=>> Building biology/diamond build started at Tue Sep 30 23:40:17 EDT 2025 port directory: /usr/ports/biology/diamond package name: diamond-2.1.14 building for: FreeBSD pkg.DaveG.ca 15.0-ALPHA3 FreeBSD 15.0-ALPHA3 1500064 amd64 maintained by: jrm@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 415 Sep 22 04:12 /usr/ports/biology/diamond/Makefile Ports top last git commit: a936fb9b16ba Ports top unclean checkout: no Port dir last git commit: 483bf7a59028 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500064 Jail OSVERSION: 1500064 Job Id: 03 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500064 UNAME_v=FreeBSD 15.0-ALPHA3 1500064 UNAME_r=15.0-ALPHA3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/03/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_15_c_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_15_c_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jrm@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/diamond/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/diamond/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/diamond/work/.cache HOME=/wrkdirs/usr/ports/biology/diamond/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/diamond/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/diamond/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/biology/diamond/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/diamond/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/diamond/work/.cache HOME=/wrkdirs/usr/ports/biology/diamond/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/diamond/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/diamond/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/diamond/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/diamond" EXAMPLESDIR="share/examples/diamond" DATADIR="share/diamond" WWWDIR="www/diamond" ETCDIR="etc/diamond" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/diamond DOCSDIR=/usr/local/share/doc/diamond EXAMPLESDIR=/usr/local/share/examples/diamond WWWDIR=/usr/local/www/diamond ETCDIR=/usr/local/etc/diamond --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> diamond-2.1.14 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.3.1.pkg [pkg.DaveG.ca] Installing pkg-2.3.1... [pkg.DaveG.ca] Extracting pkg-2.3.1: .......... done ===> diamond-2.1.14 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of diamond-2.1.14 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 => bbuchfink-diamond-v2.1.14_GH0.tar.gz doesn't seem to exist in /portdistfiles. => Attempting to fetch https://codeload.github.com/bbuchfink/diamond/tar.gz/v2.1.14?dummy=/bbuchfink-diamond-v2.1.14_GH0.tar.gz fetch: https://codeload.github.com/bbuchfink/diamond/tar.gz/v2.1.14?dummy=/bbuchfink-diamond-v2.1.14_GH0.tar.gz: size unknown fetch: https://codeload.github.com/bbuchfink/diamond/tar.gz/v2.1.14?dummy=/bbuchfink-diamond-v2.1.14_GH0.tar.gz: size of remote file is not known bbuchfink-diamond-v2.1.14_GH0.tar.gz 1711 kB 1141 kBps 01s => Fetched file size mismatch (expected 1751615, actual 1752657) => Trying next site => Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/bbuchfink-diamond-v2.1.14_GH0.tar.gz bbuchfink-diamond-v2.1.14_GH0.tar.gz 1710 kB 839 kBps 02s ===> Fetching all distfiles required by diamond-2.1.14 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by diamond-2.1.14 for building => SHA256 Checksum OK for bbuchfink-diamond-v2.1.14_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by diamond-2.1.14 for building ===> Extracting for diamond-2.1.14 => SHA256 Checksum OK for bbuchfink-diamond-v2.1.14_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for diamond-2.1.14 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> diamond-2.1.14 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.7_1.pkg [pkg.DaveG.ca] Installing cmake-core-3.31.7_1... [pkg.DaveG.ca] `-- Installing expat-2.7.2... [pkg.DaveG.ca] `-- Extracting expat-2.7.2: .......... done [pkg.DaveG.ca] `-- Installing jsoncpp-1.9.6_1... [pkg.DaveG.ca] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg.DaveG.ca] `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | `-- Installing libunistring-1.3... [pkg.DaveG.ca] | `-- Extracting libunistring-1.3: .......... done [pkg.DaveG.ca] `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] `-- Installing libuv-1.51.0... [pkg.DaveG.ca] `-- Extracting libuv-1.51.0: .......... done [pkg.DaveG.ca] `-- Installing rhash-1.4.4_1... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.23.1... [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg.DaveG.ca] `-- Extracting rhash-1.4.4_1: .......... done [pkg.DaveG.ca] Extracting cmake-core-3.31.7_1: .......... done ===> diamond-2.1.14 depends on file: /usr/local/bin/cmake - found ===> Returning to build of diamond-2.1.14 ===> diamond-2.1.14 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.13.1,4.pkg [pkg.DaveG.ca] Installing ninja-1.13.1,4... [pkg.DaveG.ca] `-- Installing python311-3.11.13_1... [pkg.DaveG.ca] | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | `-- Installing readline-8.2.13_2... [pkg.DaveG.ca] | `-- Extracting readline-8.2.13_2: .......... done [pkg.DaveG.ca] `-- Extracting python311-3.11.13_1: .......... done [pkg.DaveG.ca] Extracting ninja-1.13.1,4: ..... done ===== Message from python311-3.11.13_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> diamond-2.1.14 depends on executable: ninja - found ===> Returning to build of diamond-2.1.14 ===> diamond-2.1.14 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> diamond-2.1.14 depends on file: /usr/local/bin/ccache - found ===> Returning to build of diamond-2.1.14 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for diamond-2.1.14 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/biology/diamond/work/.build CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is Clang 19.1.7 -- The CXX compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of ptrdiff_t -- Check size of ptrdiff_t - done -- Check size of int -- Check size of int - done -- Performing Test HAS_GNUPP14 -- Performing Test HAS_GNUPP14 - Success -- Performing Test HAS_GNUPP17 -- Performing Test HAS_GNUPP17 - Success -- Performing Test HAS_GNUPP20 -- Performing Test HAS_GNUPP20 - Success -- Looking for sysinfo -- Looking for sysinfo - not found -- Found ZLIB: /usr/lib/libz.so (found version "1.3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Configuring done (20.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_COLOR_MAKEFILE CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /wrkdirs/usr/ports/biology/diamond/work/.build =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for diamond-2.1.14 [ 0% 16/177] /usr/local/libexec/ccache/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o -c /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/dp/ungapped_simd.cpp [ 1% 17/177] /usr/local/libexec/ccache/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_SSE4_1 -DARCH_ID=1 -mssse3 -mpopcnt -msse4.1 -DEigen=Eigen_SSE4_1 -MD -MT CMakeFiles/arch_sse4_1.dir/src/dp/scan_diags.cpp.o -MF CMakeFiles/arch_sse4_1.dir/src/dp/scan_diags.cpp.o.d -o CMakeFiles/arch_sse4_1.dir/src/dp/scan_diags.cpp.o -c /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/dp/scan_diags.cpp [ 1% 18/177] /usr/local/libexec/ccache/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_SSE4_1 -DARCH_ID=1 -mssse3 -mpopcnt -msse4.1 -DEigen=Eigen_SSE4_1 -MD -MT CMakeFiles/arch_sse4_1.dir/src/dp/ungapped_simd.cpp.o -MF CMakeFiles/arch_sse4_1.dir/src/dp/ungapped_simd.cpp.o.d -o CMakeFiles/arch_sse4_1.dir/src/dp/ungapped_simd.cpp.o -c /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/dp/ungapped_simd.cpp [ 2% 19/177] /usr/local/libexec/ccache/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o -c /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/dp/scan_diags.cpp [ 2% 20/177] /usr/local/libexec/ccache/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/masking/tantan.cpp.o -MF CMakeFiles/arch_generic.dir/src/masking/tantan.cpp.o.d -o CMakeFiles/arch_generic.dir/src/masking/tantan.cpp.o -c /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:462: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:905:102: warning: bitwise operation between different enumeration types ('Eigen_GENERIC::PlainObjectBase>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:102:5)' and 'Eigen_GENERIC::StorageOptions') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 905 | EIGEN_STATIC_ASSERT((EIGEN_IMPLIES(MaxRowsAtCompileTime==1 && MaxColsAtCompileTime!=1, (Options&RowMajor)==RowMajor) | ~~~~~~~^~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/Macros.h:954:38: note: expanded from macro 'EIGEN_IMPLIES' 954 | #define EIGEN_IMPLIES(a,b) (!(a) || (b)) | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: expanded from macro 'EIGEN_STATIC_ASSERT' 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:134:13: note: in instantiation of member function 'Eigen_GENERIC::PlainObjectBase>::_check_template_params' requested here 134 | Base::_check_template_params(); | ^ /usr/include/c++/v1/array:169:29: note: in instantiation of member function 'Eigen_GENERIC::Array::Array' requested here 169 | struct _LIBCPP_TEMPLATE_VIS array { | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:462: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:906:102: warning: bitwise operation between different enumeration types ('Eigen_GENERIC::PlainObjectBase>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:102:5)' and 'Eigen_GENERIC::StorageOptions') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 906 | && EIGEN_IMPLIES(MaxColsAtCompileTime==1 && MaxRowsAtCompileTime!=1, (Options&RowMajor)==0) | ~~~~~~~^~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/Macros.h:954:38: note: expanded from macro 'EIGEN_IMPLIES' 954 | #define EIGEN_IMPLIES(a,b) (!(a) || (b)) | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: expanded from macro 'EIGEN_STATIC_ASSERT' 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:462: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:905:102: warning: bitwise operation between different enumeration types ('Eigen_GENERIC::PlainObjectBase>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:102:5)' and 'Eigen_GENERIC::StorageOptions') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 905 | EIGEN_STATIC_ASSERT((EIGEN_IMPLIES(MaxRowsAtCompileTime==1 && MaxColsAtCompileTime!=1, (Options&RowMajor)==RowMajor) | ~~~~~~~^~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/Macros.h:954:38: note: expanded from macro 'EIGEN_IMPLIES' 954 | #define EIGEN_IMPLIES(a,b) (!(a) || (b)) | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: expanded from macro 'EIGEN_STATIC_ASSERT' 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:170:13: note: in instantiation of member function 'Eigen_GENERIC::PlainObjectBase>::_check_template_params' requested here 170 | Base::_check_template_params(); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:61:26: note: in instantiation of function template specialization 'Eigen_GENERIC::Array::Array' requested here 61 | Array f(0.0), d, t; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:462: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:906:102: warning: bitwise operation between different enumeration types ('Eigen_GENERIC::PlainObjectBase>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:102:5)' and 'Eigen_GENERIC::StorageOptions') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 906 | && EIGEN_IMPLIES(MaxColsAtCompileTime==1 && MaxRowsAtCompileTime!=1, (Options&RowMajor)==0) | ~~~~~~~^~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/Macros.h:954:38: note: expanded from macro 'EIGEN_IMPLIES' 954 | #define EIGEN_IMPLIES(a,b) (!(a) || (b)) | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: expanded from macro 'EIGEN_STATIC_ASSERT' 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_GENERIC::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_GENERIC::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_GENERIC::internal::dense_assignment_loop>, Eigen_GENERIC::internal::evaluator, Eigen_GENERIC::Array>>, Eigen_GENERIC::internal::assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_dense_assignment_loop, Eigen_GENERIC::CwiseNullaryOp, Eigen_GENERIC::Array>, Eigen_GENERIC::internal::assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_GENERIC::internal::Assignment, Eigen_GENERIC::CwiseNullaryOp, Eigen_GENERIC::Array>, Eigen_GENERIC::internal::assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_assignment_no_alias, Eigen_GENERIC::CwiseNullaryOp, Eigen_GENERIC::Array>, Eigen_GENERIC::internal::assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:782:3: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_assignment, Eigen_GENERIC::CwiseNullaryOp, Eigen_GENERIC::Array>, Eigen_GENERIC::internal::assign_op>' requested here 782 | call_assignment(dst, src, internal::assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:714:17: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 714 | internal::call_assignment(this->derived(), other.derived()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:109:20: note: in instantiation of function template specialization 'Eigen_GENERIC::PlainObjectBase>::_set, Eigen_GENERIC::Array>>' requested here 109 | return Base::_set(other); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CwiseNullaryOp.h:327:20: note: in instantiation of function template specialization 'Eigen_GENERIC::Array::operator=, Eigen_GENERIC::Array>>' requested here 327 | return derived() = Constant(rows(), cols(), val); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:859:13: note: in instantiation of member function 'Eigen_GENERIC::DenseBase>::setConstant' requested here 859 | Base::setConstant(val0); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:171:22: note: in instantiation of function template specialization 'Eigen_GENERIC::PlainObjectBase>::_init1' requested here 171 | Base::template _init1(x); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:61:26: note: in instantiation of function template specialization 'Eigen_GENERIC::Array::Array' requested here 61 | Array f(0.0), d, t; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:483: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:315:28: warning: arithmetic between different enumeration types ('Eigen_GENERIC::internal::redux_evaluator>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:345:3)' and 'Eigen_GENERIC::internal::redux_traits, Eigen_GENERIC::internal::redux_evaluator>>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:31:3)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 315 | VectorizedSize = (Size / PacketSize) * PacketSize | ~~~~ ^ ~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:418:20: note: in instantiation of template class 'Eigen_GENERIC::internal::redux_impl, Eigen_GENERIC::internal::redux_evaluator>>' requested here 418 | return internal::redux_impl::run(thisEval, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:453:20: note: in instantiation of function template specialization 'Eigen_GENERIC::DenseBase>::redux>' requested here 453 | return derived().redux(Eigen::internal::scalar_sum_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:82:21: note: in instantiation of member function 'Eigen_GENERIC::DenseBase>::sum' requested here 82 | const float s = f.sum(); | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_GENERIC::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_GENERIC::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_GENERIC::internal::dense_assignment_loop>, Eigen_GENERIC::internal::evaluator>, Eigen_GENERIC::internal::mul_assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_dense_assignment_loop, Eigen_GENERIC::Array, Eigen_GENERIC::internal::mul_assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_GENERIC::internal::Assignment, Eigen_GENERIC::Array, Eigen_GENERIC::internal::mul_assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_assignment_no_alias, Eigen_GENERIC::Array, Eigen_GENERIC::internal::mul_assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/ArrayBase.h:207:3: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_assignment, Eigen_GENERIC::Array, Eigen_GENERIC::internal::mul_assign_op>' requested here 207 | call_assignment(derived(), other.derived(), internal::mul_assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:84:5: note: in instantiation of function template specialization 'Eigen_GENERIC::ArrayBase>::operator*=>' requested here 84 | t *= d; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_GENERIC::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_GENERIC::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_GENERIC::internal::dense_assignment_loop>, Eigen_GENERIC::internal::evaluator, Eigen_GENERIC::Array>>, Eigen_GENERIC::internal::mul_assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_dense_assignment_loop, Eigen_GENERIC::CwiseNullaryOp, Eigen_GENERIC::Array>, Eigen_GENERIC::internal::mul_assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_GENERIC::internal::Assignment, Eigen_GENERIC::CwiseNullaryOp, Eigen_GENERIC::Array>, Eigen_GENERIC::internal::mul_assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_assignment_no_alias, Eigen_GENERIC::CwiseNullaryOp, Eigen_GENERIC::Array>, Eigen_GENERIC::internal::mul_assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/SelfCwiseBinaryOp.h:20:13: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_assignment, Eigen_GENERIC::CwiseNullaryOp, Eigen_GENERIC::Array>, Eigen_GENERIC::internal::mul_assign_op>' requested here 20 | internal::call_assignment(this->derived(), PlainObject::Constant(rows(),cols(),other), internal::mul_assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:85:5: note: in instantiation of member function 'Eigen_GENERIC::DenseBase>::operator*=' requested here 85 | f *= f2f; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_GENERIC::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_GENERIC::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_GENERIC::internal::dense_assignment_loop>, Eigen_GENERIC::internal::evaluator>, Eigen_GENERIC::internal::add_assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_dense_assignment_loop, Eigen_GENERIC::Array, Eigen_GENERIC::internal::add_assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_GENERIC::internal::Assignment, Eigen_GENERIC::Array, Eigen_GENERIC::internal::add_assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_assignment_no_alias, Eigen_GENERIC::Array, Eigen_GENERIC::internal::add_assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/ArrayBase.h:194:3: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_assignment, Eigen_GENERIC::Array, Eigen_GENERIC::internal::add_assign_op>' requested here 194 | call_assignment(derived(), other.derived(), internal::add_assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:86:5: note: in instantiation of function template specialization 'Eigen_GENERIC::ArrayBase>::operator+=>' requested here 86 | f += t; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_GENERIC::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_GENERIC::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_GENERIC::internal::dense_assignment_loop>, Eigen_GENERIC::internal::evaluator, 50, 1>>, Eigen_GENERIC::internal::mul_assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_dense_assignment_loop, Eigen_GENERIC::Block, 50, 1>, Eigen_GENERIC::internal::mul_assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_GENERIC::internal::Assignment, Eigen_GENERIC::Block, 50, 1>, Eigen_GENERIC::internal::mul_assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_assignment_no_alias, Eigen_GENERIC::Block, 50, 1>, Eigen_GENERIC::internal::mul_assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/ArrayBase.h:207:3: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_assignment, Eigen_GENERIC::Block, 50, 1>, Eigen_GENERIC::internal::mul_assign_op>' requested here 207 | call_assignment(derived(), other.derived(), internal::mul_assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:88:5: note: in instantiation of function template specialization 'Eigen_GENERIC::ArrayBase>::operator*=, 50, 1>>' requested here 88 | f *= e[(size_t)letter_mask(seq[i])].template segment(len - i, WINDOW); | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_GENERIC::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_GENERIC::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_GENERIC::internal::dense_assignment_loop>, Eigen_GENERIC::internal::evaluator>, Eigen_GENERIC::internal::assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_dense_assignment_loop, Eigen_GENERIC::Array, Eigen_GENERIC::internal::assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_GENERIC::internal::Assignment, Eigen_GENERIC::Array, Eigen_GENERIC::internal::assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_assignment_no_alias, Eigen_GENERIC::Array, Eigen_GENERIC::internal::assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:782:3: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_assignment, Eigen_GENERIC::Array, Eigen_GENERIC::internal::assign_op>' requested here 782 | call_assignment(dst, src, internal::assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:714:17: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_assignment, Eigen_GENERIC::Array>' requested here 714 | internal::call_assignment(this->derived(), other.derived()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:118:20: note: in instantiation of function template specialization 'Eigen_GENERIC::PlainObjectBase>::_set>' requested here 118 | return Base::_set(other); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:124:5: note: in instantiation of member function 'Eigen_GENERIC::Array::operator=' requested here 124 | t = f; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_GENERIC::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_GENERIC::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_GENERIC::internal::dense_assignment_loop>, Eigen_GENERIC::internal::evaluator, Eigen_GENERIC::Array>>, Eigen_GENERIC::internal::add_assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_dense_assignment_loop, Eigen_GENERIC::CwiseNullaryOp, Eigen_GENERIC::Array>, Eigen_GENERIC::internal::add_assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_GENERIC::internal::Assignment, Eigen_GENERIC::CwiseNullaryOp, Eigen_GENERIC::Array>, Eigen_GENERIC::internal::add_assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_assignment_no_alias, Eigen_GENERIC::CwiseNullaryOp, Eigen_GENERIC::Array>, Eigen_GENERIC::internal::add_assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/SelfCwiseBinaryOp.h:27:13: note: in instantiation of function template specialization 'Eigen_GENERIC::internal::call_assignment, Eigen_GENERIC::CwiseNullaryOp, Eigen_GENERIC::Array>, Eigen_GENERIC::internal::add_assign_op>' requested here 27 | internal::call_assignment(this->derived(), PlainObject::Constant(rows(),cols(),other), internal::add_assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:127:5: note: in instantiation of member function 'Eigen_GENERIC::ArrayBase>::operator+=' requested here 127 | f += p_repeat_end * b; | ^ 12 warnings generated. [ 3% 21/177] /usr/local/libexec/ccache/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_SSE4_1 -DARCH_ID=1 -mssse3 -mpopcnt -msse4.1 -DEigen=Eigen_SSE4_1 -MD -MT CMakeFiles/arch_sse4_1.dir/src/masking/tantan.cpp.o -MF CMakeFiles/arch_sse4_1.dir/src/masking/tantan.cpp.o.d -o CMakeFiles/arch_sse4_1.dir/src/masking/tantan.cpp.o -c /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:462: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:905:102: warning: bitwise operation between different enumeration types ('Eigen_SSE4_1::PlainObjectBase>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:102:5)' and 'Eigen_SSE4_1::StorageOptions') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 905 | EIGEN_STATIC_ASSERT((EIGEN_IMPLIES(MaxRowsAtCompileTime==1 && MaxColsAtCompileTime!=1, (Options&RowMajor)==RowMajor) | ~~~~~~~^~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/Macros.h:954:38: note: expanded from macro 'EIGEN_IMPLIES' 954 | #define EIGEN_IMPLIES(a,b) (!(a) || (b)) | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: expanded from macro 'EIGEN_STATIC_ASSERT' 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:134:13: note: in instantiation of member function 'Eigen_SSE4_1::PlainObjectBase>::_check_template_params' requested here 134 | Base::_check_template_params(); | ^ /usr/include/c++/v1/array:169:29: note: in instantiation of member function 'Eigen_SSE4_1::Array::Array' requested here 169 | struct _LIBCPP_TEMPLATE_VIS array { | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:462: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:906:102: warning: bitwise operation between different enumeration types ('Eigen_SSE4_1::PlainObjectBase>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:102:5)' and 'Eigen_SSE4_1::StorageOptions') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 906 | && EIGEN_IMPLIES(MaxColsAtCompileTime==1 && MaxRowsAtCompileTime!=1, (Options&RowMajor)==0) | ~~~~~~~^~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/Macros.h:954:38: note: expanded from macro 'EIGEN_IMPLIES' 954 | #define EIGEN_IMPLIES(a,b) (!(a) || (b)) | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: expanded from macro 'EIGEN_STATIC_ASSERT' 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:462: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:905:102: warning: bitwise operation between different enumeration types ('Eigen_SSE4_1::PlainObjectBase>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:102:5)' and 'Eigen_SSE4_1::StorageOptions') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 905 | EIGEN_STATIC_ASSERT((EIGEN_IMPLIES(MaxRowsAtCompileTime==1 && MaxColsAtCompileTime!=1, (Options&RowMajor)==RowMajor) | ~~~~~~~^~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/Macros.h:954:38: note: expanded from macro 'EIGEN_IMPLIES' 954 | #define EIGEN_IMPLIES(a,b) (!(a) || (b)) | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: expanded from macro 'EIGEN_STATIC_ASSERT' 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:170:13: note: in instantiation of member function 'Eigen_SSE4_1::PlainObjectBase>::_check_template_params' requested here 170 | Base::_check_template_params(); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:61:26: note: in instantiation of function template specialization 'Eigen_SSE4_1::Array::Array' requested here 61 | Array f(0.0), d, t; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:462: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:906:102: warning: bitwise operation between different enumeration types ('Eigen_SSE4_1::PlainObjectBase>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:102:5)' and 'Eigen_SSE4_1::StorageOptions') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 906 | && EIGEN_IMPLIES(MaxColsAtCompileTime==1 && MaxRowsAtCompileTime!=1, (Options&RowMajor)==0) | ~~~~~~~^~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/Macros.h:954:38: note: expanded from macro 'EIGEN_IMPLIES' 954 | #define EIGEN_IMPLIES(a,b) (!(a) || (b)) | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: expanded from macro 'EIGEN_STATIC_ASSERT' 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_SSE4_1::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_SSE4_1::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_SSE4_1::internal::dense_assignment_loop>, Eigen_SSE4_1::internal::evaluator, Eigen_SSE4_1::Array>>, Eigen_SSE4_1::internal::assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_dense_assignment_loop, Eigen_SSE4_1::CwiseNullaryOp, Eigen_SSE4_1::Array>, Eigen_SSE4_1::internal::assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_SSE4_1::internal::Assignment, Eigen_SSE4_1::CwiseNullaryOp, Eigen_SSE4_1::Array>, Eigen_SSE4_1::internal::assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_assignment_no_alias, Eigen_SSE4_1::CwiseNullaryOp, Eigen_SSE4_1::Array>, Eigen_SSE4_1::internal::assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:782:3: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_assignment, Eigen_SSE4_1::CwiseNullaryOp, Eigen_SSE4_1::Array>, Eigen_SSE4_1::internal::assign_op>' requested here 782 | call_assignment(dst, src, internal::assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:714:17: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 714 | internal::call_assignment(this->derived(), other.derived()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:109:20: note: in instantiation of function template specialization 'Eigen_SSE4_1::PlainObjectBase>::_set, Eigen_SSE4_1::Array>>' requested here 109 | return Base::_set(other); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CwiseNullaryOp.h:327:20: note: in instantiation of function template specialization 'Eigen_SSE4_1::Array::operator=, Eigen_SSE4_1::Array>>' requested here 327 | return derived() = Constant(rows(), cols(), val); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:859:13: note: in instantiation of member function 'Eigen_SSE4_1::DenseBase>::setConstant' requested here 859 | Base::setConstant(val0); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:171:22: note: in instantiation of function template specialization 'Eigen_SSE4_1::PlainObjectBase>::_init1' requested here 171 | Base::template _init1(x); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:61:26: note: in instantiation of function template specialization 'Eigen_SSE4_1::Array::Array' requested here 61 | Array f(0.0), d, t; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:483: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:315:28: warning: arithmetic between different enumeration types ('Eigen_SSE4_1::internal::redux_evaluator>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:345:3)' and 'Eigen_SSE4_1::internal::redux_traits, Eigen_SSE4_1::internal::redux_evaluator>>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:31:3)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 315 | VectorizedSize = (Size / PacketSize) * PacketSize | ~~~~ ^ ~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:418:20: note: in instantiation of template class 'Eigen_SSE4_1::internal::redux_impl, Eigen_SSE4_1::internal::redux_evaluator>>' requested here 418 | return internal::redux_impl::run(thisEval, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:453:20: note: in instantiation of function template specialization 'Eigen_SSE4_1::DenseBase>::redux>' requested here 453 | return derived().redux(Eigen::internal::scalar_sum_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:82:21: note: in instantiation of member function 'Eigen_SSE4_1::DenseBase>::sum' requested here 82 | const float s = f.sum(); | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_SSE4_1::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_SSE4_1::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_SSE4_1::internal::dense_assignment_loop>, Eigen_SSE4_1::internal::evaluator>, Eigen_SSE4_1::internal::mul_assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_dense_assignment_loop, Eigen_SSE4_1::Array, Eigen_SSE4_1::internal::mul_assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_SSE4_1::internal::Assignment, Eigen_SSE4_1::Array, Eigen_SSE4_1::internal::mul_assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_assignment_no_alias, Eigen_SSE4_1::Array, Eigen_SSE4_1::internal::mul_assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/ArrayBase.h:207:3: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_assignment, Eigen_SSE4_1::Array, Eigen_SSE4_1::internal::mul_assign_op>' requested here 207 | call_assignment(derived(), other.derived(), internal::mul_assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:84:5: note: in instantiation of function template specialization 'Eigen_SSE4_1::ArrayBase>::operator*=>' requested here 84 | t *= d; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_SSE4_1::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_SSE4_1::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_SSE4_1::internal::dense_assignment_loop>, Eigen_SSE4_1::internal::evaluator, Eigen_SSE4_1::Array>>, Eigen_SSE4_1::internal::mul_assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_dense_assignment_loop, Eigen_SSE4_1::CwiseNullaryOp, Eigen_SSE4_1::Array>, Eigen_SSE4_1::internal::mul_assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_SSE4_1::internal::Assignment, Eigen_SSE4_1::CwiseNullaryOp, Eigen_SSE4_1::Array>, Eigen_SSE4_1::internal::mul_assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_assignment_no_alias, Eigen_SSE4_1::CwiseNullaryOp, Eigen_SSE4_1::Array>, Eigen_SSE4_1::internal::mul_assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/SelfCwiseBinaryOp.h:20:13: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_assignment, Eigen_SSE4_1::CwiseNullaryOp, Eigen_SSE4_1::Array>, Eigen_SSE4_1::internal::mul_assign_op>' requested here 20 | internal::call_assignment(this->derived(), PlainObject::Constant(rows(),cols(),other), internal::mul_assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:85:5: note: in instantiation of member function 'Eigen_SSE4_1::DenseBase>::operator*=' requested here 85 | f *= f2f; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_SSE4_1::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_SSE4_1::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_SSE4_1::internal::dense_assignment_loop>, Eigen_SSE4_1::internal::evaluator>, Eigen_SSE4_1::internal::add_assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_dense_assignment_loop, Eigen_SSE4_1::Array, Eigen_SSE4_1::internal::add_assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_SSE4_1::internal::Assignment, Eigen_SSE4_1::Array, Eigen_SSE4_1::internal::add_assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_assignment_no_alias, Eigen_SSE4_1::Array, Eigen_SSE4_1::internal::add_assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/ArrayBase.h:194:3: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_assignment, Eigen_SSE4_1::Array, Eigen_SSE4_1::internal::add_assign_op>' requested here 194 | call_assignment(derived(), other.derived(), internal::add_assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:86:5: note: in instantiation of function template specialization 'Eigen_SSE4_1::ArrayBase>::operator+=>' requested here 86 | f += t; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_SSE4_1::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_SSE4_1::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_SSE4_1::internal::dense_assignment_loop>, Eigen_SSE4_1::internal::evaluator, 50, 1>>, Eigen_SSE4_1::internal::mul_assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_dense_assignment_loop, Eigen_SSE4_1::Block, 50, 1>, Eigen_SSE4_1::internal::mul_assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_SSE4_1::internal::Assignment, Eigen_SSE4_1::Block, 50, 1>, Eigen_SSE4_1::internal::mul_assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_assignment_no_alias, Eigen_SSE4_1::Block, 50, 1>, Eigen_SSE4_1::internal::mul_assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/ArrayBase.h:207:3: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_assignment, Eigen_SSE4_1::Block, 50, 1>, Eigen_SSE4_1::internal::mul_assign_op>' requested here 207 | call_assignment(derived(), other.derived(), internal::mul_assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:88:5: note: in instantiation of function template specialization 'Eigen_SSE4_1::ArrayBase>::operator*=, 50, 1>>' requested here 88 | f *= e[(size_t)letter_mask(seq[i])].template segment(len - i, WINDOW); | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_SSE4_1::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_SSE4_1::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_SSE4_1::internal::dense_assignment_loop>, Eigen_SSE4_1::internal::evaluator>, Eigen_SSE4_1::internal::assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_dense_assignment_loop, Eigen_SSE4_1::Array, Eigen_SSE4_1::internal::assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_SSE4_1::internal::Assignment, Eigen_SSE4_1::Array, Eigen_SSE4_1::internal::assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_assignment_no_alias, Eigen_SSE4_1::Array, Eigen_SSE4_1::internal::assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:782:3: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_assignment, Eigen_SSE4_1::Array, Eigen_SSE4_1::internal::assign_op>' requested here 782 | call_assignment(dst, src, internal::assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:714:17: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_assignment, Eigen_SSE4_1::Array>' requested here 714 | internal::call_assignment(this->derived(), other.derived()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:118:20: note: in instantiation of function template specialization 'Eigen_SSE4_1::PlainObjectBase>::_set>' requested here 118 | return Base::_set(other); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:124:5: note: in instantiation of member function 'Eigen_SSE4_1::Array::operator=' requested here 124 | t = f; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_SSE4_1::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_SSE4_1::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_SSE4_1::internal::dense_assignment_loop>, Eigen_SSE4_1::internal::evaluator, Eigen_SSE4_1::Array>>, Eigen_SSE4_1::internal::add_assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_dense_assignment_loop, Eigen_SSE4_1::CwiseNullaryOp, Eigen_SSE4_1::Array>, Eigen_SSE4_1::internal::add_assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_SSE4_1::internal::Assignment, Eigen_SSE4_1::CwiseNullaryOp, Eigen_SSE4_1::Array>, Eigen_SSE4_1::internal::add_assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_assignment_no_alias, Eigen_SSE4_1::CwiseNullaryOp, Eigen_SSE4_1::Array>, Eigen_SSE4_1::internal::add_assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/SelfCwiseBinaryOp.h:27:13: note: in instantiation of function template specialization 'Eigen_SSE4_1::internal::call_assignment, Eigen_SSE4_1::CwiseNullaryOp, Eigen_SSE4_1::Array>, Eigen_SSE4_1::internal::add_assign_op>' requested here 27 | internal::call_assignment(this->derived(), PlainObject::Constant(rows(),cols(),other), internal::add_assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:127:5: note: in instantiation of member function 'Eigen_SSE4_1::ArrayBase>::operator+=' requested here 127 | f += p_repeat_end * b; | ^ 12 warnings generated. [ 3% 22/177] /usr/local/libexec/ccache/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_GENERIC -DARCH_ID=0 -DEigen=Eigen_GENERIC -MD -MT CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -MF CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o.d -o CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o -c /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/dp/score_profile.cpp [ 4% 23/177] /usr/local/libexec/ccache/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_SSE4_1 -DARCH_ID=1 -mssse3 -mpopcnt -msse4.1 -DEigen=Eigen_SSE4_1 -MD -MT CMakeFiles/arch_sse4_1.dir/src/search/stage1_2.cpp.o -MF CMakeFiles/arch_sse4_1.dir/src/search/stage1_2.cpp.o.d -o CMakeFiles/arch_sse4_1.dir/src/search/stage1_2.cpp.o -c /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/search/stage1_2.cpp [ 5% 24/177] /usr/local/libexec/ccache/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_SSE4_1 -DARCH_ID=1 -mssse3 -mpopcnt -msse4.1 -DEigen=Eigen_SSE4_1 -MD -MT CMakeFiles/arch_sse4_1.dir/src/tools/benchmark.cpp.o -MF CMakeFiles/arch_sse4_1.dir/src/tools/benchmark.cpp.o.d -o 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-Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -DDISPATCH_ARCH=ARCH_AVX2 -DARCH_ID=2 -mssse3 -mpopcnt -msse4.1 -msse4.2 -mavx -mavx2 -DEigen=Eigen_AVX2 -MD -MT CMakeFiles/arch_avx2.dir/src/masking/tantan.cpp.o -MF CMakeFiles/arch_avx2.dir/src/masking/tantan.cpp.o.d -o CMakeFiles/arch_avx2.dir/src/masking/tantan.cpp.o -c /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:462: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:905:102: warning: bitwise operation between different enumeration types ('Eigen_AVX2::PlainObjectBase>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:102:5)' and 'Eigen_AVX2::StorageOptions') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 905 | EIGEN_STATIC_ASSERT((EIGEN_IMPLIES(MaxRowsAtCompileTime==1 && MaxColsAtCompileTime!=1, (Options&RowMajor)==RowMajor) | ~~~~~~~^~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/Macros.h:954:38: note: expanded from macro 'EIGEN_IMPLIES' 954 | #define EIGEN_IMPLIES(a,b) (!(a) || (b)) | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: expanded from macro 'EIGEN_STATIC_ASSERT' 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:134:13: note: in instantiation of member function 'Eigen_AVX2::PlainObjectBase>::_check_template_params' requested here 134 | Base::_check_template_params(); | ^ /usr/include/c++/v1/array:169:29: note: in instantiation of member function 'Eigen_AVX2::Array::Array' requested here 169 | struct _LIBCPP_TEMPLATE_VIS array { | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:462: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:906:102: warning: bitwise operation between different enumeration types ('Eigen_AVX2::PlainObjectBase>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:102:5)' and 'Eigen_AVX2::StorageOptions') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 906 | && EIGEN_IMPLIES(MaxColsAtCompileTime==1 && MaxRowsAtCompileTime!=1, (Options&RowMajor)==0) | ~~~~~~~^~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/Macros.h:954:38: note: expanded from macro 'EIGEN_IMPLIES' 954 | #define EIGEN_IMPLIES(a,b) (!(a) || (b)) | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: expanded from macro 'EIGEN_STATIC_ASSERT' 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:462: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:905:102: warning: bitwise operation between different enumeration types ('Eigen_AVX2::PlainObjectBase>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:102:5)' and 'Eigen_AVX2::StorageOptions') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 905 | EIGEN_STATIC_ASSERT((EIGEN_IMPLIES(MaxRowsAtCompileTime==1 && MaxColsAtCompileTime!=1, (Options&RowMajor)==RowMajor) | ~~~~~~~^~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/Macros.h:954:38: note: expanded from macro 'EIGEN_IMPLIES' 954 | #define EIGEN_IMPLIES(a,b) (!(a) || (b)) | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: expanded from macro 'EIGEN_STATIC_ASSERT' 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:170:13: note: in instantiation of member function 'Eigen_AVX2::PlainObjectBase>::_check_template_params' requested here 170 | Base::_check_template_params(); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:61:26: note: in instantiation of function template specialization 'Eigen_AVX2::Array::Array' requested here 61 | Array f(0.0), d, t; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:462: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:906:102: warning: bitwise operation between different enumeration types ('Eigen_AVX2::PlainObjectBase>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:102:5)' and 'Eigen_AVX2::StorageOptions') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 906 | && EIGEN_IMPLIES(MaxColsAtCompileTime==1 && MaxRowsAtCompileTime!=1, (Options&RowMajor)==0) | ~~~~~~~^~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/Macros.h:954:38: note: expanded from macro 'EIGEN_IMPLIES' 954 | #define EIGEN_IMPLIES(a,b) (!(a) || (b)) | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: expanded from macro 'EIGEN_STATIC_ASSERT' 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_AVX2::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_AVX2::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_AVX2::internal::dense_assignment_loop>, Eigen_AVX2::internal::evaluator, Eigen_AVX2::Array>>, Eigen_AVX2::internal::assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_dense_assignment_loop, Eigen_AVX2::CwiseNullaryOp, Eigen_AVX2::Array>, Eigen_AVX2::internal::assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_AVX2::internal::Assignment, Eigen_AVX2::CwiseNullaryOp, Eigen_AVX2::Array>, Eigen_AVX2::internal::assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_assignment_no_alias, Eigen_AVX2::CwiseNullaryOp, Eigen_AVX2::Array>, Eigen_AVX2::internal::assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:782:3: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_assignment, Eigen_AVX2::CwiseNullaryOp, Eigen_AVX2::Array>, Eigen_AVX2::internal::assign_op>' requested here 782 | call_assignment(dst, src, internal::assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:714:17: note: (skipping 1 context in backtrace; use -ftemplate-backtrace-limit=0 to see all) 714 | internal::call_assignment(this->derived(), other.derived()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:109:20: note: in instantiation of function template specialization 'Eigen_AVX2::PlainObjectBase>::_set, Eigen_AVX2::Array>>' requested here 109 | return Base::_set(other); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CwiseNullaryOp.h:327:20: note: in instantiation of function template specialization 'Eigen_AVX2::Array::operator=, Eigen_AVX2::Array>>' requested here 327 | return derived() = Constant(rows(), cols(), val); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:859:13: note: in instantiation of member function 'Eigen_AVX2::DenseBase>::setConstant' requested here 859 | Base::setConstant(val0); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:171:22: note: in instantiation of function template specialization 'Eigen_AVX2::PlainObjectBase>::_init1' requested here 171 | Base::template _init1(x); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:61:26: note: in instantiation of function template specialization 'Eigen_AVX2::Array::Array' requested here 61 | Array f(0.0), d, t; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:483: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:315:28: warning: arithmetic between different enumeration types ('Eigen_AVX2::internal::redux_evaluator>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:345:3)' and 'Eigen_AVX2::internal::redux_traits, Eigen_AVX2::internal::redux_evaluator>>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:31:3)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 315 | VectorizedSize = (Size / PacketSize) * PacketSize | ~~~~ ^ ~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:418:20: note: in instantiation of template class 'Eigen_AVX2::internal::redux_impl, Eigen_AVX2::internal::redux_evaluator>>' requested here 418 | return internal::redux_impl::run(thisEval, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:453:20: note: in instantiation of function template specialization 'Eigen_AVX2::DenseBase>::redux>' requested here 453 | return derived().redux(Eigen::internal::scalar_sum_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:82:21: note: in instantiation of member function 'Eigen_AVX2::DenseBase>::sum' requested here 82 | const float s = f.sum(); | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_AVX2::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_AVX2::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_AVX2::internal::dense_assignment_loop>, Eigen_AVX2::internal::evaluator>, Eigen_AVX2::internal::mul_assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_dense_assignment_loop, Eigen_AVX2::Array, Eigen_AVX2::internal::mul_assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_AVX2::internal::Assignment, Eigen_AVX2::Array, Eigen_AVX2::internal::mul_assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_assignment_no_alias, Eigen_AVX2::Array, Eigen_AVX2::internal::mul_assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/ArrayBase.h:207:3: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_assignment, Eigen_AVX2::Array, Eigen_AVX2::internal::mul_assign_op>' requested here 207 | call_assignment(derived(), other.derived(), internal::mul_assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:84:5: note: in instantiation of function template specialization 'Eigen_AVX2::ArrayBase>::operator*=>' requested here 84 | t *= d; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_AVX2::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_AVX2::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_AVX2::internal::dense_assignment_loop>, Eigen_AVX2::internal::evaluator, Eigen_AVX2::Array>>, Eigen_AVX2::internal::mul_assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_dense_assignment_loop, Eigen_AVX2::CwiseNullaryOp, Eigen_AVX2::Array>, Eigen_AVX2::internal::mul_assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_AVX2::internal::Assignment, Eigen_AVX2::CwiseNullaryOp, Eigen_AVX2::Array>, Eigen_AVX2::internal::mul_assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_assignment_no_alias, Eigen_AVX2::CwiseNullaryOp, Eigen_AVX2::Array>, Eigen_AVX2::internal::mul_assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/SelfCwiseBinaryOp.h:20:13: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_assignment, Eigen_AVX2::CwiseNullaryOp, Eigen_AVX2::Array>, Eigen_AVX2::internal::mul_assign_op>' requested here 20 | internal::call_assignment(this->derived(), PlainObject::Constant(rows(),cols(),other), internal::mul_assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:85:5: note: in instantiation of member function 'Eigen_AVX2::DenseBase>::operator*=' requested here 85 | f *= f2f; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_AVX2::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_AVX2::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_AVX2::internal::dense_assignment_loop>, Eigen_AVX2::internal::evaluator>, Eigen_AVX2::internal::add_assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_dense_assignment_loop, Eigen_AVX2::Array, Eigen_AVX2::internal::add_assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_AVX2::internal::Assignment, Eigen_AVX2::Array, Eigen_AVX2::internal::add_assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_assignment_no_alias, Eigen_AVX2::Array, Eigen_AVX2::internal::add_assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/ArrayBase.h:194:3: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_assignment, Eigen_AVX2::Array, Eigen_AVX2::internal::add_assign_op>' requested here 194 | call_assignment(derived(), other.derived(), internal::add_assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:86:5: note: in instantiation of function template specialization 'Eigen_AVX2::ArrayBase>::operator+=>' requested here 86 | f += t; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_AVX2::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_AVX2::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_AVX2::internal::dense_assignment_loop>, Eigen_AVX2::internal::evaluator, 50, 1>>, Eigen_AVX2::internal::mul_assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_dense_assignment_loop, Eigen_AVX2::Block, 50, 1>, Eigen_AVX2::internal::mul_assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_AVX2::internal::Assignment, Eigen_AVX2::Block, 50, 1>, Eigen_AVX2::internal::mul_assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_assignment_no_alias, Eigen_AVX2::Block, 50, 1>, Eigen_AVX2::internal::mul_assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/ArrayBase.h:207:3: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_assignment, Eigen_AVX2::Block, 50, 1>, Eigen_AVX2::internal::mul_assign_op>' requested here 207 | call_assignment(derived(), other.derived(), internal::mul_assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:88:5: note: in instantiation of function template specialization 'Eigen_AVX2::ArrayBase>::operator*=, 50, 1>>' requested here 88 | f *= e[(size_t)letter_mask(seq[i])].template segment(len - i, WINDOW); | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_AVX2::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_AVX2::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_AVX2::internal::dense_assignment_loop>, Eigen_AVX2::internal::evaluator>, Eigen_AVX2::internal::assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_dense_assignment_loop, Eigen_AVX2::Array, Eigen_AVX2::internal::assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_AVX2::internal::Assignment, Eigen_AVX2::Array, Eigen_AVX2::internal::assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_assignment_no_alias, Eigen_AVX2::Array, Eigen_AVX2::internal::assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:782:3: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_assignment, Eigen_AVX2::Array, Eigen_AVX2::internal::assign_op>' requested here 782 | call_assignment(dst, src, internal::assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:714:17: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_assignment, Eigen_AVX2::Array>' requested here 714 | internal::call_assignment(this->derived(), other.derived()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:118:20: note: in instantiation of function template specialization 'Eigen_AVX2::PlainObjectBase>::_set>' requested here 118 | return Base::_set(other); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:124:5: note: in instantiation of member function 'Eigen_AVX2::Array::operator=' requested here 124 | t = f; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:27: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:446: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:432:31: warning: arithmetic between different enumeration types ('Eigen_AVX2::Array::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Array.h:51:5)' and 'Eigen_AVX2::internal::unpacket_traits<__attribute__((__vector_size__(4 * sizeof(float)))) float>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:161:68)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 432 | alignedSize = (size/packetSize)*packetSize }; | ~~~~^~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:741:34: note: in instantiation of member function 'Eigen_AVX2::internal::dense_assignment_loop>, Eigen_AVX2::internal::evaluator, Eigen_AVX2::Array>>, Eigen_AVX2::internal::add_assign_op>>::run' requested here 741 | dense_assignment_loop::run(kernel); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_dense_assignment_loop, Eigen_AVX2::CwiseNullaryOp, Eigen_AVX2::Array>, Eigen_AVX2::internal::add_assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen_AVX2::internal::Assignment, Eigen_AVX2::CwiseNullaryOp, Eigen_AVX2::Array>, Eigen_AVX2::internal::add_assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_assignment_no_alias, Eigen_AVX2::CwiseNullaryOp, Eigen_AVX2::Array>, Eigen_AVX2::internal::add_assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/SelfCwiseBinaryOp.h:27:13: note: in instantiation of function template specialization 'Eigen_AVX2::internal::call_assignment, Eigen_AVX2::CwiseNullaryOp, Eigen_AVX2::Array>, Eigen_AVX2::internal::add_assign_op>' requested here 27 | internal::call_assignment(this->derived(), PlainObject::Constant(rows(),cols(),other), internal::add_assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/masking/tantan.cpp:127:5: note: in instantiation of member function 'Eigen_AVX2::ArrayBase>::operator+=' requested here 127 | f += p_repeat_end * b; | ^ 12 warnings generated. 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CMakeFiles/diamond.dir/src/cluster/cascaded/wrapper.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/cascaded/wrapper.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/cascaded/wrapper.cpp.o -c /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/cluster/cascaded/wrapper.cpp [ 95% 176/177] /usr/local/libexec/ccache/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/cluster/external/align.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/external/align.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/external/align.cpp.o -c /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/cluster/external/align.cpp [ 96% 176/177] /usr/local/libexec/ccache/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/util/tsv/table.cpp.o -MF 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CMakeFiles/diamond.dir/src/search/hit_buffer.cpp.o -c /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/search/hit_buffer.cpp [ 97% 176/177] /usr/local/libexec/ccache/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/cluster/external/output.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/external/output.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/external/output.cpp.o -c /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/cluster/external/output.cpp [ 97% 176/177] /usr/local/libexec/ccache/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/cluster/external/cluster.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/external/cluster.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/external/cluster.cpp.o -c /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/cluster/external/cluster.cpp [ 98% 176/177] /usr/local/libexec/ccache/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/util/algo/mcl.cpp.o -MF CMakeFiles/diamond.dir/src/util/algo/mcl.cpp.o.d -o CMakeFiles/diamond.dir/src/util/algo/mcl.cpp.o -c /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/util/algo/mcl.cpp In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/util/algo/mcl.cpp:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Dense:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:462: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:905:102: warning: bitwise operation between different enumeration types ('Eigen::PlainObjectBase>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:102:5)' and 'Eigen::StorageOptions') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 905 | EIGEN_STATIC_ASSERT((EIGEN_IMPLIES(MaxRowsAtCompileTime==1 && MaxColsAtCompileTime!=1, (Options&RowMajor)==RowMajor) | ~~~~~~~^~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/Macros.h:954:38: note: expanded from macro 'EIGEN_IMPLIES' 954 | #define EIGEN_IMPLIES(a,b) (!(a) || (b)) | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: expanded from macro 'EIGEN_STATIC_ASSERT' 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:535:7: note: in instantiation of member function 'Eigen::PlainObjectBase>::_check_template_params' requested here 535 | _check_template_params(); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Matrix.h:377:9: note: in instantiation of function template specialization 'Eigen::PlainObjectBase>::PlainObjectBase, Eigen::Matrix>>' requested here 377 | : Base(other.derived()) | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/util/algo/mcl.cpp:29:23: note: in instantiation of function template specialization 'Eigen::Matrix::Matrix, Eigen::Matrix>>' requested here 29 | MatrixXd result = MatrixXd::Identity(n, n); | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/util/algo/mcl.cpp:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Dense:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:462: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:906:102: warning: bitwise operation between different enumeration types ('Eigen::PlainObjectBase>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:102:5)' and 'Eigen::StorageOptions') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 906 | && EIGEN_IMPLIES(MaxColsAtCompileTime==1 && MaxRowsAtCompileTime!=1, (Options&RowMajor)==0) | ~~~~~~~^~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/Macros.h:954:38: note: expanded from macro 'EIGEN_IMPLIES' 954 | #define EIGEN_IMPLIES(a,b) (!(a) || (b)) | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/util/StaticAssert.h:33:54: note: expanded from macro 'EIGEN_STATIC_ASSERT' 33 | #define EIGEN_STATIC_ASSERT(X,MSG) static_assert(X,#MSG); | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/util/algo/mcl.cpp:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Dense:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:498: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/ProductEvaluators.h:524:61: warning: arithmetic between different enumeration types ('Eigen::GenericNumTraits::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/NumTraits.h:90:3)' and 'Eigen::internal::evaluator>>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:134:3)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 524 | : InnerSize * (NumTraits::MulCost + LhsCoeffReadCost + RhsCoeffReadCost) | ~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/ProductEvaluators.h:30:11: note: in instantiation of template class 'Eigen::internal::product_evaluator, Eigen::Matrix, 1>>' requested here 30 | : public product_evaluator > | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:730:20: note: in instantiation of template class 'Eigen::internal::evaluator, Eigen::Matrix, 1>>' requested here 730 | SrcEvaluatorType srcEvaluator(src); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: in instantiation of function template specialization 'Eigen::internal::call_dense_assignment_loop, Eigen::Product, Eigen::Matrix, 1>, Eigen::internal::assign_op>' requested here 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:836:46: note: in instantiation of member function 'Eigen::internal::Assignment, Eigen::Product, Eigen::Matrix, 1>, Eigen::internal::assign_op>::run' requested here 836 | Assignment::run(actualDst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/ProductEvaluators.h:436:5: note: in instantiation of function template specialization 'Eigen::internal::call_assignment_no_alias, Eigen::Product, Eigen::Matrix, 1>, Eigen::internal::assign_op>' requested here 436 | call_assignment_no_alias(dst, lhs.lazyProduct(rhs), func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/products/GeneralMatrixMatrix.h:433:20: note: (skipping 6 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) 433 | lazyproduct::eval_dynamic(dst, lhs, rhs, internal::assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:796:41: note: in instantiation of function template specialization 'Eigen::Matrix::Matrix, Eigen::Matrix>>' requested here 796 | typename plain_matrix_type::type tmp(src); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:782:3: note: in instantiation of function template specialization 'Eigen::internal::call_assignment, Eigen::Product, Eigen::Matrix>, Eigen::internal::assign_op>' requested here 782 | call_assignment(dst, src, internal::assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:714:17: note: in instantiation of function template specialization 'Eigen::internal::call_assignment, Eigen::Product, Eigen::Matrix>>' requested here 714 | internal::call_assignment(this->derived(), other.derived()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Matrix.h:225:20: note: in instantiation of function template specialization 'Eigen::PlainObjectBase>::_set, Eigen::Matrix>>' requested here 225 | return Base::_set(other); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/util/algo/mcl.cpp:31:31: note: in instantiation of function template specialization 'Eigen::Matrix::operator=, Eigen::Matrix>>' requested here 31 | if (power & 1) result = result * base; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/util/algo/mcl.cpp:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Dense:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:498: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/ProductEvaluators.h:573:39: warning: arithmetic between different enumeration types ('Eigen::internal::product_evaluator, Eigen::Matrix, 1>>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/ProductEvaluators.h:507:3)' and 'Eigen::internal::packet_traits::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/arch/SSE/PacketMath.h:127:3)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 573 | && (InnerSize % packet_traits::size == 0) | ~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/util/algo/mcl.cpp:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Dense:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:445: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:681:51: warning: arithmetic between different enumeration types ('Eigen::internal::unary_evaluator, 1>>>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:269:3)' and 'Eigen::internal::evaluator, -1, 1, true>>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:960:3)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 681 | CoeffReadCost = evaluator::CoeffReadCost + evaluator::CoeffReadCost + functor_traits::Cost, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:666:12: note: in instantiation of template class 'Eigen::internal::binary_evaluator, const Eigen::Transpose, 1>>, const Eigen::Block, -1, 1, true>>>' requested here 666 | : public binary_evaluator > | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:349:13: note: in instantiation of template class 'Eigen::internal::evaluator, const Eigen::Transpose, 1>>, const Eigen::Block, -1, 1, true>>>' requested here 349 | Flags = evaluator::Flags & ~DirectAccessBit, | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:416:17: note: in instantiation of template class 'Eigen::internal::redux_evaluator, const Eigen::Transpose, 1>>, const Eigen::Block, -1, 1, true>>>' requested here 416 | ThisEvaluator thisEval(derived()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:453:20: note: in instantiation of function template specialization 'Eigen::DenseBase, const Eigen::Transpose, 1>>, const Eigen::Block, -1, 1, true>>>::redux>' requested here 453 | return derived().redux(Eigen::internal::scalar_sum_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/ProductEvaluators.h:578:72: note: in instantiation of member function 'Eigen::DenseBase, const Eigen::Transpose, 1>>, const Eigen::Block, -1, 1, true>>>::sum' requested here 578 | return (m_lhs.row(row).transpose().cwiseProduct( m_rhs.col(col) )).sum(); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:631:58: note: (skipping 13 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) 631 | m_functor.assignCoeff(m_dst.coeffRef(row,col), m_src.coeff(row,col)); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:796:41: note: in instantiation of function template specialization 'Eigen::Matrix::Matrix, Eigen::Matrix>>' requested here 796 | typename plain_matrix_type::type tmp(src); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:782:3: note: in instantiation of function template specialization 'Eigen::internal::call_assignment, Eigen::Product, Eigen::Matrix>, Eigen::internal::assign_op>' requested here 782 | call_assignment(dst, src, internal::assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:714:17: note: in instantiation of function template specialization 'Eigen::internal::call_assignment, Eigen::Product, Eigen::Matrix>>' requested here 714 | internal::call_assignment(this->derived(), other.derived()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Matrix.h:225:20: note: in instantiation of function template specialization 'Eigen::PlainObjectBase>::_set, Eigen::Matrix>>' requested here 225 | return Base::_set(other); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/util/algo/mcl.cpp:31:31: note: in instantiation of function template specialization 'Eigen::Matrix::operator=, Eigen::Matrix>>' requested here 31 | if (power & 1) result = result * base; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/util/algo/mcl.cpp:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Dense:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:496: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1120:22: warning: arithmetic between different enumeration types ('(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:908:5)' and 'Eigen::internal::gebp_kernel, 4, 4>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:878:3)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 1120 | blB += pk*RhsProgress; | ~~^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/products/GeneralMatrixMatrix.h:196:11: note: in instantiation of member function 'Eigen::internal::gebp_kernel, 4, 4>::operator()' requested here 196 | gebp(res.getSubMapper(i2, j2), blockA, blockB, actual_mc, actual_kc, actual_nc, alpha); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/products/GeneralMatrixMatrix.h:228:11: note: in instantiation of member function 'Eigen::internal::general_matrix_matrix_product::run' requested here 228 | Gemm::run(rows, cols, m_lhs.cols(), | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/products/Parallelizer.h:98:3: note: in instantiation of member function 'Eigen::internal::gemm_functor, Eigen::Matrix, Eigen::Matrix, Eigen::Matrix, Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1>>::operator()' requested here 98 | func(0,rows, 0,cols); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/products/GeneralMatrixMatrix.h:486:15: note: in instantiation of function template specialization 'Eigen::internal::parallelize_gemm, Eigen::Matrix, Eigen::Matrix, Eigen::Matrix, Eigen::internal::gemm_blocking_space<0, double, double, -1, -1, -1>>, long>' requested here 486 | internal::parallelize_gemm<(Dest::MaxRowsAtCompileTime>32 || Dest::MaxRowsAtCompileTime==Dynamic)> | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/products/GeneralMatrixMatrix.h:437:7: note: in instantiation of function template specialization 'Eigen::internal::generic_product_impl, Eigen::Matrix>::scaleAndAddTo>' requested here 437 | scaleAndAddTo(dst, lhs, rhs, Scalar(1)); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/ProductEvaluators.h:148:37: note: (skipping 5 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) 148 | generic_product_impl::evalTo(dst, src.lhs(), src.rhs()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:796:41: note: in instantiation of function template specialization 'Eigen::Matrix::Matrix, Eigen::Matrix>>' requested here 796 | typename plain_matrix_type::type tmp(src); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:782:3: note: in instantiation of function template specialization 'Eigen::internal::call_assignment, Eigen::Product, Eigen::Matrix>, Eigen::internal::assign_op>' requested here 782 | call_assignment(dst, src, internal::assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:714:17: note: in instantiation of function template specialization 'Eigen::internal::call_assignment, Eigen::Product, Eigen::Matrix>>' requested here 714 | internal::call_assignment(this->derived(), other.derived()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Matrix.h:225:20: note: in instantiation of function template specialization 'Eigen::PlainObjectBase>::_set, Eigen::Matrix>>' requested here 225 | return Base::_set(other); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/util/algo/mcl.cpp:31:31: note: in instantiation of function template specialization 'Eigen::Matrix::operator=, Eigen::Matrix>>' requested here 31 | if (power & 1) result = result * base; | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/util/algo/mcl.cpp:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Dense:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:496: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1330:22: warning: arithmetic between different enumeration types ('(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:908:5)' and 'Eigen::internal::gebp_kernel, 4, 4>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:878:3)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 1330 | blB += pk*RhsProgress; | ~~^~~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:1498:22: warning: arithmetic between different enumeration types ('(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:908:5)' and 'Eigen::internal::gebp_kernel, 4, 4>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/products/GeneralBlockPanelKernel.h:878:3)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 1498 | blB += pk*RhsProgress; | ~~^~~~~~~~~~~~ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/util/algo/mcl.cpp:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Dense:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:445: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:681:51: warning: arithmetic between different enumeration types ('Eigen::internal::evaluator_wrapper_base>>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:1337:3)' and 'Eigen::internal::evaluator, const Eigen::Array>>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:461:3)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 681 | CoeffReadCost = evaluator::CoeffReadCost + evaluator::CoeffReadCost + functor_traits::Cost, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:666:12: note: in instantiation of template class 'Eigen::internal::binary_evaluator, const Eigen::ArrayWrapper>, const Eigen::CwiseNullaryOp, const Eigen::Array>>>' requested here 666 | : public binary_evaluator > | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:1338:21: note: in instantiation of template class 'Eigen::internal::evaluator, const Eigen::ArrayWrapper>, const Eigen::CwiseNullaryOp, const Eigen::Array>>>' requested here 1338 | CoeffReadCost = evaluator::CoeffReadCost, | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:1406:5: note: in instantiation of template class 'Eigen::internal::evaluator_wrapper_base, const Eigen::ArrayWrapper>, const Eigen::CwiseNullaryOp, const Eigen::Array>>>>' requested here 1406 | : evaluator_wrapper_base > | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:90:27: note: in instantiation of template class 'Eigen::internal::unary_evaluator, const Eigen::ArrayWrapper>, const Eigen::CwiseNullaryOp, const Eigen::Array>>>>' requested here 90 | struct evaluator : public unary_evaluator | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:730:20: note: in instantiation of template class 'Eigen::internal::evaluator, const Eigen::ArrayWrapper>, const Eigen::CwiseNullaryOp, const Eigen::Array>>>>' requested here 730 | SrcEvaluatorType srcEvaluator(src); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:879:5: note: (skipping 2 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all) 879 | call_dense_assignment_loop(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:804:3: note: in instantiation of function template specialization 'Eigen::internal::call_assignment_no_alias, Eigen::MatrixWrapper, const Eigen::ArrayWrapper>, const Eigen::CwiseNullaryOp, const Eigen::Array>>>, Eigen::internal::assign_op>' requested here 804 | call_assignment_no_alias(dst, src, func); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/AssignEvaluator.h:782:3: note: in instantiation of function template specialization 'Eigen::internal::call_assignment, Eigen::MatrixWrapper, const Eigen::ArrayWrapper>, const Eigen::CwiseNullaryOp, const Eigen::Array>>>, Eigen::internal::assign_op>' requested here 782 | call_assignment(dst, src, internal::assign_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/PlainObjectBase.h:714:17: note: in instantiation of function template specialization 'Eigen::internal::call_assignment, Eigen::MatrixWrapper, const Eigen::ArrayWrapper>, const Eigen::CwiseNullaryOp, const Eigen::Array>>>>' requested here 714 | internal::call_assignment(this->derived(), other.derived()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Matrix.h:225:20: note: in instantiation of function template specialization 'Eigen::PlainObjectBase>::_set, const Eigen::ArrayWrapper>, const Eigen::CwiseNullaryOp, const Eigen::Array>>>>' requested here 225 | return Base::_set(other); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/util/algo/mcl.cpp:44:7: note: in instantiation of function template specialization 'Eigen::Matrix::operator=, const Eigen::ArrayWrapper>, const Eigen::CwiseNullaryOp, const Eigen::Array>>>>' requested here 44 | M = M.array().pow(inflation).matrix(); | ^ In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/util/algo/mcl.cpp:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Dense:1: In file included from /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/Core:445: /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:522:55: warning: arithmetic between different enumeration types ('Eigen::internal::binary_evaluator, const Eigen::Matrix, const Eigen::Matrix>>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:680:3)' and 'Eigen::internal::functor_traits>::(unnamed enum at /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/functors/UnaryFunctors.h:52:3)') is deprecated [-Wdeprecated-anon-enum-enum-conversion] 522 | CoeffReadCost = evaluator::CoeffReadCost + functor_traits::Cost, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/CoreEvaluators.h:90:27: note: in instantiation of template class 'Eigen::internal::unary_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix>>>' requested here 90 | struct evaluator : public unary_evaluator | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:349:13: note: in instantiation of template class 'Eigen::internal::evaluator, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix>>>' requested here 349 | Flags = evaluator::Flags & ~DirectAccessBit, | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:416:17: note: in instantiation of template class 'Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix>>>' requested here 416 | ThisEvaluator thisEval(derived()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib/Eigen/src/Core/Redux.h:438:20: note: in instantiation of function template specialization 'Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix>>>::redux>' requested here 438 | return derived().redux(Eigen::internal::scalar_max_op()); | ^ /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/util/algo/mcl.cpp:55:32: note: in instantiation of member function 'Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::Matrix, const Eigen::Matrix>>>::maxCoeff' requested here 55 | return ((A - B).cwiseAbs().maxCoeff() < eps); | ^ 10 warnings generated. [ 98% 176/177] /usr/local/libexec/ccache/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/util/algo/pagerank.cpp.o -MF CMakeFiles/diamond.dir/src/util/algo/pagerank.cpp.o.d -o CMakeFiles/diamond.dir/src/util/algo/pagerank.cpp.o -c /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/util/algo/pagerank.cpp [ 99% 176/177] /usr/local/libexec/ccache/c++ -DLEFTMOST_SEED_FILTER -DMAX_SHAPE_LEN=19 -DSEQ_MASK -DSTRICT_BAND -DWITH_AVX2 -DWITH_SSE4_1 -D_ITERATOR_DEBUG_LEVEL=0 -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src -I/wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/lib -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -MD -MT CMakeFiles/diamond.dir/src/cluster/external/external.cpp.o -MF CMakeFiles/diamond.dir/src/cluster/external/external.cpp.o.d -o CMakeFiles/diamond.dir/src/cluster/external/external.cpp.o -c /wrkdirs/usr/ports/biology/diamond/work/diamond-2.1.14/src/cluster/external/external.cpp [100% 177/177] : && /usr/local/libexec/ccache/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wall -Wextra -Wno-implicit-fallthrough -Wreturn-type -Wno-unused -Wno-unused-parameter -Wno-unused-variable -Wno-uninitialized -Wno-deprecated-copy -Wno-unknown-warning-option -Wno-pragma-clang-attribute -Wno-overloaded-virtual -Wno-missing-braces -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -Xlinker --dependency-file=CMakeFiles/diamond.dir/link.d CMakeFiles/arch_generic.dir/src/dp/swipe/banded_3frame_swipe.cpp.o CMakeFiles/arch_generic.dir/src/search/stage1_2.cpp.o CMakeFiles/arch_generic.dir/src/tools/benchmark.cpp.o CMakeFiles/arch_generic.dir/src/dp/swipe/swipe_wrapper.cpp.o CMakeFiles/arch_generic.dir/src/masking/tantan.cpp.o CMakeFiles/arch_generic.dir/src/dp/scan_diags.cpp.o CMakeFiles/arch_generic.dir/src/dp/ungapped_simd.cpp.o CMakeFiles/arch_generic.dir/src/dp/swipe/anchored_wrapper.cpp.o CMakeFiles/arch_generic.dir/src/dp/score_profile.cpp.o CMakeFiles/arch_sse4_1.dir/src/dp/swipe/banded_3frame_swipe.cpp.o 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=========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for diamond-2.1.14 ===> Generating temporary packing list [ 0% 1/1] cd /wrkdirs/usr/ports/biology/diamond/work/.build && /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /wrkdirs/usr/ports/biology/diamond/work/stage/usr/local/bin/diamond ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-10-01T03:40:17+0000' 'PKG_NOTE_ports_top_git_hash=a936fb9b16ba' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=483bf7a59028' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for diamond-2.1.14 ===> Building diamond-2.1.14 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for diamond-2.1.14 build of biology/diamond | diamond-2.1.14 ended at Tue Sep 30 23:44:06 EDT 2025 build time: 00:03:50