=>> Building science/cif-tools build started at Thu Oct 2 15:15:39 EDT 2025 port directory: /usr/ports/science/cif-tools package name: cif-tools-1.0.12_4 building for: FreeBSD pkg.DaveG.ca 15.0-ALPHA3 FreeBSD 15.0-ALPHA3 1500064 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 609 Jun 29 20:14 /usr/ports/science/cif-tools/Makefile Ports top last git commit: a936fb9b16ba Ports top unclean checkout: no Port dir last git commit: 18632db919ce Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500064 Jail OSVERSION: 1500064 Job Id: 05 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500064 UNAME_v=FreeBSD 15.0-ALPHA3 1500064 UNAME_r=15.0-ALPHA3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git 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[pkg.DaveG.ca] Extracting pkg-2.3.1: .......... done ===> cif-tools-1.0.12_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of cif-tools-1.0.12_4 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by cif-tools-1.0.12_4 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by cif-tools-1.0.12_4 for building => SHA256 Checksum OK for PDB-REDO-cif-tools-v1.0.12_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by cif-tools-1.0.12_4 for building ===> Extracting for cif-tools-1.0.12_4 => SHA256 Checksum OK for PDB-REDO-cif-tools-v1.0.12_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for cif-tools-1.0.12_4 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> cif-tools-1.0.12_4 depends on package: libmcfp>0 - not found ===> Installing existing package /packages/All/libmcfp-1.3.5.pkg [pkg.DaveG.ca] Installing libmcfp-1.3.5... [pkg.DaveG.ca] Extracting libmcfp-1.3.5: .......... done ===> cif-tools-1.0.12_4 depends on package: libmcfp>0 - found ===> Returning to build of cif-tools-1.0.12_4 ===> cif-tools-1.0.12_4 depends on executable: mrc - not found ===> Installing existing package /packages/All/mrc-1.3.15.pkg [pkg.DaveG.ca] Installing mrc-1.3.15... [pkg.DaveG.ca] Extracting mrc-1.3.15: ... done ===> cif-tools-1.0.12_4 depends on executable: mrc - found ===> Returning to build of cif-tools-1.0.12_4 ===> cif-tools-1.0.12_4 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.7_1.pkg [pkg.DaveG.ca] Installing cmake-core-3.31.7_1... [pkg.DaveG.ca] `-- Installing expat-2.7.2... [pkg.DaveG.ca] `-- Extracting expat-2.7.2: .......... done [pkg.DaveG.ca] `-- Installing jsoncpp-1.9.6_1... [pkg.DaveG.ca] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg.DaveG.ca] `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | `-- Installing libunistring-1.3... [pkg.DaveG.ca] | `-- Extracting libunistring-1.3: .......... done [pkg.DaveG.ca] `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] `-- Installing libuv-1.51.0... [pkg.DaveG.ca] `-- Extracting libuv-1.51.0: .......... done [pkg.DaveG.ca] `-- Installing rhash-1.4.4_1... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.23.1... [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.23.1: .......... done [pkg.DaveG.ca] `-- Extracting rhash-1.4.4_1: .......... done [pkg.DaveG.ca] Extracting cmake-core-3.31.7_1: .......... done ===> cif-tools-1.0.12_4 depends on file: /usr/local/bin/cmake - found ===> Returning to build of cif-tools-1.0.12_4 ===> cif-tools-1.0.12_4 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> cif-tools-1.0.12_4 depends on file: /usr/local/bin/ccache - found ===> Returning to build of cif-tools-1.0.12_4 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> cif-tools-1.0.12_4 depends on shared library: libboost_iostreams.so - not found ===> Installing existing package /packages/All/boost-libs-1.88.0_2.pkg [pkg.DaveG.ca] Installing boost-libs-1.88.0_2... [pkg.DaveG.ca] `-- Installing icu-76.1,1... [pkg.DaveG.ca] `-- Extracting icu-76.1,1: .......... done [pkg.DaveG.ca] `-- Installing zstd-1.5.7... [pkg.DaveG.ca] | `-- Installing liblz4-1.10.0,1... [pkg.DaveG.ca] | `-- Extracting liblz4-1.10.0,1: .......... done [pkg.DaveG.ca] `-- Extracting zstd-1.5.7: .......... done [pkg.DaveG.ca] Extracting boost-libs-1.88.0_2: .......... done ===== Message from boost-libs-1.88.0_2: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> cif-tools-1.0.12_4 depends on shared library: libboost_iostreams.so - found (/usr/local/lib/libboost_iostreams.so) ===> Returning to build of cif-tools-1.0.12_4 ===> cif-tools-1.0.12_4 depends on shared library: libcifpp.so - not found ===> Installing existing package /packages/All/libcifpp-7.0.8_2.pkg [pkg.DaveG.ca] Installing libcifpp-7.0.8_2... [pkg.DaveG.ca] `-- Installing bash-5.3.3_1... [pkg.DaveG.ca] `-- Extracting bash-5.3.3_1: .......... done [pkg.DaveG.ca] Extracting libcifpp-7.0.8_2: .......... done ===> cif-tools-1.0.12_4 depends on shared library: libcifpp.so - found (/usr/local/lib/libcifpp.so) ===> Returning to build of cif-tools-1.0.12_4 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for cif-tools-1.0.12_4 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/cif-tools/work/.build -- The CXX compiler identification is Clang 19.1.7 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for C++ include filesystem -- Looking for C++ include filesystem - found -- Performing Test CXX_FILESYSTEM_NO_LINK_NEEDED -- 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CMakeFiles/generate_cif2pdb_depends_file.dir/build.make CMakeFiles/generate_cif2pdb_depends_file.dir/depend --- CMakeFiles/generate_cif2pdb_depends_file.dir/depend --- cd /wrkdirs/usr/ports/science/cif-tools/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build/CMakeFiles/generate_cif2pdb_depends_file.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/generate_cif2pdb_depends_file.dir/build.make CMakeFiles/generate_cif2pdb_depends_file.dir/build --- CMakeFiles/generate_cif-diff_depends_file.dir/all --- /usr/bin/make -f CMakeFiles/generate_cif-diff_depends_file.dir/build.make CMakeFiles/generate_cif-diff_depends_file.dir/depend --- CMakeFiles/generate_cif-diff_depends_file.dir/depend --- cd 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/wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build/CMakeFiles/generate_cif-grep_depends_file.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/generate_cif-grep_depends_file.dir/build.make CMakeFiles/generate_cif-grep_depends_file.dir/build --- CMakeFiles/generate_cif-grep_depends_file --- --- CMakeFiles/generate_cif-merge_depends_file.dir/all --- /usr/bin/make -f CMakeFiles/generate_cif-merge_depends_file.dir/build.make CMakeFiles/generate_cif-merge_depends_file.dir/depend --- CMakeFiles/generate_cif-merge_depends_file.dir/depend --- cd /wrkdirs/usr/ports/science/cif-tools/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build/CMakeFiles/generate_cif-merge_depends_file.dir/DependInfo.cmake --- CMakeFiles/generate_cif-validate_depends_file.dir/all --- /usr/bin/make -f CMakeFiles/generate_cif-validate_depends_file.dir/build.make CMakeFiles/generate_cif-validate_depends_file.dir/depend --- CMakeFiles/generate_pdb2cif_depends_file.dir/all --- --- CMakeFiles/generate_pdb2cif_depends_file --- --- CMakeFiles/generate_cif2pdb_depends_file.dir/all --- --- CMakeFiles/generate_cif2pdb_depends_file --- --- CMakeFiles/generate_cif-diff_depends_file.dir/all --- /usr/bin/make -f CMakeFiles/generate_cif-diff_depends_file.dir/build.make CMakeFiles/generate_cif-diff_depends_file.dir/build --- CMakeFiles/generate_mmCQL_depends_file.dir/all --- /usr/bin/make -f CMakeFiles/generate_mmCQL_depends_file.dir/build.make CMakeFiles/generate_mmCQL_depends_file.dir/depend --- CMakeFiles/generate_cif-grep_depends_file.dir/all --- [ 2%] Generating depends file for cif-grep resources 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CMakeFiles/mmCQL.dir/src/mmCQL.cpp.o -c /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12/src/mmCQL.cpp --- CMakeFiles/cif-merge.dir/all --- --- CMakeFiles/cif-merge.dir/src/pr-main.cpp.o --- [ 77%] Building CXX object CMakeFiles/cif-merge.dir/src/pr-main.cpp.o /usr/local/libexec/ccache/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/local/share/libcifpp\" -DUSE_RSRC -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -pthread -MD -MT CMakeFiles/cif-merge.dir/src/pr-main.cpp.o -MF CMakeFiles/cif-merge.dir/src/pr-main.cpp.o.d -o CMakeFiles/cif-merge.dir/src/pr-main.cpp.o -c /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12/src/pr-main.cpp --- CMakeFiles/mmCQL.dir/all --- --- CMakeFiles/mmCQL.dir/src/pr-main.cpp.o --- [ 80%] Building CXX object CMakeFiles/mmCQL.dir/src/pr-main.cpp.o /usr/local/libexec/ccache/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/local/share/libcifpp\" -DUSE_RSRC -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -std=gnu++20 -pthread -MD -MT CMakeFiles/mmCQL.dir/src/pr-main.cpp.o -MF CMakeFiles/mmCQL.dir/src/pr-main.cpp.o.d -o CMakeFiles/mmCQL.dir/src/pr-main.cpp.o -c /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12/src/pr-main.cpp --- CMakeFiles/cif-validate.dir/all --- --- cif-validate --- [ 82%] Linking CXX executable cif-validate /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cif-validate.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -Xlinker --dependency-file=CMakeFiles/cif-validate.dir/link.d "CMakeFiles/cif-validate.dir/src/cif-validate.cpp.o" "CMakeFiles/cif-validate.dir/src/pr-main.cpp.o" "mrc-cif-validate.dir/rsrc.obj" -o cif-validate 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[-Wunqualified-std-cast-call] 359 | diffs.push_back(new ValueDiff{ra, rb, move(missingA), move(missingB), move(different)}); | ^ | std:: /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12/src/cif-diff.cpp:359:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 359 | diffs.push_back(new ValueDiff{ra, rb, move(missingA), move(missingB), move(different)}); | ^ | std:: /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12/src/cif-diff.cpp:359:74: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call] 359 | diffs.push_back(new ValueDiff{ra, rb, move(missingA), move(missingB), move(different)}); | ^ | std:: 6 warnings generated. --- cif-diff --- [ 85%] Linking CXX executable cif-diff /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cif-diff.dir/link.txt --verbose=1 --- CMakeFiles/mmCQL.dir/all --- [ 88%] Linking CXX executable mmCQL /usr/local/bin/cmake -E cmake_link_script CMakeFiles/mmCQL.dir/link.txt --verbose=1 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[100%] Linking CXX executable cif-grep /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cif-grep.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -Xlinker --dependency-file=CMakeFiles/cif-grep.dir/link.d "CMakeFiles/cif-grep.dir/src/cif-grep.cpp.o" "CMakeFiles/cif-grep.dir/src/pr-main.cpp.o" "mrc-cif-grep.dir/rsrc.obj" -o cif-grep -Wl,-rpath,/usr/local/lib: /usr/local/lib/libcifpp.so.7.0.8 -lpthread /usr/lib/libz.so [100%] Built target cif-grep /usr/local/bin/cmake -E cmake_progress_start /wrkdirs/usr/ports/science/cif-tools/work/.build/CMakeFiles 0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== 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/wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build/CMakeFiles/pdb2cif.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/pdb2cif.dir/build.make CMakeFiles/pdb2cif.dir/build [ 14%] Built target pdb2cif /usr/bin/make -f CMakeFiles/generate_cif2pdb_depends_file.dir/build.make CMakeFiles/generate_cif2pdb_depends_file.dir/depend cd /wrkdirs/usr/ports/science/cif-tools/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build/CMakeFiles/generate_cif2pdb_depends_file.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/generate_cif2pdb_depends_file.dir/build.make CMakeFiles/generate_cif2pdb_depends_file.dir/build [ 17%] Generating 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CMakeFiles/generate_cif-diff_depends_file.dir/build.make CMakeFiles/generate_cif-diff_depends_file.dir/depend cd /wrkdirs/usr/ports/science/cif-tools/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build/CMakeFiles/generate_cif-diff_depends_file.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/generate_cif-diff_depends_file.dir/build.make CMakeFiles/generate_cif-diff_depends_file.dir/build [ 31%] Generating depends file for cif-diff resources /usr/local/bin/mrc -d /wrkdirs/usr/ports/science/cif-tools/work/.build/mrc-cif-diff.dir/rsrc.d -o /wrkdirs/usr/ports/science/cif-tools/work/.build/mrc-cif-diff.dir/rsrc.obj /usr/local/share/libcifpp/mmcif_ma.dic /usr/local/share/libcifpp/mmcif_pdbx.dic /usr/local/share/libcifpp/mmcif_ddl.dic [ 31%] Built target generate_cif-diff_depends_file /usr/bin/make -f CMakeFiles/cif-diff.dir/build.make CMakeFiles/cif-diff.dir/depend cd /wrkdirs/usr/ports/science/cif-tools/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build/CMakeFiles/cif-diff.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/cif-diff.dir/build.make CMakeFiles/cif-diff.dir/build [ 42%] Built target cif-diff /usr/bin/make -f CMakeFiles/generate_cif-grep_depends_file.dir/build.make CMakeFiles/generate_cif-grep_depends_file.dir/depend cd /wrkdirs/usr/ports/science/cif-tools/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build/CMakeFiles/generate_cif-grep_depends_file.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/generate_cif-grep_depends_file.dir/build.make CMakeFiles/generate_cif-grep_depends_file.dir/build [ 45%] Generating depends file for cif-grep resources /usr/local/bin/mrc -d /wrkdirs/usr/ports/science/cif-tools/work/.build/mrc-cif-grep.dir/rsrc.d -o /wrkdirs/usr/ports/science/cif-tools/work/.build/mrc-cif-grep.dir/rsrc.obj /usr/local/share/libcifpp/mmcif_ma.dic /usr/local/share/libcifpp/mmcif_pdbx.dic /usr/local/share/libcifpp/mmcif_ddl.dic [ 45%] Built target generate_cif-grep_depends_file /usr/bin/make -f CMakeFiles/cif-grep.dir/build.make CMakeFiles/cif-grep.dir/depend cd /wrkdirs/usr/ports/science/cif-tools/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build/CMakeFiles/cif-grep.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/cif-grep.dir/build.make CMakeFiles/cif-grep.dir/build [ 57%] Built target cif-grep /usr/bin/make -f CMakeFiles/generate_cif-merge_depends_file.dir/build.make CMakeFiles/generate_cif-merge_depends_file.dir/depend cd /wrkdirs/usr/ports/science/cif-tools/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build/CMakeFiles/generate_cif-merge_depends_file.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/generate_cif-merge_depends_file.dir/build.make CMakeFiles/generate_cif-merge_depends_file.dir/build [ 60%] Generating depends file for cif-merge resources /usr/local/bin/mrc -d /wrkdirs/usr/ports/science/cif-tools/work/.build/mrc-cif-merge.dir/rsrc.d -o /wrkdirs/usr/ports/science/cif-tools/work/.build/mrc-cif-merge.dir/rsrc.obj /usr/local/share/libcifpp/mmcif_ma.dic /usr/local/share/libcifpp/mmcif_pdbx.dic /usr/local/share/libcifpp/mmcif_ddl.dic [ 60%] Built target generate_cif-merge_depends_file /usr/bin/make -f CMakeFiles/cif-merge.dir/build.make CMakeFiles/cif-merge.dir/depend cd /wrkdirs/usr/ports/science/cif-tools/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build/CMakeFiles/cif-merge.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/cif-merge.dir/build.make CMakeFiles/cif-merge.dir/build [ 71%] Built target cif-merge /usr/bin/make -f CMakeFiles/generate_cif-validate_depends_file.dir/build.make CMakeFiles/generate_cif-validate_depends_file.dir/depend cd /wrkdirs/usr/ports/science/cif-tools/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build/CMakeFiles/generate_cif-validate_depends_file.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/generate_cif-validate_depends_file.dir/build.make CMakeFiles/generate_cif-validate_depends_file.dir/build [ 74%] Generating depends file for cif-validate resources /usr/local/bin/mrc -d /wrkdirs/usr/ports/science/cif-tools/work/.build/mrc-cif-validate.dir/rsrc.d -o /wrkdirs/usr/ports/science/cif-tools/work/.build/mrc-cif-validate.dir/rsrc.obj /usr/local/share/libcifpp/mmcif_ma.dic /usr/local/share/libcifpp/mmcif_pdbx.dic /usr/local/share/libcifpp/mmcif_ddl.dic [ 74%] Built target generate_cif-validate_depends_file /usr/bin/make -f CMakeFiles/cif-validate.dir/build.make CMakeFiles/cif-validate.dir/depend cd /wrkdirs/usr/ports/science/cif-tools/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build/CMakeFiles/cif-validate.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/cif-validate.dir/build.make CMakeFiles/cif-validate.dir/build [ 85%] Built target cif-validate /usr/bin/make -f CMakeFiles/generate_mmCQL_depends_file.dir/build.make CMakeFiles/generate_mmCQL_depends_file.dir/depend cd /wrkdirs/usr/ports/science/cif-tools/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build/CMakeFiles/generate_mmCQL_depends_file.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/generate_mmCQL_depends_file.dir/build.make CMakeFiles/generate_mmCQL_depends_file.dir/build [ 88%] Generating depends file for mmCQL resources /usr/local/bin/mrc -d /wrkdirs/usr/ports/science/cif-tools/work/.build/mrc-mmCQL.dir/rsrc.d -o /wrkdirs/usr/ports/science/cif-tools/work/.build/mrc-mmCQL.dir/rsrc.obj /usr/local/share/libcifpp/mmcif_ma.dic /usr/local/share/libcifpp/mmcif_pdbx.dic /usr/local/share/libcifpp/mmcif_ddl.dic [ 88%] Built target generate_mmCQL_depends_file /usr/bin/make -f CMakeFiles/mmCQL.dir/build.make CMakeFiles/mmCQL.dir/depend cd /wrkdirs/usr/ports/science/cif-tools/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/cif-tools-1.0.12 /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build /wrkdirs/usr/ports/science/cif-tools/work/.build/CMakeFiles/mmCQL.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/mmCQL.dir/build.make CMakeFiles/mmCQL.dir/build [100%] Built target mmCQL /usr/local/bin/cmake -E cmake_progress_start /wrkdirs/usr/ports/science/cif-tools/work/.build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall Installing the project stripped... /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/bin/pdb2cif -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/bin/pdb2cif" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/share/man/man1/pdb2cif.1 -- Installing: /wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/bin/cif2pdb -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/bin/cif2pdb" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/share/man/man1/cif2pdb.1 -- Installing: /wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/bin/cif-diff -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/bin/cif-diff" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/share/man/man1/cif-diff.1 -- Installing: /wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/bin/cif-grep -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/bin/cif-grep" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/share/man/man1/cif-grep.1 -- Installing: /wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/bin/cif-merge -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/bin/cif-merge" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/share/man/man1/cif-merge.1 -- Installing: /wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/bin/cif-validate -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/bin/cif-validate" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/share/man/man1/cif-validate.1 -- Installing: /wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/bin/mmCQL -- Set non-toolchain portion of runtime path of "/wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/bin/mmCQL" to "/usr/local/lib" -- Installing: /wrkdirs/usr/ports/science/cif-tools/work/stage/usr/local/share/man/man1/mmCQL.1 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-10-02T19:15:39+0000' 'PKG_NOTE_ports_top_git_hash=a936fb9b16ba' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=18632db919ce' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for cif-tools-1.0.12_4 ===> Building cif-tools-1.0.12_4 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for cif-tools-1.0.12_4 build of science/cif-tools | cif-tools-1.0.12_4 ended at Thu Oct 2 15:18:29 EDT 2025 build time: 00:02:53