=>> Building science/chemicalfun build started at Fri Jan 23 12:47:47 EST 2026 port directory: /usr/ports/science/chemicalfun package name: chemicalfun-0.1.8_4 building for: FreeBSD pkg.DaveG.ca 13.5-RELEASE-p7 FreeBSD 13.5-RELEASE-p7 1305000 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 2188 Nov 8 22:00 /usr/ports/science/chemicalfun/Makefile Ports top last git commit: 076a295eb33c Ports top unclean checkout: no Port dir last git commit: b2cea6a8b1c6 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1305000 Job Id: 11 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1305000 UNAME_v=FreeBSD 13.5-RELEASE-p7 1305000 UNAME_r=13.5-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/11/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_13_5_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for chemicalfun-0.1.8_4: PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/chemicalfun/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/chemicalfun/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/chemicalfun/work/.cache HOME=/wrkdirs/usr/ports/science/chemicalfun/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/chemicalfun/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/chemicalfun/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/chemicalfun/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/chemicalfun/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/chemicalfun/work/.cache HOME=/wrkdirs/usr/ports/science/chemicalfun/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/chemicalfun/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/chemicalfun/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/chemicalfun/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib -lfmt " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON="" NO_PYTHON="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=13.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/chemicalfun" EXAMPLESDIR="share/examples/chemicalfun" DATADIR="share/chemicalfun" WWWDIR="www/chemicalfun" ETCDIR="etc/chemicalfun" --End PLIST_SUB-- --SUB_LIST-- PYTHON="" NO_PYTHON="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/chemicalfun DOCSDIR=/usr/local/share/doc/chemicalfun EXAMPLESDIR=/usr/local/share/examples/chemicalfun WWWDIR=/usr/local/www/chemicalfun ETCDIR=/usr/local/etc/chemicalfun --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> chemicalfun-0.1.8_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.5.1.pkg [pkg.DaveG.ca] Installing pkg-2.5.1... [pkg.DaveG.ca] Extracting pkg-2.5.1: .......... done ===> chemicalfun-0.1.8_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of chemicalfun-0.1.8_4 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by chemicalfun-0.1.8_4 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by chemicalfun-0.1.8_4 for building => SHA256 Checksum OK for chemicalfun-0.1.8.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by chemicalfun-0.1.8_4 for building ===> Extracting for chemicalfun-0.1.8_4 => SHA256 Checksum OK for chemicalfun-0.1.8.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for chemicalfun-0.1.8_4 ===> Applying FreeBSD patches for chemicalfun-0.1.8_4 from /usr/ports/science/chemicalfun/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> chemicalfun-0.1.8_4 depends on package: nlohmann-json>0 - not found ===> Installing existing package /packages/All/nlohmann-json-3.12.0_1.pkg [pkg.DaveG.ca] Installing nlohmann-json-3.12.0_1... [pkg.DaveG.ca] Extracting nlohmann-json-3.12.0_1: .......... done ===> chemicalfun-0.1.8_4 depends on package: nlohmann-json>0 - found ===> Returning to build of chemicalfun-0.1.8_4 ===> chemicalfun-0.1.8_4 depends on package: py311-setuptools>0 - not found ===> Installing existing package /packages/All/py311-setuptools-63.1.0_3.pkg [pkg.DaveG.ca] Installing py311-setuptools-63.1.0_3... [pkg.DaveG.ca] `-- Installing python311-3.11.14... [pkg.DaveG.ca] | `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] | `-- Installing libffi-3.5.1... [pkg.DaveG.ca] | `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] | `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] | `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] | `-- Installing readline-8.3.3... [pkg.DaveG.ca] | `-- Extracting readline-8.3.3: .......... done [pkg.DaveG.ca] `-- Extracting python311-3.11.14: .......... done [pkg.DaveG.ca] Extracting py311-setuptools-63.1.0_3: .......... done ===== Message from python311-3.11.14: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> chemicalfun-0.1.8_4 depends on package: py311-setuptools>0 - found ===> Returning to build of chemicalfun-0.1.8_4 ===> chemicalfun-0.1.8_4 depends on package: py311-wheel>0 - not found ===> Installing existing package /packages/All/py311-wheel-0.45.1.pkg [pkg.DaveG.ca] Installing py311-wheel-0.45.1... [pkg.DaveG.ca] Extracting py311-wheel-0.45.1: .......... done ===> chemicalfun-0.1.8_4 depends on package: py311-wheel>0 - found ===> Returning to build of chemicalfun-0.1.8_4 ===> chemicalfun-0.1.8_4 depends on package: py311-pip>0 - not found ===> Installing existing package /packages/All/py311-pip-23.3.2_4.pkg [pkg.DaveG.ca] Installing py311-pip-23.3.2_4... [pkg.DaveG.ca] Extracting py311-pip-23.3.2_4: .......... done ===== Message from py311-pip-23.3.2_4: -- pip MUST ONLY be used: * With the --user flag, OR * To install or manage Python packages in virtual environments Failure to follow this warning can and will result in an inconsistent system-wide Python environment (LOCALBASE/lib/pythonX.Y/site-packages) and cause errors. Avoid using pip as root unless you know what you're doing. ===> chemicalfun-0.1.8_4 depends on package: py311-pip>0 - found ===> Returning to build of chemicalfun-0.1.8_4 ===> chemicalfun-0.1.8_4 depends on package: pybind11>0 - not found ===> Installing existing package /packages/All/pybind11-3.0.1.pkg [pkg.DaveG.ca] Installing pybind11-3.0.1... [pkg.DaveG.ca] Extracting pybind11-3.0.1: .......... done ===> chemicalfun-0.1.8_4 depends on package: pybind11>0 - found ===> Returning to build of chemicalfun-0.1.8_4 ===> chemicalfun-0.1.8_4 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.10.pkg [pkg.DaveG.ca] Installing cmake-core-3.31.10... [pkg.DaveG.ca] `-- Installing expat-2.7.3... [pkg.DaveG.ca] `-- Extracting expat-2.7.3: .......... done [pkg.DaveG.ca] `-- Installing jsoncpp-1.9.6_1... [pkg.DaveG.ca] `-- Extracting jsoncpp-1.9.6_1: .......... done [pkg.DaveG.ca] `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | `-- Installing libunistring-1.4.1... [pkg.DaveG.ca] | `-- Extracting libunistring-1.4.1: .......... done [pkg.DaveG.ca] `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] `-- Installing libuv-1.51.0... [pkg.DaveG.ca] `-- Extracting libuv-1.51.0: .......... done [pkg.DaveG.ca] `-- Installing rhash-1.4.6... [pkg.DaveG.ca] `-- Extracting rhash-1.4.6: .......... done [pkg.DaveG.ca] Extracting cmake-core-3.31.10: .......... done ===> chemicalfun-0.1.8_4 depends on file: /usr/local/bin/cmake - found ===> Returning to build of chemicalfun-0.1.8_4 ===> chemicalfun-0.1.8_4 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.13.2,4.pkg [pkg.DaveG.ca] Installing ninja-1.13.2,4... [pkg.DaveG.ca] Extracting ninja-1.13.2,4: ..... done ===> chemicalfun-0.1.8_4 depends on executable: ninja - found ===> Returning to build of chemicalfun-0.1.8_4 ===> chemicalfun-0.1.8_4 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.4.0_4.pkg [pkg.DaveG.ca] Installing eigen-3.4.0_4... [pkg.DaveG.ca] `-- Installing blas-3.12.1... [pkg.DaveG.ca] | `-- Installing gcc14-14.2.0_4... [pkg.DaveG.ca] | | `-- Installing binutils-2.44,1... [pkg.DaveG.ca] | | `-- Installing zstd-1.5.7_1... [pkg.DaveG.ca] | | `-- Extracting zstd-1.5.7_1: .......... done [pkg.DaveG.ca] | | `-- Extracting binutils-2.44,1: .......... done [pkg.DaveG.ca] | | `-- Installing gmp-6.3.0... [pkg.DaveG.ca] | | `-- Extracting gmp-6.3.0: .......... done [pkg.DaveG.ca] | | `-- Installing mpc-1.3.1_1... [pkg.DaveG.ca] | | `-- Installing mpfr-4.2.2,1... [pkg.DaveG.ca] | | `-- Extracting mpfr-4.2.2,1: .......... done [pkg.DaveG.ca] | | `-- Extracting mpc-1.3.1_1: ...... done [pkg.DaveG.ca] | `-- Extracting gcc14-14.2.0_4: .......... done [pkg.DaveG.ca] `-- Extracting blas-3.12.1: ..... done [pkg.DaveG.ca] `-- Installing lapack-3.12.1... [pkg.DaveG.ca] `-- Extracting lapack-3.12.1: .......... done [pkg.DaveG.ca] Extracting eigen-3.4.0_4: .......... done ===== Message from gcc14-14.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> chemicalfun-0.1.8_4 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of chemicalfun-0.1.8_4 ===> chemicalfun-0.1.8_4 depends on file: /usr/local/bin/python3.11 - found ===> chemicalfun-0.1.8_4 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc14 create symlink for gcc14 (world) create symlink for g++14 create symlink for g++14 (world) create symlink for cpp14 create symlink for cpp14 (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> chemicalfun-0.1.8_4 depends on file: /usr/local/bin/ccache - found ===> Returning to build of chemicalfun-0.1.8_4 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> chemicalfun-0.1.8_4 depends on shared library: libfmt.so - not found ===> Installing existing package /packages/All/libfmt-12.1.0.pkg [pkg.DaveG.ca] Installing libfmt-12.1.0... [pkg.DaveG.ca] Extracting libfmt-12.1.0: .......... done ===> chemicalfun-0.1.8_4 depends on shared library: libfmt.so - found (/usr/local/lib/libfmt.so) ===> Returning to build of chemicalfun-0.1.8_4 ===> chemicalfun-0.1.8_4 depends on shared library: libspdlog.so - not found ===> Installing existing package /packages/All/spdlog-1.16.0_1.pkg [pkg.DaveG.ca] Installing spdlog-1.16.0_1... [pkg.DaveG.ca] Extracting spdlog-1.16.0_1: .......... done ===> chemicalfun-0.1.8_4 depends on shared library: libspdlog.so - found (/usr/local/lib/libspdlog.so) ===> Returning to build of chemicalfun-0.1.8_4 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for chemicalfun-0.1.8_4 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/chemicalfun/work/.build CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is Clang 19.1.7 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- CCache: using ccache to potentially speed up future build tasks. CMake Warning (dev) at /usr/local/share/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/local/share/cmake/pybind11/pybind11Tools.cmake:44 (find_package) /usr/local/share/cmake/pybind11/pybind11Common.cmake:226 (include) /usr/local/share/cmake/pybind11/pybind11Config.cmake:257 (include) CMakeLists.txt:95 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python3.11 (found suitable version "3.11.14", minimum required is "3.8") -- Found PythonLibs: /usr/local/lib/libpython3.11.so -- Performing Test HAS_FLTO_THIN -- Performing Test HAS_FLTO_THIN - Success -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/local/include (found version "3.0.1") -- Found pybind11 v3.0.1: /usr/local/include;/usr/local/include/python3.11 -- Found pybind11 v3.0.1: /usr/local/include;/usr/local/include/python3.11 -- Building test suite: ON -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE CMake Deprecation Warning at tests/googletest/CMakeLists.txt:4 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done CMake Deprecation Warning at tests/googletest/googlemock/CMakeLists.txt:39 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Deprecation Warning at tests/googletest/googletest/CMakeLists.txt:49 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Found Python: /usr/local/bin/python3.11 (found version "3.11.14") found components: Interpreter -- Configuring done (2.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: BOOST_PYTHON_SUFFIX CMAKE_COLOR_MAKEFILE CMAKE_VERBOSE_MAKEFILE FETCHCONTENT_FULLY_DISCONNECTED Python3_EXECUTABLE -- Build files have been written to: /wrkdirs/usr/ports/science/chemicalfun/work/.build =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for chemicalfun-0.1.8_4 [ 3% 18/30] /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -DGTEST_CREATE_SHARED_LIBRARY=1 -Dgmock_main_EXPORTS -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/src -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/include -isystem /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/tests/googletest/googlemock/include -isystem /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/tests/googletest/googlemock -isystem /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/tests/googletest/googletest/include -isystem /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/tests/googletest/googletest -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -std=c++17 -fPIC -Wall -Wshadow -Wconversion -DGTEST_HAS_PTHREAD=1 -fexceptions -W -Wpointer-arith -Wreturn-type -Wcast-qual -Wwrite-strings -Wswitch -Wunused-parameter 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-pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -std=c++17 -fPIC -Wall -Wshadow -Wconversion -DGTEST_HAS_PTHREAD=1 -fexceptions -W -Wpointer-arith -Wreturn-type -Wcast-qual -Wwrite-strings -Wswitch -Wunused-parameter -Wcast-align -Wchar-subscripts -Winline -Wredundant-decls -Wall -Wno-ignored-attributes -Wno-pedantic -Wno-variadic-macros -Wno-deprecated -pthread -MD -MT tests/REQUIRED/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -MF tests/REQUIRED/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o.d -o tests/REQUIRED/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/tests/googletest/googletest/src/gtest-all.cc [ 60% 20/30] : && /usr/local/libexec/ccache/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -L/usr/local/lib -lfmt -Xlinker --dependency-file=tests/REQUIRED/googletest/CMakeFiles/gtest.dir/link.d -shared -Wl,-soname,libgtest.so.1.13.0 -o lib/libgtest.so.1.13.0 tests/REQUIRED/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o -lpthread && : [ 63% 21/30] /usr/local/bin/cmake -E cmake_symlink_library lib/libgtest.so.1.13.0 lib/libgtest.so.1.13.0 lib/libgtest.so && : [ 66% 23/30] : && /usr/local/libexec/ccache/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -L/usr/local/lib -lfmt -Xlinker --dependency-file=tests/REQUIRED/googletest/CMakeFiles/gtest_main.dir/link.d -shared -Wl,-soname,libgtest_main.so.1.13.0 -o lib/libgtest_main.so.1.13.0 tests/REQUIRED/googletest/CMakeFiles/gtest_main.dir/src/gtest_main.cc.o -Wl,-rpath,/wrkdirs/usr/ports/science/chemicalfun/work/.build/lib lib/libgtest.so.1.13.0 -lpthread && : [ 70% 24/30] : && /usr/local/libexec/ccache/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -L/usr/local/lib -lfmt -Xlinker --dependency-file=tests/REQUIRED/googlemock/CMakeFiles/gmock.dir/link.d -shared -Wl,-soname,libgmock.so.1.13.0 -o lib/libgmock.so.1.13.0 tests/REQUIRED/googlemock/CMakeFiles/gmock.dir/src/gmock-all.cc.o -Wl,-rpath,/wrkdirs/usr/ports/science/chemicalfun/work/.build/lib lib/libgtest.so.1.13.0 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-DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIE -Wall -Wno-ignored-attributes -Wno-pedantic -Wno-variadic-macros -Wno-deprecated -pthread -MD -MT tests/CMakeFiles/test_main.dir/main.cpp.o -MF tests/CMakeFiles/test_main.dir/main.cpp.o.d -o tests/CMakeFiles/test_main.dir/main.cpp.o -c /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/tests/main.cpp [ 90% 28/30] : && /usr/local/libexec/ccache/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -L/usr/local/lib -lfmt -Xlinker --dependency-file=tests/CMakeFiles/test_main.dir/link.d tests/CMakeFiles/test_main.dir/main.cpp.o -o tests/test_main -Wl,-rpath,/wrkdirs/usr/ports/science/chemicalfun/work/.build/src:/wrkdirs/usr/ports/science/chemicalfun/work/.build/lib src/libChemicalFun.so lib/libgtest.so.1.13.0 -lpthread && : [ 93% 28/30] /usr/local/bin/ccache /usr/local/libexec/ccache/c++ -DPyChemicalFun_EXPORTS -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/src -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/include -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/python -I/include/eigen3 -I/usr/local/include/eigen3 -I/wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376 -isystem /usr/local/include/python3.11 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -Wall -Wno-ignored-attributes -Wno-pedantic -Wno-variadic-macros -Wno-deprecated -MD -MT python/PyChemicalFun/CMakeFiles/PyChemicalFun.dir/pyChemicalData.cpp.o -MF python/PyChemicalFun/CMakeFiles/PyChemicalFun.dir/pyChemicalData.cpp.o.d -o python/PyChemicalFun/CMakeFiles/PyChemicalFun.dir/pyChemicalData.cpp.o -c /wrkdirs/usr/ports/science/chemicalfun/work/gems4-chemicalfun-46c628fef376/python/PyChemicalFun/pyChemicalData.cpp [ 96% 29/30] : && /usr/local/libexec/ccache/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DSPDLOG_FMT_EXTERNAL -isystem /usr/local/include -DNDEBUG -L/usr/local/lib -lfmt -Xlinker --dependency-file=python/PyChemicalFun/CMakeFiles/PyChemicalFun.dir/link.d -shared -o python/PyChemicalFun/PyChemicalFun.cpython-311.so python/PyChemicalFun/CMakeFiles/PyChemicalFun.dir/pyChemicalData.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/chemicalfun/work/.build/src src/libChemicalFun.so && : [100% 30/30] cd /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/chemicalfun && /usr/local/bin/cmake -E copy /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/PyChemicalFun/PyChemicalFun.cpython-311.so /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/chemicalfun/PyChemicalFun.cpython-311.so && /usr/local/bin/python3.11 -m pip install --root /wrkdirs/usr/ports/science/chemicalfun/work/stage --prefix /usr/local --ignore-installed . Processing /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/chemicalfun Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Building wheels for collected packages: chemicalfun Building wheel for chemicalfun (setup.py): started Building wheel for chemicalfun (setup.py): finished with status 'done' Created wheel for chemicalfun: filename=chemicalfun-0.1.8-py3-none-any.whl size=247730 sha256=22e3c62fae51eac2e0187f6338a614622f5e5197e9f2d20cecf90a442b3b065d Stored in directory: /tmp/pip-ephem-wheel-cache-bbbo7i7h/wheels/bd/ef/7c/33b2886d64027337523ce813a373eec606f7e2313494617cca Successfully built chemicalfun Installing collected packages: chemicalfun Successfully installed chemicalfun-0.1.8 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> chemicalfun-0.1.8_4 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for chemicalfun-0.1.8_4 ===> Generating temporary packing list [ 50% 1/2] cd /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/chemicalfun && /usr/local/bin/cmake -E copy /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/PyChemicalFun/PyChemicalFun.cpython-311.so /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/chemicalfun/PyChemicalFun.cpython-311.so && /usr/local/bin/python3.11 -m pip install --root /wrkdirs/usr/ports/science/chemicalfun/work/stage --prefix /usr/local --ignore-installed . Processing /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/chemicalfun Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Building wheels for collected packages: chemicalfun Building wheel for chemicalfun (setup.py): started Building wheel for chemicalfun (setup.py): finished with status 'done' Created wheel for chemicalfun: filename=chemicalfun-0.1.8-py3-none-any.whl size=247730 sha256=8240b2004ee370d50294a235608a5d55e8901af4b9d76d566d6419cec049021e Stored in directory: /tmp/pip-ephem-wheel-cache-bi2riwzd/wheels/bd/ef/7c/33b2886d64027337523ce813a373eec606f7e2313494617cca Successfully built chemicalfun Installing collected packages: chemicalfun Successfully installed chemicalfun-0.1.8 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv [ 50% 2/2] cd /wrkdirs/usr/ports/science/chemicalfun/work/.build && /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/lib/cmake/ChemicalFun/ChemicalFunTargets.cmake -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/lib/cmake/ChemicalFun/ChemicalFunTargets-release.cmake -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/lib/cmake/ChemicalFun/ChemicalFunConfig.cmake -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/lib/cmake/ChemicalFun/ChemicalFunConfigVersion.cmake -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/lib/libChemicalFun.so -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/FormulaParser.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/ReactionsGenerator.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/FormulaParser -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/FormulaParser/MoietyParser.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/FormulaParser/ChemicalFormulaParser.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/FormulaParser/ChemicalData.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/ReactionsGenerator -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/ReactionsGenerator/Reaction.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/ReactionsGenerator/ChemicalReactions.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/ReactionsGenerator/Combiner.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/ReactionsGenerator/MatrixUtils.h -- Installing: /wrkdirs/usr/ports/science/chemicalfun/work/stage/usr/local/include/ChemicalFun/ReactionsGenerator/Generator.h Processing /wrkdirs/usr/ports/science/chemicalfun/work/.build/python/chemicalfun Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Building wheels for collected packages: chemicalfun Building wheel for chemicalfun (setup.py): started Building wheel for chemicalfun (setup.py): finished with status 'done' Created wheel for chemicalfun: filename=chemicalfun-0.1.8-py3-none-any.whl size=247730 sha256=eaad7576ceecedfed22245a1e96f0652cca7946d6c01b4e913b1fc46a78e2b0f Stored in directory: /tmp/pip-ephem-wheel-cache-lg31nl3t/wheels/bd/ef/7c/33b2886d64027337523ce813a373eec606f7e2313494617cca Successfully built chemicalfun Installing collected packages: chemicalfun Successfully installed chemicalfun-0.1.8 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-01-23T17:47:47+0000' 'PKG_NOTE_ports_top_git_hash=076a295eb33c' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=b2cea6a8b1c6' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for chemicalfun-0.1.8_4 ===> Building chemicalfun-0.1.8_4 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for chemicalfun-0.1.8_4 build of science/chemicalfun | chemicalfun-0.1.8_4 ended at Fri Jan 23 12:48:54 EST 2026 build time: 00:01:10