=>> Building biology/bwa build started at Tue Jan 20 14:28:52 EST 2026 port directory: /usr/ports/biology/bwa package name: bwa-0.7.19 building for: FreeBSD pkg.DaveG.ca 14.3-RELEASE-p7 FreeBSD 14.3-RELEASE-p7 1403000 amd64 maintained by: alven@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 973 Aug 6 08:11 /usr/ports/biology/bwa/Makefile Ports top last git commit: 076a295eb33c Ports top unclean checkout: no Port dir last git commit: 7e77fc75a1d3 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1403000 Job Id: 12 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1403000 UNAME_v=FreeBSD 14.3-RELEASE-p7 1403000 UNAME_r=14.3-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/12/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_14_3_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- alven@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=/usr/local/bin/gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/bwa/work/.cache HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/bwa/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/bwa/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/bwa/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/bwa/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/bwa/work/.cache HOME=/wrkdirs/usr/ports/biology/bwa/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/bwa/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/bwa/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=14.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.42.0 PERL_VER=5.42 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.42 DOCSDIR="share/doc/bwa" EXAMPLESDIR="share/examples/bwa" DATADIR="share/bwa" WWWDIR="www/bwa" ETCDIR="etc/bwa" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/bwa DOCSDIR=/usr/local/share/doc/bwa EXAMPLESDIR=/usr/local/share/examples/bwa WWWDIR=/usr/local/www/bwa ETCDIR=/usr/local/etc/bwa --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> bwa-0.7.19 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.5.1.pkg [pkg.DaveG.ca] Installing pkg-2.5.1... [pkg.DaveG.ca] Extracting pkg-2.5.1: .......... done ===> bwa-0.7.19 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of bwa-0.7.19 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by bwa-0.7.19 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by bwa-0.7.19 for building => SHA256 Checksum OK for lh3-bwa-v0.7.19_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by bwa-0.7.19 for building ===> Extracting for bwa-0.7.19 => SHA256 Checksum OK for lh3-bwa-v0.7.19_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for bwa-0.7.19 ===> Applying FreeBSD patches for bwa-0.7.19 from /usr/ports/biology/bwa/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> bwa-0.7.19 depends on package: simde>0 - not found ===> Installing existing package /packages/All/simde-0.8.2.pkg [pkg.DaveG.ca] Installing simde-0.8.2... [pkg.DaveG.ca] Extracting simde-0.8.2: .......... done ===> bwa-0.7.19 depends on package: simde>0 - found ===> Returning to build of bwa-0.7.19 ===> bwa-0.7.19 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [pkg.DaveG.ca] Installing gmake-4.4.1... [pkg.DaveG.ca] `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] Extracting gmake-4.4.1: .......... done ===> bwa-0.7.19 depends on package: gmake>=4.4.1 - found ===> Returning to build of bwa-0.7.19 ===> bwa-0.7.19 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> bwa-0.7.19 depends on file: /usr/local/bin/ccache - found ===> Returning to build of bwa-0.7.19 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for bwa-0.7.19 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for bwa-0.7.19 cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include utils.c -o utils.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include kthread.c -o kthread.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include kstring.c -o kstring.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include ksw.c -o ksw.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwt.c -o bwt.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bntseq.c -o bntseq.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwa.c -o bwa.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwamem.c -o bwamem.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwamem_pair.c -o bwamem_pair.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwamem_extra.c -o bwamem_extra.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include malloc_wrap.c -o malloc_wrap.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include QSufSort.c -o QSufSort.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwt_gen.c -o bwt_gen.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include rope.c -o rope.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include rle.c -o rle.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include is.c -o is.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwtindex.c -o bwtindex.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwashm.c -o bwashm.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwase.c -o bwase.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwaseqio.c -o bwaseqio.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwtgap.c -o bwtgap.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwtaln.c -o bwtaln.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bamlite.c -o bamlite.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwape.c -o bwape.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include kopen.c -o kopen.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include pemerge.c -o pemerge.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include maxk.c -o maxk.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwtsw2_core.c -o bwtsw2_core.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwtsw2_main.c -o bwtsw2_main.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwtsw2_aux.c -o bwtsw2_aux.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwt_lite.c -o bwt_lite.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwtsw2_chain.c -o bwtsw2_chain.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include fastmap.c -o fastmap.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include bwtsw2_pair.c -o bwtsw2_pair.o cc -c -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS -isystem /usr/local/include main.c -o main.o bwamem.c:213:1: warning: implicit truncation from 'int' to a one-bit wide bit-field changes value from 1 to -1 [-Wsingle-bit-bitfield-constant-conversion] 213 | KBTREE_INIT(chn, mem_chain_t, chain_cmp) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./kbtree.h:366:2: note: expanded from macro 'KBTREE_INIT' 366 | __KB_PUT(name, key_t, __cmp) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./kbtree.h:218:32: note: expanded from macro '__KB_PUT' 218 | b->root = s; s->is_internal = 1; s->n = 0; \ | ^ ~ 1 warning generated. ar -csru libbwa.a utils.o kthread.o kstring.o ksw.o bwt.o bntseq.o bwa.o bwamem.o bwamem_pair.o bwamem_extra.o malloc_wrap.o QSufSort.o bwt_gen.o rope.o rle.o is.o bwtindex.o cc -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing bwashm.o bwase.o bwaseqio.o bwtgap.o bwtaln.o bamlite.o bwape.o kopen.o pemerge.o maxk.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o fastmap.o bwtsw2_pair.o main.o -o bwa -L. -lbwa -lm -lz -lpthread =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> bwa-0.7.19 depends on package: perl5>=5.42.r<5.43 - not found ===> Installing existing package /packages/All/perl5-5.42.0_1.pkg [pkg.DaveG.ca] Installing perl5-5.42.0_1... [pkg.DaveG.ca] Extracting perl5-5.42.0_1: .......... done ===> bwa-0.7.19 depends on package: perl5>=5.42.r<5.43 - found ===> Returning to build of bwa-0.7.19 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for bwa-0.7.19 ===> Generating temporary packing list install -s -m 555 /wrkdirs/usr/ports/biology/bwa/work/bwa-0.7.19/bwa /wrkdirs/usr/ports/biology/bwa/work/stage/usr/local/bin install -m 555 /wrkdirs/usr/ports/biology/bwa/work/bwa-0.7.19/*.pl /wrkdirs/usr/ports/biology/bwa/work/stage/usr/local/bin install -m 444 /wrkdirs/usr/ports/biology/bwa/work/bwa-0.7.19/*.1 /wrkdirs/usr/ports/biology/bwa/work/stage/usr/local/share/man/man1 ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-01-20T19:28:52+0000' 'PKG_NOTE_ports_top_git_hash=076a295eb33c' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=7e77fc75a1d3' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for bwa-0.7.19 ===> Building bwa-0.7.19 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for bwa-0.7.19 build of biology/bwa | bwa-0.7.19 ended at Tue Jan 20 14:29:11 EST 2026 build time: 00:00:21