=>> Building biology/cytoscape build started at Thu Feb 19 14:49:59 EST 2026 port directory: /usr/ports/biology/cytoscape package name: cytoscape-3.6.1 building for: FreeBSD pkg.DaveG.ca 15.0-RELEASE-p3 FreeBSD 15.0-RELEASE-p3 1500068 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2725 Feb 17 19:06 /usr/ports/biology/cytoscape/Makefile Ports top last git commit: eac71dbf758c Ports top unclean checkout: no Port dir last git commit: 55cb6cd667eb Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1500068 Job Id: 09 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500068 UNAME_v=FreeBSD 15.0-RELEASE-p3 1500068 UNAME_r=15.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/09/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_15_0_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/cytoscape/work/.cache HOME=/wrkdirs/usr/ports/biology/cytoscape/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cytoscape/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/cytoscape/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- JAVA_HOME=/usr/local/openjdk8 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cytoscape/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/cytoscape/work/.cache HOME=/wrkdirs/usr/ports/biology/cytoscape/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cytoscape/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/cytoscape/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cytoscape" EXAMPLESDIR="share/examples/cytoscape" DATADIR="share/cytoscape" WWWDIR="www/cytoscape" ETCDIR="etc/cytoscape" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="8" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cytoscape DOCSDIR=/usr/local/share/doc/cytoscape EXAMPLESDIR=/usr/local/share/examples/cytoscape WWWDIR=/usr/local/www/cytoscape ETCDIR=/usr/local/etc/cytoscape --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.5.1.pkg [pkg.DaveG.ca] Installing pkg-2.5.1... [pkg.DaveG.ca] Extracting pkg-2.5.1: .......... done ===> cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of cytoscape-3.6.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by cytoscape-3.6.1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by cytoscape-3.6.1 for building => SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by cytoscape-3.6.1 for building ===> Extracting for cytoscape-3.6.1 => SHA256 Checksum OK for FreeBSD-cytoscape-3.6.1-maven-repository.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-parent-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-api-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-impl-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-support-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-gui-distribution-3.6.1_GH0.tar.gz. => SHA256 Checksum OK for cytoscape-cytoscape-app-template-3.6.1_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for cytoscape-3.6.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> cytoscape-3.6.1 depends on package: maven363>0 - not found ===> Installing existing package /packages/All/maven363-3.6.3.pkg [pkg.DaveG.ca] Installing maven363-3.6.3... [pkg.DaveG.ca] `-- Installing maven-wrapper-2... [pkg.DaveG.ca] `-- Extracting maven-wrapper-2: ... done [pkg.DaveG.ca] `-- Installing openjdk8-8.482.08.1... [pkg.DaveG.ca] | `-- Installing alsa-lib-1.2.14... [pkg.DaveG.ca] | `-- Extracting alsa-lib-1.2.14: .......... done [pkg.DaveG.ca] | `-- Installing dejavu-2.37_4... [pkg.DaveG.ca] | | `-- Installing fontconfig-2.17.1,1... [pkg.DaveG.ca] | | `-- Installing expat-2.7.4... [pkg.DaveG.ca] | | `-- Extracting expat-2.7.4: .......... done [pkg.DaveG.ca] | | `-- Installing freetype2-2.14.1... [pkg.DaveG.ca] | | | `-- Installing brotli-1.2.0,1... [pkg.DaveG.ca] | | | `-- Extracting brotli-1.2.0,1: .......... done [pkg.DaveG.ca] | | | `-- Installing png-1.6.54... [pkg.DaveG.ca] | | | `-- Extracting png-1.6.54: .......... done [pkg.DaveG.ca] | | `-- Extracting freetype2-2.14.1: .......... done [pkg.DaveG.ca] | | `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | | | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | | | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | | `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] | | `-- Extracting fontconfig-2.17.1,1: .......... done [pkg.DaveG.ca] | | `-- Installing mkfontscale-1.2.3... [pkg.DaveG.ca] | | `-- Installing libfontenc-1.1.8... [pkg.DaveG.ca] | | `-- Extracting libfontenc-1.1.8: ...... done [pkg.DaveG.ca] | | `-- Extracting mkfontscale-1.2.3: .... done [pkg.DaveG.ca] | `-- Extracting dejavu-2.37_4: .......... done [pkg.DaveG.ca] | `-- Installing giflib-5.2.2... [pkg.DaveG.ca] | `-- Extracting giflib-5.2.2: .......... done [pkg.DaveG.ca] | `-- Installing java-zoneinfo-2021.e... [pkg.DaveG.ca] | `-- Extracting java-zoneinfo-2021.e: .......... done [pkg.DaveG.ca] | `-- Installing javavmwrapper-2.7.10... [pkg.DaveG.ca] | `-- Extracting javavmwrapper-2.7.10: .......... done [pkg.DaveG.ca] | `-- Installing libX11-1.8.12,1... [pkg.DaveG.ca] | | `-- Installing libxcb-1.17.0... [pkg.DaveG.ca] | | `-- Installing libXau-1.0.12... [pkg.DaveG.ca] | | `-- Extracting libXau-1.0.12: .......... done [pkg.DaveG.ca] | | `-- Installing libXdmcp-1.1.5... [pkg.DaveG.ca] | | | `-- Installing xorgproto-2024.1... [pkg.DaveG.ca] | | | `-- Extracting xorgproto-2024.1: .......... done [pkg.DaveG.ca] | | `-- Extracting libXdmcp-1.1.5: ...... done [pkg.DaveG.ca] | | `-- Extracting libxcb-1.17.0: .......... done [pkg.DaveG.ca] | `-- Extracting libX11-1.8.12,1: .......... done [pkg.DaveG.ca] | `-- Installing libXext-1.3.6,1... [pkg.DaveG.ca] | `-- Extracting libXext-1.3.6,1: .......... done [pkg.DaveG.ca] | `-- Installing libXi-1.8.2,1... [pkg.DaveG.ca] | | `-- Installing libXfixes-6.0.1... [pkg.DaveG.ca] | | `-- Extracting libXfixes-6.0.1: ....... done [pkg.DaveG.ca] | `-- Extracting libXi-1.8.2,1: .......... done [pkg.DaveG.ca] | `-- Installing libXrender-0.9.12... [pkg.DaveG.ca] | `-- Extracting libXrender-0.9.12: ....... done [pkg.DaveG.ca] | `-- Installing libXt-1.3.0,1... [pkg.DaveG.ca] | | `-- Installing libICE-1.1.2,1... [pkg.DaveG.ca] | | `-- Extracting libICE-1.1.2,1: .......... done [pkg.DaveG.ca] | | `-- Installing libSM-1.2.6,1... [pkg.DaveG.ca] | | `-- Extracting libSM-1.2.6,1: ........ done [pkg.DaveG.ca] | `-- Extracting libXt-1.3.0,1: .......... done [pkg.DaveG.ca] | `-- Installing libXtst-1.2.5... [pkg.DaveG.ca] | `-- Extracting libXtst-1.2.5: .......... done [pkg.DaveG.ca] | `-- Installing libinotify-20240724_3... [pkg.DaveG.ca] | `-- Extracting libinotify-20240724_3: .......... done [pkg.DaveG.ca] `-- Extracting openjdk8-8.482.08.1: .......... done [pkg.DaveG.ca] Extracting maven363-3.6.3: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ===== Message from freetype2-2.14.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from libinotify-20240724_3: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. ===== Message from openjdk8-8.482.08.1: -- This OpenJDK implementation may require procfs(5) mounted on /proc for some applications. If you have not done it yet, please do the following: mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: proc /proc procfs rw 0 0 ===> cytoscape-3.6.1 depends on package: maven363>0 - found ===> Returning to build of cytoscape-3.6.1 ===> cytoscape-3.6.1 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.3.9.pkg [pkg.DaveG.ca] Installing bash-5.3.9... [pkg.DaveG.ca] Extracting bash-5.3.9: .......... done ===> cytoscape-3.6.1 depends on executable: bash - found ===> Returning to build of cytoscape-3.6.1 ===> cytoscape-3.6.1 depends on file: /usr/local/openjdk8/bin/java - found ===> cytoscape-3.6.1 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> cytoscape-3.6.1 depends on file: /usr/local/bin/ccache - found ===> Returning to build of cytoscape-3.6.1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for cytoscape-3.6.1 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for cytoscape-3.6.1 [INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for org.cytoscape:app-api:bundle:3.6.1 [WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.cytoscape:jobs-api:jar -> duplicate declaration of version ${project.version} @ line 180, column 15 [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. [WARNING] [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] Basic Cytoscape POM Configuration [pom] [INFO] Cytoscape API Parent Project POM [pom] [INFO] Cytoscape Documentation Taglets [jar] [INFO] Cytoscape Event API (event-api) [bundle] [INFO] Cytoscape Model API (model-api) [bundle] [INFO] Cytoscape Service API (service-api) [bundle] [INFO] Cytoscape View Model API (viewmodel-api) [bundle] [INFO] Cytoscape CI API (ci-api) [bundle] [INFO] Cytoscape Work API (work-api) [bundle] [INFO] Cytoscape Presentation API (presentation-api) [bundle] [INFO] Cytoscape Application API (application-api) [bundle] [INFO] Cytoscape Property API (property-api) [bundle] [INFO] Cytoscape VizMap API (vizmap-api) [bundle] [INFO] Cytoscape Session API (session-api) [bundle] [INFO] Cytoscape Filter API (filter-api) [bundle] [INFO] Cytoscape IO API (io-api) [bundle] [INFO] Cytoscape Core Task API (core-task-api) [bundle] [INFO] Cytoscape Equations API (equations-api) [bundle] [INFO] Cytoscape Layout API (layout-api) [bundle] [INFO] Cytoscape Groups API (group-api) [bundle] [INFO] Cytoscape Groups API (jobs-api) [bundle] [INFO] Cytoscape Webservice API (webservice-api) [bundle] [INFO] Cytoscape Data Source API (datasource-api) [bundle] [INFO] Cytoscape Command Executor API (command-executor-api) [bundle] [INFO] Cytoscape App API (app-api) [bundle] [INFO] Cytoscape Work Swing API (work-swing-api) [bundle] [INFO] Cytoscape Swing Application API (swing-application-api) [bundle] [INFO] Cytoscape VizMap GUI API (vizmap-gui-api) [bundle] [INFO] Cytoscape Swing Utility API (swing-util-api) [bundle] [INFO] Cytoscape Webservice Swing API (webservice-swing-api) [bundle] [INFO] Cytoscape Swing App API (swing-app-api) [bundle] [INFO] Cytoscape Util API (util-api) [bundle] [INFO] Cytoscape API (api-bundle) [bundle] [INFO] Cytoscape Implementation Parent Project POM [pom] [INFO] Cytoscape Equations Impl (equations-impl) [bundle] [INFO] Cytoscape Model Impl Parent (model-impl-parent) [pom] [INFO] Cytoscape Model Impl (model-impl) [bundle] [INFO] Cytoscape Command Executor Impl (command-executor-impl) [bundle] [INFO] Cytoscape Ding Impl Parent (ding-impl) [pom] [INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) [bundle] [INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) [pom] [INFO] Cytoscape View Model Impl (viewmodel-impl) [bundle] [INFO] Cytoscape Groups Impl (group-impl) [bundle] [INFO] Cytoscape Event Impl Parent (event-impl-parent) [pom] [INFO] Cytoscape Event Impl (event-impl) [bundle] [INFO] Cytoscape Filters Impl (filter-impl) [bundle] [INFO] Cytoscape Filters 2 Impl (filter2-impl) [bundle] [INFO] Cytoscape IO Impl Parent (io-impl-parent) [pom] [INFO] Cytoscape IO Impl (io-impl) [bundle] [INFO] Cytoscape Layout Impl (layout-impl) [bundle] [INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) [jar] [INFO] Cytoscape Editor Impl (editor-impl) [bundle] [INFO] Cytoscape Equation Functions Impl (equations-functions-impl) [bundle] [INFO] Cytoscape GraphML Impl (graphml-impl) [bundle] [INFO] Cytoscape IO Impl Performance (io-impl-performance) [jar] [INFO] Cytoscape Jobs Impl (jobs-impl) [bundle] [INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) [bundle] [INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) [bundle] [INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) [bundle] [INFO] Cytoscape Linkout Impl (linkout-impl) [bundle] [INFO] Cytoscape Log Swing Impl (log-swing-impl) [bundle] [INFO] Cytoscape Manual Layout Impl (manual-layout-impl) [bundle] [INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) [jar] [INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) [jar] [INFO] Cytoscape App Impl (app-impl) [bundle] [INFO] Cytoscape Presentation Impl (presentation-impl) [bundle] [INFO] Cytoscape Property Impl (property-impl) [bundle] [INFO] Cytoscape Search Impl (search-impl) [bundle] [INFO] Cytoscape Session Impl (session-impl) [bundle] [INFO] Cytoscape Swing Utility Impl (swing-util-impl) [bundle] [INFO] Cytoscape Swing Application Impl (swing-application-impl) [bundle] [INFO] Cytoscape Table Browser Impl (table-browser-impl) [bundle] [INFO] Cytoscape Table Import Impl (table-import-impl) [bundle] [INFO] Cytoscape VizMap GUI Core Impl (vizmap-gui-core-impl) [bundle] [INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) [bundle] [INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) [pom] [INFO] Cytoscape VizMap Impl (vizmap-impl) [bundle] [INFO] Cytoscape Webservice Impl (webservice-impl) [bundle] [INFO] org.cytoscape.work-headless-impl [bundle] [INFO] org.cytoscape.work-impl [bundle] [INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) [pom] [INFO] Cytoscape Work Swing Impl (work-swing-impl) [bundle] [INFO] Cytoscape Application Impl (application-impl) [bundle] [INFO] Cytoscape Datasource Impl (datasource-impl) [bundle] [INFO] Cytoscape Support Parent Project POM [pom] [INFO] Cytoscape Launch Framework [pom] [INFO] CommandLine Provider [bundle] [INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) [bundle] [INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) [bundle] [INFO] Cytoscape Scripting Impl (scripting-impl) [bundle] [INFO] Cytoscape Core Task Impl (core-task-impl) [bundle] [INFO] Cytoscape Headless Application Impl (headless-application-impl) [bundle] [INFO] org.cytoscape.cy-commons-cli [bundle] [INFO] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) [bundle] [INFO] Cytoscape 3 App Archetypes Parent [pom] [INFO] Cytoscape 3 Archetype - Creates an App providing public API [maven-archetype] [INFO] Cytoscape 3 Archetype - Creates an App with a Task [maven-archetype] [INFO] Cytoscape 3 Archetype - Creates a CyAction (menu item) for desktop application [maven-archetype] [INFO] Cytoscape 3 Archetype - Creates a Meta-App to install multiple related apps [maven-archetype] [INFO] org.cytoscape.integration-test-support [bundle] [INFO] Launcher [jar] [INFO] StartLevel Assembly [jar] [INFO] Tasks for Testing [bundle] [INFO] Cytoscape Desktop Application Distribution [pom] [INFO] Cytoscape Third-Party Dependencies (third-party) [bundle] [INFO] SplashScreen Launcher [jar] [INFO] Cytoscape Launcher [jar] [INFO] Splash Updater [bundle] [INFO] Cytoscape Command Line Provider Implementation [bundle] [INFO] Cytoscape Diagnostics [bundle] [INFO] Cytoscape Branding [bundle] [INFO] Cytoscape Application Implementation Metadata [bundle] [INFO] Cytoscape GUI-Distribution Integration Test (integration-test) [jar] [INFO] Cytoscape Feature Repository [pom] [INFO] Cytoscape Karaf Distribution [pom] [INFO] Distribution [pom] [INFO] Cytoscape Project POM [pom] [INFO] [INFO] ------------------------< org.cytoscape:parent >------------------------ [INFO] Building Basic Cytoscape POM Configuration 3.6.1 [1/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ parent >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ parent --- [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ parent --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/parent/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/parent/3.6.1/parent-3.6.1.pom [INFO] [INFO] ----------------------< org.cytoscape:api-parent >---------------------- [INFO] Building Cytoscape API Parent Project POM 3.6.1 [2/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ api-parent >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ api-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ api-parent --- [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ api-parent >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@313f8301 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [null]. [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks]. [INFO] Cleaning package directories. [INFO] XJC writing: org/cytoscape/property/bookmark/Attribute.java [INFO] XJC writing: org/cytoscape/property/bookmark/Bookmarks.java [INFO] XJC writing: org/cytoscape/property/bookmark/Category.java [INFO] XJC writing: org/cytoscape/property/bookmark/DataSource.java [INFO] XJC writing: org/cytoscape/property/bookmark/ObjectFactory.java [INFO] Finished execution. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7364eed1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [null]. [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap]. [INFO] Cleaning package directories. [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/AttributeType.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/Dependency.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/Edge.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/Network.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/Node.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java [INFO] XJC writing: org/cytoscape/io/internal/util/vizmap/model/Vizmap.java [INFO] Finished execution. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@77cb452c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [null]. [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession]. [INFO] Cleaning package directories. [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/Child.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/Cysession.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/Cytopanel.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/Cytopanels.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/Desktop.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/DesktopSize.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/Edge.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/HiddenEdges.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/HiddenNodes.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/Network.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/NetworkFrame.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/NetworkFrames.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/NetworkTree.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/Node.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/ObjectFactory.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/Ontology.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/OntologyServer.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/Panel.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/Panels.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/Parent.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/Plugin.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/Plugins.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/SelectedEdges.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/SelectedNodes.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/Server.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/SessionState.java [INFO] XJC writing: org/cytoscape/io/internal/util/session/model/ViewableNodes.java [INFO] Finished execution. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@42ef042a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [null]. [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables]. [INFO] Cleaning package directories. [INFO] XJC writing: org/cytoscape/io/internal/util/cytables/model/CyTables.java [INFO] XJC writing: org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java [INFO] XJC writing: org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java [INFO] XJC writing: org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java [INFO] Finished execution. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1213ffbc readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [null]. [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState]. [INFO] Cleaning package directories. [INFO] XJC writing: org/cytoscape/internal/io/sessionstate/Cytopanel.java [INFO] XJC writing: org/cytoscape/internal/io/sessionstate/Cytopanels.java [INFO] XJC writing: org/cytoscape/internal/io/sessionstate/NetworkFrame.java [INFO] XJC writing: org/cytoscape/internal/io/sessionstate/NetworkFrames.java [INFO] XJC writing: org/cytoscape/internal/io/sessionstate/ObjectFactory.java [INFO] XJC writing: org/cytoscape/internal/io/sessionstate/SessionState.java [INFO] Finished execution. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@616a06e3 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [null]. [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList]. [INFO] Cleaning package directories. [INFO] XJC writing: org/cytoscape/internal/io/networklist/Network.java [INFO] XJC writing: org/cytoscape/internal/io/networklist/NetworkList.java [INFO] XJC writing: org/cytoscape/internal/io/networklist/ObjectFactory.java [INFO] Finished execution. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ api-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ api-parent --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/target/api-parent-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ api-parent --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/api-parent/3.6.1/api-parent-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/target/api-parent-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/api-parent/3.6.1/api-parent-3.6.1-sources.jar [INFO] [INFO] -----------------------< org.cytoscape:taglets >------------------------ [INFO] Building Cytoscape Documentation Taglets 3.6.1 [3/117] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ taglets --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/taglets/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ taglets --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 9 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/taglets/target/classes [WARNING] bootstrap class path not set in conjunction with -source 1.7 [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ taglets --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ taglets --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ taglets --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ taglets --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/taglets/target/taglets-3.6.1.jar [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ taglets >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ taglets <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ taglets --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/taglets/target/taglets-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ taglets >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@48e74764 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@55071497 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5f6e2ad9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1d1cfe4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@42211e04 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@34cb0e49 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ taglets <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ taglets --- [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ taglets --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/taglets/target/taglets-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/taglets/3.6.1/taglets-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/taglets/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/taglets/3.6.1/taglets-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/taglets/target/taglets-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/taglets/3.6.1/taglets-3.6.1-sources.jar [INFO] [INFO] ----------------------< org.cytoscape:event-api >----------------------- [INFO] Building Cytoscape Event API (event-api) 3.6.1 [4/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ event-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/event-api/src/main/resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ event-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 7 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/event-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ event-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ event-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ event-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ event-api --- [WARNING] Bundle org.cytoscape:event-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.event.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ event-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ event-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ event-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/event-api/target/event-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ event-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@57eed461 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@54ae1240 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7d49a1a0 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@74f89bad readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@25bc65ab readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@67396475 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ event-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ event-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ event-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ event-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/event-api/target/event-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/event-api/3.6.1/event-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/event-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/event-api/3.6.1/event-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/event-api/target/event-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/event-api/3.6.1/event-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ event-api --- [INFO] Installing org/cytoscape/event-api/3.6.1/event-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ----------------------< org.cytoscape:model-api >----------------------- [INFO] Building Cytoscape Model API (model-api) 3.6.1 [5/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ model-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/model-api/src/main/resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ model-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 72 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/model-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ model-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ model-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ model-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ model-api --- [WARNING] Bundle org.cytoscape:model-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.model.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ model-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ model-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ model-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/model-api/target/model-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ model-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@32b8992e readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5b4880b3 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1659d7d readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@32d8e58d readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@601e7c97 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6672b0ea readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ model-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ model-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ model-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ model-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/model-api/target/model-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/model-api/3.6.1/model-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/model-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/model-api/3.6.1/model-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/model-api/target/model-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/model-api/3.6.1/model-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ model-api --- [INFO] Installing org/cytoscape/model-api/3.6.1/model-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ---------------------< org.cytoscape:service-api >---------------------- [INFO] Building Cytoscape Service API (service-api) 3.6.1 [6/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ service-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ service-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 9 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ service-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ service-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ service-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ service-api --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ service-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ service-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ service-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/target/service-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ service-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1a16583d readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@593db293 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@33ccab9c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@34d644b5 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@65130cf2 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7ae97a58 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ service-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ service-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ service-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ service-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/target/service-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/service-api/3.6.1/service-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/service-api/3.6.1/service-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/target/service-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/service-api/3.6.1/service-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ service-api --- [INFO] Installing org/cytoscape/service-api/3.6.1/service-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------------< org.cytoscape:viewmodel-api >--------------------- [INFO] Building Cytoscape View Model API (viewmodel-api) 3.6.1 [7/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ viewmodel-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/viewmodel-api/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ viewmodel-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 40 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/viewmodel-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ viewmodel-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ viewmodel-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ viewmodel-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ viewmodel-api --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ viewmodel-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ viewmodel-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ viewmodel-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/viewmodel-api/target/viewmodel-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ viewmodel-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@309d9033 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@42c2a1da readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@35e64c7b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5b6789cf readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7ec63b9a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@30407f28 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ viewmodel-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ viewmodel-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ viewmodel-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ viewmodel-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/viewmodel-api/target/viewmodel-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/viewmodel-api/3.6.1/viewmodel-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/viewmodel-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/viewmodel-api/3.6.1/viewmodel-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/viewmodel-api/target/viewmodel-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/viewmodel-api/3.6.1/viewmodel-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ viewmodel-api --- [INFO] Installing org/cytoscape/viewmodel-api/3.6.1/viewmodel-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ------------------------< org.cytoscape:ci-api >------------------------ [INFO] Building Cytoscape CI API (ci-api) 3.6.1 [8/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ ci-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/ci-api/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.0:compile (default-compile) @ ci-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 7 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/ci-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ ci-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.0:testCompile (default-testCompile) @ ci-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ ci-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ ci-api --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ ci-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ ci-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ ci-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/ci-api/target/ci-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ ci-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7f8586f9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@9223122 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5b71ccf2 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@27449f65 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@505e8d48 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6e6bb211 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ ci-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ ci-api --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ ci-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/ci-api/target/ci-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/ci-api/3.6.1/ci-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/ci-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/ci-api/3.6.1/ci-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/ci-api/target/ci-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/ci-api/3.6.1/ci-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ ci-api --- [INFO] Installing org/cytoscape/ci-api/3.6.1/ci-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -----------------------< org.cytoscape:work-api >----------------------- [INFO] Building Cytoscape Work API (work-api) 3.6.1 [9/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ work-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/work-api/src/main/resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ work-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 46 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/work-api/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/work-api/src/main/java/org/cytoscape/work/util/ListMultipleSelection.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/work-api/src/main/java/org/cytoscape/work/util/ListMultipleSelection.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ work-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ work-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ work-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ work-api --- [WARNING] Bundle org.cytoscape:work-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.work.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ work-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ work-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ work-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/work-api/target/work-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ work-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2313c291 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@558fe3b0 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@435e857c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@22a7d2f2 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6253df71 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5fa49615 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ work-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ work-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ work-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ work-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/work-api/target/work-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/work-api/3.6.1/work-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/work-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/work-api/3.6.1/work-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/work-api/target/work-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/work-api/3.6.1/work-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ work-api --- [INFO] Installing org/cytoscape/work-api/3.6.1/work-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -------------------< org.cytoscape:presentation-api >------------------- [INFO] Building Cytoscape Presentation API (presentation-api) 3.6.1 [10/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ presentation-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ presentation-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 59 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/presentation-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ presentation-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ presentation-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ presentation-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ presentation-api --- [WARNING] Bundle org.cytoscape:presentation-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.view.presentation.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ presentation-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ presentation-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ presentation-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/presentation-api/target/presentation-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ presentation-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@31d31620 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@401038b1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1275d11b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5d887ffc readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6537ab7d readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3887b71 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ presentation-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ presentation-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ presentation-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ presentation-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/presentation-api/target/presentation-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/presentation-api/3.6.1/presentation-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/presentation-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/presentation-api/3.6.1/presentation-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/presentation-api/target/presentation-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/presentation-api/3.6.1/presentation-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ presentation-api --- [INFO] Installing org/cytoscape/presentation-api/3.6.1/presentation-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -------------------< org.cytoscape:application-api >-------------------- [INFO] Building Cytoscape Application API (application-api) 3.6.1 [11/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ application-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/application-api/src/main/resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ application-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 22 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/application-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ application-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ application-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ application-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ application-api --- [WARNING] Bundle org.cytoscape:application-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.application.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ application-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ application-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ application-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/application-api/target/application-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ application-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5c8079c5 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@762aa8d3 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4b7288f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@16da10e9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2133c523 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@51413fc7 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ application-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ application-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ application-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ application-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/application-api/target/application-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/application-api/3.6.1/application-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/application-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/application-api/3.6.1/application-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/application-api/target/application-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/application-api/3.6.1/application-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ application-api --- [INFO] Installing org/cytoscape/application-api/3.6.1/application-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ---------------------< org.cytoscape:property-api >--------------------- [INFO] Building Cytoscape Property API (property-api) 3.6.1 [12/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@b8b6de6 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ property-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/resources [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ property-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 13 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ property-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ property-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ property-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ property-api --- [WARNING] Bundle org.cytoscape:property-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.property.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ property-api >>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5fedaf7c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ property-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ property-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/property-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ property-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5e5b49df readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5738ec43 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4560dbd2 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@8a743a1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5d4de6f7 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@592fb393 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ property-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ property-api --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ property-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/property-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/property-api/3.6.1/property-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/property-api/3.6.1/property-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/property-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/property-api/3.6.1/property-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ property-api --- [INFO] Installing org/cytoscape/property-api/3.6.1/property-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ----------------------< org.cytoscape:vizmap-api >---------------------- [INFO] Building Cytoscape VizMap API (vizmap-api) 3.6.1 [13/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ vizmap-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/vizmap-api/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ vizmap-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 33 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/vizmap-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ vizmap-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ vizmap-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ vizmap-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ vizmap-api --- [WARNING] Bundle org.cytoscape:vizmap-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.view.vizmap.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ vizmap-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ vizmap-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ vizmap-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/vizmap-api/target/vizmap-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ vizmap-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3f891cfe readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1631da37 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@52972465 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7fef02d9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7169c184 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1820910f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ vizmap-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ vizmap-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ vizmap-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ vizmap-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/vizmap-api/target/vizmap-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/vizmap-api/3.6.1/vizmap-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/vizmap-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/vizmap-api/3.6.1/vizmap-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/vizmap-api/target/vizmap-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/vizmap-api/3.6.1/vizmap-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ vizmap-api --- [INFO] Installing org/cytoscape/vizmap-api/3.6.1/vizmap-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ---------------------< org.cytoscape:session-api >---------------------- [INFO] Building Cytoscape Session API (session-api) 3.6.1 [14/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ session-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/session-api/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ session-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 17 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/session-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ session-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ session-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ session-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ session-api --- [WARNING] Bundle org.cytoscape:session-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.session.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ session-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ session-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ session-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/session-api/target/session-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ session-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6546c39 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@14c6b451 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@21cfa25 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@176950f3 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1ae36a1a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@77fd806e readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ session-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ session-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ session-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ session-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/session-api/target/session-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/session-api/3.6.1/session-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/session-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/session-api/3.6.1/session-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/session-api/target/session-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/session-api/3.6.1/session-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ session-api --- [INFO] Installing org/cytoscape/session-api/3.6.1/session-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ----------------------< org.cytoscape:filter-api >---------------------- [INFO] Building Cytoscape Filter API (filter-api) 3.6.1 [15/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ filter-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/filter-api/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ filter-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 27 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/filter-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ filter-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ filter-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ filter-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ filter-api --- [WARNING] Bundle org.cytoscape:filter-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.filter.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ filter-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ filter-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ filter-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/filter-api/target/filter-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ filter-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@328f4387 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@44810123 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@33638e3f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7ac9f8d4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@34c1c7ea readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1816701b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ filter-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ filter-api --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ filter-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/filter-api/target/filter-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/filter-api/3.6.1/filter-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/filter-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/filter-api/3.6.1/filter-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/filter-api/target/filter-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/filter-api/3.6.1/filter-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ filter-api --- [INFO] Installing org/cytoscape/filter-api/3.6.1/filter-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ------------------------< org.cytoscape:io-api >------------------------ [INFO] Building Cytoscape IO API (io-api) 3.6.1 [16/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ io-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/src/main/resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ io-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 40 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ io-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ io-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ io-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ io-api --- [WARNING] Bundle org.cytoscape:io-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.io.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ io-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ io-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ io-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/target/io-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ io-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3a4a86a9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2d683b2d readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@b956207 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4a863032 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7fd8b289 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@330f7d20 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ io-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ io-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ io-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ io-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/target/io-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-api/3.6.1/io-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-api/3.6.1/io-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/target/io-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-api/3.6.1/io-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ io-api --- [INFO] Installing org/cytoscape/io-api/3.6.1/io-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------------< org.cytoscape:core-task-api >--------------------- [INFO] Building Cytoscape Core Task API (core-task-api) 3.6.1 [17/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ core-task-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/core-task-api/src/main/resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ core-task-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 106 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/core-task-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ core-task-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ core-task-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ core-task-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ core-task-api --- [WARNING] Bundle org.cytoscape:core-task-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.task.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ core-task-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ core-task-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ core-task-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/core-task-api/target/core-task-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ core-task-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@176c15d8 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2d98c4cd readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2bb800b5 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6c51d2c8 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@f3a3d22 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4d0cb2c5 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ core-task-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ core-task-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ core-task-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ core-task-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/core-task-api/target/core-task-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/core-task-api/3.6.1/core-task-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/core-task-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/core-task-api/3.6.1/core-task-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/core-task-api/target/core-task-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/core-task-api/3.6.1/core-task-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ core-task-api --- [INFO] Installing org/cytoscape/core-task-api/3.6.1/core-task-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------------< org.cytoscape:equations-api >--------------------- [INFO] Building Cytoscape Equations API (equations-api) 3.6.1 [18/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ equations-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/equations-api/src/main/resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ equations-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 20 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/equations-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ equations-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ equations-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ equations-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ equations-api --- [WARNING] Bundle org.cytoscape:equations-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.equations.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ equations-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ equations-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ equations-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/equations-api/target/equations-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ equations-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@46602fc2 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@768ed999 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@62dc2c6 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@49b126e9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@29c25795 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1dc4e3f1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ equations-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ equations-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ equations-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ equations-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/equations-api/target/equations-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/equations-api/3.6.1/equations-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/equations-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/equations-api/3.6.1/equations-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/equations-api/target/equations-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/equations-api/3.6.1/equations-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ equations-api --- [INFO] Installing org/cytoscape/equations-api/3.6.1/equations-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ----------------------< org.cytoscape:layout-api >---------------------- [INFO] Building Cytoscape Layout API (layout-api) 3.6.1 [19/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ layout-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/layout-api/src/main/resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ layout-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 15 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/layout-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ layout-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ layout-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ layout-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ layout-api --- [WARNING] Bundle org.cytoscape:layout-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.view.layout.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ layout-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ layout-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ layout-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/layout-api/target/layout-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ layout-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2a34a26a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@35d43d72 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6fd6c5ab readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@78aced86 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4c5c771f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@30f4e06a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ layout-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ layout-api --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ layout-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/layout-api/target/layout-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/layout-api/3.6.1/layout-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/layout-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/layout-api/3.6.1/layout-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/layout-api/target/layout-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/layout-api/3.6.1/layout-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ layout-api --- [INFO] Installing org/cytoscape/layout-api/3.6.1/layout-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ----------------------< org.cytoscape:group-api >----------------------- [INFO] Building Cytoscape Groups API (group-api) 3.6.1 [20/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ group-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/group-api/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ group-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 34 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/group-api/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/group-api/src/main/java/org/cytoscape/group/events/AbstractNodesEvent.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/group-api/src/main/java/org/cytoscape/group/events/AbstractNodesEvent.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ group-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ group-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ group-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ group-api --- [WARNING] Bundle org.cytoscape:group-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.group.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ group-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ group-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ group-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/group-api/target/group-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ group-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4caa96b8 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@55f7ee10 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@38cb6f24 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@48bb2279 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2aa3c162 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1087867 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ group-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ group-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ group-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ group-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/group-api/target/group-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/group-api/3.6.1/group-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/group-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/group-api/3.6.1/group-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/group-api/target/group-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/group-api/3.6.1/group-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ group-api --- [INFO] Installing org/cytoscape/group-api/3.6.1/group-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -----------------------< org.cytoscape:jobs-api >----------------------- [INFO] Building Cytoscape Groups API (jobs-api) 3.6.1 [21/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ jobs-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ jobs-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 10 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ jobs-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ jobs-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ jobs-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ jobs-api --- [WARNING] Bundle org.cytoscape:jobs-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.jobs.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ jobs-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ jobs-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ jobs-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/target/jobs-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ jobs-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7b2cc1d4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7964fb99 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3204b591 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7c411d10 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5764981c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1b993886 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ jobs-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ jobs-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ jobs-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ jobs-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/target/jobs-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/jobs-api/3.6.1/jobs-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/jobs-api/3.6.1/jobs-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/target/jobs-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/jobs-api/3.6.1/jobs-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ jobs-api --- [INFO] Installing org/cytoscape/jobs-api/3.6.1/jobs-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------------< org.cytoscape:webservice-api >-------------------- [INFO] Building Cytoscape Webservice API (webservice-api) 3.6.1 [22/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ webservice-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/webservice-api/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ webservice-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 12 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/webservice-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ webservice-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ webservice-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ webservice-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ webservice-api --- [WARNING] Bundle org.cytoscape:webservice-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.io.webservice.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ webservice-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ webservice-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ webservice-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/webservice-api/target/webservice-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ webservice-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6da71f59 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@78d3a03f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@21814915 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@58f3416a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@76601281 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@27955a53 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ webservice-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ webservice-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ webservice-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ webservice-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/webservice-api/target/webservice-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/webservice-api/3.6.1/webservice-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/webservice-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/webservice-api/3.6.1/webservice-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/webservice-api/target/webservice-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/webservice-api/3.6.1/webservice-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ webservice-api --- [INFO] Installing org/cytoscape/webservice-api/3.6.1/webservice-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------------< org.cytoscape:datasource-api >-------------------- [INFO] Building Cytoscape Data Source API (datasource-api) 3.6.1 [23/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ datasource-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/datasource-api/src/main/resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ datasource-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/datasource-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ datasource-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ datasource-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ datasource-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ datasource-api --- [WARNING] Bundle org.cytoscape:datasource-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.io.datasource.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ datasource-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ datasource-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ datasource-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/datasource-api/target/datasource-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ datasource-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@431584ab readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@49c0ac7a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@29579547 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@cae7549 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@72e6444c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1e3fead8 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ datasource-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ datasource-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ datasource-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ datasource-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/datasource-api/target/datasource-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/datasource-api/3.6.1/datasource-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/datasource-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/datasource-api/3.6.1/datasource-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/datasource-api/target/datasource-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/datasource-api/3.6.1/datasource-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ datasource-api --- [INFO] Installing org/cytoscape/datasource-api/3.6.1/datasource-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -----------------< org.cytoscape:command-executor-api >----------------- [INFO] Building Cytoscape Command Executor API (command-executor-api) 3.6.1 [24/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ command-executor-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/command-executor-api/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ command-executor-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 11 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/command-executor-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ command-executor-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ command-executor-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ command-executor-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ command-executor-api --- [WARNING] Bundle org.cytoscape:command-executor-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.command.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ command-executor-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ command-executor-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ command-executor-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/command-executor-api/target/command-executor-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ command-executor-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@21c849f5 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6a2d9ede readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1aef7b9e readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@ffc4468 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@27f6411c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@14778c9f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ command-executor-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ command-executor-api --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ command-executor-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/command-executor-api/target/command-executor-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/command-executor-api/3.6.1/command-executor-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/command-executor-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/command-executor-api/3.6.1/command-executor-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/command-executor-api/target/command-executor-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/command-executor-api/3.6.1/command-executor-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ command-executor-api --- [INFO] Installing org/cytoscape/command-executor-api/3.6.1/command-executor-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -----------------------< org.cytoscape:app-api >------------------------ [INFO] Building Cytoscape App API (app-api) 3.6.1 [25/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ app-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/app-api/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ app-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 5 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/app-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ app-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ app-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ app-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ app-api --- [INFO] [INFO] --- maven-assembly-plugin:2.5.5:single (make-assembly) @ app-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/app-api/target/app-api-3.6.1-jar-with-dependencies.jar [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ app-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-javadoc-plugin:2.10.3:aggregate-jar (javadoc-jar) @ app-api --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ app-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ app-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ app-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/app-api/target/app-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ app-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1b08e04d readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5a1d9310 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@51a0a889 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6584d59a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@c334f4f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@25184fb9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ app-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ app-api --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ app-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/app-api/target/app-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/app-api/3.6.1/app-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/app-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/app-api/3.6.1/app-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/app-api/target/app-api-3.6.1-jar-with-dependencies.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/app-api/3.6.1/app-api-3.6.1-jar-with-dependencies.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/app-api/target/app-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/app-api/3.6.1/app-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ app-api --- [INFO] Installing org/cytoscape/app-api/3.6.1/app-api-3.6.1.jar [INFO] Installing org/cytoscape/app-api/3.6.1/app-api-3.6.1-jar-with-dependencies.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------------< org.cytoscape:work-swing-api >-------------------- [INFO] Building Cytoscape Work Swing API (work-swing-api) 3.6.1 [26/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ work-swing-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/work-swing-api/src/main/resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ work-swing-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 16 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/work-swing-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ work-swing-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ work-swing-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ work-swing-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ work-swing-api --- [WARNING] Bundle org.cytoscape:work-swing-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.work.swing.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ work-swing-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ work-swing-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ work-swing-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/work-swing-api/target/work-swing-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ work-swing-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6d81acb readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1573a7e0 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4ef77ff8 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@24af15cd readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@669089f8 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@72380997 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ work-swing-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ work-swing-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ work-swing-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ work-swing-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/work-swing-api/target/work-swing-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/work-swing-api/3.6.1/work-swing-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/work-swing-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/work-swing-api/3.6.1/work-swing-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/work-swing-api/target/work-swing-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/work-swing-api/3.6.1/work-swing-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ work-swing-api --- [INFO] Installing org/cytoscape/work-swing-api/3.6.1/work-swing-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ----------------< org.cytoscape:swing-application-api >----------------- [INFO] Building Cytoscape Swing Application API (swing-application-api) 3.6.1 [27/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ swing-application-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-application-api/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ swing-application-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 32 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-application-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ swing-application-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ swing-application-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ swing-application-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ swing-application-api --- [WARNING] Bundle org.cytoscape:swing-application-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.application.swing.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ swing-application-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ swing-application-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ swing-application-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-application-api/target/swing-application-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ swing-application-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@bfc2de readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@62abef3c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@54b7009a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@794c0b91 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6e3b76ea readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@178376d4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ swing-application-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ swing-application-api --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ swing-application-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-application-api/target/swing-application-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/swing-application-api/3.6.1/swing-application-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-application-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/swing-application-api/3.6.1/swing-application-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-application-api/target/swing-application-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/swing-application-api/3.6.1/swing-application-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ swing-application-api --- [INFO] Installing org/cytoscape/swing-application-api/3.6.1/swing-application-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------------< org.cytoscape:vizmap-gui-api >-------------------- [INFO] Building Cytoscape VizMap GUI API (vizmap-gui-api) 3.6.1 [28/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ vizmap-gui-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/vizmap-gui-api/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ vizmap-gui-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 24 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/vizmap-gui-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ vizmap-gui-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ vizmap-gui-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ vizmap-gui-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ vizmap-gui-api --- [WARNING] Bundle org.cytoscape:vizmap-gui-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.view.vizmap.gui.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ vizmap-gui-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ vizmap-gui-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ vizmap-gui-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/vizmap-gui-api/target/vizmap-gui-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ vizmap-gui-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2a43cd9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@317350cc readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@22384ff9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@33f6e026 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@481925c7 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7f912032 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ vizmap-gui-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ vizmap-gui-api --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ vizmap-gui-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/vizmap-gui-api/target/vizmap-gui-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/vizmap-gui-api/3.6.1/vizmap-gui-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/vizmap-gui-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/vizmap-gui-api/3.6.1/vizmap-gui-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/vizmap-gui-api/target/vizmap-gui-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/vizmap-gui-api/3.6.1/vizmap-gui-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ vizmap-gui-api --- [INFO] Installing org/cytoscape/vizmap-gui-api/3.6.1/vizmap-gui-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------------< org.cytoscape:swing-util-api >-------------------- [INFO] Building Cytoscape Swing Utility API (swing-util-api) 3.6.1 [29/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ swing-util-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ swing-util-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 22 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-util-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ swing-util-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ swing-util-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ swing-util-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ swing-util-api --- [WARNING] Bundle org.cytoscape:swing-util-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.util.swing.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ swing-util-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ swing-util-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ swing-util-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-util-api/target/swing-util-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ swing-util-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@39c86026 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@724193ec readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@384a421b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1d8ae41a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@c2a1c12 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@11b477a4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ swing-util-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ swing-util-api --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ swing-util-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-util-api/target/swing-util-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/swing-util-api/3.6.1/swing-util-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-util-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/swing-util-api/3.6.1/swing-util-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-util-api/target/swing-util-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/swing-util-api/3.6.1/swing-util-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ swing-util-api --- [INFO] Installing org/cytoscape/swing-util-api/3.6.1/swing-util-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -----------------< org.cytoscape:webservice-swing-api >----------------- [INFO] Building Cytoscape Webservice Swing API (webservice-swing-api) 3.6.1 [30/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ webservice-swing-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/webservice-swing-api/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ webservice-swing-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/webservice-swing-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ webservice-swing-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ webservice-swing-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ webservice-swing-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ webservice-swing-api --- [WARNING] Bundle org.cytoscape:webservice-swing-api:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.io.webservice.swing.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ webservice-swing-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ webservice-swing-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ webservice-swing-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/webservice-swing-api/target/webservice-swing-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ webservice-swing-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1e2bc7ab readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@74374cb6 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5cba9039 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@775ed062 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@323b0f40 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5faab93 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ webservice-swing-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ webservice-swing-api --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ webservice-swing-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ webservice-swing-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/webservice-swing-api/target/webservice-swing-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/webservice-swing-api/3.6.1/webservice-swing-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/webservice-swing-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/webservice-swing-api/3.6.1/webservice-swing-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/webservice-swing-api/target/webservice-swing-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/webservice-swing-api/3.6.1/webservice-swing-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ webservice-swing-api --- [INFO] Installing org/cytoscape/webservice-swing-api/3.6.1/webservice-swing-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------------< org.cytoscape:swing-app-api >--------------------- [INFO] Building Cytoscape Swing App API (swing-app-api) 3.6.1 [31/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ swing-app-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ swing-app-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ swing-app-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ swing-app-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ swing-app-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ swing-app-api --- [INFO] [INFO] --- maven-assembly-plugin:2.5.5:single (make-assembly) @ swing-app-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/swing-app-api-3.6.1-jar-with-dependencies.jar [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ swing-app-api --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-javadoc-plugin:2.10.3:jar (javadoc-jar) @ swing-app-api --- [INFO] Loading source files for package org.cytoscape.app.swing... Loading source files for package org.cytoscape.app... Loading source files for package org.cytoscape.app.event... Loading source files for package org.cytoscape.session... Loading source files for package org.cytoscape.session.events... Loading source files for package org.cytoscape.model.subnetwork... Loading source files for package org.cytoscape.model... Loading source files for package org.cytoscape.model.events... Loading source files for package org.cytoscape.task... Loading source files for package org.cytoscape.task.write... Loading source files for package org.cytoscape.task.read... Loading source files for package org.cytoscape.task.destroy... Loading source files for package org.cytoscape.task.create... Loading source files for package org.cytoscape.task.hide... Loading source files for package org.cytoscape.task.select... Loading source files for package org.cytoscape.task.visualize... Loading source files for package org.cytoscape.task.analyze... Loading source files for package org.cytoscape.task.edit... Loading source files for package org.cytoscape.view.model... Loading source files for package org.cytoscape.view.model.events... Loading source files for package org.cytoscape.io... Loading source files for package org.cytoscape.io.util... Loading source files for package org.cytoscape.io.write... Loading source files for package org.cytoscape.io.read... Loading source files for package org.cytoscape.group.events... Loading source files for package org.cytoscape.group... Loading source files for package org.cytoscape.group.data... Loading source files for package org.cytoscape.event... Loading source files for package org.cytoscape.service.util... Loading source files for package org.cytoscape.view.layout... Loading source files for package org.cytoscape.property... Loading source files for package org.cytoscape.property.bookmark... Loading source files for package org.cytoscape.jobs... Loading source files for package org.cytoscape.equations... Loading source files for package org.cytoscape.equations.event... Loading source files for package org.cytoscape.io.webservice... Loading source files for package org.cytoscape.io.webservice.client... Loading source files for package org.cytoscape.io.webservice.events... Loading source files for package org.cytoscape.io.datasource... Loading source files for package org.cytoscape.application.events... Loading source files for package org.cytoscape.application... Loading source files for package org.cytoscape.filter.view... Loading source files for package org.cytoscape.filter.transformers... Loading source files for package org.cytoscape.filter... Loading source files for package org.cytoscape.filter.model... Loading source files for package org.cytoscape.filter.predicates... Loading source files for package org.cytoscape.command.util... Loading source files for package org.cytoscape.command... Loading source files for package org.cytoscape.application.swing... Loading source files for package org.cytoscape.application.swing.events... Loading source files for package org.cytoscape.application.swing.search... Loading source files for package org.cytoscape.work... Loading source files for package org.cytoscape.work.util... Loading source files for package org.cytoscape.work.json... Loading source files for package org.cytoscape.work.properties... Loading source files for package org.cytoscape.work.undo... Loading source files for package org.cytoscape.work.swing.util... Loading source files for package org.cytoscape.work.swing... Loading source files for package org.cytoscape.work.swing.undo... Loading source files for package org.cytoscape.view.vizmap.gui.util... Loading source files for package org.cytoscape.view.vizmap.gui... Loading source files for package org.cytoscape.view.vizmap.gui.editor... Loading source files for package org.cytoscape.view.vizmap.gui.event... Loading source files for package org.cytoscape.view.vizmap... Loading source files for package org.cytoscape.view.vizmap.events... Loading source files for package org.cytoscape.view.vizmap.mappings... Loading source files for package org.cytoscape.view.presentation.events... Loading source files for package org.cytoscape.view.presentation.property... Loading source files for package org.cytoscape.view.presentation.property.values... Loading source files for package org.cytoscape.view.presentation... Loading source files for package org.cytoscape.view.presentation.annotations... Loading source files for package org.cytoscape.view.presentation.customgraphics... Loading source files for package org.cytoscape.util.swing... Loading source files for package org.cytoscape.io.webservice.swing... Constructing Javadoc information... Registered Taglet org.cytoscape.taglets.compatibility.FinalClassTaglet ... Registered Taglet org.cytoscape.taglets.compatibility.EnumClassTaglet ... Registered Taglet org.cytoscape.taglets.compatibility.StaticClassTaglet ... Registered Taglet org.cytoscape.taglets.compatibility.ApiInterfaceTaglet ... Registered Taglet org.cytoscape.taglets.compatibility.InModuleTaglet ... Registered Taglet org.cytoscape.taglets.compatibility.SpiInterfaceTaglet ... Registered Taglet org.cytoscape.taglets.compatibility.AbstractClassTaglet ... Standard Doclet version 1.8.0_482 Building tree for all the packages and classes... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/app/swing/AbstractCySwingApp.html... [@CyAPI.InModule:swing-app-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/app/swing/CySwingAppAdapter.html... [@CyAPI.InModule:swing-app-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/app/AbstractCyApp.html... [@CyAPI.InModule:app-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/app/CyAppAdapter.html... [@CyAPI.InModule:app-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/app/event/AppsFinishedStartingEvent.html... [@CyAPI.InModule:app-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/app/event/AppsFinishedStartingListener.html... [@CyAPI.InModule:app-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/session/CyNetworkNaming.html... [@CyAPI.InModule:session-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/session/CySession.html... [@CyAPI.InModule:session-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/session/CySession.Builder.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/session/CySessionManager.html... [@CyAPI.InModule:session-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/session/events/SessionAboutToBeLoadedEvent.html... [@CyAPI.InModule:session-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/session/events/SessionAboutToBeLoadedListener.html... [@CyAPI.InModule:session-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/session/events/SessionAboutToBeSavedEvent.html... [@CyAPI.InModule:session-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/session/events/SessionAboutToBeSavedListener.html... [@CyAPI.InModule:session-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/session/events/SessionLoadCancelledEvent.html... [@CyAPI.InModule:session-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/session/events/SessionLoadCancelledListener.html... [@CyAPI.InModule:session-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/session/events/SessionLoadedEvent.html... [@CyAPI.InModule:session-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/session/events/SessionLoadedListener.html... [@CyAPI.InModule:session-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/session/events/SessionSaveCancelledEvent.html... [@CyAPI.InModule:session-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/session/events/SessionSaveCancelledListener.html... [@CyAPI.InModule:session-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/session/events/SessionSavedEvent.html... [@CyAPI.InModule:session-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/session/events/SessionSavedListener.html... [@CyAPI.InModule:session-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/subnetwork/CyRootNetwork.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/subnetwork/CyRootNetworkManager.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/subnetwork/CySubNetwork.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyColumn.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyDisposable.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyEdge.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyEdge.Type.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyIdentifiable.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyNetwork.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyNetworkFactory.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyNetworkManager.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyNetworkTableManager.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyNode.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyRow.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyTable.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyTable.Mutability.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyTableFactory.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyTableFactory.InitialTableSize.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyTableManager.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyTableMetadata.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/CyTableUtil.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/SavePolicy.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/SUIDFactory.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/VirtualColumnInfo.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/AboutToRemoveEdgesEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/AboutToRemoveEdgesListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/AboutToRemoveNodesEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/AboutToRemoveNodesListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/AddedEdgesEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/AddedEdgesListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/AddedNodesEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/AddedNodesListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/ColumnCreatedEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/ColumnCreatedListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/ColumnDeletedEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/ColumnDeletedListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/ColumnNameChangedEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/ColumnNameChangedListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/NetworkAboutToBeDestroyedEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/NetworkAboutToBeDestroyedListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/NetworkAddedEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/NetworkAddedListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/NetworkDestroyedEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/NetworkDestroyedListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/RemovedEdgesEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/RemovedEdgesListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/RemovedNodesEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/RemovedNodesListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/RowsCreatedEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/RowsCreatedListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/RowsDeletedEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/RowsDeletedListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/RowSetRecord.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/RowsSetEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/RowsSetListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/SetNetworkPointerEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/SetNetworkPointerListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/TableAboutToBeDeletedEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/TableAboutToBeDeletedListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/TableAddedEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/TableAddedListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/TableDeletedEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/TableDeletedListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/TablePrivacyChangedEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/TablePrivacyChangedListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/TableTitleChangedEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/TableTitleChangedListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/UnsetNetworkPointerEvent.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/model/events/UnsetNetworkPointerListener.html... [@CyAPI.InModule:model-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractEdgeViewTask.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractEdgeViewTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractNetworkCollectionTask.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractNetworkCollectionTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractNetworkTask.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractNetworkTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractNetworkViewCollectionTask.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractNetworkViewCollectionTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractNetworkViewLocationTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractNetworkViewTask.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractNetworkViewTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractNodeViewTask.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractNodeViewTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractRowTask.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractTableCellTask.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractTableCellTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractTableColumnTask.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractTableColumnTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractTableTask.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/AbstractTableTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/DynamicTaskFactoryProvisioner.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/EdgeViewTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/NetworkCollectionTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/NetworkTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/NetworkViewCollectionTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/NetworkViewLocationTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/NetworkViewTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/NodeViewTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/RowTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/TableCellTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/TableColumnTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/TableTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/write/ExportNetworkImageTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/write/ExportNetworkTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/write/ExportNetworkViewTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/write/ExportSelectedNetworkTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/write/ExportSelectedTableTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/write/ExportTableTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/write/ExportVizmapTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/write/SaveSessionAsTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/write/SaveSessionTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/read/LoadMultipleNetworkFilesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/read/LoadNetworkFileTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/read/LoadNetworkURLTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/read/LoadTableFileTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/read/LoadTableURLTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/read/LoadVizmapFileTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/read/OpenSessionTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/destroy/DeleteColumnTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/destroy/DeleteSelectedNodesAndEdgesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/destroy/DeleteTableTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/destroy/DestroyNetworkTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/destroy/DestroyNetworkViewTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/create/CloneNetworkTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/create/CreateNetworkViewTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/create/NewEmptyNetworkViewFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/create/NewNetworkSelectedNodesAndEdgesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/create/NewNetworkSelectedNodesOnlyTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/create/NewSessionTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/HideSelectedEdgesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/HideSelectedNodesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/HideSelectedTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/HideUnselectedEdgesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/HideUnselectedNodesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/HideUnselectedTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/UnHideAllEdgesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/UnHideAllNodesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/UnHideAllTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/DeselectAllEdgesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/DeselectAllNodesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/DeselectAllTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/InvertSelectedEdgesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/InvertSelectedNodesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/SelectAdjacentEdgesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/SelectAllEdgesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/SelectAllNodesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/SelectAllTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/SelectConnectedNodesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/SelectFirstNeighborsNodeViewTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/SelectFirstNeighborsTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/SelectFromFileListTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/visualize/ApplyPreferredLayoutTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/visualize/ApplyVisualStyleTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/analyze/AnalyzeNetworkCollectionTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/edit/CollapseGroupTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/edit/ConnectSelectedNodesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/edit/EditNetworkTitleTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/edit/ExpandGroupTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/edit/GroupNodesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/edit/ImportDataTableTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/edit/JoinTablesTaskTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/edit/MapGlobalToLocalTableTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/edit/MapTableToNetworkTablesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/edit/MergeTablesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/edit/RenameColumnTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/edit/UnGroupNodesTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/edit/UnGroupTaskFactory.html... [@CyAPI.InModule:core-task-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/AbstractVisualProperty.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/ContinuousRange.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/CyNetworkView.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/CyNetworkViewFactory.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/CyNetworkViewManager.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/DiscreteRange.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/NullCyNetworkView.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/NullDataType.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/Range.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/View.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/Visualizable.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/VisualLexicon.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/VisualLexiconNode.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/VisualProperty.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/AboutToRemoveEdgeViewsEvent.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/AboutToRemoveEdgeViewsListener.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/AboutToRemoveNodeViewsEvent.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/AboutToRemoveNodeViewsListener.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/AddedEdgeViewsEvent.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/AddedEdgeViewsListener.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/AddedNodeViewsEvent.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/AddedNodeViewsListener.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/FitContentEvent.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/FitContentListener.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/FitSelectedEvent.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/FitSelectedListener.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/NetworkViewAboutToBeDestroyedEvent.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/NetworkViewAboutToBeDestroyedListener.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/NetworkViewAddedEvent.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/NetworkViewAddedListener.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/NetworkViewDestroyedEvent.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/NetworkViewDestroyedListener.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/UpdateNetworkPresentationEvent.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/UpdateNetworkPresentationListener.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/ViewChangedEvent.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/ViewChangedListener.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/ViewChangeRecord.html... [@CyAPI.InModule:viewmodel-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/BasicCyFileFilter.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/CyFileFilter.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/CyFileFilterProvider.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/DataCategory.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/util/RecentlyOpenedTracker.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/util/StreamUtil.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/CyNetworkViewWriterFactory.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/CyNetworkViewWriterManager.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/CyPropertyWriterFactory.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/CyPropertyWriterManager.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/CySessionWriterFactory.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/CySessionWriterManager.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/CyTableWriterFactory.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/CyTableWriterManager.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/CyTransformerWriter.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/CyWriter.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/CyWriterFactory.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/CyWriterManager.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/PresentationWriterFactory.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/PresentationWriterManager.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/VizmapWriterFactory.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/VizmapWriterManager.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/read/AbstractCyNetworkReader.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/read/AbstractInputStreamTaskFactory.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/read/CyNetworkReader.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/read/CyNetworkReaderManager.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/read/CyPropertyReader.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/read/CyPropertyReaderManager.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/read/CySessionReader.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/read/CySessionReaderManager.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/read/CyTableReader.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/read/CyTableReaderManager.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/read/CyTransformerReader.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/read/InputStreamTaskFactory.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/read/VizmapReader.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/read/VizmapReaderManager.html... [@CyAPI.InModule:io-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupAboutToBeDestroyedEvent.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupAboutToBeDestroyedListener.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupAboutToBeRemovedEvent.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupAboutToBeRemovedListener.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupAboutToCollapseEvent.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupAboutToCollapseListener.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupAddedEvent.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupAddedListener.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupAddedToNetworkEvent.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupAddedToNetworkListener.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupCollapsedEvent.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupCollapsedListener.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupEdgesAddedEvent.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupEdgesAddedListener.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupEdgesRemovedEvent.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupEdgesRemovedListener.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupNodesAddedEvent.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupNodesAddedListener.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupNodesRemovedEvent.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/events/GroupNodesRemovedListener.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/CyGroup.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/CyGroupFactory.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/CyGroupManager.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/CyGroupSettingsManager.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/CyGroupSettingsManager.DoubleClickAction.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/CyGroupSettingsManager.GroupViewType.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/data/Aggregator.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/data/AttributeHandlingType.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/group/data/CyGroupAggregationManager.html... [@CyAPI.InModule:group-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/event/AbstractCyEvent.html... [@CyAPI.InModule:event-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/event/AbstractCyPayloadEvent.html... [@CyAPI.InModule:event-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/event/CyEvent.html... [@CyAPI.InModule:event-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/event/CyEventHelper.html... [@CyAPI.InModule:event-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/event/CyListener.html... [@CyAPI.InModule:event-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/event/CyPayloadEvent.html... [@CyAPI.InModule:event-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/service/util/AbstractCyActivator.html... [@CyAPI.InModule:service-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/service/util/CyServiceRegistrar.html... [@CyAPI.InModule:service-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/layout/AbstractLayoutAlgorithm.html... [@CyAPI.InModule:layout-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/layout/AbstractLayoutTask.html... [@CyAPI.InModule:layout-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/layout/AbstractParallelPartitionLayoutTask.html... [@CyAPI.InModule:layout-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/layout/AbstractPartitionLayoutTask.html... [@CyAPI.InModule:layout-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/layout/CyLayoutAlgorithm.html... [@CyAPI.InModule:layout-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/layout/CyLayoutAlgorithmManager.html... [@CyAPI.InModule:layout-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/layout/EdgeWeighter.html... [@CyAPI.InModule:layout-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/layout/LayoutEdge.html... [@CyAPI.InModule:layout-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/layout/LayoutEdit.html... [@CyAPI.InModule:layout-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/layout/LayoutNode.html... [@CyAPI.InModule:layout-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/layout/LayoutPartition.html... [@CyAPI.InModule:layout-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/layout/LayoutPoint.html... [@CyAPI.InModule:layout-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/layout/PartitionUtil.html... [@CyAPI.InModule:layout-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/layout/WeightTypes.html... [@CyAPI.InModule:layout-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/property/AbstractConfigDirPropsReader.html... [@CyAPI.InModule:property-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/property/CyProperty.html... [@CyAPI.InModule:property-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/property/CyProperty.SavePolicy.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/property/PropertyUpdatedEvent.html... [@CyAPI.InModule:property-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/property/PropertyUpdatedListener.html... [@CyAPI.InModule:property-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/property/SimpleCyProperty.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/property/bookmark/Attribute.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/property/bookmark/Bookmarks.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/property/bookmark/BookmarksUtil.html... [@CyAPI.InModule:property-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/property/bookmark/Category.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/property/bookmark/DataSource.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/property/bookmark/ObjectFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/jobs/AbstractCyJob.html... [@CyAPI.InModule:jobs-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/jobs/CyJob.html... [@CyAPI.InModule:jobs-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/jobs/CyJobData.html... [@CyAPI.InModule:jobs-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/jobs/CyJobDataService.html... [@CyAPI.InModule:jobs-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/jobs/CyJobExecutionService.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/jobs/CyJobManager.html... [@CyAPI.InModule:jobs-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/jobs/CyJobMonitor.html... [@CyAPI.InModule:jobs-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/jobs/CyJobStatus.html... [@CyAPI.InModule:jobs-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/jobs/CyJobStatus.Status.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/jobs/SUIDUtil.html... [@CyAPI.InModule:jobs-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/AbstractFunction.html... [@CyAPI.InModule:equations-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/AbstractNode.html... [@CyAPI.InModule:equations-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/ArgDescriptor.html... [@CyAPI.InModule:equations-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/ArgType.html... [@CyAPI.InModule:equations-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/CodeAndSourceLocation.html... [@CyAPI.InModule:equations-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/Equation.html... [@CyAPI.InModule:equations-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/EquationCompiler.html... [@CyAPI.InModule:equations-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/EquationParser.html... [@CyAPI.InModule:equations-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/EquationUtil.html... [@CyAPI.InModule:equations-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/Function.html... [@CyAPI.InModule:equations-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/FunctionError.html... [@CyAPI.InModule:equations-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/FunctionUtil.html... [@CyAPI.InModule:equations-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/IdentDescriptor.html... [@CyAPI.InModule:equations-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/Interpreter.html... [@CyAPI.InModule:equations-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/TreeNode.html... [@CyAPI.InModule:equations-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/event/EquationFunctionAddedEvent.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/event/EquationFunctionAddedListener.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/event/EquationFunctionRemovedEvent.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/equations/event/EquationFunctionRemovedListener.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/webservice/NetworkImportWebServiceClient.html... [@CyAPI.InModule:webservice-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/webservice/SearchWebServiceClient.html... [@CyAPI.InModule:webservice-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/webservice/TableImportWebServiceClient.html... [@CyAPI.InModule:webservice-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/webservice/WebServiceClient.html... [@CyAPI.InModule:webservice-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/webservice/client/AbstractWebServiceClient.html... [@CyAPI.InModule:webservice-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/webservice/events/DataImportFinishedEvent.html... [@CyAPI.InModule:webservice-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/webservice/events/DataImportFinishedListener.html... [@CyAPI.InModule:webservice-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/webservice/events/SearchFinishedEvent.html... [@CyAPI.InModule:webservice-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/webservice/events/SearchFinishedListener.html... [@CyAPI.InModule:webservice-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/datasource/DataSource.html... [@CyAPI.InModule:datasource-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/datasource/DataSourceManager.html... [@CyAPI.InModule:datasource-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/datasource/DefaultDataSource.html... [@CyAPI.InModule:datasource-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/events/CyShutdownEvent.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/events/CyShutdownListener.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/events/CyStartEvent.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/events/CyStartListener.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/events/SetCurrentNetworkEvent.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/events/SetCurrentNetworkListener.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/events/SetCurrentNetworkViewEvent.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/events/SetCurrentNetworkViewListener.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/events/SetCurrentRenderingEngineEvent.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/events/SetCurrentRenderingEngineListener.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/events/SetSelectedNetworksEvent.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/events/SetSelectedNetworksListener.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/events/SetSelectedNetworkViewsEvent.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/events/SetSelectedNetworkViewsListener.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/CyApplicationConfiguration.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/CyApplicationManager.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/CyShutdown.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/CyUserLog.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/CyVersion.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/NetworkViewRenderer.html... [@CyAPI.InModule:application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/view/InteractivityChangedListener.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/view/TransformerViewFactory.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/transformers/Transformers.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/TransformerManager.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/AbstractTransformer.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/CompositeFilter.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/CompositeFilter.Type.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/ElementTransformer.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/ElementTransformerFactory.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/Filter.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/FilterFactory.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/HolisticTransformer.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/HolisticTransformerFactory.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/NamedTransformer.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/SubFilterTransformer.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/Transformer.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/TransformerFactory.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/TransformerListener.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/TransformerSink.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/TransformerSource.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/ValidatableTransformer.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/model/ValidationWarning.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/filter/predicates/Predicate.html... [@CyAPI.InModule:filter-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/command/util/EdgeList.html... [@CyAPI.InModule:command-executor-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/command/util/NodeList.html... [@CyAPI.InModule:command-executor-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/command/util/RowList.html... [@CyAPI.InModule:command-executor-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/command/AbstractStringTunableHandler.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/command/AvailableCommands.html... [@CyAPI.InModule:command-executor-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/command/CommandExecutorTaskFactory.html... [@CyAPI.InModule:command-executor-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/command/StringToModel.html... [@CyAPI.InModule:command-executor-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/command/StringTunableHandler.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/command/StringTunableHandlerFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/AbstractCyAction.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/AbstractToolBarComponent.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/AbstractViewUpdater.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/ActionEnableSupport.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/CyAction.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/CyEdgeViewContextMenuFactory.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/CyHelpBroker.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/CyMenuItem.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/CyNetworkViewContextMenuFactory.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/CyNetworkViewDesktopMgr.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/CyNetworkViewDesktopMgr.ArrangeType.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/CyNodeViewContextMenuFactory.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/CySwingApplication.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/CytoPanel.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/CytoPanelComponent.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/CytoPanelComponent2.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/CytoPanelName.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/CytoPanelState.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/ToolBarComponent.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/events/CytoPanelComponentSelectedEvent.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/events/CytoPanelComponentSelectedListener.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/events/CytoPanelStateChangedEvent.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/events/CytoPanelStateChangedListener.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/events/PreferencesUpdatedEvent.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/events/PreferencesUpdatedListener.html... [@CyAPI.InModule:swing-application-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/search/AbstractNetworkSearchTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/search/NetworkSearchTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/AbstractTask.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/AbstractTaskFactory.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/AbstractTaskManager.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/AbstractTunableHandler.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/AbstractTunableInterceptor.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/BasicTunableHandlerFactory.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/ContainsTunables.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/FinishStatus.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/FinishStatus.Type.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/ObservableTask.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/ProvidesTitle.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/ServiceProperties.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/SynchronousTaskManager.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/Task.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/TaskFactory.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/TaskIterator.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/TaskManager.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/TaskMonitor.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/TaskMonitor.Level.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/TaskObserver.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/Tunable.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/TunableGravityOrderer.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/TunableHandler.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/TunableHandlerFactory.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/TunableMutator.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/TunableRecorder.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/TunableSetter.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/TunableValidator.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/TunableValidator.ValidationState.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/util/AbstractBounded.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/util/BoundedChangeListener.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/util/BoundedDouble.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/util/BoundedFloat.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/util/BoundedInteger.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/util/BoundedLong.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/util/ListChangeListener.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/util/ListMultipleSelection.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/util/ListSelection.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/util/ListSingleSelection.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/json/JSONResult.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/properties/TunablePropertyHandler.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/properties/TunablePropertyHandlerFactory.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/properties/TunablePropertySerializer.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/properties/TunablePropertySerializerFactory.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/undo/AbstractCyEdit.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/undo/UndoSupport.html... [@CyAPI.InModule:work-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/util/UserAction.html... [@CyAPI.InModule:work-swing-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/AbstractGUITunableHandler.html... [@CyAPI.InModule:work-swing-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/AbstractGUITunableHandler.TunableFieldPanel.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/DialogTaskManager.html... [@CyAPI.InModule:work-swing-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/DirectlyPresentableTunableHandler.html... [@CyAPI.InModule:work-swing-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/DynamicSubmenuListener.html... [@CyAPI.InModule:work-swing-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/GUITunableHandler.html... [@CyAPI.InModule:work-swing-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/GUITunableHandlerFactory.html... [@CyAPI.InModule:work-swing-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/PanelTaskManager.html... [@CyAPI.InModule:work-swing-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/RequestsUIHelper.html... [@CyAPI.InModule:work-swing-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/SimpleGUITunableHandlerFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/StatusBarPanelFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/TaskStatusPanelFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/TunableUIHelper.html... [@CyAPI.InModule:work-swing-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/undo/SwingUndoSupport.html... [@CyAPI.InModule:work-swing-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/util/DiscreteMappingGenerator.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/util/PropertySheetUtil.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/DefaultViewEditor.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/DefaultViewPanel.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/MappingFunctionFactoryManager.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/VizMapGUI.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/AbstractVisualPropertyEditor.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/ContinuousEditorType.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/ContinuousMappingCellRendererFactory.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/ContinuousMappingEditor.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/EditorManager.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/ListEditor.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/ValueEditor.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/VisualPropertyEditor.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/VisualPropertyEditor2.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/VisualPropertyValueEditor.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/event/LexiconStateChangedEvent.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/event/LexiconStateChangedListener.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/event/VizMapEventHandler.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/event/VizMapEventHandlerManager.html... [@CyAPI.InModule:vizmap-gui-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/VisualMappingFunction.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/VisualMappingFunctionFactory.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/VisualMappingManager.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/VisualPropertyDependency.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/VisualPropertyDependencyFactory.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/VisualStyle.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/VisualStyleFactory.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/SetCurrentVisualStyleEvent.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/SetCurrentVisualStyleListener.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/VisualMappingFunctionChangedEvent.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/VisualMappingFunctionChangedListener.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/VisualMappingFunctionChangeRecord.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/VisualPropertyDependencyChangedEvent.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/VisualPropertyDependencyChangedListener.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/VisualStyleAboutToBeRemovedEvent.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/VisualStyleAboutToBeRemovedListener.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/VisualStyleAddedEvent.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/VisualStyleAddedListener.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/VisualStyleChangedEvent.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/VisualStyleChangedListener.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/VisualStyleChangeRecord.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/VisualStyleSetEvent.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/VisualStyleSetListener.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/mappings/AbstractVisualMappingFunction.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/mappings/BoundaryRangeValues.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/mappings/ContinuousMapping.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/mappings/ContinuousMappingPoint.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/mappings/DiscreteMapping.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/mappings/PassthroughMapping.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/mappings/ValueTranslator.html... [@CyAPI.InModule:vizmap-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/events/RenderingEngineAboutToBeRemovedEvent.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/events/RenderingEngineAboutToBeRemovedListener.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/events/RenderingEngineAddedEvent.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/events/RenderingEngineAddedListener.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/ArrowShapeVisualProperty.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/BasicVisualLexicon.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/BooleanVisualProperty.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/DefaultVisualizableVisualProperty.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/DoubleVisualProperty.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/EdgeBendVisualProperty.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/FontVisualProperty.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/IntegerVisualProperty.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/LineTypeVisualProperty.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/NodeShapeVisualProperty.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/NullVisualProperty.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/PaintVisualProperty.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/StringVisualProperty.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/VisualPropertyUtil.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/AbstractVisualPropertyValue.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/ArrowShape.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/Bend.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/BendFactory.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/CyColumnIdentifier.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/CyColumnIdentifierFactory.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/Handle.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/HandleFactory.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/Justification.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/LineType.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/MappableVisualPropertyValue.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/NodeShape.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/ObjectPosition.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/Position.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/VisualPropertyValue.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/RenderingEngine.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/RenderingEngineFactory.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/RenderingEngineManager.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/annotations/Annotation.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/annotations/AnnotationFactory.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/annotations/AnnotationManager.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/annotations/ArrowAnnotation.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/annotations/ArrowAnnotation.AnchorType.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/annotations/ArrowAnnotation.ArrowEnd.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/annotations/BoundedTextAnnotation.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/annotations/GroupAnnotation.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/annotations/ImageAnnotation.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/annotations/ShapeAnnotation.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/annotations/ShapeAnnotation.ShapeType.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/annotations/TextAnnotation.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/customgraphics/CustomGraphicLayer.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/customgraphics/Cy2DGraphicLayer.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/customgraphics/CyCustomGraphics.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/customgraphics/CyCustomGraphics2.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/customgraphics/CyCustomGraphics2Factory.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/customgraphics/CyCustomGraphicsFactory.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/customgraphics/ImageCustomGraphicLayer.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/customgraphics/PaintedShape.html... [@CyAPI.InModule:presentation-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/AbstractCellEditor.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/AbstractTreeTableModel.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/BasicCollapsiblePanel.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/BasicCollapsiblePanel.CollapseListener.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/CheckBoxJList.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/ColorButton.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/ColumnResizer.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/CyColorChooser.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/DropDownMenuButton.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/FileChooserFilter.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/FileUtil.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/GravityTracker.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/IconManager.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/JMenuTracker.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/JStatusBar.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/JTreeTable.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/JTreeTable.TreeTableCellEditor.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/LookAndFeelUtil.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/MenuGravityTracker.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/OpenBrowser.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/PopupMenuGravityTracker.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/TreeTableModel.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/util/swing/TreeTableModelAdapter.html... [@CyAPI.InModule:swing-util-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/webservice/swing/AbstractWebServiceGUIClient.html... [@CyAPI.InModule:webservice-swing-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/webservice/swing/WebServiceGUI.html... [@CyAPI.InModule:webservice-swing-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/webservice/swing/WebServiceGUIClient.html... [@CyAPI.InModule:webservice-swing-api] {java.runtime.name=OpenJDK Runtime Environment, sun.boot.library.path=/usr/local/openjdk8/jre/lib/amd64, java.vm.version=25.482-b08, java.vm.vendor=OpenJDK BSD Porting Team, java.vendor.url=https://github.com/battleblow/jdk8u/, path.separator=:, java.vm.name=OpenJDK 64-Bit Server VM, file.encoding.pkg=sun.io, user.country=US, sun.java.launcher=SUN_STANDARD, sun.os.patch.level=unknown, java.vm.specification.name=Java Virtual Machine Specification, user.dir=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs, java.runtime.version=1.8.0_482-b08, java.awt.graphicsenv=sun.awt.X11GraphicsEnvironment, java.endorsed.dirs=/usr/local/openjdk8/jre/lib/endorsed, os.arch=amd64, java.io.tmpdir=/tmp/, line.separator= , java.vm.specification.vendor=Oracle Corporation, os.name=FreeBSD, application.home=/usr/local/openjdk8, sun.jnu.encoding=US-ASCII, java.library.path=/usr/local/lib, java.specification.name=Java Platform API Specification, java.class.version=52.0, sun.management.compiler=HotSpot 64-Bit Tiered Compilers, os.version=15.0-RELEASE-p3, user.home=/root, user.timezone=GMT, java.awt.printerjob=sun.print.PSPrinterJob, file.encoding=US-ASCII, java.specification.version=1.8, java.class.path=/usr/local/openjdk8/lib/tools.jar:/usr/local/openjdk8/classes, user.name=root, java.vm.specification.version=1.8, sun.java.command=com.sun.tools.javadoc.Main @options @packages, java.home=/usr/local/openjdk8/jre, sun.arch.data.model=64, user.language=en, java.specification.vendor=Oracle Corporation, awt.toolkit=sun.awt.X11.XToolkit, java.vm.info=mixed mode, java.version=1.8.0_482, java.ext.dirs=/usr/local/openjdk8/jre/lib/ext:/usr/java/packages/lib/ext, sun.boot.class.path=/usr/local/openjdk8/jre/lib/resources.jar:/usr/local/openjdk8/jre/lib/rt.jar:/usr/local/openjdk8/jre/lib/sunrsasign.jar:/usr/local/openjdk8/jre/lib/jsse.jar:/usr/local/openjdk8/jre/lib/jce.jar:/usr/local/openjdk8/jre/lib/charsets.jar:/usr/local/openjdk8/jre/lib/jfr.jar:/usr/local/openjdk8/jre/classes, java.vendor=OpenJDK BSD Porting Team, java.specification.maintenance.version=6, file.separator=/, java.vendor.url.bug=https://bugs.freebsd.org/bugzilla/enter_bug.cgi?product=Ports%20%26%20Packages&component=Individual%20Port(s)&short_desc=java/openjdk8%3A%20, sun.io.unicode.encoding=UnicodeLittle, sun.cpu.endian=little, sun.cpu.isalist=} Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/overview-frame.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/app/package-frame.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/app/package-summary.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/app/package-tree.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/app/event/package-frame.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/app/event/package-summary.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/app/event/package-tree.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/app/swing/package-frame.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/app/swing/package-summary.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/app/swing/package-tree.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/package-frame.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/package-summary.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/package-tree.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/events/package-frame.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/events/package-summary.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/events/package-tree.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/package-frame.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/package-summary.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/application/swing/package-tree.html... 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Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/create/class-use/CreateNetworkViewTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/create/class-use/CloneNetworkTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/class-use/UnHideAllTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/class-use/UnHideAllNodesTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/class-use/UnHideAllEdgesTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/class-use/HideUnselectedTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/class-use/HideUnselectedNodesTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/class-use/HideUnselectedEdgesTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/class-use/HideSelectedTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/class-use/HideSelectedNodesTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/hide/class-use/HideSelectedEdgesTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/class-use/SelectFromFileListTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/class-use/SelectFirstNeighborsTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/class-use/SelectFirstNeighborsNodeViewTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/class-use/SelectConnectedNodesTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/class-use/SelectAllTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/class-use/SelectAllNodesTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/class-use/SelectAllEdgesTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/class-use/SelectAdjacentEdgesTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/class-use/InvertSelectedNodesTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/class-use/InvertSelectedEdgesTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/class-use/DeselectAllTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/class-use/DeselectAllNodesTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/select/class-use/DeselectAllEdgesTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/visualize/class-use/ApplyVisualStyleTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/visualize/class-use/ApplyPreferredLayoutTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/analyze/class-use/AnalyzeNetworkCollectionTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/edit/class-use/UnGroupTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/edit/class-use/UnGroupNodesTaskFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/task/edit/class-use/RenameColumnTaskFactory.html... 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Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/class-use/Visualizable.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/class-use/VisualProperty.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/class-use/VisualLexiconNode.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/class-use/VisualLexicon.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/class-use/View.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/class-use/Range.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/class-use/NullDataType.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/class-use/NullCyNetworkView.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/class-use/DiscreteRange.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/class-use/CyNetworkViewManager.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/class-use/CyNetworkViewFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/class-use/CyNetworkView.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/class-use/ContinuousRange.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/class-use/AbstractVisualProperty.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/class-use/ViewChangedListener.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/class-use/ViewChangedEvent.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/class-use/ViewChangeRecord.html... 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Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/class-use/AddedEdgeViewsEvent.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/class-use/AboutToRemoveNodeViewsListener.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/class-use/AboutToRemoveNodeViewsEvent.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/class-use/AboutToRemoveEdgeViewsListener.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/model/events/class-use/AboutToRemoveEdgeViewsEvent.html... 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Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/class-use/VizmapWriterManager.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/class-use/VizmapWriterFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/class-use/PresentationWriterManager.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/class-use/PresentationWriterFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/class-use/CyWriterManager.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/class-use/CyWriterFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/class-use/CyWriter.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/class-use/CyTransformerWriter.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/class-use/CyTableWriterManager.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/class-use/CyTableWriterFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/class-use/CySessionWriterManager.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/io/write/class-use/CySessionWriterFactory.html... 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Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/undo/class-use/UndoSupport.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/undo/class-use/AbstractCyEdit.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/util/class-use/UserAction.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/class-use/TunableUIHelper.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/class-use/TaskStatusPanelFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/class-use/StatusBarPanelFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/class-use/SimpleGUITunableHandlerFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/class-use/RequestsUIHelper.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/class-use/PanelTaskManager.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/class-use/GUITunableHandlerFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/class-use/GUITunableHandler.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/class-use/DynamicSubmenuListener.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/class-use/DirectlyPresentableTunableHandler.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/class-use/DialogTaskManager.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/class-use/AbstractGUITunableHandler.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/class-use/AbstractGUITunableHandler.TunableFieldPanel.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/swing/undo/class-use/SwingUndoSupport.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/util/class-use/PropertySheetUtil.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/util/class-use/DiscreteMappingGenerator.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/class-use/VizMapGUI.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/class-use/MappingFunctionFactoryManager.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/class-use/DefaultViewPanel.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/class-use/DefaultViewEditor.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/class-use/VisualPropertyValueEditor.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/class-use/VisualPropertyEditor2.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/class-use/VisualPropertyEditor.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/class-use/ValueEditor.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/class-use/ListEditor.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/class-use/EditorManager.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/class-use/ContinuousMappingEditor.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/class-use/ContinuousMappingCellRendererFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/class-use/ContinuousEditorType.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/editor/class-use/AbstractVisualPropertyEditor.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/event/class-use/VizMapEventHandlerManager.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/event/class-use/VizMapEventHandler.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/event/class-use/LexiconStateChangedListener.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/gui/event/class-use/LexiconStateChangedEvent.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/class-use/VisualStyleFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/class-use/VisualStyle.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/class-use/VisualPropertyDependencyFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/class-use/VisualPropertyDependency.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/class-use/VisualMappingManager.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/class-use/VisualMappingFunctionFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/class-use/VisualMappingFunction.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/class-use/VisualStyleSetListener.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/class-use/VisualStyleSetEvent.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/class-use/VisualStyleChangedListener.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/class-use/VisualStyleChangedEvent.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/class-use/VisualStyleChangeRecord.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/class-use/VisualStyleAddedListener.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/class-use/VisualStyleAddedEvent.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/class-use/VisualStyleAboutToBeRemovedListener.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/class-use/VisualStyleAboutToBeRemovedEvent.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/class-use/VisualPropertyDependencyChangedListener.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/class-use/VisualPropertyDependencyChangedEvent.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/class-use/VisualMappingFunctionChangedListener.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/class-use/VisualMappingFunctionChangedEvent.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/class-use/VisualMappingFunctionChangeRecord.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/class-use/SetCurrentVisualStyleListener.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/events/class-use/SetCurrentVisualStyleEvent.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/mappings/class-use/ValueTranslator.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/mappings/class-use/PassthroughMapping.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/mappings/class-use/DiscreteMapping.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/mappings/class-use/ContinuousMappingPoint.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/mappings/class-use/ContinuousMapping.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/mappings/class-use/BoundaryRangeValues.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/vizmap/mappings/class-use/AbstractVisualMappingFunction.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/events/class-use/RenderingEngineAddedListener.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/events/class-use/RenderingEngineAddedEvent.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/events/class-use/RenderingEngineAboutToBeRemovedListener.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/events/class-use/RenderingEngineAboutToBeRemovedEvent.html... 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Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/class-use/Position.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/class-use/ObjectPosition.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/class-use/NodeShape.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/class-use/MappableVisualPropertyValue.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/class-use/LineType.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/class-use/Justification.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/class-use/HandleFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/class-use/Handle.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/class-use/CyColumnIdentifierFactory.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/view/presentation/property/values/class-use/CyColumnIdentifier.html... 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Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/org/cytoscape/work/util/package-use.html... Building index for all the packages and classes... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/overview-tree.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/index-all.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/deprecated-list.html... Building index for all classes... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/allclasses-frame.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/allclasses-noframe.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/index.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/overview-summary.html... Generating /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/apidocs/help-doc.html... 100 warnings [WARNING] Javadoc Warnings [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/CyServiceRegistrar.java:29: error: package org.osgi.framework does not exist [WARNING] import org.osgi.framework.BundleContext; [WARNING] ^ [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:37: error: package org.osgi.framework does not exist [WARNING] import org.osgi.framework.BundleActivator; [WARNING] ^ [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:38: error: package org.osgi.framework does not exist [WARNING] import org.osgi.framework.BundleContext; [WARNING] ^ [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:39: error: package org.osgi.framework does not exist [WARNING] import org.osgi.framework.ServiceReference; [WARNING] ^ [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:40: error: package org.osgi.framework does not exist [WARNING] import org.osgi.framework.ServiceRegistration; [WARNING] ^ [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:55: error: cannot find symbol [WARNING] public abstract class AbstractCyActivator implements BundleActivator { [WARNING] ^ [WARNING] symbol: class BundleActivator [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:59: error: cannot find symbol [WARNING] private final Map> serviceRegistrations; [WARNING] ^ [WARNING] symbol: class ServiceRegistration [WARNING] location: class AbstractCyActivator [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/CyServiceListener.java:34: error: package org.osgi.framework does not exist [WARNING] import org.osgi.framework.BundleContext; [WARNING] ^ [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/CyServiceListener.java:35: error: package org.osgi.framework does not exist [WARNING] import org.osgi.framework.Constants; [WARNING] ^ [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/CyServiceListener.java:36: error: package org.osgi.framework does not exist [WARNING] import org.osgi.framework.Filter; [WARNING] ^ [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/CyServiceListener.java:37: error: package org.osgi.framework does not exist [WARNING] import org.osgi.framework.InvalidSyntaxException; [WARNING] ^ [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/CyServiceListener.java:38: error: package org.osgi.framework does not exist [WARNING] import org.osgi.framework.ServiceReference; [WARNING] ^ [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/CyServiceListener.java:39: error: package org.osgi.util.tracker does not exist [WARNING] import org.osgi.util.tracker.ServiceTracker; [WARNING] ^ [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/CyServiceListener.java:45: error: cannot find symbol [WARNING] public class CyServiceListener extends ServiceTracker { [WARNING] ^ [WARNING] symbol: class ServiceTracker [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:61: error: cannot find symbol [WARNING] private final List gottenServices; [WARNING] ^ [WARNING] symbol: class ServiceReference [WARNING] location: class AbstractCyActivator [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:77: error: cannot find symbol [WARNING] Map> getServiceRegistrations(){ [WARNING] ^ [WARNING] symbol: class ServiceRegistration [WARNING] location: class AbstractCyActivator [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:89: error: cannot find symbol [WARNING] public final void stop(BundleContext bc) { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class AbstractCyActivator [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:129: error: cannot find symbol [WARNING] protected final S getService(BundleContext bc, Class serviceClass) { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class AbstractCyActivator [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:146: error: cannot find symbol [WARNING] protected final S getService(BundleContext bc, Class serviceClass, String filter) { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class AbstractCyActivator [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:165: error: cannot find symbol [WARNING] protected final void registerServiceListener(final BundleContext bc, final Object listener, final String registerMethodName, final String unregisterMethodName, final Class serviceClass, final Class methodClass, final String additionalFilter) { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class AbstractCyActivator [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:179: error: cannot find symbol [WARNING] protected final void registerServiceListener(final BundleContext bc, final Object listener, final String registerMethodName, final String unregisterMethodName, final Class serviceClass) { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class AbstractCyActivator [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:194: error: cannot find symbol [WARNING] protected final void registerServiceListener(final BundleContext bc, final Object listener, final String registerMethodName, final String unregisterMethodName, final Class serviceClass, final String additionalFilter) { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class AbstractCyActivator [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:216: error: cannot find symbol [WARNING] protected void registerServiceListener(BundleContext bc, BiConsumer> registerConsumer, BiConsumer> unregisterConsumer, Class serviceClass) { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class AbstractCyActivator [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:239: error: cannot find symbol [WARNING] protected void registerServiceListener(BundleContext bc, BiConsumer> registerConsumer, BiConsumer> unregisterConsumer, Class serviceClass, String additionalFilter) { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class AbstractCyActivator [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:256: error: cannot find symbol [WARNING] protected final void registerServiceListener(final BundleContext bc, final Object listener, final String registerMethodName, final String unregisterMethodName, final Class serviceClass, final Class methodClass) { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class AbstractCyActivator [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:269: error: cannot find symbol [WARNING] protected final void registerAllServices(final BundleContext bc, final Object service, final Properties props) { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class AbstractCyActivator [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:276: error: cannot find symbol [WARNING] protected final void registerAllServices(final BundleContext bc, final Object service) { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class AbstractCyActivator [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:289: error: cannot find symbol [WARNING] protected final void registerService(final BundleContext bc, final Object service, final Class serviceClass, final Properties props) { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class AbstractCyActivator [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/AbstractCyActivator.java:296: error: cannot find symbol [WARNING] protected final void registerService(final BundleContext bc, final Object service, final Class serviceClass) { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class AbstractCyActivator [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/CyServiceListener.java:53: error: cannot find symbol [WARNING] public CyServiceListener(BundleContext bc, Object target, String registerMethodName, String unregisterMethodName, Class serviceClass, Class methodClass, String additionalFilter) throws NoSuchMethodException { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class CyServiceListener [WARNING] where S is a type-variable: [WARNING] S extends Object declared in class CyServiceListener [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/CyServiceListener.java:60: error: cannot find symbol [WARNING] public CyServiceListener(BundleContext bc, BiConsumer> registerConsumer, BiConsumer> unregisterConsumer, Class serviceClass, String additionalFilter) { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class CyServiceListener [WARNING] where S is a type-variable: [WARNING] S extends Object declared in class CyServiceListener [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/CyServiceListener.java:110: error: cannot find symbol [WARNING] private static Filter genFilter(BundleContext context, Class serviceClass, String additionalFilter) { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class CyServiceListener [WARNING] where S is a type-variable: [WARNING] S extends Object declared in class CyServiceListener [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/CyServiceListener.java:110: error: cannot find symbol [WARNING] private static Filter genFilter(BundleContext context, Class serviceClass, String additionalFilter) { [WARNING] ^ [WARNING] symbol: class Filter [WARNING] location: class CyServiceListener [WARNING] where S is a type-variable: [WARNING] S extends Object declared in class CyServiceListener [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/CyServiceListener.java:132: error: cannot find symbol [WARNING] public Object addingService(ServiceReference ref) { [WARNING] ^ [WARNING] symbol: class ServiceReference [WARNING] location: class CyServiceListener [WARNING] where S is a type-variable: [WARNING] S extends Object declared in class CyServiceListener [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/CyServiceListener.java:142: error: cannot find symbol [WARNING] public void removedService(ServiceReference ref, Object service) { [WARNING] ^ [WARNING] symbol: class ServiceReference [WARNING] location: class CyServiceListener [WARNING] where S is a type-variable: [WARNING] S extends Object declared in class CyServiceListener [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/CyServiceListener.java:150: error: cannot find symbol [WARNING] private Map getProperties(ServiceReference ref) { [WARNING] ^ [WARNING] symbol: class ServiceReference [WARNING] location: class CyServiceListener [WARNING] where S is a type-variable: [WARNING] S extends Object declared in class CyServiceListener [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-application-api/src/main/java/org/cytoscape/application/swing/CyHelpBroker.java:27: error: package javax.help does not exist [WARNING] import javax.help.HelpBroker; [WARNING] ^ [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-application-api/src/main/java/org/cytoscape/application/swing/CyHelpBroker.java:28: error: package javax.help does not exist [WARNING] import javax.help.HelpSet; [WARNING] ^ [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-application-api/src/main/java/org/cytoscape/application/swing/CyHelpBroker.java:47: error: cannot find symbol [WARNING] public HelpBroker getHelpBroker(); [WARNING] ^ [WARNING] symbol: class HelpBroker [WARNING] location: interface CyHelpBroker [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-application-api/src/main/java/org/cytoscape/application/swing/CyHelpBroker.java:55: error: cannot find symbol [WARNING] public HelpSet getHelpSet(); [WARNING] ^ [WARNING] symbol: class HelpSet [WARNING] location: interface CyHelpBroker [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/ServiceUtil.java:33: error: package org.osgi.framework does not exist [WARNING] import org.osgi.framework.BundleContext; [WARNING] ^ [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/ServiceUtil.java:34: error: package org.osgi.framework does not exist [WARNING] import org.osgi.framework.ServiceReference; [WARNING] ^ [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/ServiceUtil.java:35: error: package org.osgi.framework does not exist [WARNING] import org.osgi.framework.ServiceRegistration; [WARNING] ^ [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/ServiceUtil.java:59: error: cannot find symbol [WARNING] public static S getService(BundleContext bc, Class serviceClass, List gottenServices) { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class ServiceUtil [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/ServiceUtil.java:59: error: cannot find symbol [WARNING] public static S getService(BundleContext bc, Class serviceClass, List gottenServices) { [WARNING] ^ [WARNING] symbol: class ServiceReference [WARNING] location: class ServiceUtil [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/ServiceUtil.java:87: error: cannot find symbol [WARNING] public static S getService(BundleContext bc, Class serviceClass, String filter, List gottenServices) { [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class ServiceUtil [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/ServiceUtil.java:87: error: cannot find symbol [WARNING] public static S getService(BundleContext bc, Class serviceClass, String filter, List gottenServices) { [WARNING] ^ [WARNING] symbol: class ServiceReference [WARNING] location: class ServiceUtil [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/ServiceUtil.java:117: error: cannot find symbol [WARNING] public static void registerServiceListener(BundleContext bc, Object listener, String registerMethodName, [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class ServiceUtil [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/ServiceUtil.java:149: error: cannot find symbol [WARNING] public static void registerServiceListener(BundleContext bc, BiConsumer> registerConsumer, [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class ServiceUtil [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/ServiceUtil.java:172: error: cannot find symbol [WARNING] public static void registerService(final BundleContext bc, final Object service, final Class serviceClass, final Properties props, [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class ServiceUtil [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/ServiceUtil.java:173: error: cannot find symbol [WARNING] Map> serviceRegistrations) { [WARNING] ^ [WARNING] symbol: class ServiceRegistration [WARNING] location: class ServiceUtil [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/ServiceUtil.java:208: error: cannot find symbol [WARNING] public static void registerAllServices(final BundleContext bc, final Object service, final Properties props, [WARNING] ^ [WARNING] symbol: class BundleContext [WARNING] location: class ServiceUtil [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/service-api/src/main/java/org/cytoscape/service/util/internal/utils/ServiceUtil.java:209: error: cannot find symbol [WARNING] Map> serviceRegistrations) { [WARNING] ^ [WARNING] symbol: class ServiceRegistration [WARNING] location: class ServiceUtil [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/src/main/java/org/cytoscape/app/swing/AbstractCySwingApp.java:64: warning - @param argument "adapter" is not a parameter name. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/session-api/src/main/java/org/cytoscape/session/CySession.java:258: warning - Tag @link: reference not found: CyEdge [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/session-api/src/main/java/org/cytoscape/session/CySession.java:258: warning - Tag @link: reference not found: CyEdge [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/session-api/src/main/java/org/cytoscape/session/CySession.java:258: warning - Tag @link: reference not found: CyEdge [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/session-api/src/main/java/org/cytoscape/session/CySession.java:273: warning - Tag @link: reference not found: CyEdge [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/session-api/src/main/java/org/cytoscape/session/CySession.java:273: warning - Tag @link: reference not found: CyEdge [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/session-api/src/main/java/org/cytoscape/session/CySession.java:273: warning - Tag @link: reference not found: CyEdge [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/session-api/src/main/java/org/cytoscape/session/CySession.java:122: warning - @param argument "views" is not a parameter name. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/session-api/src/main/java/org/cytoscape/session/CySession.java:200: warning - Tag @link: reference not found: CyEdge [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/model-api/src/main/java/org/cytoscape/model/events/RowsSetEvent.java:60: warning - @return tag has no arguments. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/model-api/src/main/java/org/cytoscape/model/events/RowsSetEvent.java:69: warning - @return tag has no arguments. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/core-task-api/src/main/java/org/cytoscape/task/edit/MapGlobalToLocalTableTaskFactory.java:49: warning - @param argument "localTable" is not a parameter name. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/viewmodel-api/src/main/java/org/cytoscape/view/model/CyNetworkView.java:134: warning - Tag @see: can't find getNetworkViewRenderer(rendererId) in org.cytoscape.application.CyApplicationManager [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/src/main/java/org/cytoscape/io/read/AbstractCyNetworkReader.java:272: warning - @return tag has no arguments. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/src/main/java/org/cytoscape/io/read/CyPropertyReader.java:47: warning - Tag @link: reference not found: org.cytoscape.property.session.Cysession [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/src/main/java/org/cytoscape/io/read/CyPropertyReader.java:57: warning - Tag @link: reference not found: org.cytoscape.property.session.Cysession [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/src/main/java/org/cytoscape/io/read/CySessionReader.java:44: warning - Tag @link: reference not found: org.cytoscape.property.session.Cysession [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/src/main/java/org/cytoscape/io/read/CySessionReader.java:44: warning - Tag @link: reference not found: org.cytoscape.property.session.Cysession [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/io-api/src/main/java/org/cytoscape/io/read/CySessionReader.java:44: warning - Tag @link: reference not found: org.cytoscape.property.session.Cysession [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/group-api/src/main/java/org/cytoscape/group/CyGroupSettingsManager.java:53: warning - Tag @link: reference not found: DoubleClickAciton [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/group-api/src/main/java/org/cytoscape/group/CyGroupSettingsManager.java:53: warning - Tag @link: reference not found: DoubleClickAciton [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/group-api/src/main/java/org/cytoscape/group/data/CyGroupAggregationManager.java:41: warning - @CyAPI.Api.Class is an unknown tag. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/layout-api/src/main/java/org/cytoscape/view/layout/AbstractParallelPartitionLayoutTask.java:68: warning - @param argument "name" is not a parameter name. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/layout-api/src/main/java/org/cytoscape/view/layout/AbstractPartitionLayoutTask.java:105: warning - @param argument "name" is not a parameter name. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/java/org/cytoscape/property/AbstractConfigDirPropsReader.java:57: warning - Tag @link: reference not found: CyProperty.DEFAULT_PROPS_CONFIG_DIR [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/java/org/cytoscape/property/AbstractConfigDirPropsReader.java:78: warning - Tag @link: reference not found: CyProperty.SavePolicy.CONFIG_DIR [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/java/org/cytoscape/property/AbstractConfigDirPropsReader.java:78: warning - Tag @link: reference not found: CyProperty.SavePolicy.SESSION_FILE_AND_CONFIG_DIR [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJob.java:43: warning - Tag @link: can't find getCyJob(String, String) in org.cytoscape.jobs.CyJobExecutionService [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJob.java:102: warning - @param argument "the" is not a parameter name. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJob.java:110: warning - @param argument "the" is not a parameter name. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJobData.java:47: warning - Tag @see: can't find unSerialize(Object) in org.cytoscape.jobs.CyJobDataService [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJobData.java:47: warning - Tag @see cannot be used in inline documentation. It can only be used in the following types of documentation: overview, package, class/interface, constructor, field, method. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJobData.java:47: warning - Tag @see cannot be used in inline documentation. It can only be used in the following types of documentation: overview, package, class/interface, constructor, field, method. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJobData.java:47: warning - Tag @see cannot be used in inline documentation. It can only be used in the following types of documentation: overview, package, class/interface, constructor, field, method. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJobData.java:47: warning - Tag @see cannot be used in inline documentation. It can only be used in the following types of documentation: overview, package, class/interface, constructor, field, method. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJobDataService.java:90: warning - @param argument "item" is not a parameter name. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJobDataService.java:119: warning - Tag @link: reference not found: org.cytoscape.modelCyNode [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJobDataService.java:119: warning - Tag @link: reference not found: org.cytoscape.modelCyEdge [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJobDataService.java:180: warning - Tag @link: reference not found: CyNode [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJobDataService.java:180: warning - Tag @link: reference not found: CyEdge [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJobDataService.java:286: warning - @param argument "object" is not a parameter name. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJobDataService.java:298: warning - @param argument "object" is not a parameter name. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJobExecutionService.java:109: warning - Tag @link: can't find CANCELLED in org.cytoscape.jobs.CyJobStatus.Status [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJobStatus.java:35: warning - @CyAPI.Api.Class is an unknown tag. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/CyJobStatus.java:100: warning - @param argument "status" is not a parameter name. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/SUIDUtil.java:49: warning - @CyAPI.Class is an unknown tag. [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/jobs-api/src/main/java/org/cytoscape/jobs/SUIDUtil.java:125: warning - Tag @link: missing '#': "SaveSUID.restoreNetwork()" [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/swing-app-api-3.6.1-javadoc.jar [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ swing-app-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ swing-app-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ swing-app-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/swing-app-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ swing-app-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6c2cded1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4ce03f90 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@68f2f8bf readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5e8fb165 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1014fe1a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@72cf3c32 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ swing-app-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ swing-app-api --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ swing-app-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/swing-app-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/swing-app-api/3.6.1/swing-app-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/swing-app-api/3.6.1/swing-app-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/swing-app-api-3.6.1-jar-with-dependencies.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/swing-app-api/3.6.1/swing-app-api-3.6.1-jar-with-dependencies.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/swing-app-api-3.6.1-javadoc.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/swing-app-api/3.6.1/swing-app-api-3.6.1-javadoc.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/swing-app-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/swing-app-api/3.6.1/swing-app-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ swing-app-api --- [INFO] Installing org/cytoscape/swing-app-api/3.6.1/swing-app-api-3.6.1.jar [INFO] Installing org/cytoscape/swing-app-api/3.6.1/swing-app-api-3.6.1-jar-with-dependencies.jar [INFO] Writing OBR metadata [INFO] [INFO] -----------------------< org.cytoscape:util-api >----------------------- [INFO] Building Cytoscape Util API (util-api) 3.6.1 [32/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ util-api --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/util-api/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.0:compile (default-compile) @ util-api --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/util-api/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ util-api --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.0:testCompile (default-testCompile) @ util-api --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ util-api --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ util-api --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ util-api >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ util-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ util-api --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/util-api/target/util-api-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ util-api >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2e1b5d65 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@10165d6b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@385283ab readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@419e7d71 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@56bef874 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@611c7ab5 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ util-api <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ util-api --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ util-api --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/util-api/target/util-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/util-api/3.6.1/util-api-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/util-api/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/util-api/3.6.1/util-api-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/util-api/target/util-api-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/util-api/3.6.1/util-api-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ util-api --- [INFO] Installing org/cytoscape/util-api/3.6.1/util-api-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ----------------------< org.cytoscape:api-bundle >---------------------- [INFO] Building Cytoscape API (api-bundle) 3.6.1 [33/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ api-bundle --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/api-bundle/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ api-bundle --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ api-bundle --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ api-bundle --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ api-bundle --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:2.4.0:bundle (default-bundle) @ api-bundle --- [WARNING] Bundle org.cytoscape:api-bundle:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [!*] [WARNING] Bundle org.cytoscape:api-bundle:bundle:3.6.1 : The JAR is empty: The instructions for the JAR named org.cytoscape.api-bundle did not cause any content to be included, this is likely wrong [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ api-bundle >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ api-bundle <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ api-bundle --- [INFO] No sources in project. Archive not created. [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ api-bundle >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@626b0915 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@16140eb8 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5fbed8f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@92d116f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@e216b43 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@523cf883 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ api-bundle <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ api-bundle --- [INFO] [INFO] --- maven-bundle-plugin:2.4.0:bundle (wrap-jars) @ api-bundle --- [WARNING] Bundle org.cytoscape:api-bundle:bundle:3.6.1 : Split package, multiple jars provide the same package: Use Import/Export Package directive -split-package:=(merge-first|merge-last|error|first) to get rid of this warning Package found in [Jar:org.osgi.core, Jar:presentation-api] Class path [Jar:., Jar:ci-api, Jar:org.osgi.core, Jar:event-api, Jar:model-api, Jar:viewmodel-api, Jar:core-task-api, Jar:equations-api, Jar:io-api, Jar:layout-api, Jar:app-api, Jar:swing-app-api, Jar:presentation-api, Jar:property-api, Jar:session-api, Jar:swing-application-api, Jar:vizmap-api, Jar:vizmap-gui-api, Jar:webservice-api, Jar:work-api, Jar:work-swing-api, Jar:service-api, Jar:swing-util-api, Jar:application-api, Jar:datasource-api, Jar:group-api, Jar:webservice-swing-api, Jar:command-executor-api, Jar:filter-api, Jar:jobs-api, Jar:util-api, Jar:pax-logging-api] [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ api-bundle --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/api-bundle/target/api-bundle-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/api-bundle/3.6.1/api-bundle-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/api-bundle/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/api-bundle/3.6.1/api-bundle-3.6.1.pom [INFO] [INFO] --- maven-bundle-plugin:2.4.0:install (default-install) @ api-bundle --- [INFO] Installing org/cytoscape/api-bundle/3.6.1/api-bundle-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ---------------------< org.cytoscape:impl-parent >---------------------- [INFO] Building Cytoscape Implementation Parent Project POM 3.6.1 [34/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ impl-parent >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ impl-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ impl-parent --- [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ impl-parent >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5f7a4b31 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@68cb8458 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5dc8c66b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1230307c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4c944613 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3451ecc4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ impl-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ impl-parent --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/target/impl-parent-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ impl-parent --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/impl-parent/3.6.1/impl-parent-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/target/impl-parent-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/impl-parent/3.6.1/impl-parent-3.6.1-sources.jar [INFO] [INFO] --------------------< org.cytoscape:equations-impl >-------------------- [INFO] Building Cytoscape Equations Impl (equations-impl) 3.6.1 [35/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ equations-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/equations-impl/src/main/resources [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/equations-impl/src/integration/resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ equations-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 82 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/equations-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ equations-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ equations-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ equations-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ equations-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ equations-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ equations-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ equations-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/equations-impl/target/equations-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ equations-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@40495dfa readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@171239fe readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5074f7b6 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@8f9310c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3ca8ac78 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6928ccaa readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ equations-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ equations-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ equations-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/equations-impl/target/equations-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/equations-impl/3.6.1/equations-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/equations-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/equations-impl/3.6.1/equations-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/equations-impl/target/equations-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/equations-impl/3.6.1/equations-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ equations-impl --- [INFO] Installing org/cytoscape/equations-impl/3.6.1/equations-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ------------------< org.cytoscape:model-impl-parent >------------------- [INFO] Building Cytoscape Model Impl Parent (model-impl-parent) 3.6.1 [36/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ model-impl-parent >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ model-impl-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ model-impl-parent --- [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ model-impl-parent >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6ddc993a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5db49f37 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5d74972b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4e1afb3e readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1b245c6e readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3f442acd readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ model-impl-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ model-impl-parent --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/target/model-impl-parent-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ model-impl-parent --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/model-impl-parent/3.6.1/model-impl-parent-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/target/model-impl-parent-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/model-impl-parent/3.6.1/model-impl-parent-3.6.1-sources.jar [INFO] [INFO] ----------------------< org.cytoscape:model-impl >---------------------- [INFO] Building Cytoscape Model Impl (model-impl) 3.6.1 [37/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ model-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ model-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 37 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/impl/src/main/java/org/cytoscape/model/internal/RemovedAttributesCache.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/impl/src/main/java/org/cytoscape/model/internal/RemovedAttributesCache.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ model-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ model-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ model-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ model-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ model-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ model-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ model-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/impl/target/model-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ model-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@40f48d89 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@289d23b3 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@23b60810 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@762195d1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7e840794 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@64848da6 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ model-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ model-impl --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ model-impl --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ model-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/impl/target/model-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/model-impl/3.6.1/model-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/model-impl/3.6.1/model-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/impl/target/model-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/model-impl/3.6.1/model-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ model-impl --- [INFO] Installing org/cytoscape/model-impl/3.6.1/model-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ----------------< org.cytoscape:command-executor-impl >----------------- [INFO] Building Cytoscape Command Executor Impl (command-executor-impl) 3.6.1 [38/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ command-executor-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/command-executor-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ command-executor-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 41 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/command-executor-impl/target/classes [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/command-executor-impl/src/main/java/org/cytoscape/command/internal/available/AvailableCommandsImpl.java:[233,23] getArgValue(java.lang.String,java.lang.String,java.lang.String) in org.cytoscape.command.AvailableCommands has been deprecated [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/command-executor-impl/src/main/java/org/cytoscape/command/internal/CyActivator.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/command-executor-impl/src/main/java/org/cytoscape/command/internal/CyActivator.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ command-executor-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ command-executor-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ command-executor-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ command-executor-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ command-executor-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ command-executor-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ command-executor-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/command-executor-impl/target/command-executor-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ command-executor-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@431a0a27 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6d34daf readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7e69a248 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@63be89e4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@38aa83a0 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7c64ff25 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ command-executor-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ command-executor-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ command-executor-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/command-executor-impl/target/command-executor-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/command-executor-impl/3.6.1/command-executor-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/command-executor-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/command-executor-impl/3.6.1/command-executor-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/command-executor-impl/target/command-executor-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/command-executor-impl/3.6.1/command-executor-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ command-executor-impl --- [INFO] Installing org/cytoscape/command-executor-impl/3.6.1/command-executor-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ----------------------< org.cytoscape:ding-impl >----------------------- [INFO] Building Cytoscape Ding Impl Parent (ding-impl) 3.6.1 [39/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ ding-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ ding-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ ding-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ ding-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6f9166e3 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@63cf11c9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@71a3ba56 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4eb701cc readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7afaf8f4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7a6f5919 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ ding-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ ding-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/target/ding-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ ding-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/ding-impl/3.6.1/ding-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/target/ding-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/ding-impl/3.6.1/ding-impl-3.6.1-sources.jar [INFO] [INFO] ----------------< org.cytoscape:ding-presentation-impl >---------------- [INFO] Building Cytoscape Ding View/Presentation Impl (ding-presentation-impl) 3.6.1 [40/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ ding-presentation-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 42 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ ding-presentation-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 374 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/ding-presentation-impl/target/classes [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/editor/CyCustomGraphicsValueEditor.java:[51,37] org.cytoscape.view.vizmap.gui.DefaultViewPanel in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/editor/DiscreteValueList.java:[42,37] org.cytoscape.view.vizmap.gui.DefaultViewPanel in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/editor/CyCustomGraphicsValueEditor.java:[361,33] org.cytoscape.view.vizmap.gui.DefaultViewPanel in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/editor/CyCustomGraphicsValueEditor.java:[361,93] org.cytoscape.view.vizmap.gui.DefaultViewPanel in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/editor/DiscreteValueList.java:[81,23] org.cytoscape.view.vizmap.gui.DefaultViewPanel in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/editor/DiscreteValueList.java:[84,82] org.cytoscape.view.vizmap.gui.DefaultViewPanel in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/editor/DiscreteValueList.java:[125,94] getRenderingEngine() in org.cytoscape.view.vizmap.gui.DefaultViewPanel has been deprecated [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/CyAnnotator.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/CyAnnotator.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ ding-presentation-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ ding-presentation-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ ding-presentation-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ ding-presentation-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ ding-presentation-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ ding-presentation-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ ding-presentation-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/ding-presentation-impl/target/ding-presentation-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ ding-presentation-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@56e66791 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4e9bc9d9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5070b1c9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7f6845ca readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@48456254 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@43b3f643 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ ding-presentation-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ ding-presentation-impl --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ ding-presentation-impl --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ ding-presentation-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/ding-presentation-impl/target/ding-presentation-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/ding-presentation-impl/3.6.1/ding-presentation-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/ding-presentation-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/ding-presentation-impl/3.6.1/ding-presentation-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/ding-presentation-impl/target/ding-presentation-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/ding-presentation-impl/3.6.1/ding-presentation-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ ding-presentation-impl --- [INFO] Installing org/cytoscape/ding-presentation-impl/3.6.1/ding-presentation-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ----------------< org.cytoscape:viewmodel-impl-parent >----------------- [INFO] Building Cytoscape View Model Impl Parent (viewmodel-impl-parent) 3.6.1 [41/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ viewmodel-impl-parent >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ viewmodel-impl-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ viewmodel-impl-parent --- [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ viewmodel-impl-parent >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1f4585bf readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@234e41c4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@97711ac readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3ca20645 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@73092f19 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@39cfd458 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ viewmodel-impl-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ viewmodel-impl-parent --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/viewmodel-impl/target/viewmodel-impl-parent-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ viewmodel-impl-parent --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/viewmodel-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/viewmodel-impl-parent/3.6.1/viewmodel-impl-parent-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/viewmodel-impl/target/viewmodel-impl-parent-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/viewmodel-impl-parent/3.6.1/viewmodel-impl-parent-3.6.1-sources.jar [INFO] [INFO] --------------------< org.cytoscape:viewmodel-impl >-------------------- [INFO] Building Cytoscape View Model Impl (viewmodel-impl) 3.6.1 [42/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ viewmodel-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/viewmodel-impl/impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ viewmodel-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/viewmodel-impl/impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ viewmodel-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ viewmodel-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ viewmodel-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ viewmodel-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ viewmodel-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ viewmodel-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ viewmodel-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/viewmodel-impl/impl/target/viewmodel-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ viewmodel-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@16e37b23 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@12846638 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@738c318b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4a85dd0d readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@8298aa readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2080cfef readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ viewmodel-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ viewmodel-impl --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ viewmodel-impl --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ viewmodel-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/viewmodel-impl/impl/target/viewmodel-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/viewmodel-impl/3.6.1/viewmodel-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/viewmodel-impl/impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/viewmodel-impl/3.6.1/viewmodel-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/viewmodel-impl/impl/target/viewmodel-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/viewmodel-impl/3.6.1/viewmodel-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ viewmodel-impl --- [INFO] Installing org/cytoscape/viewmodel-impl/3.6.1/viewmodel-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ----------------------< org.cytoscape:group-impl >---------------------- [INFO] Building Cytoscape Groups Impl (group-impl) 3.6.1 [43/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ group-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/group-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ group-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 34 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/group-impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/group-impl/src/main/java/org/cytoscape/group/internal/data/CyGroupSettingsImpl.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/group-impl/src/main/java/org/cytoscape/group/internal/data/CyGroupSettingsImpl.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ group-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ group-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ group-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ group-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ group-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ group-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ group-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/group-impl/target/group-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ group-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6ebcab1f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3c9deb69 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5fbd16be readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3743bce5 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2cbafe78 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5572a17b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ group-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ group-impl --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ group-impl --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ group-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/group-impl/target/group-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/group-impl/3.6.1/group-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/group-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/group-impl/3.6.1/group-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/group-impl/target/group-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/group-impl/3.6.1/group-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ group-impl --- [INFO] Installing org/cytoscape/group-impl/3.6.1/group-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ------------------< org.cytoscape:event-impl-parent >------------------- [INFO] Building Cytoscape Event Impl Parent (event-impl-parent) 3.6.1 [44/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ event-impl-parent >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ event-impl-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ event-impl-parent --- [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ event-impl-parent >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@21f98398 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4daa36a9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6ce23991 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6a747a3f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@334eeb2a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@50cab47f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ event-impl-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ event-impl-parent --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/event-impl/target/event-impl-parent-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ event-impl-parent --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/event-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/event-impl-parent/3.6.1/event-impl-parent-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/event-impl/target/event-impl-parent-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/event-impl-parent/3.6.1/event-impl-parent-3.6.1-sources.jar [INFO] [INFO] ----------------------< org.cytoscape:event-impl >---------------------- [INFO] Building Cytoscape Event Impl (event-impl) 3.6.1 [45/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ event-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ event-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 5 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/event-impl/impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ event-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ event-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ event-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ event-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ event-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ event-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ event-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/event-impl/impl/target/event-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ event-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@32bba8c7 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7b4dedae readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@25b910cf readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@29b66338 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3b5378a4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5df38db7 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ event-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ event-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ event-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/event-impl/impl/target/event-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/event-impl/3.6.1/event-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/event-impl/impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/event-impl/3.6.1/event-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/event-impl/impl/target/event-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/event-impl/3.6.1/event-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ event-impl --- [INFO] Installing org/cytoscape/event-impl/3.6.1/event-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ---------------------< org.cytoscape:filter-impl >---------------------- [INFO] Building Cytoscape Filters Impl (filter-impl) 3.6.1 [46/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ filter-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 11 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ filter-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 64 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/filter-impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/filter-impl/src/main/java/org/cytoscape/filter/internal/widgets/autocomplete/view/AutoCompleteDocument.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/filter-impl/src/main/java/org/cytoscape/filter/internal/widgets/autocomplete/view/AutoCompleteDocument.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ filter-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ filter-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ filter-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ filter-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ filter-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ filter-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ filter-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/filter-impl/target/filter-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ filter-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@297ee577 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7cef8861 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5d0296c0 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@455f125c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@410630ed readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5ec24d14 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ filter-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ filter-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ filter-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/filter-impl/target/filter-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/filter-impl/3.6.1/filter-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/filter-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/filter-impl/3.6.1/filter-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/filter-impl/target/filter-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/filter-impl/3.6.1/filter-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ filter-impl --- [INFO] Installing org/cytoscape/filter-impl/3.6.1/filter-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ---------------------< org.cytoscape:filter2-impl >--------------------- [INFO] Building Cytoscape Filters 2 Impl (filter2-impl) 3.6.1 [47/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ filter2-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/filter2-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ filter2-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 94 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/filter2-impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/filter2-impl/src/main/java/org/cytoscape/filter/internal/view/AbstractPanelController.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/filter2-impl/src/main/java/org/cytoscape/filter/internal/view/AbstractPanelController.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ filter2-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ filter2-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ filter2-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ filter2-impl --- [WARNING] Bundle org.cytoscape:filter2-impl:bundle:3.6.1 : Split package, multiple jars provide the same package:org/cytoscape/filter/internal Use Import/Export Package directive -split-package:=(merge-first|merge-last|error|first) to get rid of this warning Package found in [Jar:., Jar:filter-impl] Class path [Jar:., Jar:session-api, Jar:vizmap-api, Jar:property-api, Jar:viewmodel-api, Jar:model-api, Jar:work-api, Jar:app-api, Jar:core-task-api, Jar:io-api, Jar:presentation-api, Jar:group-api, Jar:layout-api, Jar:jobs-api, Jar:equations-api, Jar:webservice-api, Jar:datasource-api, Jar:application-api, Jar:command-executor-api, Jar:swing-application-api, Jar:work-swing-api, Jar:filter-api, Jar:event-api, Jar:swing-util-api, Jar:junit, Jar:hamcrest-core, Jar:mockito-all, Jar:model-impl, Jar:equations-impl, Jar:guava, Jar:jsr305, Jar:error_prone_annotations, Jar:j2objc-annotations, Jar:animal-sniffer-annotations, Jar:model-impl, Jar:event-api, Jar:event-impl, Jar:filter-impl, Jar:violinstrings, Jar:parallelcolt, Jar:pax-logging-api, Jar:org.osgi.core, Jar:service-api] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ filter2-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ filter2-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ filter2-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/filter2-impl/target/filter2-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ filter2-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@37abb5b9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7ef30f24 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@254f4819 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@535986af readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5234baae readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3764d0f5 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ filter2-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ filter2-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ filter2-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/filter2-impl/target/filter2-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/filter2-impl/3.6.1/filter2-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/filter2-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/filter2-impl/3.6.1/filter2-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/filter2-impl/target/filter2-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/filter2-impl/3.6.1/filter2-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ filter2-impl --- [INFO] Installing org/cytoscape/filter2-impl/3.6.1/filter2-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------------< org.cytoscape:io-impl-parent >-------------------- [INFO] Building Cytoscape IO Impl Parent (io-impl-parent) 3.6.1 [48/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ io-impl-parent >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ io-impl-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ io-impl-parent --- [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ io-impl-parent >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@524a38c5 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@60721e6f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@535ad1a9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1c985597 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@c4e5c08 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7f7deb56 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ io-impl-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ io-impl-parent --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/target/io-impl-parent-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ io-impl-parent --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-impl-parent/3.6.1/io-impl-parent-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/target/io-impl-parent-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-impl-parent/3.6.1/io-impl-parent-3.6.1-sources.jar [INFO] [INFO] -----------------------< org.cytoscape:io-impl >------------------------ [INFO] Building Cytoscape IO Impl (io-impl) 3.6.1 [49/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7220f54c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@703cb836 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@42bb2d22 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ io-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 4 resources [INFO] Copying 1 resource [INFO] Copying 1 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ io-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 212 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/java/org/cytoscape/io/internal/read/GenericReaderManager.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/java/org/cytoscape/io/internal/read/GenericReaderManager.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ io-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ io-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ io-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ io-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ io-impl >>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1daa4f97 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@70371927 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6ebffe9b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ io-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ io-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/io-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ io-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5b9e165c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@43357156 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@25d654ec readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@62ab6565 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3753120f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6f424cf7 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ io-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ io-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ io-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/io-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-impl/3.6.1/io-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-impl/3.6.1/io-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/io-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-impl/3.6.1/io-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ io-impl --- [INFO] Installing org/cytoscape/io-impl/3.6.1/io-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ---------------------< org.cytoscape:layout-impl >---------------------- [INFO] Building Cytoscape Layout Impl (layout-impl) 3.6.1 [50/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ layout-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ layout-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 7 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ layout-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ layout-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ layout-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ layout-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ layout-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ layout-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ layout-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-impl/target/layout-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ layout-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7dea9e6c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@14d413fe readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@be26eae readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@64f20765 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6a4b8c61 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5a3ea5bf readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ layout-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ layout-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ layout-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-impl/target/layout-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/layout-impl/3.6.1/layout-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/layout-impl/3.6.1/layout-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-impl/target/layout-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/layout-impl/3.6.1/layout-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ layout-impl --- [INFO] Installing org/cytoscape/layout-impl/3.6.1/layout-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -------------< org.cytoscape:ding-impl-performance-debug >-------------- [INFO] Building Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) 3.6.1 [51/117] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ ding-impl-performance-debug --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ ding-impl-performance-debug --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/performance-debug/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ ding-impl-performance-debug --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ ding-impl-performance-debug --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ ding-impl-performance-debug --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ ding-impl-performance-debug --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/performance-debug/target/ding-impl-performance-debug-3.6.1.jar [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ ding-impl-performance-debug >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ ding-impl-performance-debug <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ ding-impl-performance-debug --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/performance-debug/target/ding-impl-performance-debug-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ ding-impl-performance-debug >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@b83c735 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7f465764 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2ad09b25 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2594e8f2 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@780ca3f1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@19984e24 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ ding-impl-performance-debug <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ ding-impl-performance-debug --- [INFO] [INFO] --- maven-assembly-plugin:2.5.5:attached (make-assembly) @ ding-impl-performance-debug --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/performance-debug/target/ding-impl-performance-debug-3.6.1-jar-with-dependencies.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ ding-impl-performance-debug --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/performance-debug/target/ding-impl-performance-debug-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/ding-impl-performance-debug/3.6.1/ding-impl-performance-debug-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/performance-debug/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/ding-impl-performance-debug/3.6.1/ding-impl-performance-debug-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/performance-debug/target/ding-impl-performance-debug-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/ding-impl-performance-debug/3.6.1/ding-impl-performance-debug-3.6.1-sources.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/ding-impl/performance-debug/target/ding-impl-performance-debug-3.6.1-jar-with-dependencies.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/ding-impl-performance-debug/3.6.1/ding-impl-performance-debug-3.6.1-jar-with-dependencies.jar [INFO] [INFO] ---------------------< org.cytoscape:editor-impl >---------------------- [INFO] Building Cytoscape Editor Impl (editor-impl) 3.6.1 [52/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ editor-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ editor-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 27 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/editor-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ editor-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ editor-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ editor-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ editor-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ editor-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ editor-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ editor-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/editor-impl/target/editor-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ editor-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@22720d08 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@433a0be6 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1779dff1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@d7f6448 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4c27f41 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3a4cbb84 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ editor-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ editor-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ editor-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/editor-impl/target/editor-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/editor-impl/3.6.1/editor-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/editor-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/editor-impl/3.6.1/editor-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/editor-impl/target/editor-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/editor-impl/3.6.1/editor-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ editor-impl --- [INFO] Installing org/cytoscape/editor-impl/3.6.1/editor-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ---------------< org.cytoscape:equations-functions-impl >--------------- [INFO] Building Cytoscape Equation Functions Impl (equations-functions-impl) 3.6.1 [53/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ equations-functions-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/equations-functions-impl/src/main/resources [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/equations-functions-impl/src/integration/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ equations-functions-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 6 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/equations-functions-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ equations-functions-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ equations-functions-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ equations-functions-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ equations-functions-impl --- [WARNING] Bundle org.cytoscape:equations-functions-impl:bundle:3.6.1 : Split package, multiple jars provide the same package:org/cytoscape/equations/internal Use Import/Export Package directive -split-package:=(merge-first|merge-last|error|first) to get rid of this warning Package found in [Jar:., Jar:equations-impl] Class path [Jar:., Jar:model-api, Jar:equations-api, Jar:application-api, Jar:viewmodel-api, Jar:presentation-api, Jar:event-api, Jar:event-api, Jar:equations-impl, Jar:junit, Jar:hamcrest-core, Jar:mockito-all, Jar:pax-logging-api, Jar:org.osgi.core, Jar:service-api] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ equations-functions-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ equations-functions-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ equations-functions-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/equations-functions-impl/target/equations-functions-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ equations-functions-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4ba72395 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@ed8d14f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2da3f264 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@bedf24d readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@79b52368 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4f8595a9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ equations-functions-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ equations-functions-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ equations-functions-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/equations-functions-impl/target/equations-functions-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/equations-functions-impl/3.6.1/equations-functions-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/equations-functions-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/equations-functions-impl/3.6.1/equations-functions-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/equations-functions-impl/target/equations-functions-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/equations-functions-impl/3.6.1/equations-functions-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ equations-functions-impl --- [INFO] Installing org/cytoscape/equations-functions-impl/3.6.1/equations-functions-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ---------------------< org.cytoscape:graphml-impl >--------------------- [INFO] Building Cytoscape GraphML Impl (graphml-impl) 3.6.1 [54/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ graphml-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/graphml-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ graphml-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 9 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/graphml-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ graphml-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ graphml-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ graphml-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ graphml-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ graphml-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ graphml-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ graphml-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/graphml-impl/target/graphml-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ graphml-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@dfdb0e1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@16fe300d readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4dbff4b3 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@12982e9a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4fec730 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5f68ef09 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ graphml-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ graphml-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ graphml-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/graphml-impl/target/graphml-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/graphml-impl/3.6.1/graphml-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/graphml-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/graphml-impl/3.6.1/graphml-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/graphml-impl/target/graphml-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/graphml-impl/3.6.1/graphml-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ graphml-impl --- [INFO] Installing org/cytoscape/graphml-impl/3.6.1/graphml-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -----------------< org.cytoscape:io-impl-performance >------------------ [INFO] Building Cytoscape IO Impl Performance (io-impl-performance) 3.6.1 [55/117] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ io-impl-performance --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 4 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ io-impl-performance --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/performance/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/performance/src/main/java/org/cytoscape/io/read/sif/PerfTest.java: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/performance/src/main/java/org/cytoscape/io/read/sif/PerfTest.java uses unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/performance/src/main/java/org/cytoscape/io/read/sif/PerfTest.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ io-impl-performance --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ io-impl-performance --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ io-impl-performance --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ io-impl-performance --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/performance/target/io-impl-performance-3.6.1.jar [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ io-impl-performance >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ io-impl-performance <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ io-impl-performance --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/performance/target/io-impl-performance-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ io-impl-performance >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@58c40be readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@66168d29 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@16696fab readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7c40cf9a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3c4634d1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1cb1c1ee readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ io-impl-performance <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ io-impl-performance --- [INFO] [INFO] --- maven-assembly-plugin:2.5.5:attached (make-assembly) @ io-impl-performance --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/performance/target/io-impl-performance-3.6.1-jar-with-dependencies.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ io-impl-performance --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/performance/target/io-impl-performance-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-impl-performance/3.6.1/io-impl-performance-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/performance/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-impl-performance/3.6.1/io-impl-performance-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/performance/target/io-impl-performance-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-impl-performance/3.6.1/io-impl-performance-3.6.1-sources.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/performance/target/io-impl-performance-3.6.1-jar-with-dependencies.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/io-impl-performance/3.6.1/io-impl-performance-3.6.1-jar-with-dependencies.jar [INFO] [INFO] ----------------------< org.cytoscape:jobs-impl >----------------------- [INFO] Building Cytoscape Jobs Impl (jobs-impl) 3.6.1 [56/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ jobs-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/jobs-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ jobs-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 6 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/jobs-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ jobs-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ jobs-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ jobs-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ jobs-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ jobs-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ jobs-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ jobs-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/jobs-impl/target/jobs-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ jobs-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4c83e101 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5d97150f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@655330a7 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@b8cf649 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6edcf478 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5092d7f1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ jobs-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ jobs-impl --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ jobs-impl --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ jobs-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/jobs-impl/target/jobs-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/jobs-impl/3.6.1/jobs-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/jobs-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/jobs-impl/3.6.1/jobs-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/jobs-impl/target/jobs-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/jobs-impl/3.6.1/jobs-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ jobs-impl --- [INFO] Installing org/cytoscape/jobs-impl/3.6.1/jobs-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ----------------< org.cytoscape:layout-cytoscape-impl >----------------- [INFO] Building Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) 3.6.1 [57/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ layout-cytoscape-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-cytoscape-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ layout-cytoscape-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 90 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-cytoscape-impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-cytoscape-impl/src/main/java/org/ivis/layout/LEdge.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-cytoscape-impl/src/main/java/org/ivis/layout/LEdge.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ layout-cytoscape-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ layout-cytoscape-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ layout-cytoscape-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ layout-cytoscape-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ layout-cytoscape-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ layout-cytoscape-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ layout-cytoscape-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-cytoscape-impl/target/layout-cytoscape-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ layout-cytoscape-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3daa61b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@545b676b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@9376e71 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3fce6017 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7a781f60 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3d79b18b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ layout-cytoscape-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ layout-cytoscape-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ layout-cytoscape-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-cytoscape-impl/target/layout-cytoscape-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/layout-cytoscape-impl/3.6.1/layout-cytoscape-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-cytoscape-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/layout-cytoscape-impl/3.6.1/layout-cytoscape-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-cytoscape-impl/target/layout-cytoscape-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/layout-cytoscape-impl/3.6.1/layout-cytoscape-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ layout-cytoscape-impl --- [INFO] Installing org/cytoscape/layout-cytoscape-impl/3.6.1/layout-cytoscape-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ------------------< org.cytoscape:layout-jgraph-impl >------------------ [INFO] Building Cytoscape JGraph Layout Impl (layout-jgraph-impl) 3.6.1 [58/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ layout-jgraph-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-jgraph-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ layout-jgraph-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-jgraph-impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-jgraph-impl/src/main/java/csapps/layout/JGraphLayoutWrapperTask.java: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-jgraph-impl/src/main/java/csapps/layout/JGraphLayoutWrapperTask.java uses unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-jgraph-impl/src/main/java/csapps/layout/JGraphLayoutWrapperTask.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ layout-jgraph-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ layout-jgraph-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ layout-jgraph-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ layout-jgraph-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ layout-jgraph-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ layout-jgraph-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ layout-jgraph-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-jgraph-impl/target/layout-jgraph-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ layout-jgraph-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@9928b81 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4d00d4c1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@e1cf639 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4743f466 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@52de503 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5ff8faa1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ layout-jgraph-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ layout-jgraph-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ layout-jgraph-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-jgraph-impl/target/layout-jgraph-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/layout-jgraph-impl/3.6.1/layout-jgraph-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-jgraph-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/layout-jgraph-impl/3.6.1/layout-jgraph-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-jgraph-impl/target/layout-jgraph-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/layout-jgraph-impl/3.6.1/layout-jgraph-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ layout-jgraph-impl --- [INFO] Installing org/cytoscape/layout-jgraph-impl/3.6.1/layout-jgraph-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -----------------< org.cytoscape:layout-prefuse-impl >------------------ [INFO] Building Cytoscape Prefuse Layout Impl (layout-prefuse-impl) 3.6.1 [59/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ layout-prefuse-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-prefuse-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ layout-prefuse-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 19 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-prefuse-impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-prefuse-impl/src/main/java/prefuse/util/force/ForceSimulator.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-prefuse-impl/src/main/java/prefuse/util/force/ForceSimulator.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ layout-prefuse-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ layout-prefuse-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ layout-prefuse-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ layout-prefuse-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ layout-prefuse-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ layout-prefuse-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ layout-prefuse-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-prefuse-impl/target/layout-prefuse-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ layout-prefuse-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@658d087b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@48827539 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4f7a1e82 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@586728e4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@480ee4a5 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@383700da readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ layout-prefuse-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ layout-prefuse-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ layout-prefuse-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-prefuse-impl/target/layout-prefuse-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/layout-prefuse-impl/3.6.1/layout-prefuse-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-prefuse-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/layout-prefuse-impl/3.6.1/layout-prefuse-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/layout-prefuse-impl/target/layout-prefuse-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/layout-prefuse-impl/3.6.1/layout-prefuse-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ layout-prefuse-impl --- [INFO] Installing org/cytoscape/layout-prefuse-impl/3.6.1/layout-prefuse-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ---------------------< org.cytoscape:linkout-impl >--------------------- [INFO] Building Cytoscape Linkout Impl (linkout-impl) 3.6.1 [60/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ linkout-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ linkout-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 9 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/linkout-impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/linkout-impl/src/main/java/org/cytoscape/linkout/internal/CyActivator.java: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/linkout-impl/src/main/java/org/cytoscape/linkout/internal/CyActivator.java uses unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/linkout-impl/src/main/java/org/cytoscape/linkout/internal/CyActivator.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ linkout-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ linkout-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ linkout-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ linkout-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ linkout-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ linkout-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ linkout-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/linkout-impl/target/linkout-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ linkout-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6c162eee readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5cf907c3 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4d0471b4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@28ab9853 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@45e956d2 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@755ea7b4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ linkout-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ linkout-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ linkout-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/linkout-impl/target/linkout-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/linkout-impl/3.6.1/linkout-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/linkout-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/linkout-impl/3.6.1/linkout-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/linkout-impl/target/linkout-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/linkout-impl/3.6.1/linkout-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ linkout-impl --- [INFO] Installing org/cytoscape/linkout-impl/3.6.1/linkout-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------------< org.cytoscape:log-swing-impl >-------------------- [INFO] Building Cytoscape Log Swing Impl (log-swing-impl) 3.6.1 [61/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ log-swing-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 13 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ log-swing-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 10 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/log-swing-impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/log-swing-impl/src/main/java/org/cytoscape/log/internal/ConsoleDialog.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/log-swing-impl/src/main/java/org/cytoscape/log/internal/ConsoleDialog.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ log-swing-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ log-swing-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ log-swing-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ log-swing-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ log-swing-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ log-swing-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ log-swing-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/log-swing-impl/target/log-swing-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ log-swing-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6eef2c30 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@38f7869d readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5d8c29c3 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4bd33bf6 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@61bae42c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@75ab6e1f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ log-swing-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ log-swing-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ log-swing-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/log-swing-impl/target/log-swing-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/log-swing-impl/3.6.1/log-swing-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/log-swing-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/log-swing-impl/3.6.1/log-swing-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/log-swing-impl/target/log-swing-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/log-swing-impl/3.6.1/log-swing-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ log-swing-impl --- [INFO] Installing org/cytoscape/log-swing-impl/3.6.1/log-swing-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ------------------< org.cytoscape:manual-layout-impl >------------------ [INFO] Building Cytoscape Manual Layout Impl (manual-layout-impl) 3.6.1 [62/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ manual-layout-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 18 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ manual-layout-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 45 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/manual-layout-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ manual-layout-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ manual-layout-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ manual-layout-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ manual-layout-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ manual-layout-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ manual-layout-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ manual-layout-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/manual-layout-impl/target/manual-layout-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ manual-layout-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7f616c13 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@752c448e readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@79ac463f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@304697bd readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@703c79d4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3b319b88 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ manual-layout-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ manual-layout-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ manual-layout-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/manual-layout-impl/target/manual-layout-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/manual-layout-impl/3.6.1/manual-layout-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/manual-layout-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/manual-layout-impl/3.6.1/manual-layout-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/manual-layout-impl/target/manual-layout-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/manual-layout-impl/3.6.1/manual-layout-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ manual-layout-impl --- [INFO] Installing org/cytoscape/manual-layout-impl/3.6.1/manual-layout-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -------------< org.cytoscape:model-impl-performance-debug >------------- [INFO] Building Cytoscape Model Impl Performance Debug (model-impl-performance-debug) 3.6.1 [63/117] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ model-impl-performance-debug --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/performance-debug/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ model-impl-performance-debug --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/performance-debug/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ model-impl-performance-debug --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ model-impl-performance-debug --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ model-impl-performance-debug --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ model-impl-performance-debug --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/performance-debug/target/model-impl-performance-debug-3.6.1.jar [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ model-impl-performance-debug >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ model-impl-performance-debug <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ model-impl-performance-debug --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/performance-debug/target/model-impl-performance-debug-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ model-impl-performance-debug >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3093c619 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@46863e26 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3745cd96 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6e935ddc readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@724641fd readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@26611fa5 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ model-impl-performance-debug <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ model-impl-performance-debug --- [INFO] [INFO] --- maven-assembly-plugin:2.5.5:attached (make-assembly) @ model-impl-performance-debug --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/performance-debug/target/model-impl-performance-debug-3.6.1-jar-with-dependencies.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ model-impl-performance-debug --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/performance-debug/target/model-impl-performance-debug-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/model-impl-performance-debug/3.6.1/model-impl-performance-debug-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/performance-debug/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/model-impl-performance-debug/3.6.1/model-impl-performance-debug-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/performance-debug/target/model-impl-performance-debug-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/model-impl-performance-debug/3.6.1/model-impl-performance-debug-3.6.1-sources.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/performance-debug/target/model-impl-performance-debug-3.6.1-jar-with-dependencies.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/model-impl-performance-debug/3.6.1/model-impl-performance-debug-3.6.1-jar-with-dependencies.jar [INFO] [INFO] ----------< org.cytoscape:model-impl-table-performance-debug >---------- [INFO] Building Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) 3.6.1 [64/117] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ model-impl-table-performance-debug --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/table-performance-debug/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ model-impl-table-performance-debug --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/table-performance-debug/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/table-performance-debug/src/main/java/org/cytoscape/model/PerfTest.java: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/table-performance-debug/src/main/java/org/cytoscape/model/PerfTest.java uses unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/table-performance-debug/src/main/java/org/cytoscape/model/PerfTest.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ model-impl-table-performance-debug --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ model-impl-table-performance-debug --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ model-impl-table-performance-debug --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ model-impl-table-performance-debug --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/table-performance-debug/target/model-impl-table-performance-debug-3.6.1.jar [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ model-impl-table-performance-debug >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ model-impl-table-performance-debug <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ model-impl-table-performance-debug --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/table-performance-debug/target/model-impl-table-performance-debug-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ model-impl-table-performance-debug >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1b5f25a9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@33078eec readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7b594946 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3650240 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4b76a074 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@480189df readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ model-impl-table-performance-debug <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ model-impl-table-performance-debug --- [INFO] [INFO] --- maven-assembly-plugin:2.5.5:attached (make-assembly) @ model-impl-table-performance-debug --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/table-performance-debug/target/model-impl-table-performance-debug-3.6.1-jar-with-dependencies.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ model-impl-table-performance-debug --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/table-performance-debug/target/model-impl-table-performance-debug-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/model-impl-table-performance-debug/3.6.1/model-impl-table-performance-debug-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/table-performance-debug/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/model-impl-table-performance-debug/3.6.1/model-impl-table-performance-debug-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/table-performance-debug/target/model-impl-table-performance-debug-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/model-impl-table-performance-debug/3.6.1/model-impl-table-performance-debug-3.6.1-sources.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/model-impl/table-performance-debug/target/model-impl-table-performance-debug-3.6.1-jar-with-dependencies.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/model-impl-table-performance-debug/3.6.1/model-impl-table-performance-debug-3.6.1-jar-with-dependencies.jar [INFO] [INFO] -----------------------< org.cytoscape:app-impl >----------------------- [INFO] Building Cytoscape App Impl (app-impl) 3.6.1 [65/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ app-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] Copying 0 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ app-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 73 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/app-impl/target/classes [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/app-impl/src/main/java/org/cytoscape/app/internal/CyAppAdapterImpl.java:[136,37] org.cytoscape.view.vizmap.gui.VizMapGUI in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/app-impl/src/main/java/org/cytoscape/app/internal/ui/InstallAppsPanel.java:[526,66] LAST_DIRECTORY in org.cytoscape.util.swing.FileUtil has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/app-impl/src/main/java/org/cytoscape/app/internal/CyAppAdapterImpl.java:[273,17] org.cytoscape.view.vizmap.gui.VizMapGUI in org.cytoscape.view.vizmap.gui has been deprecated [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/app-impl/src/main/java/org/cytoscape/app/internal/ui/InstallAppsPanel.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/app-impl/src/main/java/org/cytoscape/app/internal/ui/InstallAppsPanel.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ app-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ app-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ app-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ app-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ app-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ app-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ app-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/app-impl/target/app-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ app-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4175a6aa readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@22265a25 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4e9a1da7 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6639d138 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5b66ad67 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@768eb0f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ app-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ app-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ app-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/app-impl/target/app-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/app-impl/3.6.1/app-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/app-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/app-impl/3.6.1/app-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/app-impl/target/app-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/app-impl/3.6.1/app-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ app-impl --- [INFO] Installing org/cytoscape/app-impl/3.6.1/app-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ------------------< org.cytoscape:presentation-impl >------------------- [INFO] Building Cytoscape Presentation Impl (presentation-impl) 3.6.1 [66/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ presentation-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/presentation-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ presentation-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/presentation-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ presentation-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ presentation-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ presentation-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ presentation-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ presentation-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ presentation-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ presentation-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/presentation-impl/target/presentation-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ presentation-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6cc8a2b9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@44de8289 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3f475cfb readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@288a20d4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@12bb8bb6 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@8c87d16 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ presentation-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ presentation-impl --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ presentation-impl --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ presentation-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/presentation-impl/target/presentation-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/presentation-impl/3.6.1/presentation-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/presentation-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/presentation-impl/3.6.1/presentation-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/presentation-impl/target/presentation-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/presentation-impl/3.6.1/presentation-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ presentation-impl --- [INFO] Installing org/cytoscape/presentation-impl/3.6.1/presentation-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------------< org.cytoscape:property-impl >--------------------- [INFO] Building Cytoscape Property Impl (property-impl) 3.6.1 [67/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ property-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ property-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/property-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ property-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ property-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ property-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ property-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ property-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ property-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ property-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/property-impl/target/property-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ property-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3d0e2cd8 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1c000c6b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6ccf7c62 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5ca193e2 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6d6fc0b9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@31166a68 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ property-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ property-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ property-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/property-impl/target/property-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/property-impl/3.6.1/property-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/property-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/property-impl/3.6.1/property-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/property-impl/target/property-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/property-impl/3.6.1/property-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ property-impl --- [INFO] Installing org/cytoscape/property-impl/3.6.1/property-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ---------------------< org.cytoscape:search-impl >---------------------- [INFO] Building Cytoscape Search Impl (search-impl) 3.6.1 [68/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ search-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ search-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 13 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/search-impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearchManager.java: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearchManager.java uses unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/search-impl/src/main/java/org/cytoscape/search/internal/EnhancedSearchManager.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ search-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ search-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ search-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ search-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ search-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ search-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ search-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/search-impl/target/search-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ search-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2ebfe30a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5c9dd26a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3eae9577 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@14407cf0 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5002c4aa readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3b3cea12 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ search-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ search-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ search-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/search-impl/target/search-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/search-impl/3.6.1/search-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/search-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/search-impl/3.6.1/search-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/search-impl/target/search-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/search-impl/3.6.1/search-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ search-impl --- [INFO] Installing org/cytoscape/search-impl/3.6.1/search-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ---------------------< org.cytoscape:session-impl >--------------------- [INFO] Building Cytoscape Session Impl (session-impl) 3.6.1 [69/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ session-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/session-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ session-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/session-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ session-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ session-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ session-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ session-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ session-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ session-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ session-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/session-impl/target/session-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ session-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@f8ec2ee readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@61baa9de readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5ef9b1ac readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3b40cc56 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7aee92c2 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@30cede2a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ session-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ session-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ session-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/session-impl/target/session-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/session-impl/3.6.1/session-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/session-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/session-impl/3.6.1/session-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/session-impl/target/session-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/session-impl/3.6.1/session-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ session-impl --- [INFO] Installing org/cytoscape/session-impl/3.6.1/session-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -------------------< org.cytoscape:swing-util-impl >-------------------- [INFO] Building Cytoscape Swing Utility Impl (swing-util-impl) 3.6.1 [70/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ swing-util-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ swing-util-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 5 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-util-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ swing-util-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ swing-util-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ swing-util-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ swing-util-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ swing-util-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ swing-util-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ swing-util-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-util-impl/target/swing-util-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ swing-util-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@616eb9c2 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7e01c971 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7269b5cd readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@24bb0081 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1ddc5dd1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@20a397f0 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ swing-util-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ swing-util-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ swing-util-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-util-impl/target/swing-util-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/swing-util-impl/3.6.1/swing-util-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-util-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/swing-util-impl/3.6.1/swing-util-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-util-impl/target/swing-util-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/swing-util-impl/3.6.1/swing-util-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ swing-util-impl --- [INFO] Installing org/cytoscape/swing-util-impl/3.6.1/swing-util-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ----------------< org.cytoscape:swing-application-impl >---------------- [INFO] Building Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [71/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@76c6a598 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@25ad367d readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ swing-application-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 13 resources [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/help [INFO] Copying 1 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ swing-application-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 113 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/java/org/cytoscape/internal/view/CyHelpBrokerImpl.java:[6,39] org.cytoscape.application.swing.CyHelpBroker in org.cytoscape.application.swing has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java:[35,39] org.cytoscape.application.swing.CyHelpBroker in org.cytoscape.application.swing has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java:[75,35] org.cytoscape.internal.view.CyHelpBrokerImpl in org.cytoscape.internal.view has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/java/org/cytoscape/internal/view/CyDesktopManager.java:[75,21] setBounds(org.cytoscape.view.model.CyNetworkView,java.awt.Rectangle) in org.cytoscape.application.swing.CyNetworkViewDesktopMgr has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/java/org/cytoscape/internal/view/CyDesktopManager.java:[58,26] getBounds(org.cytoscape.view.model.CyNetworkView) in org.cytoscape.application.swing.CyNetworkViewDesktopMgr has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/java/org/cytoscape/internal/view/CyDesktopManager.java:[53,26] getDesktopViewAreaSize() in org.cytoscape.application.swing.CyNetworkViewDesktopMgr has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java:[229,17] org.cytoscape.internal.view.CyHelpBrokerImpl in org.cytoscape.internal.view has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java:[229,53] org.cytoscape.internal.view.CyHelpBrokerImpl in org.cytoscape.internal.view has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/java/org/cytoscape/internal/CyActivator.java:[230,51] org.cytoscape.application.swing.CyHelpBroker in org.cytoscape.application.swing has been deprecated [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ swing-application-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ swing-application-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ swing-application-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ swing-application-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ swing-application-impl >>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@24810397 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@305ce9f0 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ swing-application-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ swing-application-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/swing-application-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ swing-application-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@25aea110 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6d620818 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@26e7956e readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@20d94a48 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@36248f89 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3fcda2fa readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ swing-application-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ swing-application-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ swing-application-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/swing-application-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/swing-application-impl/3.6.1/swing-application-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/swing-application-impl/3.6.1/swing-application-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/swing-application-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/swing-application-impl/3.6.1/swing-application-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ swing-application-impl --- [INFO] Installing org/cytoscape/swing-application-impl/3.6.1/swing-application-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ------------------< org.cytoscape:table-browser-impl >------------------ [INFO] Building Cytoscape Table Browser Impl (table-browser-impl) 3.6.1 [72/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ table-browser-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 25 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ table-browser-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 30 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-browser-impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/BrowserTable.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/BrowserTable.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ table-browser-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ table-browser-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ table-browser-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ table-browser-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ table-browser-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ table-browser-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ table-browser-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-browser-impl/target/table-browser-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ table-browser-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7bbd4c6b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@27b7511f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@24a0a368 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@38220ef1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5b2e3e89 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@75e4116b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ table-browser-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ table-browser-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ table-browser-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-browser-impl/target/table-browser-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/table-browser-impl/3.6.1/table-browser-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-browser-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/table-browser-impl/3.6.1/table-browser-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-browser-impl/target/table-browser-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/table-browser-impl/3.6.1/table-browser-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ table-browser-impl --- [INFO] Installing org/cytoscape/table-browser-impl/3.6.1/table-browser-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ------------------< org.cytoscape:table-import-impl >------------------- [INFO] Building Cytoscape Table Import Impl (table-import-impl) 3.6.1 [73/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ table-import-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 4 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ table-import-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 62 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-import-impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-import-impl/src/main/java/org/cytoscape/tableimport/internal/ui/OntologyPanelBuilder.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-import-impl/src/main/java/org/cytoscape/tableimport/internal/ui/OntologyPanelBuilder.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ table-import-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ table-import-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ table-import-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ table-import-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ table-import-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ table-import-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ table-import-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-import-impl/target/table-import-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ table-import-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6f47ba87 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@713ed11d readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5aef083a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@342ec880 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@35f69468 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6956a8fb readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ table-import-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ table-import-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ table-import-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-import-impl/target/table-import-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/table-import-impl/3.6.1/table-import-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-import-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/table-import-impl/3.6.1/table-import-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/table-import-impl/target/table-import-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/table-import-impl/3.6.1/table-import-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ table-import-impl --- [INFO] Installing org/cytoscape/table-import-impl/3.6.1/table-import-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -----------------< org.cytoscape:vizmap-gui-core-impl >----------------- [INFO] Building Cytoscape VizMap GUI Core Impl (vizmap-gui-core-impl) 3.6.1 [74/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ vizmap-gui-core-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-core-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ vizmap-gui-core-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-core-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ vizmap-gui-core-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ vizmap-gui-core-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ vizmap-gui-core-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ vizmap-gui-core-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ vizmap-gui-core-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ vizmap-gui-core-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ vizmap-gui-core-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-core-impl/target/vizmap-gui-core-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ vizmap-gui-core-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@69aecaed readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@20ff3bfe readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5da75f4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3e036e10 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3026cea6 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@26f5389a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ vizmap-gui-core-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ vizmap-gui-core-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ vizmap-gui-core-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-core-impl/target/vizmap-gui-core-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/vizmap-gui-core-impl/3.6.1/vizmap-gui-core-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-core-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/vizmap-gui-core-impl/3.6.1/vizmap-gui-core-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-core-impl/target/vizmap-gui-core-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/vizmap-gui-core-impl/3.6.1/vizmap-gui-core-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ vizmap-gui-core-impl --- [INFO] Installing org/cytoscape/vizmap-gui-core-impl/3.6.1/vizmap-gui-core-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -------------------< org.cytoscape:vizmap-gui-impl >-------------------- [INFO] Building Cytoscape VizMap GUI Impl (vizmap-gui-impl) 3.6.1 [75/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ vizmap-gui-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ vizmap-gui-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 119 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/target/classes [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/valueeditor/DiscreteValueEditor.java:[68,37] org.cytoscape.view.vizmap.gui.DefaultViewPanel in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMainPanel.java:[72,37] org.cytoscape.view.vizmap.gui.DefaultViewEditor in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMainPanel.java:[73,37] org.cytoscape.view.vizmap.gui.DefaultViewPanel in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMainPanel.java:[74,37] org.cytoscape.view.vizmap.gui.VizMapGUI in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/AbstractVizMapperAction.java:[37,37] org.cytoscape.view.vizmap.gui.DefaultViewEditor in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/AbstractVizMapperAction.java:[38,37] org.cytoscape.view.vizmap.gui.VizMapGUI in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualMappingsTaskFactory.java:[34,37] org.cytoscape.view.vizmap.gui.VizMapGUI in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/C2DMappingEditorPanel.java:[38,37] org.cytoscape.view.vizmap.gui.DefaultViewPanel in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/valueeditor/DiscreteValueEditor.java:[318,31] org.cytoscape.view.vizmap.gui.DefaultViewPanel in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/valueeditor/DiscreteValueEditor.java:[318,80] org.cytoscape.view.vizmap.gui.DefaultViewPanel in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/valueeditor/DiscreteValueEditor.java:[319,102] getRenderingEngine() in org.cytoscape.view.vizmap.gui.DefaultViewPanel has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMainPanel.java:[105,59] org.cytoscape.view.vizmap.gui.VizMapGUI in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMainPanel.java:[105,70] org.cytoscape.view.vizmap.gui.DefaultViewPanel in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMainPanel.java:[105,88] org.cytoscape.view.vizmap.gui.DefaultViewEditor in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VizMapperMainPanel.java:[198,43] getRenderingEngine() in org.cytoscape.view.vizmap.gui.DefaultViewPanel has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/AbstractVizMapperAction.java:[49,19] org.cytoscape.view.vizmap.gui.DefaultViewEditor in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/AbstractVizMapperAction.java:[67,55] org.cytoscape.view.vizmap.gui.DefaultViewEditor in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/AbstractVizMapperAction.java:[165,23] org.cytoscape.view.vizmap.gui.VizMapGUI in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/action/AbstractVizMapperAction.java:[165,56] org.cytoscape.view.vizmap.gui.VizMapGUI in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualMappingsTaskFactory.java:[54,23] org.cytoscape.view.vizmap.gui.VizMapGUI in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualMappingsTaskFactory.java:[54,56] org.cytoscape.view.vizmap.gui.VizMapGUI in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualMappingsTaskFactory.java:[71,23] org.cytoscape.view.vizmap.gui.VizMapGUI in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/task/RemoveVisualMappingsTaskFactory.java:[71,56] org.cytoscape.view.vizmap.gui.VizMapGUI in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/C2DMappingEditorPanel.java:[174,23] org.cytoscape.view.vizmap.gui.DefaultViewPanel in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/C2DMappingEditorPanel.java:[174,72] org.cytoscape.view.vizmap.gui.DefaultViewPanel in org.cytoscape.view.vizmap.gui has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/C2DMappingEditorPanel.java:[210,69] getRenderingEngine() in org.cytoscape.view.vizmap.gui.DefaultViewPanel has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/mappingeditor/C2DMappingEditorPanel.java:[249,45] getRenderingEngine() in org.cytoscape.view.vizmap.gui.DefaultViewPanel has been deprecated [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/NumberVisualPropertyEditor.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/editor/NumberVisualPropertyEditor.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ vizmap-gui-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ vizmap-gui-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ vizmap-gui-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ vizmap-gui-impl --- [WARNING] Bundle org.cytoscape:vizmap-gui-impl:bundle:3.6.1 : Unused Import-Package instructions: [org.cytoscape.view.vizmap.gui.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ vizmap-gui-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ vizmap-gui-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ vizmap-gui-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/target/vizmap-gui-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ vizmap-gui-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@610328db readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@553124db readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@55753c9c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4d38d62c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@705db18b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5114af21 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ vizmap-gui-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ vizmap-gui-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ vizmap-gui-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/target/vizmap-gui-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/vizmap-gui-impl/3.6.1/vizmap-gui-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/vizmap-gui-impl/3.6.1/vizmap-gui-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-gui-impl/target/vizmap-gui-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/vizmap-gui-impl/3.6.1/vizmap-gui-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ vizmap-gui-impl --- [INFO] Installing org/cytoscape/vizmap-gui-impl/3.6.1/vizmap-gui-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ------------------< org.cytoscape:vizmap-impl-parent >------------------ [INFO] Building Cytoscape VizMap Impl Parent (vizmap-impl-parent) 3.6.1 [76/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ vizmap-impl-parent >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ vizmap-impl-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ vizmap-impl-parent --- [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ vizmap-impl-parent >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@22c17a5c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3e8d9bb4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@318bdceb readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@180d61a7 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@64afd85e readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6ca7ecf6 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ vizmap-impl-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ vizmap-impl-parent --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-impl/target/vizmap-impl-parent-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ vizmap-impl-parent --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/vizmap-impl-parent/3.6.1/vizmap-impl-parent-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-impl/target/vizmap-impl-parent-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/vizmap-impl-parent/3.6.1/vizmap-impl-parent-3.6.1-sources.jar [INFO] [INFO] ---------------------< org.cytoscape:vizmap-impl >---------------------- [INFO] Building Cytoscape VizMap Impl (vizmap-impl) 3.6.1 [77/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ vizmap-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ vizmap-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 25 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-impl/impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/NumberTranslator.java: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/NumberTranslator.java uses unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-impl/impl/src/main/java/org/cytoscape/view/vizmap/internal/mappings/NumberTranslator.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ vizmap-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ vizmap-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ vizmap-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ vizmap-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ vizmap-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ vizmap-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ vizmap-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-impl/impl/target/vizmap-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ vizmap-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4af98d39 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@554ef20e readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1665173 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@47281fd0 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3e527806 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7671ab51 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ vizmap-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ vizmap-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ vizmap-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-impl/impl/target/vizmap-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/vizmap-impl/3.6.1/vizmap-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-impl/impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/vizmap-impl/3.6.1/vizmap-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/vizmap-impl/impl/target/vizmap-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/vizmap-impl/3.6.1/vizmap-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ vizmap-impl --- [INFO] Installing org/cytoscape/vizmap-impl/3.6.1/vizmap-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -------------------< org.cytoscape:webservice-impl >-------------------- [INFO] Building Cytoscape Webservice Impl (webservice-impl) 3.6.1 [78/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ webservice-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ webservice-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 10 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/webservice-impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/webservice-impl/src/main/java/org/cytoscape/webservice/internal/ui/WebServiceImportDialog.java: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/webservice-impl/src/main/java/org/cytoscape/webservice/internal/ui/WebServiceImportDialog.java uses unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/webservice-impl/src/main/java/org/cytoscape/webservice/internal/ui/WebServiceImportDialog.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ webservice-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ webservice-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ webservice-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ webservice-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ webservice-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ webservice-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ webservice-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/webservice-impl/target/webservice-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ webservice-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5aceb35e readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4046d1df readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@489fafdc readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@27aec22e readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@341f08cf readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7180c119 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ webservice-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ webservice-impl --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ webservice-impl --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ webservice-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/webservice-impl/target/webservice-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/webservice-impl/3.6.1/webservice-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/webservice-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/webservice-impl/3.6.1/webservice-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/webservice-impl/target/webservice-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/webservice-impl/3.6.1/webservice-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ webservice-impl --- [INFO] Installing org/cytoscape/webservice-impl/3.6.1/webservice-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ------------------< org.cytoscape:work-headless-impl >------------------ [INFO] Building org.cytoscape.work-headless-impl 3.6.1 [79/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ work-headless-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-headless-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ work-headless-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-headless-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ work-headless-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ work-headless-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ work-headless-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ work-headless-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ work-headless-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ work-headless-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ work-headless-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-headless-impl/target/work-headless-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ work-headless-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@733af0b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@640c1261 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6aafe275 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@73cfc5db readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5b4f47d1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@109712c6 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ work-headless-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ work-headless-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ work-headless-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-headless-impl/target/work-headless-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/work-headless-impl/3.6.1/work-headless-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-headless-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/work-headless-impl/3.6.1/work-headless-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-headless-impl/target/work-headless-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/work-headless-impl/3.6.1/work-headless-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ work-headless-impl --- [INFO] Installing org/cytoscape/work-headless-impl/3.6.1/work-headless-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ----------------------< org.cytoscape:work-impl >----------------------- [INFO] Building org.cytoscape.work-impl 3.6.1 [80/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ work-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ work-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 19 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ work-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ work-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ work-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ work-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ work-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ work-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ work-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-impl/target/work-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ work-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@25dd8f27 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@12a7bd5 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@58a90a8b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@62499987 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1983f897 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@a88133a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ work-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ work-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ work-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-impl/target/work-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/work-impl/3.6.1/work-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/work-impl/3.6.1/work-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-impl/target/work-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/work-impl/3.6.1/work-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ work-impl --- [INFO] Installing org/cytoscape/work-impl/3.6.1/work-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ----------------< org.cytoscape:work-swing-impl-parent >---------------- [INFO] Building Cytoscape Work Swing Impl Parent (work-swing-impl-parent) 3.6.1 [81/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ work-swing-impl-parent >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ work-swing-impl-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ work-swing-impl-parent --- [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ work-swing-impl-parent >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4670f52c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@50dd27b4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@564a7942 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@533fa4ee readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@44686298 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@eed6762 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ work-swing-impl-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ work-swing-impl-parent --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-swing-impl/target/work-swing-impl-parent-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ work-swing-impl-parent --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-swing-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/work-swing-impl-parent/3.6.1/work-swing-impl-parent-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-swing-impl/target/work-swing-impl-parent-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/work-swing-impl-parent/3.6.1/work-swing-impl-parent-3.6.1-sources.jar [INFO] [INFO] -------------------< org.cytoscape:work-swing-impl >-------------------- [INFO] Building Cytoscape Work Swing Impl (work-swing-impl) 3.6.1 [82/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ work-swing-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 6 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ work-swing-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 40 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-swing-impl/impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/CyActivator.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/CyActivator.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ work-swing-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ work-swing-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ work-swing-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ work-swing-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ work-swing-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ work-swing-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ work-swing-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-swing-impl/impl/target/work-swing-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ work-swing-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5c3f7aeb readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@708782c1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6abaefc9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@64c2a8a8 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@205fa941 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@26a5f5c3 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ work-swing-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ work-swing-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ work-swing-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-swing-impl/impl/target/work-swing-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/work-swing-impl/3.6.1/work-swing-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-swing-impl/impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/work-swing-impl/3.6.1/work-swing-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/work-swing-impl/impl/target/work-swing-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/work-swing-impl/3.6.1/work-swing-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ work-swing-impl --- [INFO] Installing org/cytoscape/work-swing-impl/3.6.1/work-swing-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -------------------< org.cytoscape:application-impl >------------------- [INFO] Building Cytoscape Application Impl (application-impl) 3.6.1 [83/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ application-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/application-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ application-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 6 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/application-impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/application-impl/src/main/java/org/cytoscape/application/internal/CyApplicationConfigurationImpl.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/application-impl/src/main/java/org/cytoscape/application/internal/CyApplicationConfigurationImpl.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ application-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ application-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ application-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ application-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ application-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ application-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ application-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/application-impl/target/application-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ application-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@dfbf2bd readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1caea233 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2078303 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@15bb012d readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@440cff3a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@16a3d61d readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ application-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ application-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ application-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/application-impl/target/application-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/application-impl/3.6.1/application-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/application-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/application-impl/3.6.1/application-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/application-impl/target/application-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/application-impl/3.6.1/application-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ application-impl --- [INFO] Installing org/cytoscape/application-impl/3.6.1/application-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -------------------< org.cytoscape:datasource-impl >-------------------- [INFO] Building Cytoscape Datasource Impl (datasource-impl) 3.6.1 [84/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ datasource-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/datasource-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ datasource-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/datasource-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ datasource-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ datasource-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ datasource-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ datasource-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ datasource-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ datasource-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ datasource-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/datasource-impl/target/datasource-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ datasource-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@61750560 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@329941b2 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1becab9d readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2398a82c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5b7d5468 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5d4c2350 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ datasource-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ datasource-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ datasource-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/datasource-impl/target/datasource-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/datasource-impl/3.6.1/datasource-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/datasource-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/datasource-impl/3.6.1/datasource-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/datasource-impl/target/datasource-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/datasource-impl/3.6.1/datasource-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ datasource-impl --- [INFO] Installing org/cytoscape/datasource-impl/3.6.1/datasource-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------------< org.cytoscape:support-parent >-------------------- [INFO] Building Cytoscape Support Parent Project POM 3.6.1 [85/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ support-parent >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ support-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ support-parent --- [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ support-parent --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/support-parent/3.6.1/support-parent-3.6.1.pom [INFO] [INFO] -------------------< org.cytoscape:launch-framework >------------------- [INFO] Building Cytoscape Launch Framework 3.6.1 [86/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ launch-framework >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ launch-framework <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ launch-framework --- [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ launch-framework --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/launch-framework/3.6.1/launch-framework-3.6.1.pom [INFO] [INFO] -----------------------< org.cytoscape:cmdline >------------------------ [INFO] Building CommandLine Provider 3.6.1 [87/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cmdline --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/cmdline/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ cmdline --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/cmdline/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cmdline --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ cmdline --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ cmdline --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ cmdline --- [WARNING] Bundle org.cytoscape:cmdline:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.cytoscape.cmdline.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ cmdline >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ cmdline <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ cmdline --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/cmdline/target/cmdline-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ cmdline --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/cmdline/target/cmdline-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/cmdline/3.6.1/cmdline-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/cmdline/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/cmdline/3.6.1/cmdline-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/cmdline/target/cmdline-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/cmdline/3.6.1/cmdline-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ cmdline --- [INFO] Installing org/cytoscape/cmdline/3.6.1/cmdline-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ---------------< org.cytoscape:gui-cmdline-parser-impl >---------------- [INFO] Building Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) 3.6.1 [88/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ gui-cmdline-parser-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/gui-cmdline-parser-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ gui-cmdline-parser-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/gui-cmdline-parser-impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/gui-cmdline-parser-impl/src/main/java/org/cytoscape/cmdline/gui/internal/CyActivator.java: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/gui-cmdline-parser-impl/src/main/java/org/cytoscape/cmdline/gui/internal/CyActivator.java uses unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/gui-cmdline-parser-impl/src/main/java/org/cytoscape/cmdline/gui/internal/CyActivator.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ gui-cmdline-parser-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ gui-cmdline-parser-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ gui-cmdline-parser-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ gui-cmdline-parser-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ gui-cmdline-parser-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ gui-cmdline-parser-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ gui-cmdline-parser-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/gui-cmdline-parser-impl/target/gui-cmdline-parser-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ gui-cmdline-parser-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5c62d53f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6831294a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@78eac1db readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@78b1d681 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@41def1f1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@25b9bbb4 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ gui-cmdline-parser-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ gui-cmdline-parser-impl --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ gui-cmdline-parser-impl --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ gui-cmdline-parser-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/gui-cmdline-parser-impl/target/gui-cmdline-parser-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/gui-cmdline-parser-impl/3.6.1/gui-cmdline-parser-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/gui-cmdline-parser-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/gui-cmdline-parser-impl/3.6.1/gui-cmdline-parser-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/gui-cmdline-parser-impl/target/gui-cmdline-parser-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/gui-cmdline-parser-impl/3.6.1/gui-cmdline-parser-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ gui-cmdline-parser-impl --- [INFO] Installing org/cytoscape/gui-cmdline-parser-impl/3.6.1/gui-cmdline-parser-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ------------------< org.cytoscape:edge-bundler-impl >------------------- [INFO] Building Cytoscape Edge Bundler Impl (edge-bundler-impl) 3.6.1 [89/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ edge-bundler-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/edge-bundler-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ edge-bundler-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/edge-bundler-impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/edge-bundler-impl/src/main/java/org/cytoscape/edge/bundler/internal/EdgeBundlerTask.java: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/edge-bundler-impl/src/main/java/org/cytoscape/edge/bundler/internal/EdgeBundlerTask.java uses unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/edge-bundler-impl/src/main/java/org/cytoscape/edge/bundler/internal/EdgeBundlerTask.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ edge-bundler-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ edge-bundler-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ edge-bundler-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ edge-bundler-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ edge-bundler-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ edge-bundler-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ edge-bundler-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/edge-bundler-impl/target/edge-bundler-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ edge-bundler-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4854da15 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@22c91218 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7ec01ecc readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@32c183d1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6572d63c readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2e696e3b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ edge-bundler-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ edge-bundler-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ edge-bundler-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/edge-bundler-impl/target/edge-bundler-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/edge-bundler-impl/3.6.1/edge-bundler-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/edge-bundler-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/edge-bundler-impl/3.6.1/edge-bundler-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/edge-bundler-impl/target/edge-bundler-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/edge-bundler-impl/3.6.1/edge-bundler-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ edge-bundler-impl --- [INFO] Installing org/cytoscape/edge-bundler-impl/3.6.1/edge-bundler-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------------< org.cytoscape:scripting-impl >-------------------- [INFO] Building Cytoscape Scripting Impl (scripting-impl) 3.6.1 [90/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ scripting-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ scripting-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 7 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/scripting-impl/target/classes [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/scripting-impl/src/main/java/org/cytoscape/scripting/internal/command/ExecuteScriptCommand.java:[7,38] org.apache.felix.gogo.commands.Argument in org.apache.felix.gogo.commands has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/scripting-impl/src/main/java/org/cytoscape/scripting/internal/command/ExecuteScriptCommand.java:[8,38] org.apache.felix.gogo.commands.Command in org.apache.felix.gogo.commands has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/scripting-impl/src/main/java/org/cytoscape/scripting/internal/command/ExecuteScriptCommand.java:[39,2] org.apache.felix.gogo.commands.Command in org.apache.felix.gogo.commands has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/scripting-impl/src/main/java/org/cytoscape/scripting/internal/command/ExecuteScriptCommand.java:[42,10] org.apache.felix.gogo.commands.Argument in org.apache.felix.gogo.commands has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/scripting-impl/src/main/java/org/cytoscape/scripting/internal/command/ExecuteScriptCommand.java:[45,10] org.apache.felix.gogo.commands.Argument in org.apache.felix.gogo.commands has been deprecated [WARNING] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/scripting-impl/src/main/java/org/cytoscape/scripting/internal/command/ExecuteScriptCommand.java:[48,10] org.apache.felix.gogo.commands.Argument in org.apache.felix.gogo.commands has been deprecated [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ scripting-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ scripting-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ scripting-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ scripting-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ scripting-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ scripting-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ scripting-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/scripting-impl/target/scripting-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ scripting-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@180dffd0 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@730e3cc9 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@15f6a68f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5c1bbb7b readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@6c4533a3 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2ff6c245 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ scripting-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ scripting-impl --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ scripting-impl --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ scripting-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/scripting-impl/target/scripting-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/scripting-impl/3.6.1/scripting-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/scripting-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/scripting-impl/3.6.1/scripting-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/scripting-impl/target/scripting-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/scripting-impl/3.6.1/scripting-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ scripting-impl --- [INFO] Installing org/cytoscape/scripting-impl/3.6.1/scripting-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------------< org.cytoscape:core-task-impl >-------------------- [INFO] Building Cytoscape Core Task Impl (core-task-impl) 3.6.1 [91/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ core-task-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 20 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ core-task-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 311 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/core-task-impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/core-task-impl/src/main/java/org/cytoscape/task/internal/group/GroupNodesTask.java: Some input files use unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/core-task-impl/src/main/java/org/cytoscape/task/internal/group/GroupNodesTask.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ core-task-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ core-task-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ core-task-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ core-task-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ core-task-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ core-task-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ core-task-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/core-task-impl/target/core-task-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ core-task-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@552f4e57 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2d11d172 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1a3ae1a1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@5f3c5842 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@c2ce7ce readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@592132bb readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ core-task-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ core-task-impl --- [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ core-task-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/core-task-impl/target/core-task-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/core-task-impl/3.6.1/core-task-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/core-task-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/core-task-impl/3.6.1/core-task-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/core-task-impl/target/core-task-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/core-task-impl/3.6.1/core-task-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ core-task-impl --- [INFO] Installing org/cytoscape/core-task-impl/3.6.1/core-task-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------< org.cytoscape:headless-application-impl >--------------- [INFO] Building Cytoscape Headless Application Impl (headless-application-impl) 3.6.1 [92/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ headless-application-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/headless-application-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ headless-application-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/headless-application-impl/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/headless-application-impl/src/main/java/org/cytoscape/internal/NetworkAddedSetCurrent.java: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/headless-application-impl/src/main/java/org/cytoscape/internal/NetworkAddedSetCurrent.java uses unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/headless-application-impl/src/main/java/org/cytoscape/internal/NetworkAddedSetCurrent.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ headless-application-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ headless-application-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ headless-application-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ headless-application-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ headless-application-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ headless-application-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ headless-application-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/headless-application-impl/target/headless-application-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ headless-application-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@449c00fe readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@27ac7b8a readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@4eb1c322 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@26fb64e1 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@7e804294 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3e1482ec readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ headless-application-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ headless-application-impl --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ headless-application-impl --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ headless-application-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/headless-application-impl/target/headless-application-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/headless-application-impl/3.6.1/headless-application-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/headless-application-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/headless-application-impl/3.6.1/headless-application-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/headless-application-impl/target/headless-application-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/headless-application-impl/3.6.1/headless-application-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ headless-application-impl --- [INFO] Installing org/cytoscape/headless-application-impl/3.6.1/headless-application-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------------< org.cytoscape:cy-commons-cli >-------------------- [INFO] Building org.cytoscape.cy-commons-cli 3.6.1 [93/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cy-commons-cli --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/cy-commons-cli/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ cy-commons-cli --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 20 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/cy-commons-cli/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cy-commons-cli --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ cy-commons-cli --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ cy-commons-cli --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ cy-commons-cli --- [WARNING] Bundle org.cytoscape:cy-commons-cli:bundle:3.6.1 : Unused Private-Package instructions, no such package(s) on the class path: [org.apache.commons.cli.internal.*] [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ cy-commons-cli >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ cy-commons-cli <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ cy-commons-cli --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/cy-commons-cli/target/cy-commons-cli-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ cy-commons-cli --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/cy-commons-cli/target/cy-commons-cli-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/cy-commons-cli/3.6.1/cy-commons-cli-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/cy-commons-cli/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/cy-commons-cli/3.6.1/cy-commons-cli-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/cy-commons-cli/target/cy-commons-cli-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/cy-commons-cli/3.6.1/cy-commons-cli-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ cy-commons-cli --- [INFO] Installing org/cytoscape/cy-commons-cli/3.6.1/cy-commons-cli-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -------------< org.cytoscape:headless-cmdline-parser-impl >------------- [INFO] Building Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) 3.6.1 [94/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ headless-cmdline-parser-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/headless-cmdline-parser-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ headless-cmdline-parser-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/headless-cmdline-parser-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ headless-cmdline-parser-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ headless-cmdline-parser-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ headless-cmdline-parser-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ headless-cmdline-parser-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ headless-cmdline-parser-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ headless-cmdline-parser-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ headless-cmdline-parser-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/headless-cmdline-parser-impl/target/headless-cmdline-parser-impl-3.6.1-sources.jar [INFO] [INFO] >>> maven-source-plugin:2.4:aggregate (aggregate-source) > generate-sources @ headless-cmdline-parser-impl >>> [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Property API (property-api) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (bookmarks) @ property-api --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] schemaIncludes:[bookmarks.xsd, xlinks-2001.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.property.bookmark [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks generatePackage=org.cytoscape.property.bookmark schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@2a47cc readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/xlinks-2001.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/src/main/xsd/bookmarks.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Bookmarks.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Category.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/DataSource.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/property-api/target/generated-sources/xjc/bookmarks/org/cytoscape/property/bookmark/Attribute.java]]. [INFO] Depends timestamp [1,515,095,338,000], produces timestamp [1,771,530,646,162]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape IO Impl (io-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (vizmap) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[vizmap.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.vizmap.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap generatePackage=org.cytoscape.io.internal.util.vizmap.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@14910c63 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/vizmap.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMappingPoint.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualProperty.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMappingEntry.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/PassthroughMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/DiscreteMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Vizmap.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/AttributeType.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/ContinuousMapping.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/VisualStyle.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Dependency.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/vizmap/org/cytoscape/io/internal/util/vizmap/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,283]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cysession) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cysession.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.session.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession generatePackage=org.cytoscape.io.internal.util.session.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@42372e3f readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cysession.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Parent.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugin.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/DesktopSize.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/HiddenEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Desktop.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Node.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkTree.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Child.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Edge.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Ontology.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/ViewableNodes.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/SelectedEdges.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Server.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Plugins.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/OntologyServer.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Cysession.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Panel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/NetworkFrames.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cysession/org/cytoscape/io/internal/util/session/model/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,660]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (cytables) @ io-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] schemaIncludes:[cytables.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.io.internal.util.cytables.model [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables generatePackage=org.cytoscape.io.internal.util.cytables.model schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@1374a6a2 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/src/main/resources/xsd/cytables.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumn.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/VirtualColumns.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/io-impl/impl/target/generated-sources/xjc/cytables/org/cytoscape/io/internal/util/cytables/model/CyTables.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,646,879]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Swing Application Impl (swing-application-impl) 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (sessionState) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[sessionState.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.sessionstate [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState generatePackage=org.cytoscape.internal.io.sessionstate schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@3ff2c56d readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/sessionState.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrame.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanel.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/Cytopanels.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/SessionState.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/sessionState/org/cytoscape/internal/io/sessionstate/NetworkFrames.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,047]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] --- maven-jaxb2-plugin:0.8.1:generate (networkList) @ swing-application-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/usr/local/openjdk8/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.2]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.8.1:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.8.1:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, org.apache.maven:maven-plugin-api:jar:2.0.6:compile, org.sonatype.plexus:plexus-build-api:jar:0.0.7:compile, org.apache.maven:maven-project:jar:2.0.6:compile, org.apache.maven:maven-settings:jar:2.0.6:compile, org.apache.maven:maven-profile:jar:2.0.6:compile, org.apache.maven:maven-model:jar:2.0.6:compile, org.apache.maven:maven-artifact-manager:jar:2.0.6:compile, org.apache.maven:maven-repository-metadata:jar:2.0.6:compile, org.apache.maven:maven-plugin-registry:jar:2.0.6:compile, org.apache.maven:maven-artifact:jar:2.0.6:compile, org.codehaus.plexus:plexus-container-default:jar:1.0-alpha-9-stable-1:compile, junit:junit:jar:4.8.1:compile, classworlds:classworlds:jar:1.1-alpha-2:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.8.1:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.5-b10:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.5-b10:compile] [INFO] specVersion:2.1 [INFO] encoding:UTF-8 [INFO] schemaLanguage:null [INFO] schemaDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] schemaIncludes:[networkList.xsd] [INFO] schemaExcludes:null [INFO] schemas:[] [INFO] bindingDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] bindings:[] [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:null [INFO] generatePackage:org.cytoscape.internal.io.networklist [INFO] generateDirectory:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:false [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode [INFO] episode:true [INFO] classpathElements:[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/classes] [INFO] plugins:null [INFO] episodes:null [INFO] useDependenciesAsEpisodes:false [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] [INFO] optionsConfiguration:OptionsConfiguration [specVersion=2.1 generateDirectory=/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList generatePackage=org.cytoscape.internal.io.networklist schemaLanguage=null schemas=[file:/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] bindings=[] plugins=[] catalogs=[] catalogResolver=org.jvnet.jaxb2.maven2.resolver.tools.MavenCatalogResolver@69e4651 readOnly=false extension=false strict=true verbose=true debugMode=false arguments=[-episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode]] Using java.util.ServiceLoader [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd] was changed since the last build. [INFO] File [/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml] was changed since the last build. [INFO] Checking up-to-date depends [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/src/main/resources/xsd/networkList.xsd, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/pom.xml]]. [INFO] Checking up-to-date produces [[/wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/META-INF/sun-jaxb.episode, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/ObjectFactory.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/NetworkList.java, /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/swing-application-impl/target/generated-sources/xjc/networkList/org/cytoscape/internal/io/networklist/Network.java]]. [INFO] Depends timestamp [1,522,256,111,000], produces timestamp [1,771,530,647,096]. [INFO] Skipped XJC execution. Generated sources were up-to-date. [INFO] [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] Forking Cytoscape Feature Repository 3.6.1 [INFO] >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:aggregate (aggregate-source) < generate-sources @ headless-cmdline-parser-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:aggregate (aggregate-source) @ headless-cmdline-parser-impl --- [INFO] [INFO] --- maven-jar-plugin:2.6:test-jar (default) @ headless-cmdline-parser-impl --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ headless-cmdline-parser-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/headless-cmdline-parser-impl/target/headless-cmdline-parser-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/headless-cmdline-parser-impl/3.6.1/headless-cmdline-parser-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/headless-cmdline-parser-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/headless-cmdline-parser-impl/3.6.1/headless-cmdline-parser-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/impl/headless-cmdline-parser-impl/target/headless-cmdline-parser-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/headless-cmdline-parser-impl/3.6.1/headless-cmdline-parser-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ headless-cmdline-parser-impl --- [INFO] Installing org/cytoscape/headless-cmdline-parser-impl/3.6.1/headless-cmdline-parser-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ------------------< org.cytoscape:archetypes-parent >------------------- [INFO] Building Cytoscape 3 App Archetypes Parent 3.6.1 [95/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ archetypes-parent >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ archetypes-parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ archetypes-parent --- [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ archetypes-parent --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/archetypes-parent/3.6.1/archetypes-parent-3.6.1.pom [INFO] [INFO] -------------< org.cytoscape.archetypes:api-provider-app >-------------- [INFO] Building Cytoscape 3 Archetype - Creates an App providing public API 3.6.1 [96/117] [INFO] --------------------------[ maven-archetype ]--------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ api-provider-app --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 5 resources [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ api-provider-app --- [INFO] Not copying test resources [INFO] [INFO] --- maven-archetype-plugin:2.2:jar (default-jar) @ api-provider-app --- [INFO] Building archetype jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/api-provider-app/target/api-provider-app-3.6.1 [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ api-provider-app >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ api-provider-app <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ api-provider-app --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/api-provider-app/target/api-provider-app-3.6.1-sources.jar [INFO] [INFO] --- maven-archetype-plugin:2.2:integration-test (default-integration-test) @ api-provider-app --- [WARNING] No Archetype IT projects: root 'projects' directory not found. [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ api-provider-app --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/api-provider-app/target/api-provider-app-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/archetypes/api-provider-app/3.6.1/api-provider-app-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/api-provider-app/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/archetypes/api-provider-app/3.6.1/api-provider-app-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/api-provider-app/target/api-provider-app-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/archetypes/api-provider-app/3.6.1/api-provider-app-3.6.1-sources.jar [INFO] [INFO] --- maven-archetype-plugin:2.2:update-local-catalog (default-update-local-catalog) @ api-provider-app --- [INFO] [INFO] -----------------< org.cytoscape.archetypes:task-app >------------------ [INFO] Building Cytoscape 3 Archetype - Creates an App with a Task 3.6.1 [97/117] [INFO] --------------------------[ maven-archetype ]--------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ task-app --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 5 resources [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ task-app --- [INFO] Not copying test resources [INFO] [INFO] --- maven-archetype-plugin:2.2:jar (default-jar) @ task-app --- [INFO] Building archetype jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/task-app/target/task-app-3.6.1 [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ task-app >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ task-app <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ task-app --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/task-app/target/task-app-3.6.1-sources.jar [INFO] [INFO] --- maven-archetype-plugin:2.2:integration-test (default-integration-test) @ task-app --- [WARNING] No Archetype IT projects: root 'projects' directory not found. [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ task-app --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/task-app/target/task-app-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/archetypes/task-app/3.6.1/task-app-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/task-app/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/archetypes/task-app/3.6.1/task-app-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/task-app/target/task-app-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/archetypes/task-app/3.6.1/task-app-3.6.1-sources.jar [INFO] [INFO] --- maven-archetype-plugin:2.2:update-local-catalog (default-update-local-catalog) @ task-app --- [INFO] [INFO] ---------------< org.cytoscape.archetypes:cyaction-app >---------------- [INFO] Building Cytoscape 3 Archetype - Creates a CyAction (menu item) for desktop application 3.6.1 [98/117] [INFO] --------------------------[ maven-archetype ]--------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cyaction-app --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 4 resources [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cyaction-app --- [INFO] Not copying test resources [INFO] [INFO] --- maven-archetype-plugin:2.2:jar (default-jar) @ cyaction-app --- [INFO] Building archetype jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/cyaction-app/target/cyaction-app-3.6.1 [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ cyaction-app >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ cyaction-app <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ cyaction-app --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/cyaction-app/target/cyaction-app-3.6.1-sources.jar [INFO] [INFO] --- maven-archetype-plugin:2.2:integration-test (default-integration-test) @ cyaction-app --- [WARNING] No Archetype IT projects: root 'projects' directory not found. [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ cyaction-app --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/cyaction-app/target/cyaction-app-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/archetypes/cyaction-app/3.6.1/cyaction-app-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/cyaction-app/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/archetypes/cyaction-app/3.6.1/cyaction-app-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/cyaction-app/target/cyaction-app-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/archetypes/cyaction-app/3.6.1/cyaction-app-3.6.1-sources.jar [INFO] [INFO] --- maven-archetype-plugin:2.2:update-local-catalog (default-update-local-catalog) @ cyaction-app --- [INFO] [INFO] -----------------< org.cytoscape.archetypes:meta-app >------------------ [INFO] Building Cytoscape 3 Archetype - Creates a Meta-App to install multiple related apps 3.6.1 [99/117] [INFO] --------------------------[ maven-archetype ]--------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ meta-app --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ meta-app --- [INFO] Not copying test resources [INFO] [INFO] --- maven-archetype-plugin:2.2:jar (default-jar) @ meta-app --- [INFO] Building archetype jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/meta-app/target/meta-app-3.6.1 [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ meta-app >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ meta-app <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ meta-app --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/meta-app/target/meta-app-3.6.1-sources.jar [INFO] [INFO] --- maven-archetype-plugin:2.2:integration-test (default-integration-test) @ meta-app --- [WARNING] No Archetype IT projects: root 'projects' directory not found. [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ meta-app --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/meta-app/target/meta-app-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/archetypes/meta-app/3.6.1/meta-app-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/meta-app/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/archetypes/meta-app/3.6.1/meta-app-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/archetypes/meta-app/target/meta-app-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/archetypes/meta-app/3.6.1/meta-app-3.6.1-sources.jar [INFO] [INFO] --- maven-archetype-plugin:2.2:update-local-catalog (default-update-local-catalog) @ meta-app --- [INFO] [INFO] ---------------< org.cytoscape:integration-test-support >--------------- [INFO] Building org.cytoscape.integration-test-support 3.6.1 [100/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ integration-test-support --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/integration-test-support/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ integration-test-support --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/integration-test-support/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ integration-test-support --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ integration-test-support --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ integration-test-support --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ integration-test-support --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ integration-test-support >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ integration-test-support <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ integration-test-support --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/integration-test-support/target/integration-test-support-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ integration-test-support --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/integration-test-support/target/integration-test-support-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/integration-test-support/3.6.1/integration-test-support-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/integration-test-support/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/integration-test-support/3.6.1/integration-test-support-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/integration-test-support/target/integration-test-support-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/integration-test-support/3.6.1/integration-test-support-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ integration-test-support --- [INFO] Installing org/cytoscape/integration-test-support/3.6.1/integration-test-support-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -----------------------< org.cytoscape:launcher >----------------------- [INFO] Building Launcher 3.6.1 [101/117] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ launcher --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ launcher --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/target/classes [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/src/main/java/org/cytoscape/launcher/internal/Launcher.java: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/src/main/java/org/cytoscape/launcher/internal/Launcher.java uses unchecked or unsafe operations. [INFO] /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/src/main/java/org/cytoscape/launcher/internal/Launcher.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ launcher --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ launcher --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ launcher --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ launcher --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/target/launcher-3.6.1.jar [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ launcher >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ launcher <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ launcher --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/target/launcher-3.6.1-sources.jar [INFO] [INFO] --- maven-assembly-plugin:2.2-beta-5:single (make-assembly) @ launcher --- [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] org/ already added, skipping [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/target/launcher-3.6.1-jar-with-dependencies.jar [INFO] META-INF/MANIFEST.MF already added, skipping [INFO] META-INF/ already added, skipping [INFO] META-INF/maven/ already added, skipping [INFO] org/ already added, skipping [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ launcher --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/target/launcher-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/launcher/3.6.1/launcher-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/launcher/3.6.1/launcher-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/target/launcher-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/launcher/3.6.1/launcher-3.6.1-sources.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/launcher/target/launcher-3.6.1-jar-with-dependencies.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/launcher/3.6.1/launcher-3.6.1-jar-with-dependencies.jar [INFO] [INFO] -----------------< org.cytoscape:startlevel-assembly >------------------ [INFO] Building StartLevel Assembly 3.6.1 [102/117] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ startlevel-assembly --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ startlevel-assembly --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ startlevel-assembly --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ startlevel-assembly --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ startlevel-assembly --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ startlevel-assembly --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/startlevel-assembly/target/startlevel-assembly-3.6.1.jar [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ startlevel-assembly >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ startlevel-assembly <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ startlevel-assembly --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/startlevel-assembly/target/startlevel-assembly-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ startlevel-assembly --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/startlevel-assembly/target/startlevel-assembly-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/startlevel-assembly/3.6.1/startlevel-assembly-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/startlevel-assembly/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/startlevel-assembly/3.6.1/startlevel-assembly-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/launch-framework/startlevel-assembly/target/startlevel-assembly-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/startlevel-assembly/3.6.1/startlevel-assembly-3.6.1-sources.jar [INFO] [INFO] ------------------< org.cytoscape:task-testing-impl >------------------- [INFO] Building Tasks for Testing 3.6.1 [103/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ task-testing-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ task-testing-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 18 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ task-testing-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ task-testing-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ task-testing-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ task-testing-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ task-testing-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ task-testing-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ task-testing-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/target/task-testing-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ task-testing-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/target/task-testing-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/task-testing-impl/3.6.1/task-testing-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/task-testing-impl/3.6.1/task-testing-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/target/task-testing-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/task-testing-impl/3.6.1/task-testing-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ task-testing-impl --- [INFO] Installing org/cytoscape/task-testing-impl/3.6.1/task-testing-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -----------------< org.cytoscape.distribution:parent >------------------ [INFO] Building Cytoscape Desktop Application Distribution 3.6.1 [104/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ parent >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ parent <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ parent --- [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ parent --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/parent/3.6.1/parent-3.6.1.pom [INFO] [INFO] ---------------< org.cytoscape.distribution:third-party >--------------- [INFO] Building Cytoscape Third-Party Dependencies (third-party) 3.6.1 [105/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ third-party --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/third-party/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ third-party --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ third-party --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ third-party --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ third-party --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ third-party --- [WARNING] Bundle org.cytoscape.distribution:third-party:bundle:3.6.1 : Invalid package name: 'org.jdesktop.swingx.autocomplete.doc-files' [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ third-party >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ third-party <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ third-party --- [INFO] No sources in project. Archive not created. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default) @ third-party --- [WARNING] Bundle org.cytoscape.distribution:third-party:bundle:3.6.1 : Invalid package name: 'org.jdesktop.swingx.autocomplete.doc-files' [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ third-party --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/third-party/target/third-party-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/third-party/3.6.1/third-party-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/third-party/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/third-party/3.6.1/third-party-3.6.1.pom [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ third-party --- [INFO] Installing org/cytoscape/distribution/third-party/3.6.1/third-party-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] -----------< org.cytoscape.gui-distribution:splash-launcher >----------- [INFO] Building SplashScreen Launcher 3.6.1 [106/117] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ splash-launcher --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ splash-launcher --- [INFO] No sources to compile [INFO] [INFO] --- batik-maven-plugin:1.0-beta-1:rasterize (default) @ splash-launcher --- [INFO] Rasterizing 1 image from SVG to image/png [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ splash-launcher --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ splash-launcher --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ splash-launcher --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ splash-launcher --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/splash-launcher/target/splash-launcher-3.6.1.jar [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ splash-launcher >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ splash-launcher <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ splash-launcher --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/splash-launcher/target/splash-launcher-3.6.1-sources.jar [INFO] [INFO] --- maven-assembly-plugin:2.5.5:single (splash-assembly) @ splash-launcher --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/splash-launcher/target/splash-launcher-3.6.1-jar-with-dependencies.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ splash-launcher --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/splash-launcher/target/splash-launcher-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/gui-distribution/splash-launcher/3.6.1/splash-launcher-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/splash-launcher/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/gui-distribution/splash-launcher/3.6.1/splash-launcher-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/splash-launcher/target/splash-launcher-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/gui-distribution/splash-launcher/3.6.1/splash-launcher-3.6.1-sources.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/splash-launcher/target/splash-launcher-3.6.1-jar-with-dependencies.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/gui-distribution/splash-launcher/3.6.1/splash-launcher-3.6.1-jar-with-dependencies.jar [INFO] [INFO] -------------< org.cytoscape.distribution:karaf-launcher >-------------- [INFO] Building Cytoscape Launcher 3.6.1 [107/117] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ karaf-launcher --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/launcher/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ karaf-launcher --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 3 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/launcher/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ karaf-launcher --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ karaf-launcher --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ karaf-launcher --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ karaf-launcher --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/launcher/target/karaf-launcher-3.6.1.jar [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ karaf-launcher >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ karaf-launcher <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ karaf-launcher --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/launcher/target/karaf-launcher-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ karaf-launcher --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/launcher/target/karaf-launcher-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/karaf-launcher/3.6.1/karaf-launcher-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/launcher/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/karaf-launcher/3.6.1/karaf-launcher-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/launcher/target/karaf-launcher-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/karaf-launcher/3.6.1/karaf-launcher-3.6.1-sources.jar [INFO] [INFO] -----------< org.cytoscape.distribution:splash-updater-impl >----------- [INFO] Building Splash Updater 3.6.1 [108/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ splash-updater-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/splash-updater-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ splash-updater-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/splash-updater-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ splash-updater-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ splash-updater-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ splash-updater-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ splash-updater-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ splash-updater-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ splash-updater-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ splash-updater-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/splash-updater-impl/target/splash-updater-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ splash-updater-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/splash-updater-impl/target/splash-updater-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/splash-updater-impl/3.6.1/splash-updater-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/splash-updater-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/splash-updater-impl/3.6.1/splash-updater-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/splash-updater-impl/target/splash-updater-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/splash-updater-impl/3.6.1/splash-updater-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ splash-updater-impl --- [INFO] Installing org/cytoscape/distribution/splash-updater-impl/3.6.1/splash-updater-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------------< org.cytoscape.distribution:cmdline-impl >--------------- [INFO] Building Cytoscape Command Line Provider Implementation 3.6.1 [109/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cmdline-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/cmdline-impl/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ cmdline-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/cmdline-impl/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cmdline-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ cmdline-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ cmdline-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ cmdline-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ cmdline-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ cmdline-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ cmdline-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/cmdline-impl/target/cmdline-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ cmdline-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/cmdline-impl/target/cmdline-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/cmdline-impl/3.6.1/cmdline-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/cmdline-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/cmdline-impl/3.6.1/cmdline-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/cmdline-impl/target/cmdline-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/cmdline-impl/3.6.1/cmdline-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ cmdline-impl --- [INFO] Installing org/cytoscape/distribution/cmdline-impl/3.6.1/cmdline-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ------------< org.cytoscape.distribution:diagnostics-impl >------------- [INFO] Building Cytoscape Diagnostics 3.6.1 [110/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ diagnostics-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/diagnostics/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ diagnostics-impl --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 15 source files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/diagnostics/target/classes [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ diagnostics-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ diagnostics-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ diagnostics-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ diagnostics-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ diagnostics-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ diagnostics-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ diagnostics-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/diagnostics/target/diagnostics-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ diagnostics-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/diagnostics/target/diagnostics-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/diagnostics-impl/3.6.1/diagnostics-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/diagnostics/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/diagnostics-impl/3.6.1/diagnostics-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/diagnostics/target/diagnostics-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/diagnostics-impl/3.6.1/diagnostics-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ diagnostics-impl --- [INFO] Installing org/cytoscape/distribution/diagnostics-impl/3.6.1/diagnostics-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ----------------< org.cytoscape.distribution:branding >----------------- [INFO] Building Cytoscape Branding 3.6.1 [111/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ branding --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/branding/target/dependencies/branding [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ branding --- [INFO] No sources to compile [INFO] [INFO] --- maven-replacer-plugin:1.3.9:replace (preprocess-logo) @ branding --- [INFO] Replacement run on 1 file. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ branding --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ branding --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ branding --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-replacer-plugin:1.3.9:replace (replace-logo) @ branding --- [INFO] Replacement run on 1 file. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ branding --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ branding >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ branding <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ branding --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/branding/target/branding-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ branding --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/branding/target/branding-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/branding/3.6.1/branding-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/branding/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/branding/3.6.1/branding-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/branding/target/branding-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/branding/3.6.1/branding-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ branding --- [INFO] Installing org/cytoscape/distribution/branding/3.6.1/branding-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] --------< org.cytoscape.distribution:application-metadata-impl >-------- [INFO] Building Cytoscape Application Implementation Metadata 3.6.1 [112/117] [INFO] -------------------------------[ bundle ]------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ application-metadata-impl --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ application-metadata-impl --- [INFO] No sources to compile [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ application-metadata-impl --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ application-metadata-impl --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ application-metadata-impl --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ application-metadata-impl --- [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ application-metadata-impl >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ application-metadata-impl <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ application-metadata-impl --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/application-metadata-impl/target/application-metadata-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-install-plugin:2.5.2:install (default-install) @ application-metadata-impl --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/application-metadata-impl/target/application-metadata-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/application-metadata-impl/3.6.1/application-metadata-impl-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/application-metadata-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/application-metadata-impl/3.6.1/application-metadata-impl-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/application-metadata-impl/target/application-metadata-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/application-metadata-impl/3.6.1/application-metadata-impl-3.6.1-sources.jar [INFO] [INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ application-metadata-impl --- [INFO] Installing org/cytoscape/distribution/application-metadata-impl/3.6.1/application-metadata-impl-3.6.1.jar [INFO] Writing OBR metadata [INFO] [INFO] ------------< org.cytoscape.distribution:integration-test >------------- [INFO] Building Cytoscape GUI-Distribution Integration Test (integration-test) 3.6.1 [113/117] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- depends-maven-plugin:1.2:generate-depends-file (generate-depends-file) @ integration-test --- [INFO] Created: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/classes/META-INF/maven/dependencies.properties [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ integration-test --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ integration-test --- [INFO] No sources to compile [INFO] [INFO] --- maven-dependency-plugin:2.10:copy (copy-dependencies) @ integration-test --- [INFO] Configured Artifact: org.cytoscape:app-impl:3.6.1:jar [INFO] Copying app-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/dependencies/app-impl-3.6.1.jar [INFO] [INFO] --- maven-dependency-plugin:2.10:copy-dependencies (copy-dependencies) @ integration-test --- [INFO] Copying session-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/session-api-3.6.1.jar [INFO] Copying jobs-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/jobs-api-3.6.1.jar [INFO] Copying model-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/model-impl-3.6.1.jar [INFO] Copying mockito-all-1.9.5.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/mockito-all-1.9.5.jar [INFO] Copying pax-exam-container-karaf-3.5.0.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/pax-exam-container-karaf-3.5.0.jar [INFO] Copying vizmap-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/vizmap-impl-3.6.1.jar [INFO] Copying junit-4.11.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/junit-4.11.jar [INFO] Copying application-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/application-impl-3.6.1.jar [INFO] Copying work-swing-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/work-swing-impl-3.6.1.jar [INFO] Copying application-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/application-api-3.6.1.jar [INFO] Copying equations-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/equations-impl-3.6.1.jar [INFO] Copying presentation-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/presentation-impl-3.6.1.jar [INFO] Copying logback-classic-0.9.29.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/logback-classic-0.9.29.jar [INFO] Copying layout-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/layout-impl-3.6.1.jar [INFO] Copying org.ops4j.pax.tipi.junit-4.11.0.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/org.ops4j.pax.tipi.junit-4.11.0.1.jar [INFO] Copying pax-url-aether-2.0.0.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/pax-url-aether-2.0.0.jar [INFO] Copying ops4j-base-exec-1.4.0.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/ops4j-base-exec-1.4.0.jar [INFO] Copying group-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/group-impl-3.6.1.jar [INFO] Copying pax-exam-extender-service-3.5.0.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/pax-exam-extender-service-3.5.0.jar [INFO] Copying viewmodel-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/viewmodel-impl-3.6.1.jar [INFO] Copying javax.inject-1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/javax.inject-1.jar [INFO] Copying property-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/property-api-3.6.1.jar [INFO] Copying presentation-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/presentation-api-3.6.1.jar [INFO] Copying model-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/model-api-3.6.1.jar [INFO] Copying event-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/event-impl-3.6.1.jar [INFO] Copying work-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/work-api-3.6.1.jar [INFO] Copying ding-presentation-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/ding-presentation-impl-3.6.1.jar [INFO] Copying core-task-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/core-task-impl-3.6.1.jar [INFO] Copying vizmap-gui-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/vizmap-gui-impl-3.6.1.jar [INFO] Copying datasource-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/datasource-impl-3.6.1.jar [INFO] Copying work-headless-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/work-headless-impl-3.6.1.jar [INFO] Copying logback-core-0.9.29.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/logback-core-0.9.29.jar [INFO] Copying pax-exam-3.5.0.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/pax-exam-3.5.0.jar [INFO] Copying io-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/io-impl-3.6.1.jar [INFO] Copying work-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/work-impl-3.6.1.jar [INFO] Copying pax-exam-invoker-junit-3.5.0.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/pax-exam-invoker-junit-3.5.0.jar [INFO] Copying session-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/session-impl-3.6.1.jar [INFO] Copying group-api-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/group-api-3.6.1.jar [INFO] Copying pax-exam-junit4-3.5.0.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/pax-exam-junit4-3.5.0.jar [INFO] Copying apache-karaf-3.0.3.zip to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/apache-karaf-3.0.3.zip [INFO] Copying session-api-3.6.1-tests.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/session-api-3.6.1-tests.jar [INFO] Copying property-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/property-impl-3.6.1.jar [INFO] Copying pax-exam-link-mvn-3.5.0.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/bundles/pax-exam-link-mvn-3.5.0.jar [INFO] [INFO] --- maven-dependency-plugin:2.10:unpack (unpack-api-docs) @ integration-test --- [INFO] Configured Artifact: org.cytoscape:swing-app-api:3.6.1:javadoc [INFO] Unpacking /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/swing-app-api-3.6.1-javadoc.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/dependencies with includes "package-list" and excludes "" [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ integration-test --- [INFO] Not copying test resources [INFO] [INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ integration-test --- [INFO] Not compiling test sources [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ integration-test --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ integration-test --- [INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/integration-test-3.6.1.jar [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ integration-test >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ integration-test <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ integration-test --- [INFO] No sources in project. Archive not created. [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ integration-test --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/target/integration-test-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/integration-test/3.6.1/integration-test-3.6.1.jar [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/integration-test/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/integration-test/3.6.1/integration-test-3.6.1.pom [INFO] [INFO] ----------------< org.cytoscape.distribution:features >----------------- [INFO] Building Cytoscape Feature Repository 3.6.1 [114/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ features >>> [INFO] [INFO] --- maven-resources-plugin:2.6:copy-resources (copy-resources) @ features --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ features <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ features --- [INFO] [INFO] --- build-helper-maven-plugin:1.7:attach-artifact (attach-artifacts) @ features --- [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ features --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/features/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/features/3.6.1/features-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/features/target/features.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/features/3.6.1/features-3.6.1-features.xml [INFO] [INFO] ----------------< org.cytoscape.distribution:cytoscape >---------------- [INFO] Building Cytoscape Karaf Distribution 3.6.1 [115/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- xml-maven-plugin:1.0:transform (generate-descriptors) @ cytoscape --- [INFO] Transforming file: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/src/main/descriptors/config-windows.xml [INFO] Transforming file: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/src/main/descriptors/config-dev.xml [INFO] Transforming file: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/src/main/descriptors/config-unix.xml [INFO] Transformed 3 file(s). [INFO] [INFO] --- maven-resources-plugin:2.6:resources (filter) @ cytoscape --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] Copying 30 resources [INFO] [INFO] >>> karaf-maven-plugin:3.0.3:features-add-to-repository (add-features-to-repo) > compile @ cytoscape >>> [INFO] [INFO] --- xml-maven-plugin:1.0:transform (generate-descriptors) @ cytoscape --- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (filter) @ cytoscape --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] Copying 30 resources [INFO] [INFO] --- maven-dependency-plugin:2.10:copy (copy-dependencies) @ cytoscape --- [INFO] Configured Artifact: org.cytoscape.distribution:branding:3.6.1:jar [INFO] Configured Artifact: org.cytoscape.distribution:karaf-launcher:3.6.1:jar [INFO] Copying branding-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/branding/branding-3.6.1.jar [INFO] Copying karaf-launcher-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/launcher/karaf-launcher-3.6.1.jar [INFO] [INFO] --- maven-dependency-plugin:2.10:copy-dependencies (copy-dependencies) @ cytoscape --- [INFO] Copying apache-karaf-3.0.3.tar.gz to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/bundles/apache-karaf-3.0.3.tar.gz [INFO] Copying apache-karaf-3.0.3.zip to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/bundles/apache-karaf-3.0.3.zip [INFO] Copying standard-3.0.3-features.xml to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/bundles/standard-3.0.3-features.xml [INFO] [INFO] --- maven-dependency-plugin:2.10:unpack (unpack-dependencies) @ cytoscape --- [INFO] Configured Artifact: org.apache.karaf:apache-karaf:?:tar.gz [INFO] Configured Artifact: org.cytoscape.gui-distribution:splash-launcher:3.6.1:jar [INFO] Unpacking /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/apache/karaf/apache-karaf/3.0.3/apache-karaf-3.0.3.tar.gz to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies with includes "" and excludes "" [INFO] Expanding: /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/apache/karaf/apache-karaf/3.0.3/apache-karaf-3.0.3.tar.gz into /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies [INFO] Unpacking /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/splash-launcher/target/splash-launcher-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/splash-launcher with includes "" and excludes "" [INFO] [INFO] --- maven-dependency-plugin:2.10:copy (copy) @ cytoscape --- [INFO] Configured Artifact: org.cytoscape:core-apps-meta:3.6.0:jar [INFO] Configured Artifact: org.cytoscape:biopax:3.3.2:jar [INFO] Configured Artifact: org.cytoscape:command-dialog:3.6.1:jar [INFO] Configured Artifact: org.cytoscape:json:3.6.1:jar [INFO] Configured Artifact: org.cytoscape:idmapper:3.6.1:jar [INFO] Configured Artifact: org.cytoscape:network-analyzer:3.3.2:jar [INFO] Configured Artifact: org.cytoscape:network-merge:3.3.4:jar [INFO] Configured Artifact: org.cytoscape:psi-mi:3.3.2:jar [INFO] Configured Artifact: org.cytoscape:sbml:3.3.3:jar [INFO] Configured Artifact: org.cytoscape:webservice-biomart-client:3.3.2:jar [INFO] Configured Artifact: org.cytoscape:webservice-psicquic-client:3.4.0:jar [INFO] Configured Artifact: org.cytoscape:cy-rest:3.7.0:jar [INFO] Configured Artifact: org.cytoscape:opencl-cycl:3.5.0:jar [INFO] Configured Artifact: org.cytoscape:opencl-layout:3.5.0:jar [INFO] Configured Artifact: org.cytoscape:welcome:3.5.2:jar [INFO] Configured Artifact: org.cytoscape.diffusion:diffusion:1.5.2:jar [INFO] Configured Artifact: org.cytoscape.copycatLayout:copycatLayout:1.2.3:jar [INFO] Configured Artifact: edu.ucsf.rbvi:cyBrowser:1.0.0:jar [INFO] Configured Artifact: org.cytoscape:cx-support:2.2.2:jar [INFO] Configured Artifact: org.cytoscape:cy-ndex-2:2.2.2:jar [INFO] Copying core-apps-meta-3.6.0.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/core-apps-meta-3.6.0.jar [INFO] Copying biopax-3.3.2.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/biopax-3.3.2.jar [INFO] Copying command-dialog-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/command-dialog-3.6.1.jar [INFO] Copying json-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/json-3.6.1.jar [INFO] Copying idmapper-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/idmapper-3.6.1.jar [INFO] Copying network-analyzer-3.3.2.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/network-analyzer-3.3.2.jar [INFO] Copying network-merge-3.3.4.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/network-merge-3.3.4.jar [INFO] Copying psi-mi-3.3.2.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/psi-mi-3.3.2.jar [INFO] Copying sbml-3.3.3.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/sbml-3.3.3.jar [INFO] Copying webservice-biomart-client-3.3.2.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/webservice-biomart-client-3.3.2.jar [INFO] Copying webservice-psicquic-client-3.4.0.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/webservice-psicquic-client-3.4.0.jar [INFO] Copying cy-rest-3.7.0.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/cy-rest-3.7.0.jar [INFO] Copying opencl-cycl-3.5.0.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/opencl-cycl-3.5.0.jar [INFO] Copying opencl-layout-3.5.0.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/opencl-layout-3.5.0.jar [INFO] Copying welcome-3.5.2.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/welcome-3.5.2.jar [INFO] Copying diffusion-1.5.2.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/diffusion-1.5.2.jar [INFO] Copying copycatLayout-1.2.3.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/copycatLayout-1.2.3.jar [INFO] Copying cyBrowser-1.0.0.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/cyBrowser-1.0.0.jar [INFO] Copying cx-support-2.2.2.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/cx-support-2.2.2.jar [INFO] Copying cy-ndex-2-2.2.2.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps/cy-ndex-2-2.2.2.jar [INFO] [INFO] --- maven-assembly-plugin:2.5.5:single (directory) @ cytoscape --- [INFO] Reading assembly descriptor: target/generated-resources/xml/xslt/config-dev.xml [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible / [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /apps [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/etc/ [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/system [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData [INFO] Copying files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape [WARNING] Assembly file: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape is not a regular file (it may be a directory). It cannot be attached to the project build for installation or deployment. [INFO] [INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-main-unix) @ cytoscape --- [INFO] Replacement run on 1 file. [INFO] [INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-main-windows) @ cytoscape --- [INFO] Replacement run on 1 file. [INFO] [INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-wrap-deployer-windows) @ cytoscape --- [INFO] Replacement run on 1 file. [INFO] [INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-disable-jmx) @ cytoscape --- [INFO] Replacement run on 1 file. [INFO] [INFO] <<< karaf-maven-plugin:3.0.3:features-add-to-repository (add-features-to-repo) < compile @ cytoscape <<< [INFO] [INFO] [INFO] --- karaf-maven-plugin:3.0.3:features-add-to-repository (add-features-to-repo) @ cytoscape --- [INFO] Base repo: file:///wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/ [INFO] Copying artifact: org.cytoscape.distribution:features:xml:features:3.6.1 [INFO] Copying artifact: org.cytoscape.distribution:diagnostics-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape.distribution:splash-updater-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape.distribution:third-party:jar:3.6.1 [INFO] Copying artifact: org.apache.servicemix.bundles:org.apache.servicemix.bundles.xmlbeans:jar:2.4.0_5 [INFO] Copying artifact: commons-io:commons-io:jar:2.1 [INFO] Copying artifact: cytoscape-temp:uk.ac.ebi.enfin.mi.cluster.micluster:jar:1.6 [INFO] Copying artifact: org.apache.servicemix.specs:org.apache.servicemix.specs.jaxb-api-2.1:jar:1.2.0 [INFO] Copying artifact: org.apache.servicemix.bundles:org.apache.servicemix.bundles.jaxb-impl:jar:2.1.6_1 [INFO] Copying artifact: javax.activation:com.springsource.javax.activation:jar:1.1.1 [INFO] Copying artifact: javax.xml.stream:com.springsource.javax.xml.stream:jar:1.0.1 [INFO] Copying artifact: javax.ws.rs:javax.ws.rs-api:jar:2.0 [INFO] Copying artifact: org.cytoscape:cmdline:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:api-bundle:jar:3.6.1 [INFO] Copying artifact: org.cytoscape.distribution:cmdline-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:property-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:event-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:datasource-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:equations-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape.distribution:application-metadata-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:application-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:swing-util-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:model-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:work-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:work-swing-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:work-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:presentation-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:viewmodel-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:vizmap-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:layout-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:group-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:session-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:vizmap-gui-core-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:ding-presentation-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:io-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:core-task-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:command-executor-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:swing-application-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:jobs-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:search-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:table-browser-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:vizmap-gui-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:manual-layout-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:layout-cytoscape-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:webservice-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:editor-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:layout-prefuse-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:linkout-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:table-import-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:filter2-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:graphml-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:edge-bundler-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:app-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:scripting-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:gui-cmdline-parser-impl:jar:3.6.1 [INFO] Copying artifact: org.cytoscape:equations-functions-impl:jar:3.6.1 [INFO] [INFO] >>> karaf-maven-plugin:3.0.3:features-add-to-repository (add-features-to-repo-dev) > compile @ cytoscape >>> [INFO] [INFO] --- xml-maven-plugin:1.0:transform (generate-descriptors) @ cytoscape --- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (filter) @ cytoscape --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] Copying 30 resources [INFO] [INFO] --- maven-dependency-plugin:2.10:copy (copy-dependencies) @ cytoscape --- [INFO] Configured Artifact: org.cytoscape.distribution:branding:3.6.1:jar [INFO] Configured Artifact: org.cytoscape.distribution:karaf-launcher:3.6.1:jar [INFO] org.cytoscape.distribution:branding:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/branding [INFO] org.cytoscape.distribution:karaf-launcher:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/launcher [INFO] [INFO] --- maven-dependency-plugin:2.10:copy-dependencies (copy-dependencies) @ cytoscape --- [INFO] org.apache.karaf:apache-karaf:tar.gz:3.0.3 already exists in destination. [INFO] org.apache.karaf:apache-karaf:zip:3.0.3 already exists in destination. [INFO] org.apache.karaf.features:standard:xml:features:3.0.3 already exists in destination. [INFO] [INFO] --- maven-dependency-plugin:2.10:unpack (unpack-dependencies) @ cytoscape --- [INFO] Configured Artifact: org.apache.karaf:apache-karaf:?:tar.gz [INFO] Configured Artifact: org.cytoscape.gui-distribution:splash-launcher:3.6.1:jar [INFO] apache-karaf-3.0.3.tar.gz already unpacked. [INFO] splash-launcher-3.6.1.jar already unpacked. [INFO] [INFO] --- maven-dependency-plugin:2.10:copy (copy) @ cytoscape --- [INFO] Configured Artifact: org.cytoscape:core-apps-meta:3.6.0:jar [INFO] Configured Artifact: org.cytoscape:biopax:3.3.2:jar [INFO] Configured Artifact: org.cytoscape:command-dialog:3.6.1:jar [INFO] Configured Artifact: org.cytoscape:json:3.6.1:jar [INFO] Configured Artifact: org.cytoscape:idmapper:3.6.1:jar [INFO] Configured Artifact: org.cytoscape:network-analyzer:3.3.2:jar [INFO] Configured Artifact: org.cytoscape:network-merge:3.3.4:jar [INFO] Configured Artifact: org.cytoscape:psi-mi:3.3.2:jar [INFO] Configured Artifact: org.cytoscape:sbml:3.3.3:jar [INFO] Configured Artifact: org.cytoscape:webservice-biomart-client:3.3.2:jar [INFO] Configured Artifact: org.cytoscape:webservice-psicquic-client:3.4.0:jar [INFO] Configured Artifact: org.cytoscape:cy-rest:3.7.0:jar [INFO] Configured Artifact: org.cytoscape:opencl-cycl:3.5.0:jar [INFO] Configured Artifact: org.cytoscape:opencl-layout:3.5.0:jar [INFO] Configured Artifact: org.cytoscape:welcome:3.5.2:jar [INFO] Configured Artifact: org.cytoscape.diffusion:diffusion:1.5.2:jar [INFO] Configured Artifact: org.cytoscape.copycatLayout:copycatLayout:1.2.3:jar [INFO] Configured Artifact: edu.ucsf.rbvi:cyBrowser:1.0.0:jar [INFO] Configured Artifact: org.cytoscape:cx-support:2.2.2:jar [INFO] Configured Artifact: org.cytoscape:cy-ndex-2:2.2.2:jar [INFO] org.cytoscape:core-apps-meta:3.6.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:biopax:3.3.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:command-dialog:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:json:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:idmapper:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:network-analyzer:3.3.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:network-merge:3.3.4:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:psi-mi:3.3.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:sbml:3.3.3:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:webservice-biomart-client:3.3.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:webservice-psicquic-client:3.4.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:cy-rest:3.7.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:opencl-cycl:3.5.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:opencl-layout:3.5.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:welcome:3.5.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape.diffusion:diffusion:1.5.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape.copycatLayout:copycatLayout:1.2.3:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] edu.ucsf.rbvi:cyBrowser:1.0.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:cx-support:2.2.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:cy-ndex-2:2.2.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] [INFO] --- maven-assembly-plugin:2.5.5:single (directory) @ cytoscape --- [INFO] Reading assembly descriptor: target/generated-resources/xml/xslt/config-dev.xml [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible / [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /apps [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/etc/ [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/system [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData [INFO] Copying files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape [WARNING] Assembly file: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape is not a regular file (it may be a directory). It cannot be attached to the project build for installation or deployment. [INFO] [INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-main-unix) @ cytoscape --- [INFO] Replacement run on 1 file. [INFO] [INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-main-windows) @ cytoscape --- [INFO] Replacement run on 1 file. [INFO] [INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-wrap-deployer-windows) @ cytoscape --- [INFO] Replacement run on 1 file. [INFO] [INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-disable-jmx) @ cytoscape --- [INFO] Replacement run on 1 file. [INFO] [INFO] <<< karaf-maven-plugin:3.0.3:features-add-to-repository (add-features-to-repo-dev) < compile @ cytoscape <<< [INFO] [INFO] [INFO] --- karaf-maven-plugin:3.0.3:features-add-to-repository (add-features-to-repo-dev) @ cytoscape --- [INFO] Base repo: file:///wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/ [INFO] Copying artifact: org.cytoscape.distribution:features:xml:features:3.6.1 [INFO] [INFO] --- maven-dependency-plugin:2.10:copy (copy-dependencies) @ cytoscape --- [INFO] Configured Artifact: org.cytoscape.distribution:branding:3.6.1:jar [INFO] Configured Artifact: org.cytoscape.distribution:karaf-launcher:3.6.1:jar [INFO] org.cytoscape.distribution:branding:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/branding [INFO] org.cytoscape.distribution:karaf-launcher:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/launcher [INFO] [INFO] --- maven-dependency-plugin:2.10:copy-dependencies (copy-dependencies) @ cytoscape --- [INFO] org.apache.karaf:apache-karaf:tar.gz:3.0.3 already exists in destination. [INFO] org.apache.karaf:apache-karaf:zip:3.0.3 already exists in destination. [INFO] org.apache.karaf.features:standard:xml:features:3.0.3 already exists in destination. [INFO] [INFO] --- maven-dependency-plugin:2.10:unpack (unpack-dependencies) @ cytoscape --- [INFO] Configured Artifact: org.apache.karaf:apache-karaf:?:tar.gz [INFO] Configured Artifact: org.cytoscape.gui-distribution:splash-launcher:3.6.1:jar [INFO] apache-karaf-3.0.3.tar.gz already unpacked. [INFO] splash-launcher-3.6.1.jar already unpacked. [INFO] [INFO] --- maven-dependency-plugin:2.10:copy (copy) @ cytoscape --- [INFO] Configured Artifact: org.cytoscape:core-apps-meta:3.6.0:jar [INFO] Configured Artifact: org.cytoscape:biopax:3.3.2:jar [INFO] Configured Artifact: org.cytoscape:command-dialog:3.6.1:jar [INFO] Configured Artifact: org.cytoscape:json:3.6.1:jar [INFO] Configured Artifact: org.cytoscape:idmapper:3.6.1:jar [INFO] Configured Artifact: org.cytoscape:network-analyzer:3.3.2:jar [INFO] Configured Artifact: org.cytoscape:network-merge:3.3.4:jar [INFO] Configured Artifact: org.cytoscape:psi-mi:3.3.2:jar [INFO] Configured Artifact: org.cytoscape:sbml:3.3.3:jar [INFO] Configured Artifact: org.cytoscape:webservice-biomart-client:3.3.2:jar [INFO] Configured Artifact: org.cytoscape:webservice-psicquic-client:3.4.0:jar [INFO] Configured Artifact: org.cytoscape:cy-rest:3.7.0:jar [INFO] Configured Artifact: org.cytoscape:opencl-cycl:3.5.0:jar [INFO] Configured Artifact: org.cytoscape:opencl-layout:3.5.0:jar [INFO] Configured Artifact: org.cytoscape:welcome:3.5.2:jar [INFO] Configured Artifact: org.cytoscape.diffusion:diffusion:1.5.2:jar [INFO] Configured Artifact: org.cytoscape.copycatLayout:copycatLayout:1.2.3:jar [INFO] Configured Artifact: edu.ucsf.rbvi:cyBrowser:1.0.0:jar [INFO] Configured Artifact: org.cytoscape:cx-support:2.2.2:jar [INFO] Configured Artifact: org.cytoscape:cy-ndex-2:2.2.2:jar [INFO] org.cytoscape:core-apps-meta:3.6.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:biopax:3.3.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:command-dialog:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:json:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:idmapper:3.6.1:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:network-analyzer:3.3.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:network-merge:3.3.4:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:psi-mi:3.3.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:sbml:3.3.3:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:webservice-biomart-client:3.3.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:webservice-psicquic-client:3.4.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:cy-rest:3.7.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:opencl-cycl:3.5.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:opencl-layout:3.5.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:welcome:3.5.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape.diffusion:diffusion:1.5.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape.copycatLayout:copycatLayout:1.2.3:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] edu.ucsf.rbvi:cyBrowser:1.0.0:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:cx-support:2.2.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] org.cytoscape:cy-ndex-2:2.2.2:jar already exists in /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/dependencies/apps [INFO] [INFO] --- maven-assembly-plugin:2.5.5:single (directory) @ cytoscape --- [INFO] Reading assembly descriptor: target/generated-resources/xml/xslt/config-dev.xml [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible / [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /apps [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/etc/ [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/system [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData [INFO] Copying files to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape [WARNING] Assembly file: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape is not a regular file (it may be a directory). It cannot be attached to the project build for installation or deployment. [INFO] [INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-main-unix) @ cytoscape --- [INFO] Replacement run on 1 file. [INFO] [INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-main-windows) @ cytoscape --- [INFO] Replacement run on 1 file. [INFO] [INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-wrap-deployer-windows) @ cytoscape --- [INFO] Replacement run on 1 file. [INFO] [INFO] --- maven-replacer-plugin:1.3.9:replace (patch-karaf-disable-jmx) @ cytoscape --- [INFO] Replacement run on 1 file. [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ cytoscape >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ cytoscape <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ cytoscape --- [INFO] [INFO] --- maven-assembly-plugin:2.5.5:single (unix-bin) @ cytoscape --- [INFO] Reading assembly descriptor: target/generated-resources/xml/xslt/config-unix.xml [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible / [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /apps [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/etc/ [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/system [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData [INFO] Building tar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape-unix-3.6.1.tar.gz [INFO] [INFO] --- maven-assembly-plugin:2.5.5:single (windows-bin) @ cytoscape --- [INFO] Reading assembly descriptor: target/generated-resources/xml/xslt/config-windows.xml [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible / [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /apps [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/lib [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/etc/ [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /framework/system [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData [WARNING] The assembly descriptor contains a filesystem-root relative reference, which is not cross platform compatible /sampleData [INFO] Building zip: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape-windows-3.6.1.zip [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cytoscape --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/cytoscape/3.6.1/cytoscape-3.6.1.pom [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape-unix-3.6.1.tar.gz to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/cytoscape/3.6.1/cytoscape-3.6.1.tar.gz [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape-windows-3.6.1.zip to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/cytoscape/3.6.1/cytoscape-3.6.1.zip [INFO] [INFO] ---------------< org.cytoscape.app-developer:cytoscape >---------------- [INFO] Building Distribution 3.6.1 [116/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-dependency-plugin:2.2:unpack (unpack-cytoscape) @ cytoscape --- [INFO] Configured Artifact: org.cytoscape.distribution:cytoscape:3.6.1:tar.gz [INFO] Unpacking /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape-unix-3.6.1.tar.gz to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/tmp with includes and excludes [INFO] Expanding: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/assembly/target/cytoscape-unix-3.6.1.tar.gz into /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/tmp [INFO] [INFO] --- maven-dependency-plugin:2.2:unpack (unpack-javadoc) @ cytoscape --- [INFO] Configured Artifact: org.cytoscape:swing-app-api:javadoc:3.6.1:jar [INFO] Unpacking /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/api/swing-app-api/target/swing-app-api-3.6.1-javadoc.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/API with includes and excludes [INFO] [INFO] --- maven-dependency-plugin:2.2:copy (copy) @ cytoscape --- [INFO] Configured Artifact: org.cytoscape:swing-app-api:jar-with-dependencies:3.6.1:jar [INFO] Configured Artifact: org.cytoscape:api-parent:sources:3.6.1:jar [INFO] Configured Artifact: org.cytoscape:impl-parent:sources:3.6.1:jar [INFO] Copying swing-app-api-3.6.1-jar-with-dependencies.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/lib/cytoscape-swing-app-api-3.6.1.jar [INFO] Copying api-parent-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/lib/api-3.6.1-sources.jar [INFO] Copying impl-parent-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/lib/impl-3.6.1-sources.jar [INFO] [INFO] --- maven-resources-plugin:2.5:copy-resources (copy-unzipped-dir) @ cytoscape --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 241 resources [INFO] [INFO] --- maven-antrun-plugin:1.6:run (fix-permissions) @ cytoscape --- [WARNING] Parameter tasks is deprecated, use target instead [INFO] Executing tasks main: [INFO] Executed tasks [INFO] [INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ cytoscape >>> [INFO] [INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ cytoscape <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ cytoscape --- [INFO] [INFO] --- maven-clean-plugin:2.4.1:clean (clean-temporary-directory) @ cytoscape --- [INFO] Deleting /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/tmp (includes = [], excludes = []) [INFO] Deleting /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/dependency-maven-plugin-markers (includes = [], excludes = []) [INFO] Deleting /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/target/antrun (includes = [], excludes = []) [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ cytoscape --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/app-developer/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/app-developer/cytoscape/3.6.1/cytoscape-3.6.1.pom [INFO] [INFO] -----------------------< org.cytoscape:project >------------------------ [INFO] Building Cytoscape Project POM 3.6.1 [117/117] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ project --- [INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/project/3.6.1/project-3.6.1.pom [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for Cytoscape Project POM 3.6.1: [INFO] [INFO] Basic Cytoscape POM Configuration .................. SUCCESS [ 4.855 s] [INFO] Cytoscape API Parent Project POM ................... SUCCESS [ 6.030 s] [INFO] Cytoscape Documentation Taglets .................... SUCCESS [ 2.619 s] [INFO] Cytoscape Event API (event-api) .................... SUCCESS [ 2.455 s] [INFO] Cytoscape Model API (model-api) .................... SUCCESS [ 2.310 s] [INFO] Cytoscape Service API (service-api) ................ SUCCESS [ 0.792 s] [INFO] Cytoscape View Model API (viewmodel-api) ........... SUCCESS [ 0.632 s] [INFO] Cytoscape CI API (ci-api) .......................... SUCCESS [ 0.660 s] [INFO] Cytoscape Work API (work-api) ...................... SUCCESS [ 1.277 s] [INFO] Cytoscape Presentation API (presentation-api) ...... SUCCESS [ 0.891 s] [INFO] Cytoscape Application API (application-api) ........ SUCCESS [ 0.701 s] [INFO] Cytoscape Property API (property-api) .............. SUCCESS [ 0.514 s] [INFO] Cytoscape VizMap API (vizmap-api) .................. SUCCESS [ 1.052 s] [INFO] Cytoscape Session API (session-api) ................ SUCCESS [ 1.978 s] [INFO] Cytoscape Filter API (filter-api) .................. SUCCESS [ 0.649 s] [INFO] Cytoscape IO API (io-api) .......................... SUCCESS [ 1.102 s] [INFO] Cytoscape Core Task API (core-task-api) ............ SUCCESS [ 1.721 s] [INFO] Cytoscape Equations API (equations-api) ............ SUCCESS [ 0.785 s] [INFO] Cytoscape Layout API (layout-api) .................. SUCCESS [ 1.264 s] [INFO] Cytoscape Groups API (group-api) ................... SUCCESS [ 0.804 s] [INFO] Cytoscape Groups API (jobs-api) .................... SUCCESS [ 0.679 s] [INFO] Cytoscape Webservice API (webservice-api) .......... SUCCESS [ 0.662 s] [INFO] Cytoscape Data Source API (datasource-api) ......... SUCCESS [ 0.987 s] [INFO] Cytoscape Command Executor API (command-executor-api) SUCCESS [ 0.434 s] [INFO] Cytoscape App API (app-api) ........................ SUCCESS [ 3.936 s] [INFO] Cytoscape Work Swing API (work-swing-api) .......... SUCCESS [ 0.408 s] [INFO] Cytoscape Swing Application API (swing-application-api) SUCCESS [ 0.550 s] [INFO] Cytoscape VizMap GUI API (vizmap-gui-api) .......... SUCCESS [ 0.360 s] [INFO] Cytoscape Swing Utility API (swing-util-api) ....... SUCCESS [ 0.729 s] [INFO] Cytoscape Webservice Swing API (webservice-swing-api) SUCCESS [ 0.326 s] [INFO] Cytoscape Swing App API (swing-app-api) ............ SUCCESS [ 22.483 s] [INFO] Cytoscape Util API (util-api) ...................... SUCCESS [ 0.402 s] [INFO] Cytoscape API (api-bundle) ......................... SUCCESS [ 1.842 s] [INFO] Cytoscape Implementation Parent Project POM ........ SUCCESS [ 2.001 s] [INFO] Cytoscape Equations Impl (equations-impl) .......... SUCCESS [ 1.511 s] [INFO] Cytoscape Model Impl Parent (model-impl-parent) .... SUCCESS [ 1.910 s] [INFO] Cytoscape Model Impl (model-impl) .................. SUCCESS [ 1.299 s] [INFO] Cytoscape Command Executor Impl (command-executor-impl) SUCCESS [ 0.638 s] [INFO] Cytoscape Ding Impl Parent (ding-impl) ............. SUCCESS [ 1.655 s] [INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) SUCCESS [ 6.883 s] [INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) SUCCESS [ 1.614 s] [INFO] Cytoscape View Model Impl (viewmodel-impl) ......... SUCCESS [ 0.492 s] [INFO] Cytoscape Groups Impl (group-impl) ................. SUCCESS [ 1.001 s] [INFO] Cytoscape Event Impl Parent (event-impl-parent) .... SUCCESS [ 2.691 s] [INFO] Cytoscape Event Impl (event-impl) .................. SUCCESS [ 0.645 s] [INFO] Cytoscape Filters Impl (filter-impl) ............... SUCCESS [ 3.951 s] [INFO] Cytoscape Filters 2 Impl (filter2-impl) ............ SUCCESS [ 7.233 s] [INFO] Cytoscape IO Impl Parent (io-impl-parent) .......... SUCCESS [ 2.731 s] [INFO] Cytoscape IO Impl (io-impl) ........................ SUCCESS [ 5.638 s] [INFO] Cytoscape Layout Impl (layout-impl) ................ SUCCESS [ 0.681 s] [INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) SUCCESS [ 6.405 s] [INFO] Cytoscape Editor Impl (editor-impl) ................ SUCCESS [ 0.557 s] [INFO] Cytoscape Equation Functions Impl (equations-functions-impl) SUCCESS [ 0.580 s] [INFO] Cytoscape GraphML Impl (graphml-impl) .............. SUCCESS [ 0.436 s] [INFO] Cytoscape IO Impl Performance (io-impl-performance) SUCCESS [ 7.303 s] [INFO] Cytoscape Jobs Impl (jobs-impl) .................... SUCCESS [ 0.529 s] [INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) SUCCESS [ 1.310 s] [INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) .. SUCCESS [ 0.415 s] [INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl) SUCCESS [ 0.447 s] [INFO] Cytoscape Linkout Impl (linkout-impl) .............. SUCCESS [ 0.428 s] [INFO] Cytoscape Log Swing Impl (log-swing-impl) .......... SUCCESS [ 0.504 s] [INFO] Cytoscape Manual Layout Impl (manual-layout-impl) .. SUCCESS [ 0.546 s] [INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) SUCCESS [ 1.368 s] [INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) SUCCESS [ 0.968 s] [INFO] Cytoscape App Impl (app-impl) ...................... SUCCESS [ 1.032 s] [INFO] Cytoscape Presentation Impl (presentation-impl) .... SUCCESS [ 0.390 s] [INFO] Cytoscape Property Impl (property-impl) ............ SUCCESS [ 0.376 s] [INFO] Cytoscape Search Impl (search-impl) ................ SUCCESS [ 0.405 s] [INFO] Cytoscape Session Impl (session-impl) .............. SUCCESS [ 0.867 s] [INFO] Cytoscape Swing Utility Impl (swing-util-impl) ..... SUCCESS [ 0.364 s] [INFO] Cytoscape Swing Application Impl (swing-application-impl) SUCCESS [ 2.231 s] [INFO] Cytoscape Table Browser Impl (table-browser-impl) .. SUCCESS [ 0.994 s] [INFO] Cytoscape Table Import Impl (table-import-impl) .... SUCCESS [ 6.423 s] [INFO] Cytoscape VizMap GUI Core Impl (vizmap-gui-core-impl) SUCCESS [ 0.959 s] [INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ........ SUCCESS [ 3.188 s] [INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) .. SUCCESS [ 1.939 s] [INFO] Cytoscape VizMap Impl (vizmap-impl) ................ SUCCESS [ 0.577 s] [INFO] Cytoscape Webservice Impl (webservice-impl) ........ SUCCESS [ 0.526 s] [INFO] org.cytoscape.work-headless-impl ................... SUCCESS [ 0.357 s] [INFO] org.cytoscape.work-impl ............................ SUCCESS [ 0.724 s] [INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) SUCCESS [ 2.092 s] [INFO] Cytoscape Work Swing Impl (work-swing-impl) ........ SUCCESS [ 1.411 s] [INFO] Cytoscape Application Impl (application-impl) ...... SUCCESS [ 0.517 s] [INFO] Cytoscape Datasource Impl (datasource-impl) ........ SUCCESS [ 0.463 s] [INFO] Cytoscape Support Parent Project POM ............... SUCCESS [ 0.011 s] [INFO] Cytoscape Launch Framework ......................... SUCCESS [ 0.010 s] [INFO] CommandLine Provider ............................... SUCCESS [ 0.110 s] [INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) SUCCESS [ 0.428 s] [INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) .... SUCCESS [ 0.505 s] [INFO] Cytoscape Scripting Impl (scripting-impl) .......... SUCCESS [ 0.623 s] [INFO] Cytoscape Core Task Impl (core-task-impl) .......... SUCCESS [ 2.740 s] [INFO] Cytoscape Headless Application Impl (headless-application-impl) SUCCESS [ 0.469 s] [INFO] org.cytoscape.cy-commons-cli ....................... SUCCESS [ 0.317 s] [INFO] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) SUCCESS [ 0.509 s] [INFO] Cytoscape 3 App Archetypes Parent .................. SUCCESS [ 0.092 s] [INFO] Cytoscape 3 Archetype - Creates an App providing public API SUCCESS [ 0.318 s] [INFO] Cytoscape 3 Archetype - Creates an App with a Task . SUCCESS [ 0.030 s] [INFO] Cytoscape 3 Archetype - Creates a CyAction (menu item) for desktop application SUCCESS [ 0.069 s] [INFO] Cytoscape 3 Archetype - Creates a Meta-App to install multiple related apps SUCCESS [ 0.032 s] [INFO] org.cytoscape.integration-test-support ............. SUCCESS [ 0.178 s] [INFO] Launcher ........................................... SUCCESS [ 1.781 s] [INFO] StartLevel Assembly ................................ SUCCESS [ 0.040 s] [INFO] Tasks for Testing .................................. SUCCESS [ 0.512 s] [INFO] Cytoscape Desktop Application Distribution ......... SUCCESS [ 0.015 s] [INFO] Cytoscape Third-Party Dependencies (third-party) ... SUCCESS [ 37.754 s] [INFO] SplashScreen Launcher .............................. SUCCESS [ 2.052 s] [INFO] Cytoscape Launcher ................................. SUCCESS [ 1.213 s] [INFO] Splash Updater ..................................... SUCCESS [ 0.280 s] [INFO] Cytoscape Command Line Provider Implementation ..... SUCCESS [ 0.193 s] [INFO] Cytoscape Diagnostics .............................. SUCCESS [ 0.473 s] [INFO] Cytoscape Branding ................................. SUCCESS [ 0.910 s] [INFO] Cytoscape Application Implementation Metadata ...... SUCCESS [ 0.138 s] [INFO] Cytoscape GUI-Distribution Integration Test (integration-test) SUCCESS [ 0.986 s] [INFO] Cytoscape Feature Repository ....................... SUCCESS [ 0.088 s] [INFO] Cytoscape Karaf Distribution ....................... SUCCESS [ 26.656 s] [INFO] Distribution ....................................... SUCCESS [ 43.174 s] [INFO] Cytoscape Project POM .............................. SUCCESS [ 0.026 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 04:48 min [INFO] Finished at: 2026-02-19T19:55:19Z [INFO] ------------------------------------------------------------------------ =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> cytoscape-3.6.1 depends on executable: bash - found ===> cytoscape-3.6.1 depends on file: /usr/local/openjdk8/bin/java - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for cytoscape-3.6.1 ===> Generating temporary packing list ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-02-19T19:49:59+0000' 'PKG_NOTE_ports_top_git_hash=eac71dbf758c' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=55cb6cd667eb' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for cytoscape-3.6.1 ===> Building cytoscape-3.6.1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for cytoscape-3.6.1 build of biology/cytoscape | cytoscape-3.6.1 ended at Thu Feb 19 15:42:44 EST 2026 build time: 00:52:46