT taxgetrank.o -MD -MP -MF .deps/taxgetrank.Tpo -c -o taxgetrank.o taxgetrank.c In file included from showpep.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT taxgetspecies.o -MD -MP -MF .deps/taxgetspecies.Tpo -c -o taxgetspecies.o taxgetspecies.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT taxgetup.o -MD -MP -MF .deps/taxgetup.Tpo -c -o taxgetup.o taxgetup.c mv -f .deps/showpep.Tpo .deps/showpep.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT tcode.o -MD -MP -MF .deps/tcode.Tpo -c -o tcode.o tcode.c In file included from sixpack.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT textget.o -MD -MP -MF .deps/textget.Tpo -c -o textget.o textget.c In file included from sirna.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from jaspextract.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/sixpack.Tpo .deps/sixpack.Po In file included from sizeseq.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT textsearch.o -MD -MP -MF .deps/textsearch.Tpo -c -o textsearch.o textsearch.c In file included from ontogetcommon.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from showorf.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/sizeseq.Tpo .deps/sizeseq.Po mv -f .deps/sirna.Tpo .deps/sirna.Po mv -f .deps/ontogetcommon.Tpo .deps/ontogetcommon.Po mv -f .deps/showorf.Tpo .deps/showorf.Po mv -f .deps/jaspextract.Tpo .deps/jaspextract.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT tfextract.o -MD -MP -MF .deps/tfextract.Tpo -c -o tfextract.o tfextract.c In file included from ontotext.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from skipredundant.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT tfm.o -MD -MP -MF .deps/tfm.Tpo -c -o tfm.o tfm.c In file included from stretcher.c:25: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from plotcon.c:47: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from ontogetsibs.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from splitsource.c:25: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/ontotext.Tpo .deps/ontotext.Po mv -f .deps/stretcher.Tpo .deps/stretcher.Po mv -f .deps/skipredundant.Tpo .deps/skipredundant.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT tfscan.o -MD -MP -MF .deps/tfscan.Tpo -c -o tfscan.o tfscan.c In file included from skipseq.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from shuffleseq.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from splitter.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/splitsource.Tpo .deps/splitsource.Po mv -f .deps/skipseq.Tpo .deps/skipseq.Po mv -f .deps/splitter.Tpo .deps/splitter.Po mv -f .deps/plotcon.Tpo .deps/plotcon.Po mv -f .deps/ontogetsibs.Tpo .deps/ontogetsibs.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT tmap.o -MD -MP -MF .deps/tmap.Tpo -c -o tmap.o tmap.c In file included from syco.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/shuffleseq.Tpo .deps/shuffleseq.Po In file included from taxgetspecies.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from taxgetrank.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/syco.Tpo .deps/syco.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT tranalign.o -MD -MP -MF .deps/tranalign.Tpo -c -o tranalign.o tranalign.c In file included from taxgetup.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from tcode.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/taxgetup.Tpo .deps/taxgetup.Po In file included from primersearch.c:25: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/taxgetspecies.Tpo .deps/taxgetspecies.Po mv -f .deps/taxgetrank.Tpo .deps/taxgetrank.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT transeq.o -MD -MP -MF .deps/transeq.Tpo -c -o transeq.o transeq.c mv -f .deps/tcode.Tpo .deps/tcode.Po mv -f .deps/primersearch.Tpo .deps/primersearch.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT trimest.o -MD -MP -MF .deps/trimest.Tpo -c -o trimest.o trimest.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT trimseq.o -MD -MP -MF .deps/trimseq.Tpo -c -o trimseq.o trimseq.c In file included from tfextract.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT trimspace.o -MD -MP -MF .deps/trimspace.Tpo -c -o trimspace.o trimspace.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT twofeat.o -MD -MP -MF .deps/twofeat.Tpo -c -o twofeat.o twofeat.c mv -f .deps/tfextract.Tpo .deps/tfextract.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT union.o -MD -MP -MF .deps/union.Tpo -c -o union.o union.c In file included from sigcleave.c:28: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT urlget.o -MD -MP -MF .deps/urlget.Tpo -c -o urlget.o urlget.c mv -f .deps/sigcleave.Tpo .deps/sigcleave.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT variationget.o -MD -MP -MF .deps/variationget.Tpo -c -o variationget.o variationget.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT vectorstrip.o -MD -MP -MF .deps/vectorstrip.Tpo -c -o vectorstrip.o vectorstrip.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT water.o -MD -MP -MF .deps/water.Tpo -c -o water.o water.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT whichdb.o -MD -MP -MF .deps/whichdb.Tpo -c -o whichdb.o whichdb.c cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT wobble.o -MD -MP -MF .deps/wobble.Tpo -c -o wobble.o wobble.c In file included from servertell.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT wordcount.o -MD -MP -MF .deps/wordcount.Tpo -c -o wordcount.o wordcount.c In file included from tmap.c:50: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/servertell.Tpo .deps/servertell.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT wordfinder.o -MD -MP -MF .deps/wordfinder.Tpo -c -o wordfinder.o wordfinder.c In file included from tranalign.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/tmap.Tpo .deps/tmap.Po In file included from transeq.c:26: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT wordmatch.o -MD -MP -MF .deps/wordmatch.Tpo -c -o wordmatch.o wordmatch.c mv -f .deps/transeq.Tpo .deps/transeq.Po mv -f .deps/tranalign.Tpo .deps/tranalign.Po In file included from revseq.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT wossdata.o -MD -MP -MF .deps/wossdata.Tpo -c -o wossdata.o wossdata.c In file included from textsearch.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT wossinput.o -MD -MP -MF .deps/wossinput.Tpo -c -o wossinput.o wossinput.c mv -f .deps/revseq.Tpo .deps/revseq.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT wossname.o -MD -MP -MF .deps/wossname.Tpo -c -o wossname.o wossname.c In file included from twofeat.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/twofeat.Tpo .deps/twofeat.Po In file included from trimspace.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/textsearch.Tpo .deps/textsearch.Po In file included from union.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from trimseq.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT wossoperation.o -MD -MP -MF .deps/wossoperation.Tpo -c -o wossoperation.o wossoperation.c In file included from urlget.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/urlget.Tpo .deps/urlget.Po mv -f .deps/union.Tpo .deps/union.Po mv -f .deps/trimspace.Tpo .deps/trimspace.Po mv -f .deps/trimseq.Tpo .deps/trimseq.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT wossoutput.o -MD -MP -MF .deps/wossoutput.Tpo -c -o wossoutput.o wossoutput.c In file included from stssearch.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from trimest.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from taxget.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from plotorf.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from wobble.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from whichdb.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/stssearch.Tpo .deps/stssearch.Po In file included from wordcount.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/trimest.Tpo .deps/trimest.Po mv -f .deps/plotorf.Tpo .deps/plotorf.Po mv -f .deps/wobble.Tpo .deps/wobble.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT wossparam.o -MD -MP -MF .deps/wossparam.Tpo -c -o wossparam.o wossparam.c In file included from taxgetdown.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/wordcount.Tpo .deps/wordcount.Po mv -f .deps/whichdb.Tpo .deps/whichdb.Po mv -f .deps/taxget.Tpo .deps/taxget.Po In file included from wordfinder.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT wosstopic.o -MD -MP -MF .deps/wosstopic.Tpo -c -o wosstopic.o wosstopic.c In file included from wordmatch.c:31: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/wordfinder.Tpo .deps/wordfinder.Po mv -f .deps/taxgetdown.Tpo .deps/taxgetdown.Po cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xmlget.o -MD -MP -MF .deps/xmlget.Tpo -c -o xmlget.o xmlget.c mv -f .deps/wordmatch.Tpo .deps/wordmatch.Po In file included from wossinput.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT xmltext.o -MD -MP -MF .deps/xmltext.Tpo -c -o xmltext.o xmltext.c mv -f .deps/wossinput.Tpo .deps/wossinput.Po In file included from needleall.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. cc -DHAVE_CONFIG_H -I. -I../ajax/core -I../ajax/acd -I../ajax/ajaxdb -I../ajax/ensembl -I../ajax/graphics -I../ajax/pcre -I../ajax/expat -I../ajax/zlib -I../nucleus -I../plplot -DNO_AUTH -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -DDOC_ROOT=\"/usr/local/emboss/share/EMBOSS/doc\" -DAJ_FreeBSDLF -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -MT yank.o -MD -MP -MF .deps/yank.Tpo -c -o yank.o yank.c In file included from wossdata.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from maskfeat.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/needleall.Tpo .deps/needleall.Po mv -f .deps/wossdata.Tpo .deps/wossdata.Po mv -f .deps/maskfeat.Tpo .deps/maskfeat.Po In file included from wossname.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from wossoperation.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o aaindexextract aaindexextract.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm mv -f .deps/wossoperation.Tpo .deps/wossoperation.Po mv -f .deps/wossname.Tpo .deps/wossname.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o abiview abiview.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o acdc acdc.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o acdlog acdlog.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o acdgalaxy acdgalaxy.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm In file included from wossparam.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o acdtable acdtable.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o acdpretty acdpretty.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm In file included from wossoutput.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from merger.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from wosstopic.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o acdvalid acdvalid.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o acdtrace acdtrace.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm mv -f .deps/wossparam.Tpo .deps/wossparam.Po mv -f .deps/wossoutput.Tpo .deps/wossoutput.Po mv -f .deps/merger.Tpo .deps/merger.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o aligncopy aligncopy.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm mv -f .deps/wosstopic.Tpo .deps/wosstopic.Po In file included from xmlget.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/xmlget.Tpo .deps/xmlget.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o aligncopypair aligncopypair.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o antigenic antigenic.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o assemblyget assemblyget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm In file included from variationget.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from yank.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o backtranambig backtranambig.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o backtranseq backtranseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o banana banana.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm mv -f .deps/yank.Tpo .deps/yank.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o biosed biosed.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o btwisted btwisted.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm mv -f .deps/variationget.Tpo .deps/variationget.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o cachedbfetch cachedbfetch.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o cachedas cachedas.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o cacheensembl cacheensembl.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o cai cai.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o chaos chaos.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm In file included from textget.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o charge charge.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o checktrans checktrans.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm mv -f .deps/textget.Tpo .deps/textget.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o chips chips.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm In file included from supermatcher.c:39: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o cirdna cirdna.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o codcmp codcmp.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o codcopy codcopy.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm mv -f .deps/supermatcher.Tpo .deps/supermatcher.Po In file included from dotpath.c:25: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o compseq compseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o coderet coderet.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm mv -f .deps/dotpath.Tpo .deps/dotpath.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o cons cons.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o consambig consambig.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o cpgplot cpgplot.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o cpgreport cpgreport.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o cusp cusp.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o cutgextract cutgextract.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm In file included from tfm.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o cutseq cutseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dan dan.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm mv -f .deps/tfm.Tpo .deps/tfm.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dbiblast dbiblast.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dbifasta dbifasta.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dbiflat dbiflat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dbigcg dbigcg.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dbtell dbtell.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dbxcompress dbxcompress.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm In file included from xmltext.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dbxedam dbxedam.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm mv -f .deps/xmltext.Tpo .deps/xmltext.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dbxfasta dbxfasta.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dbxflat dbxflat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm In file included from water.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dbxobo dbxobo.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dbxgcg dbxgcg.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dbxreport dbxreport.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm mv -f .deps/water.Tpo .deps/water.Po In file included from drget.c:30: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/drget.Tpo .deps/drget.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dbxresource dbxresource.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dbxstat dbxstat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dbxtax dbxtax.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm In file included from tfscan.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dbxuncompress dbxuncompress.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o degapseq degapseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm mv -f .deps/tfscan.Tpo .deps/tfscan.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o density density.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o descseq descseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm In file included from makeprotseq.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. In file included from findkm.c:24: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/makeprotseq.Tpo .deps/makeprotseq.Po mv -f .deps/findkm.Tpo .deps/findkm.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o diffseq diffseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o distmat distmat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm In file included from cacheebeyesearch.c:21: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/cacheebeyesearch.Tpo .deps/cacheebeyesearch.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dotmatcher dotmatcher.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm In file included from profit.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/profit.Tpo .deps/profit.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dotpath dotpath.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm In file included from pscan.c:22: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/pscan.Tpo .deps/pscan.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dottup dottup.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm In file included from vectorstrip.c:23: In file included from ../nucleus/emboss.h:30: In file included from ../ajax/core/ajax.h:33: ../ajax/core/ajdefine.h:60:9: warning: '__deprecated' macro redefined [-Wmacro-redefined] 60 | #define __deprecated __attribute__((deprecated)) | ^ /usr/include/sys/cdefs.h:157:9: note: previous definition is here 157 | #define __deprecated __attribute__((__deprecated__)) | ^ 1 warning generated. mv -f .deps/vectorstrip.Tpo .deps/vectorstrip.Po /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o dreg dreg.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/acdlog acdlog.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/acdvalid acdvalid.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/acdtable acdtable.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/acdgalaxy acdgalaxy.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/aligncopypair aligncopypair.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/acdpretty acdpretty.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/aaindexextract aaindexextract.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/aligncopy aligncopy.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/checktrans checktrans.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/biosed biosed.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib 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-Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/coderet coderet.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/codcopy codcopy.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/cutseq cutseq.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/cirdna cirdna.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dbxcompress dbxcompress.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dbxuncompress dbxuncompress.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/cpgreport cpgreport.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/cpgplot cpgplot.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dbtell dbtell.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dbxgcg dbxgcg.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dbxedam dbxedam.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dbxresource dbxresource.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dbiflat dbiflat.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dbxflat dbxflat.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dbxstat dbxstat.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dbxobo dbxobo.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dbigcg dbigcg.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dbxfasta dbxfasta.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/degapseq degapseq.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dbxtax dbxtax.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o drfinddata drfinddata.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/distmat distmat.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dbxreport dbxreport.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o drfindformat drfindformat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o drfindresource drfindresource.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o drfindid drfindid.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o drget drget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o drtext drtext.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dotmatcher dotmatcher.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o edamdef edamdef.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o edamhasinput edamhasinput.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o edamhasoutput edamhasoutput.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o edamisformat edamisformat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o edamisid edamisid.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o edamname edamname.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o edialign edialign.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o embossupdate embossupdate.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o embossdata embossdata.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o einverted einverted.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o embossversion embossversion.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/diffseq diffseq.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o emma emma.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o emowse emowse.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o entret entret.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o epestfind epestfind.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o eprimer3 eprimer3.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o equicktandem equicktandem.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o eprimer32 eprimer32.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o est2genome est2genome.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o etandem etandem.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o extractalign extractalign.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o extractfeat extractfeat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o extractseq extractseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o featcopy featcopy.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o featmerge featmerge.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o featreport featreport.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o feattext feattext.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o findkm findkm.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o freak freak.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o fuzznuc fuzznuc.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o fuzzpro fuzzpro.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dottup dottup.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o fuzztran fuzztran.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o garnier garnier.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dotpath dotpath.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o geecee geecee.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o getorf getorf.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o goname goname.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o godef godef.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o helixturnhelix helixturnhelix.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o hmoment hmoment.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o iep iep.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o infoalign infoalign.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o infoassembly infoassembly.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o inforesidue inforesidue.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o infoseq infoseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o infobase infobase.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o isochore isochore.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o jaspextract jaspextract.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o jaspscan jaspscan.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o jembossctl jembossctl.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o lindna lindna.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o listor listor.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o makenucseq makenucseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/dreg dreg.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o makeprotseq makeprotseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o marscan marscan.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o maskambignuc maskambignuc.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/drget drget.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o maskambigprot maskambigprot.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o maskfeat maskfeat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/drfindformat drfindformat.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 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-Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/drtext drtext.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/edamname edamname.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so 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-fno-strict-aliasing -O2 -I/usr/local/include -o .libs/edamhasinput edamhasinput.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/drfindid drfindid.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so 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../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/eprimer3 eprimer3.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/edamisformat edamisformat.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/est2genome est2genome.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/edamisid edamisid.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/edialign edialign.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/epestfind epestfind.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/embossversion embossversion.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o maskseq maskseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/emma emma.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/equicktandem equicktandem.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/eprimer32 eprimer32.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/einverted einverted.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong 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-DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/inforesidue inforesidue.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/godef godef.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/infobase infobase.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/hmoment hmoment.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o matcher matcher.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/lindna lindna.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/jaspscan jaspscan.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o megamerger megamerger.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o merger merger.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/listor listor.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o msbar msbar.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o mwcontam mwcontam.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o mwfilter mwfilter.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o needleall needleall.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o needle needle.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o newcpgreport newcpgreport.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o newcpgseek newcpgseek.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o newseq newseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o nohtml nohtml.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/makenucseq makenucseq.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o noreturn noreturn.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o nospace nospace.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o notab notab.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o notseq notseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o octanol octanol.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o nthseqset nthseqset.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o nthseq nthseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o oddcomp oddcomp.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o ontocount ontocount.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o ontoget ontoget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o ontogetcommon ontogetcommon.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o ontogetobsolete ontogetobsolete.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o ontogetdown ontogetdown.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o ontogetroot ontogetroot.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o ontogetsibs ontogetsibs.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o ontogetup ontogetup.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o ontoisobsolete ontoisobsolete.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o ontotext ontotext.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o pasteseq pasteseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o patmatdb patmatdb.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o palindrome palindrome.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o patmatmotifs patmatmotifs.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o pepcoil pepcoil.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/makeprotseq makeprotseq.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/marscan marscan.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o pepdigest pepdigest.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o pepinfo pepinfo.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o pepnet pepnet.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o pepstats pepstats.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o pepwheel pepwheel.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o pepwindow pepwindow.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o pepwindowall pepwindowall.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o plotcon plotcon.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o plotorf plotorf.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o polydot polydot.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o preg preg.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o prettyplot prettyplot.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/maskambignuc maskambignuc.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o prettyseq prettyseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o printsextract printsextract.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o primersearch primersearch.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o profit profit.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/maskambigprot maskambigprot.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o prophecy prophecy.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/maskfeat maskfeat.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o prophet prophet.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o prosextract prosextract.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o pscan pscan.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o psiphi psiphi.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o rebaseextract rebaseextract.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o recoder recoder.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/maskseq maskseq.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o redata redata.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o refseqget refseqget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/matcher matcher.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/mwfilter mwfilter.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/mwcontam mwcontam.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/megamerger megamerger.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/msbar msbar.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/nospace nospace.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/needleall needleall.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/merger merger.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/ontoget ontoget.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/needle needle.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/nohtml nohtml.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/nthseq nthseq.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/oddcomp oddcomp.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o remap remap.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/pepcoil pepcoil.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/notab notab.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/ontogetsibs ontogetsibs.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/octanol octanol.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/newcpgseek newcpgseek.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 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-I/usr/local/include -o .libs/ontogetup ontogetup.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/ontogetcommon ontogetcommon.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so 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-fno-strict-aliasing -O2 -I/usr/local/include -o .libs/ontoisobsolete ontoisobsolete.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/pepwheel pepwheel.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/plotorf plotorf.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/polydot polydot.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/plotcon plotcon.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/prettyseq prettyseq.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o revseq revseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/prettyplot prettyplot.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/preg preg.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o seealso seealso.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/printsextract printsextract.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/profit profit.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/prosextract prosextract.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o seqcount seqcount.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o seqmatchall seqmatchall.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o seqret seqret.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o seqretsetall seqretsetall.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o seqretsplit seqretsplit.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o seqxref seqxref.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/primersearch primersearch.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o seqxrefget seqxrefget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o servertell servertell.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/prophecy prophecy.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o showdb showdb.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o showalign showalign.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o showfeat showfeat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o showpep showpep.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o showorf showorf.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o showseq showseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/psiphi psiphi.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o showserver showserver.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/prophet prophet.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o sigcleave sigcleave.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o shuffleseq shuffleseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o sirna sirna.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o sixpack sixpack.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/pscan pscan.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o silent silent.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o sizeseq sizeseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o skipredundant skipredundant.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o skipseq skipseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o splitsource splitsource.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o splitter splitter.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/rebaseextract rebaseextract.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o stretcher stretcher.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o stssearch stssearch.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o supermatcher supermatcher.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o syco syco.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o taxget taxget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o taxgetrank taxgetrank.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o taxgetdown taxgetdown.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o taxgetspecies taxgetspecies.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o taxgetup taxgetup.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o tcode tcode.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o textget textget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o textsearch textsearch.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/recoder recoder.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o tfextract tfextract.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o tfm tfm.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o tfscan tfscan.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/redata redata.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o tmap tmap.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o tranalign tranalign.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o transeq transeq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o trimest trimest.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o trimseq trimseq.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o trimspace trimspace.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/refseqget refseqget.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o twofeat twofeat.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o union union.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o urlget urlget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/remap remap.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o variationget variationget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/restover restover.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o vectorstrip vectorstrip.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/restrict restrict.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o water water.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o whichdb whichdb.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o wobble wobble.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o wordcount wordcount.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/revseq revseq.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/seealso seealso.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o wordfinder wordfinder.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/seqcount seqcount.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/seqretsplit seqretsplit.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/seqxrefget seqxrefget.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/showalign showalign.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/seqretsetall seqretsetall.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/showseq showseq.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o wordmatch wordmatch.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/servertell servertell.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/seqxref seqxref.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o wossdata wossdata.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/seqret seqret.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/sigcleave sigcleave.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so 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-Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/showfeat showfeat.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/showserver showserver.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so 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-DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/showdb showdb.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/shuffleseq shuffleseq.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/sirna sirna.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/splitsource splitsource.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/sixpack sixpack.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/skipseq skipseq.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/supermatcher supermatcher.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o wossinput wossinput.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/taxgetdown taxgetdown.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/taxgetup taxgetup.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/taxgetspecies taxgetspecies.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/skipredundant skipredundant.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/taxget taxget.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/splitter splitter.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/tfextract tfextract.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/stssearch stssearch.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o wossname wossname.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/syco syco.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/textsearch textsearch.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/sizeseq sizeseq.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/stretcher stretcher.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/tfm tfm.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/tcode tcode.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/textget textget.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/taxgetrank taxgetrank.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o wossoperation wossoperation.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/trimseq trimseq.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o wossoutput wossoutput.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/tranalign tranalign.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o wossparam wossparam.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/trimest trimest.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o wosstopic wosstopic.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/tmap tmap.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/variationget variationget.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/tfscan tfscan.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o xmlget xmlget.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o xmltext xmltext.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o yank yank.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/twofeat twofeat.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/trimspace trimspace.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib /bin/sh ../libtool --tag=CC --mode=link cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -L/usr/local/lib -L/usr/local/lib -o cacheebeyesearch cacheebeyesearch.o ../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -L/usr/local/lib -lX11 -lm -lgd -lpng -lz -lm libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/union union.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/transeq transeq.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/whichdb whichdb.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/vectorstrip vectorstrip.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/urlget urlget.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/water water.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/wobble wobble.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/wordfinder wordfinder.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/wordmatch wordmatch.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/wordcount wordcount.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/wossdata wossdata.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/wossinput wossinput.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/wossname wossname.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/wossoperation wossoperation.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/wossoutput wossoutput.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/wosstopic wosstopic.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/wossparam wossparam.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/xmltext xmltext.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/xmlget xmlget.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/yank yank.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib libtool: link: cc -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -O2 -I/usr/local/include -o .libs/cacheebeyesearch cacheebeyesearch.o -L/usr/local/lib ../nucleus/.libs/libnucleus.so ../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so ../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so ../ajax/core/.libs/libajax.so ../ajax/zlib/.libs/libezlib.so ../ajax/expat/.libs/libeexpat.so ../ajax/pcre/.libs/libepcre.so ../plplot/.libs/libeplplot.so -lX11 /usr/local/lib/libgd.so -lpq -lpng -lz -lm -Wl,-rpath -Wl,/usr/local/emboss/lib -Wl,-rpath -Wl,/usr/local/lib gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' Making all in test gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' Making all in data gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/data' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/data' Making all in embl gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/embl' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/embl' Making all in genbank gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/genbank' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/genbank' Making all in pir gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/pir' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/pir' Making all in swiss gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swiss' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swiss' Making all in swnew gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swnew' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swnew' Making all in testdb gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/testdb' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/testdb' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' gmake[2]: Nothing to be done for 'all-am'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' Making all in doc gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' Making all in manuals gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/manuals' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/manuals' Making all in programs gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' Making all in html 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Nothing to be done for 'all'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib/axis' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' gmake[3]: Nothing to be done for 'all-am'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' Making all in resources gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources' Making all in utils gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/utils' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/utils' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' gmake[2]: Nothing to be done for 'all-am'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' gmake[1]: Nothing to be done for 'all-am'. gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' cc -DEMBOSS_PREFIX="\"/usr/local/emboss\"" /usr/ports/biology/emboss/files/emboss.c -o /wrkdirs/usr/ports/biology/emboss/work/emboss =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> emboss-6.6.0_7 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> emboss-6.6.0_7 depends on file: /usr/local/libdata/pkgconfig/xpm.pc - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for emboss-6.6.0_7 ===> Generating temporary packing list if test -z 'strip'; then \ /usr/local/bin/gmake INSTALL_PROGRAM="/bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s" \ install_sh_PROGRAM="/bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s" INSTALL_STRIP_FLAG=-s \ install; \ else \ /usr/local/bin/gmake INSTALL_PROGRAM="/bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s" \ install_sh_PROGRAM="/bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s" INSTALL_STRIP_FLAG=-s \ "INSTALL_PROGRAM_ENV=STRIPPROG='strip'" install; \ fi gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' Making install in plplot gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot' Making install in lib gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot/lib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot/lib' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS' install -m 0644 plstnd5.fnt plxtnd5.fnt '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot/lib' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot/lib' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c -s libeplplot.la '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' libtool: install: /usr/bin/install -c .libs/libeplplot.so.3.2.7 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libeplplot.so.3.2.7 libtool: install: strip --strip-unneeded /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libeplplot.so.3.2.7 libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libeplplot.so.3.2.7 libeplplot.so.3 || { rm -f libeplplot.so.3 && ln -s libeplplot.so.3.2.7 libeplplot.so.3; }; }) libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libeplplot.so.3.2.7 libeplplot.so || { rm -f libeplplot.so && ln -s libeplplot.so.3.2.7 libeplplot.so; }; }) libtool: install: /usr/bin/install -c .libs/libeplplot.lai /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libeplplot.la libtool: install: /usr/bin/install -c .libs/libeplplot.a /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libeplplot.a libtool: install: strip --strip-debug /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libeplplot.a libtool: install: chmod 644 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libeplplot.a libtool: install: ranlib /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libeplplot.a libtool: install: warning: remember to run `libtool --finish /usr/local/emboss/lib' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include/eplplot' install -m 0644 drivers.h pdf.h plcore.h plevent.h plplotP.h plxwd.h metadefs.h plConfig.h pldebug.h plplot.h plstrm.h plDevs.h disptab.h pldll.h plhershey-unicode.h ps.h plunicode-type1.h plfci-type1.h '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include/eplplot' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot' Making install in ajax gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' Making install in pcre gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/pcre' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/pcre' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c -s libepcre.la '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' libtool: install: /usr/bin/install -c .libs/libepcre.so.7.0.9 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libepcre.so.7.0.9 libtool: install: strip --strip-unneeded /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libepcre.so.7.0.9 libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libepcre.so.7.0.9 libepcre.so.7 || { rm -f libepcre.so.7 && ln -s libepcre.so.7.0.9 libepcre.so.7; }; }) libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libepcre.so.7.0.9 libepcre.so || { rm -f libepcre.so && ln -s libepcre.so.7.0.9 libepcre.so; }; }) libtool: install: /usr/bin/install -c .libs/libepcre.lai /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libepcre.la libtool: install: /usr/bin/install -c .libs/libepcre.a /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libepcre.a libtool: install: strip --strip-debug /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libepcre.a libtool: install: chmod 644 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libepcre.a libtool: install: ranlib /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libepcre.a libtool: install: warning: remember to run `libtool --finish /usr/local/emboss/lib' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include/epcre' install -m 0644 pcre.h pcre_config.h pcreemboss.h pcre_internal.h pcreposix.h pcre_printint.src ucp.h '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include/epcre' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/pcre' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/pcre' Making install in expat gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/expat' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/expat' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c -s libeexpat.la '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' libtool: install: /usr/bin/install -c .libs/libeexpat.so.1.1.0 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libeexpat.so.1.1.0 libtool: install: strip --strip-unneeded /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libeexpat.so.1.1.0 libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libeexpat.so.1.1.0 libeexpat.so.1 || { rm -f libeexpat.so.1 && ln -s libeexpat.so.1.1.0 libeexpat.so.1; }; }) libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libeexpat.so.1.1.0 libeexpat.so || { rm -f libeexpat.so && ln -s libeexpat.so.1.1.0 libeexpat.so; }; }) libtool: install: /usr/bin/install -c .libs/libeexpat.lai /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libeexpat.la libtool: install: /usr/bin/install -c .libs/libeexpat.a /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libeexpat.a libtool: install: strip --strip-debug /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libeexpat.a libtool: install: chmod 644 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libeexpat.a libtool: install: ranlib /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libeexpat.a libtool: install: warning: remember to run `libtool --finish /usr/local/emboss/lib' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include/eexpat' install -m 0644 expat_config.h ascii.h asciitab.h iasciitab.h internal.h latin1tab.h nametab.h utf8tab.h xmlrole.h xmltok.h xmltok_impl.h expat.h expat_external.h expatemboss.h '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include/eexpat' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/expat' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/expat' Making install in zlib gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/zlib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/zlib' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c -s libezlib.la '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' libtool: install: /usr/bin/install -c .libs/libezlib.so.1.1.0 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libezlib.so.1.1.0 libtool: install: strip --strip-unneeded /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libezlib.so.1.1.0 libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libezlib.so.1.1.0 libezlib.so.1 || { rm -f libezlib.so.1 && ln -s libezlib.so.1.1.0 libezlib.so.1; }; }) libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libezlib.so.1.1.0 libezlib.so || { rm -f libezlib.so && ln -s libezlib.so.1.1.0 libezlib.so; }; }) libtool: install: /usr/bin/install -c .libs/libezlib.lai /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libezlib.la libtool: install: /usr/bin/install -c .libs/libezlib.a /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libezlib.a libtool: install: strip --strip-debug /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libezlib.a libtool: install: chmod 644 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libezlib.a libtool: install: ranlib /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libezlib.a libtool: install: warning: remember to run `libtool --finish /usr/local/emboss/lib' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include/ezlib' install -m 0644 crc32.h deflate.h gzguts.h inffast.h inffixed.h inflate.h inftrees.h trees.h zconf.h zlibemboss.h zlib.h zutil.h '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include/ezlib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/zlib' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/zlib' Making install in core gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c -s libajax.la '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' libtool: install: /usr/bin/install -c .libs/libajax.so.6.0.5 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajax.so.6.0.5 libtool: install: strip --strip-unneeded /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajax.so.6.0.5 libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libajax.so.6.0.5 libajax.so.6 || { rm -f libajax.so.6 && ln -s libajax.so.6.0.5 libajax.so.6; }; }) libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libajax.so.6.0.5 libajax.so || { rm -f libajax.so && ln -s libajax.so.6.0.5 libajax.so; }; }) libtool: install: /usr/bin/install -c .libs/libajax.lai /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajax.la libtool: install: /usr/bin/install -c .libs/libajax.a /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajax.a libtool: install: strip --strip-debug /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajax.a libtool: install: chmod 644 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajax.a libtool: install: ranlib /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajax.a libtool: install: warning: remember to run `libtool --finish /usr/local/emboss/lib' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include' install -m 0644 ajax.h ajarch.h ajdefine.h ajalign.h ajarr.h ajassem.h ajassemdata.h ajassemread.h ajassemwrite.h ajassert.h ajbamindex.h ajbase.h ajcall.h ajcigar.h ajcod.h ajdan.h ajdmx.h ajdom.h ajdomain.h ajexcept.h ajfeat.h ajfeatdata.h ajfeatread.h ajfeatwrite.h ajfile.h ajfiledata.h ajfileio.h ajfmt.h ajftp.h ajhttp.h ajindex.h ajjava.h ajlib.h ajlist.h ajmath.h ajmatrices.h ajmem.h ajmess.h ajnam.h ajnexus.h '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include' install -m 0644 ajobo.h ajobodata.h ajoboread.h ajobowrite.h ajpat.h ajpdb.h ajpdbio.h ajphylo.h ajquery.h ajquerydata.h ajrange.h ajreg.h ajreport.h ajrefseq.h ajrefseqdata.h ajrefseqread.h ajrefseqwrite.h ajresource.h ajresourcedata.h ajresourceread.h ajresourcewrite.h ajseq.h ajseqabi.h ajseqbam.h ajseqdata.h ajseqread.h ajseqtype.h ajseqwrite.h ajsort.h ajsql.h ajstr.h ajsys.h ajtable.h ajtagval.h ajtax.h ajtaxdata.h ajtaxread.h ajtaxwrite.h ajtext.h ajtextdata.h '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include' install -m 0644 ajtextread.h ajtextwrite.h ajtime.h ajtranslate.h ajtree.h ajurl.h ajurldata.h ajurlread.h ajurlwrite.h ajutil.h ajvar.h ajvarbcf.h ajvardata.h ajvarread.h ajvarwrite.h ajvector.h ajxml.h ajxmldata.h ajxmlread.h ajxmlwrite.h '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' Making install in graphics gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/graphics' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/graphics' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c -s libajaxg.la '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' libtool: install: /usr/bin/install -c .libs/libajaxg.so.6.0.5 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajaxg.so.6.0.5 libtool: install: strip --strip-unneeded /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajaxg.so.6.0.5 libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libajaxg.so.6.0.5 libajaxg.so.6 || { rm -f libajaxg.so.6 && ln -s libajaxg.so.6.0.5 libajaxg.so.6; }; }) libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libajaxg.so.6.0.5 libajaxg.so || { rm -f libajaxg.so && ln -s libajaxg.so.6.0.5 libajaxg.so; }; }) libtool: install: /usr/bin/install -c .libs/libajaxg.lai /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajaxg.la libtool: install: /usr/bin/install -c .libs/libajaxg.a /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajaxg.a libtool: install: strip --strip-debug /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajaxg.a libtool: install: chmod 644 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajaxg.a libtool: install: ranlib /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajaxg.a libtool: install: warning: remember to run `libtool --finish /usr/local/emboss/lib' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include' install -m 0644 ajgraph.h ajgraphstruct.h ajhist.h '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/graphics' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/graphics' Making install in ensembl gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/ensembl' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/ensembl' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c -s libensembl.la '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' libtool: install: /usr/bin/install -c .libs/libensembl.so.6.0.5 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libensembl.so.6.0.5 libtool: install: strip --strip-unneeded /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libensembl.so.6.0.5 libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libensembl.so.6.0.5 libensembl.so.6 || { rm -f libensembl.so.6 && ln -s libensembl.so.6.0.5 libensembl.so.6; }; }) libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libensembl.so.6.0.5 libensembl.so || { rm -f libensembl.so && ln -s libensembl.so.6.0.5 libensembl.so; }; }) libtool: install: /usr/bin/install -c .libs/libensembl.lai /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libensembl.la libtool: install: /usr/bin/install -c .libs/libensembl.a /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libensembl.a libtool: install: strip --strip-debug /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libensembl.a libtool: install: chmod 644 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libensembl.a libtool: install: ranlib /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libensembl.a libtool: install: warning: remember to run `libtool --finish /usr/local/emboss/lib' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include' install -m 0644 ensalign.h ensanalysis.h ensassemblyexception.h ensassembly.h ensassemblymapper.h ensattribute.h ensbaseadaptor.h enscache.h enscoordsystem.h ensdatabaseadaptor.h ensdatabaseconnection.h ensdatabaseentry.h ensdata.h ensdensity.h ensditag.h ensembl.h ensexon.h ensexternaldatabase.h ensfeature.h ensgene.h ensgvallele.h ensgvattribute.h ensgvbaseadaptor.h ensgvdata.h ensgvdatabaseadaptor.h ensgvgenotype.h ensgvindividual.h ensgvpopulation.h ensgvsample.h ensgvsource.h ensgvsynonym.h ensgvvariation.h ensintron.h enskaryotype.h ensmapper.h ensmarker.h ensmetacoordinate.h ensmetainformation.h ensmiscellaneous.h ensontology.h '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include' install -m 0644 ensoperon.h ensprediction.h ensprojectionsegment.h ensprotein.h ensqc.h ensqcalignment.h ensqcdasfeature.h ensqcdatabase.h ensqcsequence.h ensqcsubmission.h ensqcvariation.h ensregistry.h ensrepeat.h ensseqregion.h enssequenceedit.h enssequence.h enssimple.h ensslice.h enssoftware.h ensstorable.h enstable.h enstranscript.h enstranslation.h ensutility.h ensvariation.h '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/ensembl' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/ensembl' Making install in ajaxdb gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/ajaxdb' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/ajaxdb' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c -s libajaxdb.la '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' libtool: install: /usr/bin/install -c .libs/libajaxdb.so.6.0.5 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajaxdb.so.6.0.5 libtool: install: strip --strip-unneeded /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajaxdb.so.6.0.5 libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libajaxdb.so.6.0.5 libajaxdb.so.6 || { rm -f libajaxdb.so.6 && ln -s libajaxdb.so.6.0.5 libajaxdb.so.6; }; }) libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libajaxdb.so.6.0.5 libajaxdb.so || { rm -f libajaxdb.so && ln -s libajaxdb.so.6.0.5 libajaxdb.so; }; }) libtool: install: /usr/bin/install -c .libs/libajaxdb.lai /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajaxdb.la libtool: install: /usr/bin/install -c .libs/libajaxdb.a /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajaxdb.a libtool: install: strip --strip-debug /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajaxdb.a libtool: install: chmod 644 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajaxdb.a libtool: install: ranlib /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libajaxdb.a libtool: install: warning: remember to run `libtool --finish /usr/local/emboss/lib' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include' install -m 0644 ajassemdb.h ajdas.h ajfeatdb.h ajmart.h ajobodb.h ajrefseqdb.h ajresourcedb.h ajseqdb.h ajsoap.h ajtaxdb.h ajtextdb.h ajurldb.h ajvardb.h ajxmldb.h '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/ajaxdb' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/ajaxdb' Making install in acd gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/acd' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/acd' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' /bin/sh ../../libtool --mode=install /usr/bin/install -c -s libacd.la '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' libtool: install: /usr/bin/install -c .libs/libacd.so.6.0.5 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libacd.so.6.0.5 libtool: install: strip --strip-unneeded /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libacd.so.6.0.5 libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libacd.so.6.0.5 libacd.so.6 || { rm -f libacd.so.6 && ln -s libacd.so.6.0.5 libacd.so.6; }; }) libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libacd.so.6.0.5 libacd.so || { rm -f libacd.so && ln -s libacd.so.6.0.5 libacd.so; }; }) libtool: install: /usr/bin/install -c .libs/libacd.lai /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libacd.la libtool: install: /usr/bin/install -c .libs/libacd.a /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libacd.a libtool: install: strip --strip-debug /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libacd.a libtool: install: chmod 644 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libacd.a libtool: install: ranlib /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libacd.a libtool: install: warning: remember to run `libtool --finish /usr/local/emboss/lib' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include' install -m 0644 ajacd.h '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/acd' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/acd' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' Making install in nucleus gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/nucleus' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/nucleus' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c -s libnucleus.la '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib' libtool: install: /usr/bin/install -c .libs/libnucleus.so.6.0.5 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libnucleus.so.6.0.5 libtool: install: strip --strip-unneeded /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libnucleus.so.6.0.5 libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libnucleus.so.6.0.5 libnucleus.so.6 || { rm -f libnucleus.so.6 && ln -s libnucleus.so.6.0.5 libnucleus.so.6; }; }) libtool: install: (cd /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib && { ln -s -f libnucleus.so.6.0.5 libnucleus.so || { rm -f libnucleus.so && ln -s libnucleus.so.6.0.5 libnucleus.so; }; }) libtool: install: /usr/bin/install -c .libs/libnucleus.lai /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libnucleus.la libtool: install: /usr/bin/install -c .libs/libnucleus.a /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libnucleus.a libtool: install: strip --strip-debug /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libnucleus.a libtool: install: chmod 644 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libnucleus.a libtool: install: ranlib /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/lib/libnucleus.a libtool: install: warning: remember to run `libtool --finish /usr/local/emboss/lib' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include' install -m 0644 emboss.h embaln.h embcom.h embcons.h embdata.h embdbi.h embdmx.h embdomain.h embest.h embexit.h embgroup.h embiep.h embindex.h embinit.h embmat.h embmisc.h embmol.h embnmer.h embpat.h embpatlist.h embprop.h embpdb.h embread.h embsig.h embshow.h embword.h '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/include' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/nucleus' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/nucleus' Making install in emboss gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' Making install in acd gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/acd' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/acd' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/acd' install -m 0644 aaindexextract.acd abiview.acd acdc.acd acdpretty.acd acdtable.acd acdtrace.acd acdvalid.acd aligncopy.acd aligncopypair.acd antigenic.acd assemblyget.acd backtranambig.acd backtranseq.acd banana.acd biosed.acd btwisted.acd cachedas.acd cachedbfetch.acd cacheebeyesearch.acd cacheensembl.acd cai.acd chaos.acd charge.acd checktrans.acd chips.acd cirdna.acd codcmp.acd codcopy.acd coderet.acd compseq.acd cons.acd consambig.acd cpgplot.acd cpgreport.acd cusp.acd cutgextract.acd cutseq.acd dan.acd dbiblast.acd dbifasta.acd '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/acd' install -m 0644 dbiflat.acd dbigcg.acd dbtell.acd dbxcompress.acd dbxedam.acd dbxfasta.acd dbxflat.acd dbxgcg.acd dbxobo.acd dbxreport.acd dbxresource.acd dbxstat.acd dbxtax.acd dbxuncompress.acd degapseq.acd density.acd descseq.acd diffseq.acd digest.acd distmat.acd dotmatcher.acd dotpath.acd dottup.acd dreg.acd drfinddata.acd drfindformat.acd drfindid.acd drfindresource.acd drget.acd drtext.acd edamdef.acd edamhasinput.acd edamhasoutput.acd edamisformat.acd edamisid.acd edamname.acd edialign.acd einverted.acd embossdata.acd embossupdate.acd '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/acd' install -m 0644 embossversion.acd emma.acd emowse.acd entret.acd epestfind.acd eprimer3.acd eprimer32.acd equicktandem.acd est2genome.acd etandem.acd extractalign.acd extractfeat.acd extractseq.acd featcopy.acd featmerge.acd featreport.acd feattext.acd findkm.acd freak.acd fuzznuc.acd fuzzpro.acd fuzztran.acd garnier.acd geecee.acd getorf.acd godef.acd goname.acd helixturnhelix.acd hmoment.acd iep.acd infoalign.acd infoassembly.acd infobase.acd inforesidue.acd infoseq.acd isochore.acd jaspextract.acd jaspscan.acd lindna.acd listor.acd '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/acd' install -m 0644 makenucseq.acd makeprotseq.acd marscan.acd maskambignuc.acd maskambigprot.acd maskfeat.acd maskseq.acd matcher.acd megamerger.acd merger.acd msbar.acd mwcontam.acd mwfilter.acd needle.acd needleall.acd newcpgreport.acd newcpgseek.acd newseq.acd nohtml.acd noreturn.acd nospace.acd notab.acd notseq.acd nthseq.acd nthseqset.acd octanol.acd oddcomp.acd ontocount.acd ontoget.acd ontogetcommon.acd ontogetdown.acd ontogetobsolete.acd ontogetroot.acd ontogetsibs.acd ontogetup.acd ontoisobsolete.acd ontotext.acd palindrome.acd pasteseq.acd patmatdb.acd '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/acd' install -m 0644 patmatmotifs.acd pepcoil.acd pepdigest.acd pepinfo.acd pepnet.acd pepstats.acd pepwheel.acd pepwindow.acd pepwindowall.acd plotcon.acd plotorf.acd polydot.acd preg.acd prettyplot.acd prettyseq.acd primersearch.acd printsextract.acd profit.acd prophecy.acd prophet.acd prosextract.acd pscan.acd psiphi.acd rebaseextract.acd recoder.acd redata.acd refseqget.acd remap.acd restover.acd restrict.acd revseq.acd seealso.acd seqcount.acd seqmatchall.acd seqret.acd seqretsetall.acd seqretsplit.acd seqxref.acd seqxrefget.acd servertell.acd '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/acd' install -m 0644 showalign.acd showdb.acd showfeat.acd showorf.acd showpep.acd showseq.acd showserver.acd shuffleseq.acd sigcleave.acd silent.acd sirna.acd sixpack.acd sizeseq.acd skipredundant.acd skipseq.acd splitsource.acd splitter.acd stretcher.acd stssearch.acd supermatcher.acd syco.acd taxget.acd taxgetdown.acd taxgetrank.acd taxgetspecies.acd taxgetup.acd tcode.acd textget.acd textsearch.acd tfextract.acd tfm.acd tfscan.acd tmap.acd tranalign.acd transeq.acd trimest.acd trimseq.acd trimspace.acd twofeat.acd union.acd '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/acd' install -m 0644 urlget.acd variationget.acd vectorstrip.acd water.acd whichdb.acd wobble.acd wordcount.acd wordfinder.acd wordmatch.acd wossdata.acd wossinput.acd wossname.acd wossoperation.acd wossoutput.acd wossparam.acd wosstopic.acd xmlget.acd xmltext.acd yank.acd '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/acd' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/acd' install -m 0644 codes.english groups.standard keywords.standard knowntypes.standard sections.standard variables.standard '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/acd' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/acd' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/acd' Making install in data gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' Making install in AAINDEX gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/AAINDEX' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/AAINDEX' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/AAINDEX' install -m 0644 dummyfile '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/AAINDEX' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/AAINDEX' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/AAINDEX' Making install in CODONS gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/CODONS' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/CODONS' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/CODONS' install -m 0644 Cut.index Eacica.cut Eagrtu.cut Eanasp.cut Earath.cut Eazovi.cut Ebacme.cut Ebacst.cut Ebacsu.cut Ebacsu_high.cut Ebommo.cut Ebovin.cut Ebpphx.cut Ebraja.cut Ebrana.cut Ebrare.cut Ecaeel.cut Ecanal.cut Ecanfa.cut Ecaucr.cut Echick.cut Echlre.cut Echltr.cut Ecloab.cut Ecrigr.cut Ecyapa.cut Edayhoff.cut Edicdi.cut Edicdi_high.cut Edrome.cut Edrome_high.cut Eecoli.cut Eecoli_high.cut Eemeni.cut Eemeni_mit.cut Eemeni_high.cut Eerwct.cut Ehaein.cut Ehalma.cut Ehalsa.cut '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/CODONS' install -m 0644 Ehorvu.cut Ehuman.cut Eklepn.cut Eklula.cut Elacdl.cut Elyces.cut Emacfa.cut Emaize.cut Emaize_chl.cut Emammal_high.cut Emanse.cut Emarpo_chl.cut Emedsa.cut Emetth.cut Emouse.cut Emyctu.cut Eneigo.cut Eneucr.cut Eoncmy.cut Eorysa.cut Eorysa_chl.cut Epea.cut Epethy.cut Ephavu.cut Epig.cut Eplafa.cut Eprovu.cut Epseae.cut Epsepu.cut Epsesm.cut Erabit.cut Erat.cut Erhile.cut Erhime.cut Erhoca.cut Erhosh.cut Esalsa.cut Esalty.cut Eschma.cut Eschpo.cut '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/CODONS' install -m 0644 Eschpo_cai.cut Eschpo_high.cut Eserma.cut Esheep.cut Esoltu.cut Esoybn.cut Espiol.cut Estaau.cut Estrco.cut Estrmu.cut Estrpn.cut Estrpu.cut Esyncy.cut Esynco.cut Etetth.cut Etheth.cut Etobac.cut Etobac_chl.cut Etrybr.cut Etrycr.cut Evibch.cut Ewheat.cut Exenla.cut Eyeast.cut Eyeast_cai.cut Eyeast_high.cut Eyeast_mit.cut Eyeren.cut Eyerpe.cut Eacc.cut Eadenovirus5.cut Eadenovirus7.cut Eaidlav.cut Eanasp.cut Eani.cut Eani_h.cut Eanidmit.cut Easn.cut Eath.cut Eatu.cut '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/CODONS' install -m 0644 Eavi.cut Ebja.cut Ebly.cut Ebme.cut Ebmo.cut Ebna.cut Ebov.cut Ebovsp.cut Ebst.cut Ebsu.cut Ebsu_h.cut Ecac.cut Ecal.cut Eccr.cut Ecel.cut Echi.cut Echicken.cut Echisp.cut Echk.cut Echmp.cut Echnt.cut Echos.cut Echzm.cut Echzmrubp.cut Ecpx.cut Ecre.cut Ecrisp.cut Ectr.cut Eddi.cut Eddi_h.cut Edog.cut Edro.cut Edro_h.cut Edrosophila.cut Eeca.cut Eeco.cut Eeco_h.cut Eecoli.cut Ef1.cut Efish.cut '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/CODONS' install -m 0644 Efmdvpolyp.cut Eham.cut Ehha.cut Ehin.cut Ehma.cut Ehum.cut Ekla.cut Ekpn.cut Ella.cut Emac.cut Emam_h.cut Emixlg.cut Emsa.cut Emse.cut Emta.cut Emtu.cut Emus.cut Emussp.cut Emva.cut Emze.cut Emzecp.cut Encr.cut Eneu.cut Engo.cut Eoncsp.cut Epae.cut Epet.cut Epfa.cut Ephix174.cut Ephv.cut Ephy.cut Epig.cut Epolyomaa2.cut Epombe.cut Epombecai.cut Epot.cut Eppu.cut Epse.cut Epsy.cut Epvu.cut '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/CODONS' install -m 0644 Erab.cut Erabbit.cut Erabsp.cut Eratsp.cut Erca.cut Erhm.cut Eric.cut Erle.cut Erme.cut Ersp.cut Esalsp.cut Esau.cut Esco.cut Esgi.cut Eshp.cut Eshpsp.cut Esli.cut Eslm.cut Esma.cut Esmi.cut Esmu.cut Esoy.cut Espi.cut Espn.cut Espo.cut Espo_h.cut Espu.cut Esta.cut Esty.cut Esus.cut Esv40.cut Esyhsp.cut Esynsp.cut Etbr.cut Etcr.cut Eter.cut Etetsp.cut Etob.cut Etobcp.cut Etom.cut '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/CODONS' install -m 0644 Etrb.cut Evco.cut Ewht.cut Exel.cut Exenopus.cut Eyeastcai.cut Eyen.cut Eysc.cut Eysc_h.cut Eyscmt.cut Eysp.cut Ezebrafish.cut Ezma.cut '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/CODONS' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/CODONS' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/CODONS' Making install in JASPAR_CNE gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CNE' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CNE' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_CNE' install -m 0644 dummyfile '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_CNE' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CNE' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CNE' Making install in JASPAR_CORE gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CORE' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CORE' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_CORE' install -m 0644 dummyfile '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_CORE' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CORE' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CORE' Making install in JASPAR_FAM gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_FAM' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_FAM' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_FAM' install -m 0644 dummyfile '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_FAM' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_FAM' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_FAM' Making install in JASPAR_PBM gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_PBM' install -m 0644 dummyfile '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_PBM' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM' Making install in JASPAR_PBM_HLH gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HLH' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HLH' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_PBM_HLH' install -m 0644 dummyfile '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_PBM_HLH' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HLH' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HLH' Making install in JASPAR_PBM_HOMEO gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HOMEO' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HOMEO' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_PBM_HOMEO' install -m 0644 dummyfile '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_PBM_HOMEO' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HOMEO' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HOMEO' Making install in JASPAR_PHYLOFACTS gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PHYLOFACTS' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PHYLOFACTS' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_PHYLOFACTS' install -m 0644 dummyfile '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_PHYLOFACTS' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PHYLOFACTS' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PHYLOFACTS' Making install in JASPAR_POLII gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_POLII' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_POLII' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_POLII' install -m 0644 dummyfile '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_POLII' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_POLII' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_POLII' Making install in JASPAR_SPLICE gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_SPLICE' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_SPLICE' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_SPLICE' install -m 0644 dummyfile '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/JASPAR_SPLICE' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_SPLICE' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_SPLICE' Making install in OBO gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/OBO' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/OBO' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/OBO' install -m 0644 chebi.obo eco.obo go.obo pathway.obo ro.obo so.obo software.obo '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/OBO' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/OBO' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/OBO' Making install in PRINTS gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PRINTS' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PRINTS' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/PRINTS' install -m 0644 dummyfile '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/PRINTS' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PRINTS' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PRINTS' Making install in PROSITE gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PROSITE' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PROSITE' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/PROSITE' install -m 0644 dummyfile '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/PROSITE' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PROSITE' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PROSITE' Making install in REBASE gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/REBASE' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/REBASE' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/REBASE' install -m 0644 embossre.equ '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/REBASE' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/REBASE' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/REBASE' Making install in TAXONOMY gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/TAXONOMY' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/TAXONOMY' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/TAXONOMY' install -m 0644 division.dmp gencode.dmp merged.dmp names.dmp nodes.dmp '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data/TAXONOMY' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/TAXONOMY' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/TAXONOMY' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data' install -m 0644 DRCAT.dat EBLOSUM30 EBLOSUM35 EBLOSUM40 EBLOSUM45 EBLOSUM50 EBLOSUM55 EBLOSUM60 EBLOSUM62 EBLOSUM62-12 EBLOSUM65 EBLOSUM70 EBLOSUM75 EBLOSUM80 EBLOSUM85 EBLOSUM90 EBLOSUMN EDAM.obo EDNAFULL EDNAMAT EDNASIMPLE EGC.0 EGC.1 EGC.10 EGC.11 EGC.12 EGC.13 EGC.14 EGC.15 EGC.16 EGC.2 EGC.21 EGC.22 EGC.23 EGC.3 EGC.4 EGC.5 EGC.6 EGC.9 EGC.index '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data' install -m 0644 EGC.txt ENUC.4.2 ENUC.4.4 EPAM10 EPAM100 EPAM110 EPAM120 EPAM130 EPAM140 EPAM150 EPAM160 EPAM170 EPAM180 EPAM190 EPAM20 EPAM200 EPAM210 EPAM220 EPAM230 EPAM240 EPAM250 EPAM260 EPAM270 EPAM280 EPAM290 EPAM30 EPAM300 EPAM310 EPAM320 EPAM330 EPAM340 EPAM350 EPAM360 EPAM370 EPAM380 EPAM390 EPAM40 EPAM400 EPAM410 EPAM420 '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data' install -m 0644 EPAM430 EPAM440 EPAM450 EPAM460 EPAM470 EPAM480 EPAM490 EPAM50 EPAM500 EPAM60 EPAM70 EPAM80 EPAM90 Eaa_acc_surface.dat Eaa_hydropathy.dat Eaa_properties.dat Eamino.dat Eangles.dat Eangles_tri.dat Eantigenic.dat Ebases.iub Edayhoff.freq Edna.melt Eembl.ior Eenergy.dat Efeatures.embl Efeatures.emboss Efeatures.gff2 Efeatures.gff3 Efeatures.gff2protein Efeatures.gff3protein Efeatures.pir Efeatures.protein Efeatures.refseqp Efeatures.swiss Efreqs.dat Ehet.dat Ehth.dat Ehth87.dat Emass.dat '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data' install -m 0644 Emassmod.dat Ememe.dat Emethylsites.dat Emolwt.dat Emwfilter.dat Enakai.dat EnsemblAliases.dat EnsemblIdentifiers.dat Epepcoil.dat Epk.dat Epkexpasy.dat Epprofile Eprior1.plib Eprior30.plib Eresidues.iub Erna.melt Esig.euk Esig.pro Etags.embl Etags.emboss Etags.gff2 Etags.gff2protein Etags.gff3 Etags.gff3protein Etags.pir Etags.protein Etags.refseqp Etags.swiss Etcode.dat Evdw.dat Ewhite-wimley.dat Matrices.nucleotide Matrices.protein Matrices.proteinstructure SSSUB edialignmat tp400_dna tp400_prot tp400_trans '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/data' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' Making install in index gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/index' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/index' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/index' install -m 0644 drcat.ent drcat.pxac drcat.pxcat drcat.pxde drcat.pxedat drcat.pxefmt drcat.pxeid drcat.pxetpc drcat.pxid drcat.pxqfmt drcat.pxqin drcat.pxqout drcat.pxqurl drcat.pxrest drcat.pxrf drcat.pxsoap drcat.pxtaxid drcat.pxurl drcat.xac drcat.xcat drcat.xde drcat.xedat drcat.xefmt drcat.xeid drcat.xetpc drcat.xid drcat.xqfmt drcat.xqin drcat.xqout drcat.xqurl drcat.xrest drcat.xrf drcat.xsoap drcat.xtaxid drcat.xurl chebi.ent chebi.pxac chebi.pxde chebi.pxid chebi.pxis '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/index' install -m 0644 chebi.pxnm chebi.pxns chebi.xac chebi.xde chebi.xid chebi.xis chebi.xnm chebi.xns eco.ent eco.pxde eco.pxis eco.xde eco.xis eco.pxac eco.pxid eco.pxnm eco.xac eco.xid eco.xnm edam.ent edam.pxac edam.pxde edam.pxhasin edam.pxhasout edam.pxid edam.pxis edam.pxisfmt edam.pxisid edam.pxnm edam.pxns edam.xac edam.xde edam.xhasin edam.xhasout edam.xid edam.xis edam.xisfmt edam.xisid edam.xnm edam.xns '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/index' install -m 0644 go.ent go.pxde go.pxis go.pxns go.xde go.xis go.xns go.pxac go.pxid go.pxnm go.xac go.xid go.xnm pw.ent pw.pxde pw.pxis pw.xde pw.xis pw.pxac pw.pxid pw.pxnm pw.xac pw.xid pw.xnm ro.ent ro.pxde ro.pxis ro.xde ro.xis ro.pxac ro.pxid ro.pxnm ro.xac ro.xid ro.xnm so.ent so.pxde so.pxis so.xde so.xis '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/index' install -m 0644 so.pxac so.pxid so.pxnm so.xac so.xid so.xnm swo.ent swo.pxde swo.pxis swo.xde swo.xis swo.pxac swo.pxid swo.pxnm swo.pxns swo.xac swo.xid swo.xnm swo.xns taxon.ent taxon.pxac taxon.pxgc taxon.pxid taxon.pxmgc taxon.pxrnk taxon.pxtax taxon.pxup taxon.xac taxon.xgc taxon.xid taxon.xmgc taxon.xrnk taxon.xtax taxon.xup '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/index' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/index' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/index' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin' STRIPPROG='strip' /bin/sh ../libtool --mode=install /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s aaindexextract abiview acdc acdgalaxy acdlog acdpretty acdtable acdtrace acdvalid aligncopy aligncopypair antigenic assemblyget backtranambig backtranseq banana biosed btwisted cachedas cachedbfetch cacheebeyesearch cacheensembl cai chaos charge checktrans chips cirdna codcmp codcopy coderet compseq cons consambig cpgplot cpgreport cusp cutgextract cutseq dan dbiblast dbifasta dbiflat dbigcg dbtell dbxcompress dbxedam dbxfasta dbxflat dbxgcg dbxobo dbxreport dbxresource dbxstat dbxtax dbxuncompress degapseq density descseq diffseq distmat dotmatcher dotpath dottup dreg drfinddata drfindformat drfindid drfindresource drget drtext edamdef edamhasinput edamhasoutput edamisformat edamisid edamname edialign einverted embossdata embossupdate embossversion emma emowse entret epestfind eprimer3 eprimer32 equicktandem est2genome etandem extractalign extractfeat extractseq featcopy featmerge featreport feattext findkm freak fuzznuc fuzzpro fuzztran garnier geecee getorf godef goname helixturnhelix hmoment iep infoalign infoassembly infobase inforesidue infoseq isochore jaspextract jaspscan jembossctl lindna listor makenucseq makeprotseq marscan maskambignuc maskambigprot maskfeat maskseq matcher megamerger merger msbar mwcontam mwfilter needle needleall newcpgreport newcpgseek newseq nohtml noreturn nospace notab notseq nthseq nthseqset octanol oddcomp ontocount ontoget ontogetcommon ontogetdown ontogetobsolete ontogetroot ontogetsibs ontogetup ontoisobsolete ontotext palindrome pasteseq patmatdb patmatmotifs pepcoil pepdigest pepinfo pepnet pepstats pepwheel pepwindow pepwindowall plotcon plotorf polydot preg prettyplot prettyseq primersearch printsextract profit prophecy prophet prosextract pscan psiphi rebaseextract recoder redata refseqget remap restover restrict revseq seealso seqcount seqmatchall seqret seqretsetall seqretsplit seqxref seqxrefget servertell showalign showdb showfeat showorf showpep showseq showserver shuffleseq sigcleave silent sirna sixpack sizeseq skipredundant skipseq splitsource splitter stretcher stssearch supermatcher syco taxget taxgetdown taxgetrank taxgetspecies taxgetup tcode textget textsearch tfextract tfm tfscan tmap tranalign transeq trimest trimseq trimspace twofeat union urlget variationget vectorstrip water whichdb wobble wordcount wordfinder wordmatch wossdata wossinput wossname wossoperation wossoutput wossparam wosstopic xmlget xmltext yank '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin' libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/aaindexextract /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/aaindexextract libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/abiview /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/abiview libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/acdc /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/acdc libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/acdgalaxy /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/acdgalaxy libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/acdlog /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/acdlog libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/acdpretty /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/acdpretty libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/acdtable /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/acdtable libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/acdtrace /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/acdtrace libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/acdvalid /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/acdvalid libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/aligncopy /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/aligncopy libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/aligncopypair /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/aligncopypair libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/antigenic /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/antigenic libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/assemblyget /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/assemblyget libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/backtranambig /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/backtranambig libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/backtranseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/backtranseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/banana /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/banana libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/biosed /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/biosed libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/btwisted /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/btwisted libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/cachedas /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/cachedas libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/cachedbfetch /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/cachedbfetch libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/cacheebeyesearch /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/cacheebeyesearch libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/cacheensembl /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/cacheensembl libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/cai /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/cai libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/chaos /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/chaos libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/charge /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/charge libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/checktrans /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/checktrans libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/chips /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/chips libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/cirdna /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/cirdna libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/codcmp /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/codcmp libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/codcopy /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/codcopy libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/coderet /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/coderet libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/compseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/compseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/cons /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/cons libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/consambig /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/consambig libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/cpgplot /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/cpgplot libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/cpgreport /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/cpgreport libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/cusp /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/cusp libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/cutgextract /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/cutgextract libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/cutseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/cutseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dan /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dan libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dbiblast /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dbiblast libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dbifasta /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dbifasta libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dbiflat /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dbiflat libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dbigcg /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dbigcg libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dbtell /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dbtell libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dbxcompress /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dbxcompress libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dbxedam /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dbxedam libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dbxfasta /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dbxfasta libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dbxflat /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dbxflat libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dbxgcg /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dbxgcg libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dbxobo /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dbxobo libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dbxreport /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dbxreport libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dbxresource /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dbxresource libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dbxstat /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dbxstat libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dbxtax /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dbxtax libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dbxuncompress /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dbxuncompress libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/degapseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/degapseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/density /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/density libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/descseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/descseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/diffseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/diffseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/distmat /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/distmat libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dotmatcher /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dotmatcher libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dotpath /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dotpath libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dottup /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dottup libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/dreg /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/dreg libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/drfinddata /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/drfinddata libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/drfindformat /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/drfindformat libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/drfindid /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/drfindid libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/drfindresource /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/drfindresource libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/drget /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/drget libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/drtext /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/drtext libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/edamdef /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/edamdef libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/edamhasinput /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/edamhasinput libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/edamhasoutput /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/edamhasoutput libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/edamisformat /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/edamisformat libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/edamisid /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/edamisid libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/edamname /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/edamname libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/edialign /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/edialign libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/einverted /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/einverted libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/embossdata /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/embossdata libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/embossupdate /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/embossupdate libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/embossversion /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/embossversion libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/emma /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/emma libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/emowse /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/emowse libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/entret /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/entret libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/epestfind /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/epestfind libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/eprimer3 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/eprimer3 libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/eprimer32 /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/eprimer32 libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/equicktandem /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/equicktandem libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/est2genome /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/est2genome libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/etandem /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/etandem libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/extractalign /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/extractalign libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/extractfeat /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/extractfeat libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/extractseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/extractseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/featcopy /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/featcopy libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/featmerge /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/featmerge libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/featreport /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/featreport libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/feattext /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/feattext libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/findkm /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/findkm libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/freak /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/freak libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/fuzznuc /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/fuzznuc libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/fuzzpro /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/fuzzpro libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/fuzztran /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/fuzztran libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/garnier /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/garnier libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/geecee /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/geecee libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/getorf /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/getorf libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/godef /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/godef libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/goname /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/goname libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/helixturnhelix /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/helixturnhelix libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/hmoment /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/hmoment libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/iep /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/iep libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/infoalign /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/infoalign libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/infoassembly /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/infoassembly libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/infobase /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/infobase libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/inforesidue /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/inforesidue libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/infoseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/infoseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/isochore /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/isochore libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/jaspextract /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/jaspextract libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/jaspscan /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/jaspscan libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/jembossctl /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/jembossctl libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/lindna /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/lindna libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/listor /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/listor libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/makenucseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/makenucseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/makeprotseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/makeprotseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/marscan /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/marscan libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/maskambignuc /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/maskambignuc libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/maskambigprot /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/maskambigprot libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/maskfeat /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/maskfeat libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/maskseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/maskseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/matcher /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/matcher libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/megamerger /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/megamerger libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/merger /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/merger libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/msbar /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/msbar libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/mwcontam /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/mwcontam libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/mwfilter /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/mwfilter libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/needle /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/needle libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/needleall /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/needleall libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/newcpgreport /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/newcpgreport libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/newcpgseek /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/newcpgseek libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/newseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/newseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/nohtml /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/nohtml libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/noreturn /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/noreturn libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/nospace /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/nospace libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/notab /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/notab libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/notseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/notseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/nthseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/nthseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/nthseqset /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/nthseqset libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/octanol /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/octanol libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/oddcomp /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/oddcomp libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/ontocount /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/ontocount libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/ontoget /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/ontoget libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/ontogetcommon /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/ontogetcommon libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/ontogetdown /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/ontogetdown libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/ontogetobsolete /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/ontogetobsolete libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/ontogetroot /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/ontogetroot libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/ontogetsibs /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/ontogetsibs libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/ontogetup /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/ontogetup libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/ontoisobsolete /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/ontoisobsolete libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/ontotext /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/ontotext libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/palindrome /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/palindrome libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/pasteseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/pasteseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/patmatdb /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/patmatdb libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/patmatmotifs /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/patmatmotifs libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/pepcoil /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/pepcoil libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/pepdigest /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/pepdigest libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/pepinfo /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/pepinfo libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/pepnet /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/pepnet libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/pepstats /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/pepstats libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/pepwheel /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/pepwheel libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/pepwindow /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/pepwindow libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/pepwindowall /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/pepwindowall libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/plotcon /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/plotcon libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/plotorf /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/plotorf libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/polydot /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/polydot libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/preg /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/preg libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/prettyplot /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/prettyplot libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/prettyseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/prettyseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/primersearch /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/primersearch libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/printsextract /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/printsextract libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/profit /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/profit libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/prophecy /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/prophecy libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/prophet /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/prophet libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/prosextract /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/prosextract libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/pscan /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/pscan libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/psiphi /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/psiphi libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/rebaseextract /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/rebaseextract libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/recoder /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/recoder libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/redata /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/redata libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/refseqget /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/refseqget libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/remap /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/remap libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/restover /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/restover libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/restrict /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/restrict libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/revseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/revseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/seealso /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/seealso libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/seqcount /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/seqcount libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/seqmatchall /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/seqmatchall libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/seqret /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/seqret libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/seqretsetall /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/seqretsetall libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/seqretsplit /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/seqretsplit libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/seqxref /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/seqxref libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/seqxrefget /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/seqxrefget libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/servertell /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/servertell libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/showalign /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/showalign libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/showdb /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/showdb libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/showfeat /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/showfeat libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/showorf /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/showorf libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/showpep /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/showpep libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/showseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/showseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/showserver /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/showserver libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/shuffleseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/shuffleseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/sigcleave /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/sigcleave libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/silent /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/silent libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/sirna /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/sirna libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/sixpack /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/sixpack libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/sizeseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/sizeseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/skipredundant /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/skipredundant libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/skipseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/skipseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/splitsource /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/splitsource libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/splitter /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/splitter libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/stretcher /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/stretcher libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/stssearch /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/stssearch libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/supermatcher /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/supermatcher libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/syco /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/syco libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/taxget /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/taxget libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/taxgetdown /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/taxgetdown libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/taxgetrank /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/taxgetrank libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/taxgetspecies /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/taxgetspecies libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/taxgetup /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/taxgetup libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/tcode /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/tcode libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/textget /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/textget libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/textsearch /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/textsearch libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/tfextract /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/tfextract libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/tfm /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/tfm libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/tfscan /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/tfscan libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/tmap /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/tmap libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/tranalign /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/tranalign libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/transeq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/transeq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/trimest /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/trimest libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/trimseq /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/trimseq libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/trimspace /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/trimspace libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/twofeat /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/twofeat libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/union /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/union libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/urlget /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/urlget libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/variationget /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/variationget libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/vectorstrip /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/vectorstrip libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/water /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/water libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/whichdb /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/whichdb libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/wobble /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/wobble libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/wordcount /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/wordcount libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/wordfinder /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/wordfinder libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/wordmatch /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/wordmatch libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/wossdata /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/wossdata libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/wossinput /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/wossinput libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/wossname /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/wossname libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/wossoperation /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/wossoperation libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/wossoutput /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/wossoutput libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/wossparam /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/wossparam libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/wosstopic /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/wosstopic libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/xmlget /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/xmlget libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/xmltext /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/xmltext libtool: install: warning: `../nucleus/libnucleus.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/acd/libacd.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ajaxdb/libajaxdb.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/ensembl/libensembl.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/graphics/libajaxg.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/core/libajax.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/zlib/libezlib.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/expat/libeexpat.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../ajax/pcre/libepcre.la' has not been installed in `/usr/local/emboss/lib' libtool: install: warning: `../plplot/libeplplot.la' has not been installed in `/usr/local/emboss/lib' libtool: install: /bin/sh /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/install-sh -c -s .libs/yank /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin/yank /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS' install -m 0644 emboss.standard server.biomart server.dasregistry server.dbfetch server.dkfz server.ebeye server.entrez server.ensembl server.ensemblgenomes server.mrs server.mrs3 server.mrs4 server.srs server.wsdbfetch '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' Making install in test gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' Making install in data gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/data' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/data' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/test/data' install -m 0644 aaindex1.test prosite.dat prosite.doc prints.test withrefm site.dat cutg.codon dna.acedb dna.aln dna.asn1 dna.codata dna.embl dna.fasta dna.fitch dna.gcg dna.gcg8 dna.genbank dna.ig dna.m-acedb dna.m-codata dna.m-embl dna.m-fasta dna.m-fasta-long dna.m-ncbi dna.m-strider dna.msf dna.msf8 dna.ncbi dna.phylip dna.phylip3 dna.staden dna.strider dna.text feat.emft feat.fasta feat.pir mw1.dat mw2.dat mw3.dat paamir.gff '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/test/data' install -m 0644 paamir.gff3 paamir.pep pax6_cdna.fasta prot.acedb prot.codata prot.fasta prot.gcg prot.gcg8 prot.ig prot.m-acedb prot.m-codata prot.m-fasta prot.m-nbrf prot.m-ncbi prot.m-swiss prot.nbrf prot.ncbi prot.swiss prot.text z83307.seq 104k.nbrf aligna.dna alignapart.dna alignb.dna aligna.prot alignapart.prot alignb.prot nuc.pat nucseq.pat nucsimple.pat tranalign.pep tranalign.seq vtest.seq opsd.msf untrimmed.seq '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/test/data' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/data' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/data' Making install in embl gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/embl' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/embl' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/test/embl' install -m 0644 acnum.hit acnum.trg division.lkp entrynam.idx seqvn.hit seqvn.trg des.hit des.trg keyword.hit keyword.trg taxon.hit taxon.trg condiv.dat est.dat fun.dat hum1.dat inv.dat pln.dat pro.dat rod.dat sts.dat syn.dat vrl.dat vrt.dat wgs.dat '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/test/embl' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/embl' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/embl' Making install in genbank gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/genbank' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/genbank' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/test/genbank' install -m 0644 acnum.hit acnum.trg division.lkp entrynam.idx seqvn.hit seqvn.trg des.hit des.trg keyword.hit keyword.trg taxon.hit taxon.trg gbbct1.seq gbest1.seq gbinv1.seq gbpln1.seq gbpln2.seq gbpri1.seq gbrod1.seq gbsts1.seq gbvrl1.seq gbvrt.seq '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/test/genbank' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/genbank' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/genbank' Making install in pir gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/pir' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/pir' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/test/pir' install -m 0644 acnum.hit acnum.trg division.lkp entrynam.idx des.hit des.trg keyword.hit keyword.trg taxon.hit taxon.trg pir1.header pir1.names pir1.numbers pir1.offset pir1.ref pir1.seq pir2.header pir2.names pir2.numbers pir2.offset pir2.ref pir2.seq pir3.header pir3.names pir3.numbers pir3.offset pir3.ref pir3.seq pir4.header pir4.names pir4.numbers pir4.offset pir4.ref pir4.seq '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/test/pir' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/pir' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/pir' Making install in swiss gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swiss' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swiss' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/test/swiss' install -m 0644 seq.dat acnum.hit acnum.trg division.lkp entrynam.idx seqvn.hit seqvn.trg des.hit des.trg keyword.hit keyword.trg taxon.hit taxon.trg '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/test/swiss' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swiss' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swiss' Making install in swnew gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swnew' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swnew' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/test/swnew' install -m 0644 acnum.hit acnum.trg division.lkp entrynam.idx seqvn.hit seqvn.trg des.hit des.trg keyword.hit keyword.trg taxon.hit taxon.trg trembl.dat '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/test/swnew' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swnew' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swnew' Making install in testdb gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/testdb' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/testdb' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/test/testdb' install -m 0644 testdb.fasta acnum.hit acnum.trg division.lkp entrynam.idx des.hit des.trg '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/test/testdb' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/testdb' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/testdb' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' Making install in doc gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' Making install in manuals gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/manuals' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/manuals' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/manuals' install -m 0644 admin.tex admin.aux admin.dvi admin.log admin.pdf admin.ps admin.toc adminguide.tar.gz domainatrix.doc program.ps.gz EMBOSS-FreeBSD-HOWTO.txt emboss_qg.pdf emboss_qg.ps emboss.sty fdl.txt '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/manuals' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/manuals' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/manuals' Making install in programs gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' Making install in html gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/html' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/html' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/html' install -m 0644 groups.html acd_group.html alignment_group.html alignment_consensus_group.html alignment_differences_group.html alignment_dot_plots_group.html alignment_global_group.html alignment_local_group.html alignment_multiple_group.html assembly_fragment_assembly_group.html data_resources_group.html data_retrieval_group.html data_retrieval_chemistry_data_group.html data_retrieval_feature_data_group.html data_retrieval_ontology_data_group.html data_retrieval_resource_data_group.html data_retrieval_sequence_data_group.html data_retrieval_sequence_data_assembly_data_group.html data_retrieval_text_data_group.html data_retrieval_tool_data_group.html data_retrieval_url_data_group.html display_group.html documentation_group.html edit_group.html enzyme_kinetics_group.html feature_tables_group.html hmm_group.html information_group.html menus_group.html nucleic_2d_structure_group.html nucleic_codon_usage_group.html nucleic_composition_group.html nucleic_cpg_islands_group.html nucleic_functional_sites_group.html nucleic_gene_finding_group.html nucleic_motifs_group.html nucleic_mutation_group.html nucleic_primers_group.html nucleic_profiles_group.html nucleic_properties_group.html '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/html' install -m 0644 nucleic_repeats_group.html nucleic_restriction_group.html nucleic_rna_folding_group.html nucleic_transcription_group.html nucleic_translation_group.html ontology_group.html ontology_edam_group.html ontology_go_group.html ontology_taxonomy_group.html phylogeny_group.html phylogeny_consensus_group.html phylogeny_continuous_characters_group.html phylogeny_discrete_characters_group.html phylogeny_distance_matrix_group.html phylogeny_gene_frequencies_group.html phylogeny_molecular_sequence_group.html phylogeny_tree_drawing_group.html protein_2d_structure_group.html protein_3d_structure_group.html protein_composition_group.html protein_domains_group.html protein_functional_sites_group.html protein_modifications_group.html protein_motifs_group.html protein_mutation_group.html protein_profiles_group.html protein_properties_group.html test_group.html utils_group.html utils_database_creation_group.html utils_database_indexing_group.html '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/html' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/html' install -m 0644 emboss_icon.jpg abiview.1.abiview.gif banana.1.banana.gif chaos.1.chaos.gif cirdna.1.cirdna.gif cpgplot.1.cpgplot.gif dan.2.dan.gif density.1.density.gif density.2.density.gif density.3.density.gif dotmatcher.1.dotmatcher.gif dotpath.1.dotpath.gif dottup.1.dottup.gif emboss_icon.gif epestfind.1.epestfind.gif findkm.1.findkm.gif isochore.1.isochore.gif lindna.1.lindna.gif octanol.1.octanol.gif pepinfo.1.pepinfo.gif pepnet.1.pepnet.gif pepwheel.1.pepwheel.gif pepwindow.1.pepwindow.gif pepwindowall.1.pepwindowall.gif plotcon.1.plotcon.gif plotorf.1.plotorf.gif plotorf.2.plotorf.gif polydot.1.polydot.gif prettyplot.1.prettyplot.gif prettyplot.2.prettyplot.gif syco.1.syco.gif tcode.2.tcode.gif tmap.1.tmap.gif wobble.1.wobble.gif '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/html' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/html' install -m 0644 aaindexextract.html abiview.html acdc.html acdlog.html acdpretty.html acdtable.html acdtrace.html acdvalid.html aligncopy.html aligncopypair.html antigenic.html assemblyget.html backtranambig.html backtranseq.html banana.html biosed.html btwisted.html cachedas.html cachedbfetch.html cacheebeyesearch.html cacheensembl.html cai.html chaos.html charge.html checktrans.html chips.html cirdna.html codcmp.html codcopy.html coderet.html complex.html compseq.html cons.html consambig.html cpgplot.html cpgreport.html cusp.html cutgextract.html cutseq.html dan.html '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/html' install -m 0644 dbiblast.html dbifasta.html dbiflat.html dbigcg.html dbtell.html dbxcompress.html dbxedam.html dbxfasta.html dbxflat.html dbxgcg.html dbxobo.html dbxreport.html dbxresource.html dbxstat.html dbxtax.html dbxuncompress.html degapseq.html density.html descseq.html diffseq.html distmat.html dotmatcher.html dotpath.html dottup.html dreg.html drfinddata.html drfindformat.html drfindid.html drfindresource.html drget.html drtext.html edamdef.html edamhasinput.html edamhasoutput.html edamisformat.html edamisid.html edamname.html edialign.html einverted.html embossdata.html '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/html' install -m 0644 embossupdate.html embossversion.html emma.html emowse.html entret.html epestfind.html eprimer3.html eprimer32.html equicktandem.html est2genome.html etandem.html extractalign.html extractfeat.html extractseq.html featcopy.html featmerge.html featreport.html feattext.html findkm.html freak.html fuzznuc.html fuzzpro.html fuzztran.html garnier.html geecee.html getorf.html godef.html goname.html helixturnhelix.html hmoment.html iep.html index.html infoalign.html infoassembly.html infobase.html inforesidue.html infoseq.html isochore.html jaspextract.html jaspscan.html '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/html' install -m 0644 jembossctl.html '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/html' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/html' install -m 0644 libscan.html lindna.html listor.html makenucseq.html makeprotseq.html marscan.html maskambignuc.html maskambigprot.html maskfeat.html maskseq.html matcher.html megamerger.html merger.html msbar.html mwcontam.html mwfilter.html needle.html needleall.html newcpgreport.html newcpgseek.html newseq.html nohtml.html noreturn.html nospace.html notab.html notseq.html nthseq.html nthseqset.html octanol.html oddcomp.html ontocount.html ontoget.html ontogetcommon.html ontogetdown.html ontogetobsolete.html ontogetroot.html ontogetsibs.html ontogetup.html ontoisobsolete.html ontotext.html '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/html' install -m 0644 palindrome.html pasteseq.html patmatdb.html patmatmotifs.html pepcoil.html pepdigest.html pepinfo.html pepnet.html pepstats.html pepwheel.html pepwindow.html pepwindowall.html plotcon.html plotorf.html polydot.html preg.html prettyplot.html prettyseq.html primersearch.html printsextract.html profit.html prophecy.html prophet.html prosextract.html pscan.html psiphi.html rebaseextract.html recoder.html redata.html refseqget.html remap.html restover.html restrict.html revseq.html seealso.html seqcount.html seqmatchall.html seqret.html seqretsetall.html seqretsplit.html '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/html' install -m 0644 seqxref.html seqxrefget.html servertell.html showalign.html showdb.html showfeat.html showorf.html showpep.html showseq.html showserver.html shuffleseq.html sigcleave.html silent.html sirna.html sixpack.html sizeseq.html skipredundant.html skipseq.html splitsource.html splitter.html stretcher.html stssearch.html supermatcher.html syco.html taxget.html taxgetdown.html taxgetrank.html taxgetspecies.html taxgetup.html tcode.html template.html textget.html textsearch.html tfextract.html tfm.html tfscan.html tmap.html tranalign.html transeq.html trimest.html '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/html' install -m 0644 trimseq.html trimspace.html twofeat.html union.html urlget.html variationget.html vectorstrip.html water.html whichdb.html wobble.html wordcount.html wordfinder.html wordmatch.html wossdata.html wossinput.html wossname.html wossoperation.html wossoutput.html wossparam.html wosstopic.html xmlget.html xmltext.html yank.html '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/html' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/html' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/html' Making install in text gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/text' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/text' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/text' install -m 0644 aaindexextract.txt abiview.txt acdc.txt acdlog.txt acdpretty.txt acdtable.txt acdtrace.txt acdvalid.txt aligncopy.txt aligncopypair.txt antigenic.txt assemblyget.txt backtranambig.txt backtranseq.txt banana.txt biosed.txt btwisted.txt cachedas.txt cachedbfetch.txt cacheebeyesearch.txt cacheensembl.txt cai.txt chaos.txt charge.txt checktrans.txt chips.txt cirdna.txt codcmp.txt codcopy.txt coderet.txt complex.txt compseq.txt cons.txt consambig.txt cpgplot.txt cpgreport.txt cusp.txt cutgextract.txt cutseq.txt dan.txt '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/text' install -m 0644 dbiblast.txt dbifasta.txt dbiflat.txt dbigcg.txt dbtell.txt dbxcompress.txt dbxedam.txt dbxfasta.txt dbxflat.txt dbxgcg.txt dbxobo.txt dbxreport.txt dbxresource.txt dbxstat.txt dbxtax.txt dbxuncompress.txt degapseq.txt density.txt descseq.txt diffseq.txt distmat.txt dotmatcher.txt dotpath.txt dottup.txt dreg.txt drfinddata.txt drfindformat.txt drfindid.txt drfindresource.txt drget.txt drtext.txt edamdef.txt edamhasinput.txt edamhasoutput.txt edamisformat.txt edamisid.txt edamname.txt edialign.txt einverted.txt embossdata.txt '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/text' install -m 0644 embossupdate.txt embossversion.txt emma.txt emowse.txt entret.txt epestfind.txt eprimer3.txt eprimer32.txt equicktandem.txt est2genome.txt etandem.txt extractalign.txt extractfeat.txt extractseq.txt featcopy.txt featmerge.txt featreport.txt feattext.txt findkm.txt freak.txt fuzznuc.txt fuzzpro.txt fuzztran.txt garnier.txt geecee.txt getorf.txt godef.txt goname.txt helixturnhelix.txt hmoment.txt iep.txt infoalign.txt infoassembly.txt infobase.txt inforesidue.txt infoseq.txt isochore.txt jaspextract.txt jaspscan.txt jembossctl.txt '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/text' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/text' install -m 0644 lindna.txt listor.txt makenucseq.txt makeprotseq.txt marscan.txt maskambignuc.txt maskambigprot.txt maskfeat.txt maskseq.txt matcher.txt megamerger.txt merger.txt msbar.txt mwcontam.txt mwfilter.txt needle.txt needleall.txt newcpgreport.txt newcpgseek.txt newseq.txt nohtml.txt noreturn.txt nospace.txt notab.txt notseq.txt nthseq.txt nthseqset.txt octanol.txt oddcomp.txt ontocount.txt ontoget.txt ontogetcommon.txt ontogetdown.txt ontogetobsolete.txt ontogetroot.txt ontogetsibs.txt ontogetup.txt ontoisobsolete.txt ontotext.txt palindrome.txt '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/text' install -m 0644 pasteseq.txt patmatdb.txt patmatmotifs.txt pepcoil.txt pepdigest.txt pepinfo.txt pepnet.txt pepstats.txt pepwheel.txt pepwindow.txt pepwindowall.txt plotcon.txt plotorf.txt polydot.txt preg.txt prettyplot.txt prettyseq.txt primersearch.txt printsextract.txt profit.txt prophecy.txt prophet.txt prosextract.txt pscan.txt psiphi.txt rebaseextract.txt recoder.txt redata.txt refseqget.txt remap.txt restover.txt restrict.txt revseq.txt seealso.txt seqcount.txt seqmatchall.txt seqret.txt seqretsetall.txt seqretsplit.txt seqxref.txt '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/text' install -m 0644 seqxrefget.txt servertell.txt showalign.txt showdb.txt showfeat.txt showorf.txt showpep.txt showseq.txt showserver.txt shuffleseq.txt sigcleave.txt silent.txt sirna.txt sixpack.txt sizeseq.txt skipredundant.txt skipseq.txt splitsource.txt splitter.txt stretcher.txt stssearch.txt supermatcher.txt syco.txt taxget.txt taxgetdown.txt taxgetrank.txt taxgetspecies.txt taxgetup.txt tcode.txt textget.txt textsearch.txt tfextract.txt tfm.txt tfscan.txt tmap.txt tranalign.txt transeq.txt trimest.txt trimseq.txt trimspace.txt '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/text' install -m 0644 twofeat.txt union.txt urlget.txt variationget.txt vectorstrip.txt water.txt whichdb.txt wobble.txt wordcount.txt wordfinder.txt wordmatch.txt wossdata.txt wossinput.txt wossname.txt wossoperation.txt wossoutput.txt wossparam.txt wosstopic.txt xmlget.txt xmltext.txt yank.txt '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/programs/text' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/text' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/text' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' gmake[5]: Nothing to be done for 'install-exec-am'. gmake[5]: Nothing to be done for 'install-data-am'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' Making install in tutorials gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/tutorials' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/tutorials' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/tutorials' install -m 0644 emboss-gcg.ppt emboss-interfaces.ppt emboss-talk.ppt emboss_tut.tar.gz '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/doc/tutorials' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/tutorials' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/tutorials' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' Making install in jemboss gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' Making install in images gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/images' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/images' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/jemboss/images' install -m 0644 Backward_arrow_button.gif Forward_arrow_button.gif Go_button.gif Information_button.gif Jemboss_logo_greyback.gif Jemboss_logo_large.gif Jemboss_logo_small.gif Job_manager_button.gif Refresh_button.gif Refresh_button2.gif jay64.jpg '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/jemboss/images' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/images' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/images' Making install in lib gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' Making install in axis gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib/axis' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib/axis' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/jemboss/lib/axis' install -m 0644 axis-ant.jar axis.jar commons-discovery.jar commons-logging.jar jaxrpc.jar log4j-1.2.8.jar saaj.jar servlet.jar wsdl4j.jar '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/jemboss/lib/axis' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib/axis' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib/axis' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' gmake[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/jemboss/lib' install -m 0644 README activation.jar jakarta-regexp-1.2.jar mail.jar jalviewApplet.jar jemboss.jar '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/jemboss/lib' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' Making install in resources gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources' /usr/local/bin/gmake install-exec-hook gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources' (if test -d /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/jemboss/resources ; then \ echo "resources folder exists"; \ else \ mkdir -p /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/jemboss/resources; \ fi); echo "Preparing /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/jemboss/resources/jemboss.properties"; \ sed "s|user.auth=true|user.auth=false|" jemboss.properties | sed "s|jemboss.server=true|jemboss.server=false|" | sed "s|/packages/emboss/STABLE|/usr/local/emboss|" > jemboss.properties.new; Preparing /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/jemboss/resources/jemboss.properties echo "embossHavePDF=false" >> jemboss.properties.new; mv -f jemboss.properties.new /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/jemboss/resources/jemboss.properties; gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/jemboss/resources' install -m 0644 readme.html readmeAlign.html readmeDNADraw.html results.html version filemgr.html seqList.html '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/jemboss/resources' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources' Making install in utils gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/utils' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/utils' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/jemboss/utils' install -m 0644 install-jemboss-server.sh keys.sh makeJar.csh makeJNLP.sh makeFileManagerJNLP.sh template.html README jws-launch-button.png '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/jemboss/utils' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/utils' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/utils' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin' install -m 555 runJemboss.sh '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/bin' /usr/local/bin/gmake install-exec-hook gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' rm -f /wrkdirs/usr/ports/biology/emboss/work/stageindir/runJemboss.csh; gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' /bin/mkdir -p '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/jemboss' install -m 0644 LICENSE readme.html README '/wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS/jemboss' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' /usr/local/bin/gmake gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' Making all in plplot gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot' Making all in lib gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot/lib' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot/lib' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot' gmake[6]: Nothing to be done for 'all-am'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/plplot' Making all in ajax gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' Making all in pcre gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/pcre' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/pcre' Making all in expat gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/expat' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/expat' Making all in zlib gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/zlib' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/zlib' Making all in core gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' /usr/local/bin/gmake all-am gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/core' Making all in graphics gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/graphics' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/graphics' Making all in ensembl gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/ensembl' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/ensembl' Making all in ajaxdb gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/ajaxdb' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/ajaxdb' Making all in acd gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/acd' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax/acd' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' gmake[6]: Nothing to be done for 'all-am'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/ajax' Making all in nucleus gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/nucleus' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/nucleus' Making all in emboss gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' Making all in acd gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/acd' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/acd' Making all in data gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' Making all in AAINDEX gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/AAINDEX' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/AAINDEX' Making all in CODONS gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/CODONS' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/CODONS' Making all in JASPAR_CNE gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CNE' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CNE' Making all in JASPAR_CORE gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CORE' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_CORE' Making all in JASPAR_FAM gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_FAM' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_FAM' Making all in JASPAR_PBM gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM' Making all in JASPAR_PBM_HLH gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HLH' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HLH' Making all in JASPAR_PBM_HOMEO gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HOMEO' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PBM_HOMEO' Making all in JASPAR_PHYLOFACTS gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PHYLOFACTS' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_PHYLOFACTS' Making all in JASPAR_POLII gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_POLII' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_POLII' Making all in JASPAR_SPLICE gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_SPLICE' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/JASPAR_SPLICE' Making all in OBO gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/OBO' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/OBO' Making all in PRINTS gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PRINTS' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PRINTS' Making all in PROSITE gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PROSITE' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/PROSITE' Making all in REBASE gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/REBASE' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/REBASE' Making all in TAXONOMY gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/TAXONOMY' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data/TAXONOMY' gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' gmake[7]: Nothing to be done for 'all-am'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/data' Making all in index gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/index' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/index' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' gmake[6]: Nothing to be done for 'all-am'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss' Making all in test gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' Making all in data gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/data' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/data' Making all in embl gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/embl' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/embl' Making all in genbank gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/genbank' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/genbank' Making all in pir gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/pir' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/pir' Making all in swiss gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swiss' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swiss' Making all in swnew gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swnew' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/swnew' Making all in testdb gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/testdb' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test/testdb' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' gmake[6]: Nothing to be done for 'all-am'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/test' Making all in doc gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' Making all in manuals gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/manuals' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/manuals' Making all in programs gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' Making all in html gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/html' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/html' Making all in text gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/text' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs/text' gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' gmake[7]: Nothing to be done for 'all-am'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/programs' Making all in tutorials gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/tutorials' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc/tutorials' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' gmake[6]: Nothing to be done for 'all-am'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/doc' Making all in jemboss gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' Making all in images gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/images' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/images' Making all in lib gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' Making all in axis gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib/axis' gmake[7]: Nothing to be done for 'all'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib/axis' gmake[7]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' gmake[7]: Nothing to be done for 'all-am'. gmake[7]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/lib' Making all in resources gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/resources' Making all in utils gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/utils' gmake[6]: Nothing to be done for 'all'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss/utils' gmake[6]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' gmake[6]: Nothing to be done for 'all-am'. gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/jemboss' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' gmake[5]: Nothing to be done for 'all-am'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' gmake[3]: Nothing to be done for 'install-data-am'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0' install -m 555 /wrkdirs/usr/ports/biology/emboss/work/emboss-shell /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/bin install -m 0644 /wrkdirs/usr/ports/biology/emboss/work/EMBOSS-6.6.0/emboss/emboss.default.template /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/emboss/share/EMBOSS install -s -m 555 /wrkdirs/usr/ports/biology/emboss/work/emboss /wrkdirs/usr/ports/biology/emboss/work/stage/usr/local/bin ====> Compressing man pages (compress-man) ===> Installing ldconfig configuration file =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-03-18T19:53:36+0000' 'PKG_NOTE_ports_top_git_hash=8c988f802ea2' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=ee6c86aea577' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for emboss-6.6.0_7 ===> Building emboss-6.6.0_7 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for emboss-6.6.0_7 build of biology/emboss | emboss-6.6.0_7 ended at Wed Mar 18 15:55:37 EDT 2026 build time: 00:02:02