=>> Building biology/babel build started at Thu Dec 11 17:12:46 EST 2025 port directory: /usr/ports/biology/babel package name: babel-1.6_4 building for: FreeBSD pkg.DaveG.ca 13.5-RELEASE-p7 FreeBSD 13.5-RELEASE-p7 1305000 amd64 maintained by: ports@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 964 Aug 27 2024 /usr/ports/biology/babel/Makefile Ports top last git commit: 62d8b1999233 Ports top unclean checkout: no Port dir last git commit: bf70e962a370 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1305000 Job Id: 01 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1305000 UNAME_v=FreeBSD 13.5-RELEASE-p7 1305000 UNAME_r=13.5-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/01/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_13_5_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_13_5_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for babel-1.6_4: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- ports@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/babel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/babel/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/babel/work/.cache HOME=/wrkdirs/usr/ports/biology/babel/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/babel/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/babel/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/babel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/babel/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/babel/work/.cache HOME=/wrkdirs/usr/ports/biology/babel/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/babel/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/babel/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" OSREL=13.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/babel" EXAMPLESDIR="share/examples/babel" DATADIR="share/babel" WWWDIR="www/babel" ETCDIR="etc/babel" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/babel DOCSDIR=/usr/local/share/doc/babel EXAMPLESDIR=/usr/local/share/examples/babel WWWDIR=/usr/local/www/babel ETCDIR=/usr/local/etc/babel --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> NOTICE: The babel port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> babel-1.6_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.4.2_1.pkg [pkg.DaveG.ca] Installing pkg-2.4.2_1... [pkg.DaveG.ca] Extracting pkg-2.4.2_1: .......... done ===> babel-1.6_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of babel-1.6_4 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> NOTICE: The babel port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> Fetching all distfiles required by babel-1.6_4 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> NOTICE: The babel port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> Fetching all distfiles required by babel-1.6_4 for building => SHA256 Checksum OK for babel-1.6.tar.Z. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> NOTICE: The babel port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> Fetching all distfiles required by babel-1.6_4 for building ===> Extracting for babel-1.6_4 => SHA256 Checksum OK for babel-1.6.tar.Z. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for babel-1.6_4 ===> Applying FreeBSD patches for babel-1.6_4 from /usr/ports/biology/babel/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> babel-1.6_4 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> babel-1.6_4 depends on file: /usr/local/bin/ccache - found ===> Returning to build of babel-1.6_4 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for babel-1.6_4 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for babel-1.6_4 --- addh.o --- --- addh2.o --- --- aromatic.o --- --- assbnd.o --- --- asstypes.o --- --- block.o --- --- bndord.o --- --- bo.o --- --- buildct.o --- --- combine.o --- --- convert.o --- --- delatms.o --- --- delh2o.o --- --- filesrch.o --- --- fileutil.o --- --- gastchg.o --- --- htoend.o --- --- int2cart.o --- --- intcart.o --- --- menus.o --- --- miniums.o --- --- molwt.o --- --- nodummy.o --- --- orient.o --- --- precip.o --- --- printbad.o --- --- progress.o --- --- rdalch.o --- --- rdampout.o --- --- rdbalst.o --- --- rdbgf.o --- --- rdboogie.o --- --- rdc3d.o --- --- rdcacao.o --- --- rdcadpac.o --- --- rdcharmm.o --- --- rdcsd.o --- --- rddock.o --- --- rddpdb.o --- --- rdelmnts.o --- --- rdfdat.o --- --- rdfeat.o --- --- rdfract.o --- --- rdg96.o --- --- rdgamout.o --- --- rdgauout.o --- --- rdgzmat.o --- --- rdhin.o --- --- rdinsite.o --- --- rdint.o --- --- rdirc.o --- --- rdisis.o --- --- rdm3d.o --- --- rdmacmod.o --- --- rdmacmol.o --- --- rdmdl.o --- --- rdmicro.o --- --- rdmm2.o --- --- rdmm2in.o --- --- rdmm3.o --- --- rdmolen.o --- --- rdmopac.o --- --- rdmopcrt.o --- --- rdpcmod.o --- --- addh.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c addh.c -o addh.o --- addh2.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c addh2.c -o addh2.o --- aromatic.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c aromatic.c -o aromatic.o --- assbnd.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c assbnd.c -o assbnd.o --- asstypes.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c asstypes.c -o asstypes.o --- block.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c block.c -o block.o --- bndord.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c bndord.c -o bndord.o --- bo.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c bo.c -o bo.o --- buildct.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c buildct.c -o buildct.o --- combine.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c combine.c -o combine.o --- convert.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c convert.c -o convert.o --- delatms.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c delatms.c -o delatms.o --- delh2o.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c delh2o.c -o delh2o.o --- filesrch.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c filesrch.c -o filesrch.o --- fileutil.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c fileutil.c -o fileutil.o --- gastchg.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c gastchg.c -o gastchg.o --- htoend.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c htoend.c -o htoend.o --- int2cart.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c int2cart.c -o int2cart.o --- intcart.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c intcart.c -o intcart.o --- menus.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c menus.c -o menus.o --- miniums.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c miniums.c -o miniums.o --- molwt.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c molwt.c -o molwt.o --- nodummy.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c nodummy.c -o nodummy.o --- orient.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c orient.c -o orient.o --- precip.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c precip.c -o precip.o --- printbad.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c printbad.c -o printbad.o --- progress.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c progress.c -o progress.o --- rdalch.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdalch.c -o rdalch.o --- rdampout.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdampout.c -o rdampout.o --- rdbalst.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdbalst.c -o rdbalst.o --- rdbgf.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdbgf.c -o rdbgf.o --- rdboogie.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdboogie.c -o rdboogie.o --- rdc3d.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdc3d.c -o rdc3d.o --- rdcacao.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdcacao.c -o rdcacao.o --- rdcadpac.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdcadpac.c -o rdcadpac.o --- rdcharmm.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdcharmm.c -o rdcharmm.o --- rdcsd.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdcsd.c -o rdcsd.o --- rddock.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rddock.c -o rddock.o --- rddpdb.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rddpdb.c -o rddpdb.o --- rdelmnts.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdelmnts.c -o rdelmnts.o --- rdfdat.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdfdat.c -o rdfdat.o --- rdfeat.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdfeat.c -o rdfeat.o --- rdfract.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdfract.c -o rdfract.o --- rdg96.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdg96.c -o rdg96.o --- rdgamout.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdgamout.c -o rdgamout.o --- rdgauout.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdgauout.c -o rdgauout.o --- rdgzmat.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdgzmat.c -o rdgzmat.o --- rdhin.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdhin.c -o rdhin.o --- rdinsite.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdinsite.c -o rdinsite.o --- rdint.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdint.c -o rdint.o --- rdirc.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdirc.c -o rdirc.o --- rdisis.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdisis.c -o rdisis.o --- rdm3d.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdm3d.c -o rdm3d.o --- rdmacmod.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdmacmod.c -o rdmacmod.o --- rdmacmol.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdmacmol.c -o rdmacmol.o --- rdmdl.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdmdl.c -o rdmdl.o --- rdmicro.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdmicro.c -o rdmicro.o --- rdmm2.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdmm2.c -o rdmm2.o --- rdmm3.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdmm3.c -o rdmm3.o --- rdmolen.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdmolen.c -o rdmolen.o --- rdmm2in.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdmm2in.c -o rdmm2in.o --- rdmopac.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdmopac.c -o rdmopac.o --- rdmopcrt.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdmopcrt.c -o rdmopcrt.o --- rdpcmod.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdpcmod.c -o rdpcmod.o --- rdpdb.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdpdb.c -o rdpdb.o --- rdprep.o --- --- rdpsgout.o --- --- rdprep.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdprep.c -o rdprep.o --- rdpsgout.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdpsgout.c -o rdpsgout.o --- rdmopac.o --- rdmopac.c:128:32: warning: format specifies type 'float *' but the argument has type 'double *' [-Wformat] 128 | sscanf(mop_line,"%*s%*s%f",&Charge(i)); | ~~ ^~~~~~~~~~ | %lf 1 warning generated. --- rdpsgvin.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdpsgvin.c -o rdpsgvin.o --- rdquanta.o --- --- rdschak.o --- --- rdpcmod.o --- rdpcmod.c:75:20: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare] 75 | while ((start != '\0') && (!done)) | ^~~~ | (void *)0 1 warning generated. --- rdquanta.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdquanta.c -o rdquanta.o --- rdschak.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdschak.c -o rdschak.o --- rdshelx.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdshelx.c -o rdshelx.o --- rdsmiles.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdsmiles.c -o rdsmiles.o --- rdspart.o --- --- rdspmm.o --- --- rdspart.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdspart.c -o rdspart.o --- rdspmm.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdspmm.c -o rdspmm.o --- rdspsemi.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdspsemi.c -o rdspsemi.o --- rdsybmol.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdsybmol.c -o rdsybmol.o --- rdsybyl.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdsybyl.c -o rdsybyl.o --- rdtypes.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdtypes.c -o rdtypes.o --- rdunichm.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdunichm.c -o rdunichm.o --- convert.o --- convert.c:263:12: warning: comparison of array 'target' not equal to a null pointer is always true [-Wtautological-pointer-compare] 263 | if (target != NULL) | ^~~~~~ ~~~~ convert.c:387:28: warning: passing arguments to a function without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 387 | result = ReaderFunction(infile,mol); | ^ convert.c:401:43: warning: data argument not used by format string [-Wformat-extra-args] 401 | fprintf(stderr,"Structure %5d ",in_count,Multi); | ~~~~~~~~~~~~~~~~ ^ ./bblmacs.h:153:29: note: expanded from macro 'Multi' 153 | #define Multi mol->control->multi | ^ convert.c:509:30: warning: passing arguments to a function without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 509 | result = WriterFunction(outfile,mol); | ^ convert.c:595:5: warning: add explicit braces to avoid dangling else [-Wdangling-else] 595 | else | ^ convert.c:699:30: warning: passing arguments to a function without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 699 | result = master[i].func(stdout,mol); | ^ 6 warnings generated. --- rdwiz.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdwiz.c -o rdwiz.o --- rdxed.o --- --- rdmdl.o --- rdmdl.c:65:19: warning: format specifies type 'long *' but the argument has type 'int *' [-Wformat] 63 | if (sscanf(the_line,"%lf%lf%lf%s%ld%ld%ld%ld%ld", | ~~~ | %d 64 | &dummyd,&dummyd,&dummyd,dummyc, 65 | &dummyi,&dummyi,&dummyi,&dummyi,&dummyi,&dummyi) == 9) | ^~~~~~~ rdmdl.c:65:27: warning: format specifies type 'long *' but the argument has type 'int *' [-Wformat] 63 | if (sscanf(the_line,"%lf%lf%lf%s%ld%ld%ld%ld%ld", | ~~~ | %d 64 | &dummyd,&dummyd,&dummyd,dummyc, 65 | &dummyi,&dummyi,&dummyi,&dummyi,&dummyi,&dummyi) == 9) | ^~~~~~~ rdmdl.c:65:35: warning: format specifies type 'long *' but the argument has type 'int *' [-Wformat] --- rdxed.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdxed.c -o rdxed.o --- rdmdl.o --- 63 | if (sscanf(the_line,"%lf%lf%lf%s%ld%ld%ld%ld%ld", | ~~~ | %d 64 | &dummyd,&dummyd,&dummyd,dummyc, 65 | &dummyi,&dummyi,&dummyi,&dummyi,&dummyi,&dummyi) == 9) | ^~~~~~~ rdmdl.c:65:43: warning: format specifies type 'long *' but the argument has type 'int *' [-Wformat] 63 | if (sscanf(the_line,"%lf%lf%lf%s%ld%ld%ld%ld%ld", | ~~~ | %d 64 | &dummyd,&dummyd,&dummyd,dummyc, 65 | &dummyi,&dummyi,&dummyi,&dummyi,&dummyi,&dummyi) == 9) | ^~~~~~~ rdmdl.c:65:51: warning: format specifies type 'long *' but the argument has type 'int *' [-Wformat] 63 | if (sscanf(the_line,"%lf%lf%lf%s%ld%ld%ld%ld%ld", | ~~~ | %d 64 | &dummyd,&dummyd,&dummyd,dummyc, 65 | &dummyi,&dummyi,&dummyi,&dummyi,&dummyi,&dummyi) == 9) | ^~~~~~~ rdmdl.c:65:59: warning: data argument not used by format string [-Wformat-extra-args] 63 | if (sscanf(the_line,"%lf%lf%lf%s%ld%ld%ld%ld%ld", | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 | &dummyd,&dummyd,&dummyd,dummyc, 65 | &dummyi,&dummyi,&dummyi,&dummyi,&dummyi,&dummyi) == 9) | ^ 6 warnings generated. --- rdxyz.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rdxyz.c -o rdxyz.o --- renum.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c renum.c -o renum.o --- report.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c report.c -o report.o --- rings.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c rings.c -o rings.o --- asstypes.o --- asstypes.c:639:4: warning: add explicit braces to avoid dangling else [-Wdangling-else] 639 | else | ^ asstypes.c:659:4: warning: add explicit braces to avoid dangling else [-Wdangling-else] 659 | else | ^ asstypes.c:681:2: warning: add explicit braces to avoid dangling else [-Wdangling-else] 681 | else | ^ 3 warnings generated. --- ringutil.o --- --- sets.o --- --- ringutil.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c ringutil.c -o ringutil.o --- sets.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c sets.c -o sets.o --- smilesto.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c smilesto.c -o smilesto.o --- spline.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c spline.c -o spline.o --- strngutl.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c strngutl.c -o strngutl.o --- tokenst.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c tokenst.c -o tokenst.o --- tosmiles.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c tosmiles.c -o tosmiles.o --- tree.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c tree.c -o tree.o --- typbybo.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c typbybo.c -o typbybo.o --- umslist.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c umslist.c -o umslist.o --- utils.o --- --- vectors.o --- --- wralch.o --- --- wrbalst.o --- --- utils.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c utils.c -o utils.o --- vectors.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c vectors.c -o vectors.o --- wralch.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wralch.c -o wralch.o --- wrbalst.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrbalst.c -o wrbalst.o --- wrbgf.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrbgf.c -o wrbgf.o --- wrbmin.o --- --- wrbox.o --- --- wrbmin.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrbmin.c -o wrbmin.o --- wrbox.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrbox.c -o wrbox.o --- wrc3d.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrc3d.c -o wrc3d.o --- wrcacao.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrcacao.c -o wrcacao.o --- wrcache.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrcache.c -o wrcache.o --- wrcacint.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrcacint.c -o wrcacint.o --- wrchdrw.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrchdrw.c -o wrchdrw.o --- wrcontmp.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrcontmp.c -o wrcontmp.o --- wrcsr.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrcsr.c -o wrcsr.o --- wrcssr.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrcssr.c -o wrcssr.o --- wrdock.o --- --- wrdpdb.o --- --- rdsmiles.o --- rdsmiles.c:14:7: warning: address of array 'smiles_string' will always evaluate to 'true' [-Wpointer-bool-conversion] 14 | if (smiles_string) | ~~ ^~~~~~~~~~~~~ 1 warning generated. --- wrdock.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrdock.c -o wrdock.o --- wrfeat.o --- --- wrfh.o --- --- wrg96.o --- --- wrgamess.o --- --- wrgau.o --- --- wrfh.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrfh.c -o wrfh.o --- wrdpdb.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrdpdb.c -o wrdpdb.o --- wrg96.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrg96.c -o wrg96.o --- wrfeat.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrfeat.c -o wrfeat.o --- wrgaucrt.o --- --- wrhin.o --- --- wricon.o --- --- wrint.o --- --- rdquanta.o --- rdquanta.c:312:1: warning: non-void function does not return a value in all control paths [-Wreturn-type] 312 | } | ^ 1 warning generated. --- wrhin.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrhin.c -o wrhin.o --- wricon.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wricon.c -o wricon.o --- wrgau.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrgau.c -o wrgau.o --- wrint.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrint.c -o wrint.o --- wrgaucrt.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrgaucrt.c -o wrgaucrt.o --- wrgamess.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrgamess.c -o wrgamess.o --- wrisis.o --- --- wrm3d.o --- --- wrmaccs.o --- --- wrmacmod.o --- --- wrmcmol.o --- --- wrmdl.o --- --- wrisis.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrisis.c -o wrisis.o --- wrm3d.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrm3d.c -o wrm3d.o --- wrmaccs.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrmaccs.c -o wrmaccs.o --- wrmacmod.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrmacmod.c -o wrmacmod.o --- wrmicro.o --- --- wrmdl.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrmdl.c -o wrmdl.o --- wrmcmol.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrmcmol.c -o wrmcmol.o --- wrmicro.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrmicro.c -o wrmicro.o --- wrmimic.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrmimic.c -o wrmimic.o --- wrmiv.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrmiv.c -o wrmiv.o --- wrmm2.o --- --- wrmm3.o --- --- wrmm2.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrmm2.c -o wrmm2.o --- wrmm3.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrmm3.c -o wrmm3.o --- spline.o --- spline.c:39:30: warning: passing arguments to a function without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 39 | result = ReaderFunction(file1,mol); | ^ spline.c:40:30: warning: passing arguments to a function without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 40 | result = ReaderFunction(file1,mol2); | ^ spline.c:52:30: warning: passing arguments to a function without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 52 | result = ReaderFunction(file1,mol2); | ^ 3 warnings generated. --- rdxed.o --- rdxed.c:62:5: warning: format specifies type 'double *' but the argument has type 'float *' [-Wformat] 56 | sscanf(the_line,"%6s%15lf%15lf%15lf%6s%12lf", | ~~~~~ | %12f 57 | mass_str, 58 | &X(i), 59 | &Y(i), 60 | &Z(i), 61 | temp_type, 62 | &chge); | ^~~~~ 1 warning generated. --- wrmopac.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrmopac.c -o wrmopac.o --- wrpcmod.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrpcmod.c -o wrpcmod.o --- wrpdb.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrpdb.c -o wrpdb.o --- wrpsgv.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrpsgv.c -o wrpsgv.o --- wrpsgvz.o --- --- rdshelx.o --- rdshelx.c:43:7: warning: add explicit braces to avoid dangling else [-Wdangling-else] 43 | else | ^ 1 warning generated. --- wrpsgvz.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrpsgvz.c -o wrpsgvz.o --- wrsmiles.o --- --- wrspart.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrspart.c -o wrspart.o --- wrsmiles.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrsmiles.c -o wrsmiles.o --- wrsybmol.o --- --- wrsybyl.o --- --- wrtinker.o --- --- wrtorlst.o --- --- wrsybyl.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrsybyl.c -o wrsybyl.o --- umslist.o --- umslist.c:76:11: warning: passing arguments to a function without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 76 | reader(fp,mol); | ^ umslist.c:86:11: warning: passing arguments to a function without a prototype is deprecated in all versions of C and is not supported in C23 [-Wdeprecated-non-prototype] 86 | writer(fp,list); | ^ 2 warnings generated. --- wrsybmol.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrsybmol.c -o wrsybmol.o --- wrtinker.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrtinker.c -o wrtinker.o --- wrunichm.o --- --- wrwiz.o --- --- wrxed.o --- --- wrxyz.o --- --- wrtorlst.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrtorlst.c -o wrtorlst.o --- wrxed.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrxed.c -o wrxed.o --- wrunichm.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrunichm.c -o wrunichm.o --- wrwiz.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrwiz.c -o wrwiz.o --- wrxyz.o --- cc -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -c wrxyz.c -o wrxyz.o --- sets.o --- sets.c:211:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 211 | LowBit(s,bit); | ^~~~~~~~~~~~~ ./bbltyp.h:342:13: note: expanded from macro 'LowBit' 342 | if (m = (set & 0x0000ffff)) {set = m; bit -= 16;}\ | ~~^~~~~~~~~~~~~~~~~~~~ sets.c:211:10: note: place parentheses around the assignment to silence this warning ./bbltyp.h:342:13: note: expanded from macro 'LowBit' 342 | if (m = (set & 0x0000ffff)) {set = m; bit -= 16;}\ | ^ sets.c:211:10: note: use '==' to turn this assignment into an equality comparison ./bbltyp.h:342:13: note: expanded from macro 'LowBit' 342 | if (m = (set & 0x0000ffff)) {set = m; bit -= 16;}\ | ^ sets.c:211:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 211 | LowBit(s,bit); | ^~~~~~~~~~~~~ ./bbltyp.h:343:13: note: expanded from macro 'LowBit' 343 | if (m = (set & 0x00ff00ff)) {set = m; bit -= 8;}\ | ~~^~~~~~~~~~~~~~~~~~~~ sets.c:211:10: note: place parentheses around the assignment to silence this warning ./bbltyp.h:343:13: note: expanded from macro 'LowBit' 343 | if (m = (set & 0x00ff00ff)) {set = m; bit -= 8;}\ | ^ sets.c:211:10: note: use '==' to turn this assignment into an equality comparison ./bbltyp.h:343:13: note: expanded from macro 'LowBit' 343 | if (m = (set & 0x00ff00ff)) {set = m; bit -= 8;}\ | ^ sets.c:211:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 211 | LowBit(s,bit); | ^~~~~~~~~~~~~ ./bbltyp.h:344:13: note: expanded from macro 'LowBit' 344 | if (m = (set & 0x0f0f0f0f)) {set = m; bit -= 4;}\ | ~~^~~~~~~~~~~~~~~~~~~~ sets.c:211:10: note: place parentheses around the assignment to silence this warning ./bbltyp.h:344:13: note: expanded from macro 'LowBit' 344 | if (m = (set & 0x0f0f0f0f)) {set = m; bit -= 4;}\ | ^ sets.c:211:10: note: use '==' to turn this assignment into an equality comparison ./bbltyp.h:344:13: note: expanded from macro 'LowBit' 344 | if (m = (set & 0x0f0f0f0f)) {set = m; bit -= 4;}\ | ^ sets.c:211:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 211 | LowBit(s,bit); | ^~~~~~~~~~~~~ ./bbltyp.h:345:13: note: expanded from macro 'LowBit' 345 | if (m = (set & 0x33333333)) {set = m; bit -= 2;}\ | ~~^~~~~~~~~~~~~~~~~~~~ sets.c:211:10: note: place parentheses around the assignment to silence this warning ./bbltyp.h:345:13: note: expanded from macro 'LowBit' 345 | if (m = (set & 0x33333333)) {set = m; bit -= 2;}\ | ^ sets.c:211:10: note: use '==' to turn this assignment into an equality comparison ./bbltyp.h:345:13: note: expanded from macro 'LowBit' 345 | if (m = (set & 0x33333333)) {set = m; bit -= 2;}\ | ^ sets.c:211:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 211 | LowBit(s,bit); | ^~~~~~~~~~~~~ ./bbltyp.h:346:13: note: expanded from macro 'LowBit' 346 | if (m = (set & 0x55555555)) {set = m; bit -= 1;}}}\ | ~~^~~~~~~~~~~~~~~~~~~~ sets.c:211:10: note: place parentheses around the assignment to silence this warning ./bbltyp.h:346:13: note: expanded from macro 'LowBit' 346 | if (m = (set & 0x55555555)) {set = m; bit -= 1;}}}\ | ^ sets.c:211:10: note: use '==' to turn this assignment into an equality comparison ./bbltyp.h:346:13: note: expanded from macro 'LowBit' 346 | if (m = (set & 0x55555555)) {set = m; bit -= 1;}}}\ | ^ sets.c:223:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 223 | LowBit(s, bit); | ^~~~~~~~~~~~~~ ./bbltyp.h:342:13: note: expanded from macro 'LowBit' 342 | if (m = (set & 0x0000ffff)) {set = m; bit -= 16;}\ | ~~^~~~~~~~~~~~~~~~~~~~ sets.c:223:10: note: place parentheses around the assignment to silence this warning ./bbltyp.h:342:13: note: expanded from macro 'LowBit' 342 | if (m = (set & 0x0000ffff)) {set = m; bit -= 16;}\ | ^ sets.c:223:10: note: use '==' to turn this assignment into an equality comparison ./bbltyp.h:342:13: note: expanded from macro 'LowBit' 342 | if (m = (set & 0x0000ffff)) {set = m; bit -= 16;}\ | ^ sets.c:223:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 223 | LowBit(s, bit); | ^~~~~~~~~~~~~~ ./bbltyp.h:343:13: note: expanded from macro 'LowBit' 343 | if (m = (set & 0x00ff00ff)) {set = m; bit -= 8;}\ | ~~^~~~~~~~~~~~~~~~~~~~ sets.c:223:10: note: place parentheses around the assignment to silence this warning ./bbltyp.h:343:13: note: expanded from macro 'LowBit' 343 | if (m = (set & 0x00ff00ff)) {set = m; bit -= 8;}\ | ^ sets.c:223:10: note: use '==' to turn this assignment into an equality comparison ./bbltyp.h:343:13: note: expanded from macro 'LowBit' 343 | if (m = (set & 0x00ff00ff)) {set = m; bit -= 8;}\ | ^ sets.c:223:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 223 | LowBit(s, bit); | ^~~~~~~~~~~~~~ ./bbltyp.h:344:13: note: expanded from macro 'LowBit' 344 | if (m = (set & 0x0f0f0f0f)) {set = m; bit -= 4;}\ | ~~^~~~~~~~~~~~~~~~~~~~ sets.c:223:10: note: place parentheses around the assignment to silence this warning ./bbltyp.h:344:13: note: expanded from macro 'LowBit' 344 | if (m = (set & 0x0f0f0f0f)) {set = m; bit -= 4;}\ | ^ sets.c:223:10: note: use '==' to turn this assignment into an equality comparison ./bbltyp.h:344:13: note: expanded from macro 'LowBit' 344 | if (m = (set & 0x0f0f0f0f)) {set = m; bit -= 4;}\ | ^ sets.c:223:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 223 | LowBit(s, bit); | ^~~~~~~~~~~~~~ ./bbltyp.h:345:13: note: expanded from macro 'LowBit' 345 | if (m = (set & 0x33333333)) {set = m; bit -= 2;}\ | ~~^~~~~~~~~~~~~~~~~~~~ sets.c:223:10: note: place parentheses around the assignment to silence this warning ./bbltyp.h:345:13: note: expanded from macro 'LowBit' 345 | if (m = (set & 0x33333333)) {set = m; bit -= 2;}\ | ^ sets.c:223:10: note: use '==' to turn this assignment into an equality comparison ./bbltyp.h:345:13: note: expanded from macro 'LowBit' 345 | if (m = (set & 0x33333333)) {set = m; bit -= 2;}\ | ^ sets.c:223:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 223 | LowBit(s, bit); | ^~~~~~~~~~~~~~ ./bbltyp.h:346:13: note: expanded from macro 'LowBit' 346 | if (m = (set & 0x55555555)) {set = m; bit -= 1;}}}\ | ~~^~~~~~~~~~~~~~~~~~~~ sets.c:223:10: note: place parentheses around the assignment to silence this warning ./bbltyp.h:346:13: note: expanded from macro 'LowBit' 346 | if (m = (set & 0x55555555)) {set = m; bit -= 1;}}}\ | ^ sets.c:223:10: note: use '==' to turn this assignment into an equality comparison ./bbltyp.h:346:13: note: expanded from macro 'LowBit' 346 | if (m = (set & 0x55555555)) {set = m; bit -= 1;}}}\ | ^ 10 warnings generated. --- smilesto.o --- smilesto.c:82:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 82 | else if(bord = strchr(bondchr, smiles[i])) state = (enum state_typ) next[state][Tok_Bond]; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ smilesto.c:82:20: note: place parentheses around the assignment to silence this warning 82 | else if(bord = strchr(bondchr, smiles[i])) state = (enum state_typ) next[state][Tok_Bond]; | ^ | ( ) smilesto.c:82:20: note: use '==' to turn this assignment into an equality comparison 82 | else if(bord = strchr(bondchr, smiles[i])) state = (enum state_typ) next[state][Tok_Bond]; | ^ | == 1 warning generated. --- wrcsr.o --- wrcsr.c:16:1: warning: non-void function does not return a value [-Wreturn-type] 16 | } | ^ 1 warning generated. --- wrsmiles.o --- wrsmiles.c:45:49: warning: format specifies type 'char *' but the argument has type 'int' [-Wformat] 45 | printf("OUT OF MEMORY AT %s %s \n",__FILE__,__LINE__); | ~~ ^~~~~~~~ | %d :102:1: note: expanded from here 102 | 45 | ^~ 1 warning generated. --- wrtorlst.o --- wrtorlst.c:36:59: warning: format specifies type 'char *' but the argument has type 'int' [-Wformat] 36 | printf("Memory Allocation Error at %s %s \n",__FILE__,__LINE__); | ~~ ^~~~~~~~ | %d :102:1: note: expanded from here 102 | 36 | ^~ wrtorlst.c:74:1: warning: non-void function does not return a value in all control paths [-Wreturn-type] 74 | } | ^ 2 warnings generated. --- babel --- cc addh.o addh2.o aromatic.o assbnd.o asstypes.o block.o bndord.o bo.o buildct.o combine.o convert.o delatms.o delh2o.o filesrch.o fileutil.o gastchg.o htoend.o int2cart.o intcart.o menus.o miniums.o molwt.o nodummy.o orient.o precip.o printbad.o progress.o rdalch.o rdampout.o rdbalst.o rdbgf.o rdboogie.o rdc3d.o rdcacao.o rdcadpac.o rdcharmm.o rdcsd.o rddock.o rddpdb.o rdelmnts.o rdfdat.o rdfeat.o rdfract.o rdg96.o rdgamout.o rdgauout.o rdgzmat.o rdhin.o rdinsite.o rdint.o rdirc.o rdisis.o rdm3d.o rdmacmod.o rdmacmol.o rdmdl.o rdmicro.o rdmm2.o rdmm2in.o rdmm3.o rdmolen.o rdmopac.o rdmopcrt.o rdpcmod.o rdpdb.o rdprep.o rdpsgout.o rdpsgvin.o rdquanta.o rdschak.o rdshelx.o rdsmiles.o rdspart.o rdspmm.o rdspsemi.o rdsybmol.o rdsybyl.o rdtypes.o rdunichm.o rdwiz.o rdxed.o rdxyz.o renum.o report.o rings.o ringutil.o sets.o smilesto.o spline.o strngutl.o tokenst.o tosmiles.o tree.o typbybo.o umslist.o utils.o vectors.o wralch.o wrbalst.o wrbgf.o wrbmin.o wrbox.o wrc3d.o wrcacao.o wrcache.o wrcacint.o wrchdrw.o wrcontmp.o wrcsr.o wrcssr.o wrdock.o wrdpdb.o wrfeat.o wrfh.o wrg96.o wrgamess.o wrgau.o wrgaucrt.o wrhin.o wricon.o wrint.o wrisis.o wrm3d.o wrmaccs.o wrmacmod.o wrmcmol.o wrmdl.o wrmicro.o wrmimic.o wrmiv.o wrmm2.o wrmm3.o wrmopac.o wrpcmod.o wrpdb.o wrpsgv.o wrpsgvz.o wrsmiles.o wrspart.o wrsybmol.o wrsybyl.o wrtinker.o wrtorlst.o wrunichm.o wrwiz.o wrxed.o wrxyz.o -o babel -lm /usr/bin/sed -e 's%@PREFIX@%/usr/local%g' /usr/ports/biology/babel/files/babel.sh >/wrkdirs/usr/ports/biology/babel/work/babel-1.6/babel.sh =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for babel-1.6_4 ===> Generating temporary packing list install -s -m 555 /wrkdirs/usr/ports/biology/babel/work/babel-1.6/babel /wrkdirs/usr/ports/biology/babel/work/stage/usr/local/libexec install -m 555 /wrkdirs/usr/ports/biology/babel/work/babel-1.6/babel.sh /wrkdirs/usr/ports/biology/babel/work/stage/usr/local/bin/babel install -m 0644 /wrkdirs/usr/ports/biology/babel/work/babel-1.6/*.lis /wrkdirs/usr/ports/biology/babel/work/stage/usr/local/share/babel install -m 0644 /wrkdirs/usr/ports/biology/babel/work/babel-1.6/README.1ST /wrkdirs/usr/ports/biology/babel/work/stage/usr/local/share/doc/babel ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2025-12-11T22:12:46+0000' 'PKG_NOTE_ports_top_git_hash=62d8b1999233' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=bf70e962a370' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for babel-1.6_4 ===> Building babel-1.6_4 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for babel-1.6_4 build of biology/babel | babel-1.6_4 ended at Thu Dec 11 17:12:53 EST 2025 build time: 00:00:10