=>> Building science/antioch build started at Thu Jan 8 23:30:32 EST 2026 port directory: /usr/ports/science/antioch package name: antioch-0.4.0.156_14 building for: FreeBSD pkg.DaveG.ca 15.0-RELEASE-p1 FreeBSD 15.0-RELEASE-p1 1500068 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 1018 Aug 27 2024 /usr/ports/science/antioch/Makefile Ports top last git commit: 2d72fe63d004 Ports top unclean checkout: no Port dir last git commit: df17c9422768 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1500068 Job Id: 12 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500068 UNAME_v=FreeBSD 15.0-RELEASE-p1 1500068 UNAME_r=15.0-RELEASE-p1 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/12/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_15_0_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --disable-static --enable-eigen --with-eigen-include=/usr/local/include/eigen3 --enable-opencl --with-metaphysicl=/usr/local --with-viennacl=/usr/local/include --with-gsl=/usr/local --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=/usr/local/bin/gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/antioch/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/antioch/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/antioch/work/.cache HOME=/wrkdirs/usr/ports/science/antioch/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/antioch/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/antioch/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh DEFAULT_AUTOCONF=2.72 CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/antioch/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/antioch/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/antioch/work/.cache HOME=/wrkdirs/usr/ports/science/antioch/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/antioch/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/antioch/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DEFAULT_AUTOCONF=2.72 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 " CXXSTD=c++11 BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/antioch" EXAMPLESDIR="share/examples/antioch" DATADIR="share/antioch" WWWDIR="www/antioch" ETCDIR="etc/antioch" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/antioch DOCSDIR=/usr/local/share/doc/antioch EXAMPLESDIR=/usr/local/share/examples/antioch WWWDIR=/usr/local/www/antioch ETCDIR=/usr/local/etc/antioch --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> antioch-0.4.0.156_14 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.5.1.pkg [pkg.DaveG.ca] Installing pkg-2.5.1... [pkg.DaveG.ca] Extracting pkg-2.5.1: .......... done ===> antioch-0.4.0.156_14 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of antioch-0.4.0.156_14 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by antioch-0.4.0.156_14 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by antioch-0.4.0.156_14 for building => SHA256 Checksum OK for libantioch-antioch-v0.4.0-156-g90ffa43_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by antioch-0.4.0.156_14 for building ===> Extracting for antioch-0.4.0.156_14 => SHA256 Checksum OK for libantioch-antioch-v0.4.0-156-g90ffa43_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for antioch-0.4.0.156_14 ===> Applying FreeBSD patches for antioch-0.4.0.156_14 from /usr/ports/science/antioch/files =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> antioch-0.4.0.156_14 depends on file: /usr/local/include/metaphysicl/metaphysicl_version.h - not found ===> Installing existing package /packages/All/MetaPhysicL-1.3.3_1.pkg [pkg.DaveG.ca] Installing MetaPhysicL-1.3.3_1... [pkg.DaveG.ca] Extracting MetaPhysicL-1.3.3_1: .......... done ===> antioch-0.4.0.156_14 depends on file: /usr/local/include/metaphysicl/metaphysicl_version.h - found ===> Returning to build of antioch-0.4.0.156_14 ===> antioch-0.4.0.156_14 depends on file: /usr/local/include/viennacl/vector.hpp - not found ===> Installing existing package /packages/All/viennacl-1.7.1_6.pkg [pkg.DaveG.ca] Installing viennacl-1.7.1_6... [pkg.DaveG.ca] `-- Installing ocl-icd-2.3.4... [pkg.DaveG.ca] `-- Extracting ocl-icd-2.3.4: .......... done [pkg.DaveG.ca] `-- Installing opencl-3.0.19... [pkg.DaveG.ca] `-- Extracting opencl-3.0.19: .......... done [pkg.DaveG.ca] Extracting viennacl-1.7.1_6: .......... done ===== Message from ocl-icd-2.3.4: -- Set environment variale, i.e. OCL_ICD_VENDORDIR=/usr/local/etc/OpenCL/vendors ===== Message from viennacl-1.7.1_6: -- ===> NOTICE: The viennacl port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===> antioch-0.4.0.156_14 depends on file: /usr/local/include/viennacl/vector.hpp - found ===> Returning to build of antioch-0.4.0.156_14 ===> antioch-0.4.0.156_14 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.4.0_4.pkg [pkg.DaveG.ca] Installing eigen-3.4.0_4... [pkg.DaveG.ca] `-- Installing blas-3.12.1... [pkg.DaveG.ca] | `-- Installing gcc14-14.2.0_4... [pkg.DaveG.ca] | | `-- Installing binutils-2.44,1... [pkg.DaveG.ca] | | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] | | `-- Installing zstd-1.5.7_1... [pkg.DaveG.ca] | | `-- Extracting zstd-1.5.7_1: .......... done [pkg.DaveG.ca] | | `-- Extracting binutils-2.44,1: .......... done [pkg.DaveG.ca] | | `-- Installing gmp-6.3.0... [pkg.DaveG.ca] | | `-- Extracting gmp-6.3.0: .......... done [pkg.DaveG.ca] | | `-- Installing mpc-1.3.1_1... [pkg.DaveG.ca] | | `-- Installing mpfr-4.2.2,1... [pkg.DaveG.ca] | | `-- Extracting mpfr-4.2.2,1: .......... done [pkg.DaveG.ca] | | `-- Extracting mpc-1.3.1_1: ...... done [pkg.DaveG.ca] | `-- Extracting gcc14-14.2.0_4: .......... done [pkg.DaveG.ca] `-- Extracting blas-3.12.1: ..... done [pkg.DaveG.ca] `-- Installing lapack-3.12.1... [pkg.DaveG.ca] `-- Extracting lapack-3.12.1: .......... done [pkg.DaveG.ca] Extracting eigen-3.4.0_4: .......... done ===== Message from gcc14-14.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> antioch-0.4.0.156_14 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of antioch-0.4.0.156_14 ===> antioch-0.4.0.156_14 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [pkg.DaveG.ca] Installing gmake-4.4.1... [pkg.DaveG.ca] `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] Extracting gmake-4.4.1: .......... done ===> antioch-0.4.0.156_14 depends on package: gmake>=4.4.1 - found ===> Returning to build of antioch-0.4.0.156_14 ===> antioch-0.4.0.156_14 depends on package: autoconf>=2.72_1 - not found ===> Installing existing package /packages/All/autoconf-2.72_1.pkg [pkg.DaveG.ca] Installing autoconf-2.72_1... [pkg.DaveG.ca] `-- Installing autoconf-switch-20220527... [pkg.DaveG.ca] `-- Extracting autoconf-switch-20220527: ....... done [pkg.DaveG.ca] `-- Installing m4-1.4.20,1... [pkg.DaveG.ca] `-- Extracting m4-1.4.20,1: .......... done [pkg.DaveG.ca] `-- Installing perl5-5.42.0_1... [pkg.DaveG.ca] `-- Extracting perl5-5.42.0_1: .......... done [pkg.DaveG.ca] Extracting autoconf-2.72_1: .......... done ===> antioch-0.4.0.156_14 depends on package: autoconf>=2.72_1 - found ===> Returning to build of antioch-0.4.0.156_14 ===> antioch-0.4.0.156_14 depends on package: automake>=1.18.1 - not found ===> Installing existing package /packages/All/automake-1.18.1.pkg [pkg.DaveG.ca] Installing automake-1.18.1... [pkg.DaveG.ca] Extracting automake-1.18.1: .......... done ===> antioch-0.4.0.156_14 depends on package: automake>=1.18.1 - found ===> Returning to build of antioch-0.4.0.156_14 ===> antioch-0.4.0.156_14 depends on executable: libtoolize - not found ===> Installing existing package /packages/All/libtool-2.5.4_1.pkg [pkg.DaveG.ca] Installing libtool-2.5.4_1... [pkg.DaveG.ca] Extracting libtool-2.5.4_1: .......... done ===> antioch-0.4.0.156_14 depends on executable: libtoolize - found ===> Returning to build of antioch-0.4.0.156_14 ===> antioch-0.4.0.156_14 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc14 create symlink for gcc14 (world) create symlink for g++14 create symlink for g++14 (world) create symlink for cpp14 create symlink for cpp14 (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> antioch-0.4.0.156_14 depends on file: /usr/local/bin/ccache - found ===> Returning to build of antioch-0.4.0.156_14 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> antioch-0.4.0.156_14 depends on shared library: libgsl.so - not found ===> Installing existing package /packages/All/gsl-2.7.1_1.pkg [pkg.DaveG.ca] Installing gsl-2.7.1_1... [pkg.DaveG.ca] Extracting gsl-2.7.1_1: .......... done ===> antioch-0.4.0.156_14 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so) ===> Returning to build of antioch-0.4.0.156_14 ===> antioch-0.4.0.156_14 depends on shared library: libOpenCL.so - found (/usr/local/lib/libOpenCL.so) =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for antioch-0.4.0.156_14 libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:12: warning: The macro 'AC_CONFIG_HEADER' is obsolete. configure.ac:12: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:12: the top level configure.ac:66: warning: The macro 'AC_HELP_STRING' is obsolete. configure.ac:66: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:66: the top level configure.ac:74: warning: The macro 'AC_HELP_STRING' is obsolete. configure.ac:74: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:74: the top level configure.ac:90: warning: The macro 'AC_LANG_C' is obsolete. configure.ac:90: You should run autoupdate. ./lib/autoconf/c.m4:72: AC_LANG_C is expanded from... m4/common/acx_pthread.m4:48: ACX_PTHREAD is expanded from... m4/common/ax_check_cl.m4:39: AX_CHECK_CL is expanded from... m4/common/vexcl.m4:35: AX_PATH_VEXCL is expanded from... configure.ac:90: the top level configure.ac:90: warning: The macro 'AC_TRY_LINK' is obsolete. configure.ac:90: You should run autoupdate. ./lib/autoconf/general.m4:2918: AC_TRY_LINK is expanded from... m4/common/acx_pthread.m4:48: ACX_PTHREAD is expanded from... m4/common/ax_check_cl.m4:39: AX_CHECK_CL is expanded from... m4/common/vexcl.m4:35: AX_PATH_VEXCL is expanded from... configure.ac:90: the top level configure.ac:90: warning: The macro 'AC_HELP_STRING' is obsolete. configure.ac:90: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... m4/common/ax_check_cl.m4:39: AX_CHECK_CL is expanded from... m4/common/vexcl.m4:35: AX_PATH_VEXCL is expanded from... configure.ac:90: the top level configure.ac:90: warning: The macro 'BOOST_THREADS' is obsolete. configure.ac:90: You should run autoupdate. m4/common/boost.m4:1206: BOOST_THREADS is expanded from... m4/common/vexcl.m4:35: AX_PATH_VEXCL is expanded from... configure.ac:90: the top level configure.ac:108: warning: The macro 'AC_HELP_STRING' is obsolete. configure.ac:108: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... m4/common/eigen.m4:22: CONFIGURE_EIGEN is expanded from... configure.ac:108: the top level configure.ac:108: warning: The macro 'AC_LANG_CPLUSPLUS' is obsolete. configure.ac:108: You should run autoupdate. ./lib/autoconf/c.m4:270: AC_LANG_CPLUSPLUS is expanded from... m4/common/eigen.m4:22: CONFIGURE_EIGEN is expanded from... configure.ac:108: the top level configure.ac:108: warning: AC_CHECK_HEADERS($EIGEN_INC/Eigen/Eigen): you should use literals ./lib/autoconf/headers.m4:217: AC_CHECK_HEADERS is expanded from... m4/common/eigen.m4:22: CONFIGURE_EIGEN is expanded from... configure.ac:108: the top level configure.ac:172: warning: The macro 'AC_HELP_STRING' is obsolete. configure.ac:172: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... m4/common/coverage.m4:25: AX_CODE_COVERAGE is expanded from... configure.ac:172: the top level configure.ac:21: installing 'build-aux/compile' configure.ac:17: installing 'build-aux/config.guess' configure.ac:17: installing 'build-aux/config.sub' configure.ac:18: installing 'build-aux/install-sh' configure.ac:18: installing 'build-aux/missing' examples/Makefile.am: installing 'build-aux/depcomp' parallel-tests: installing 'build-aux/test-driver' configure: loading site script /usr/ports/Templates/config.site checking build system type... amd64-portbld-freebsd15.0 checking host system type... amd64-portbld-freebsd15.0 checking target system type... amd64-portbld-freebsd15.0 checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether /usr/local/bin/gmake sets $(MAKE)... yes checking whether /usr/local/bin/gmake supports nested variables... yes checking xargs -n works... yes checking whether UID '0' is supported by ustar format... yes checking whether GID '0' is supported by ustar format... yes checking how to create a ustar tar archive... (cached) /usr/bin/tar checking how to print strings... printf checking whether /usr/local/bin/gmake supports the include directive... yes (GNU style) checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether cc accepts -g... yes checking for cc option to enable C11 features... none needed checking whether cc understands -c and -o together... yes checking dependency style of cc... gcc3 checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 524288 checking how to convert amd64-portbld-freebsd15.0 file names to amd64-portbld-freebsd15.0 format... func_convert_file_noop checking how to convert amd64-portbld-freebsd15.0 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for stdio.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for strings.h... (cached) yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... yes checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd15.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking Major version... 0 checking Minor version... 5 checking Point version... 0 checking for gcc... (cached) cc checking whether the compiler supports GNU C... (cached) yes checking whether cc accepts -g... (cached) yes checking for cc option to enable C11 features... (cached) none needed checking whether cc understands -c and -o together... (cached) yes checking dependency style of cc... 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(cached) yes checking whether c++ supports C++11 -> decltype(this->f())... no configure: No compiler supporting trailing decltype(this->f()) was found checking for C++11 static_assert support... yes checking for git... no checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for perl... /usr/local/bin/perl find: /wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/{src,test}: No such file or directory checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating doxygen/txt_common/about_vpath.page config.status: creating test/kinetics_unit_air_5sp.sh config.status: creating test/kinetics_unit_thrust_air_5sp.sh config.status: creating test/kinetics_vec_unit_air_5sp.sh config.status: creating test/kinetics_regression_air_5sp.sh config.status: creating test/kinetics_regression_vec_air_5sp.sh config.status: creating test/photochemical_rate_unit.sh config.status: creating test/parsing_xml.sh config.status: creating test/fail_parsing_xml_1.sh config.status: creating test/fail_parsing_xml_2.sh config.status: creating test/parsing_chemkin.sh config.status: creating test/kinetics_reactive_scheme_unit.sh config.status: creating test/nasa_evaluator_unit.sh config.status: creating test/ascii_parser_unit.sh config.status: creating test/kinetics_partial_order_unit.sh config.status: creating src/utilities/include/antioch/antioch_version.h config.status: creating antioch.pc config.status: creating doxygen/Makefile config.status: creating doxygen/antioch.dox config.status: creating Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating examples/Makefile config.status: creating antioch_config.h.tmp config.status: executing antioch_config.h commands config.status: creating antioch_config.h - prefix ANTIOCH for antioch_config.h.tmp defines config.status: executing depfiles commands config.status: executing libtool commands ----------------------------------- SUMMARY ----------------------------------- Package version............... : antioch-0.5.0 C++ compiler.................. : c++ C++ compiler flags............ : -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall Install dir................... : /usr/local Build user.................... : Build host.................... : pkg.DaveG.ca Configure date................ : 2026-01-09 04:31 Build architecture............ : amd64-portbld-freebsd15.0 Revision id................... : external Testing Options: Number of tuples............ : 2 CPPUnit..................... : no Optional Libraries: Eigen....................... : yes MetaPhysicL................. : yes METAPHYSICL_CPPFLAGS...... : -I/usr/local/include -I/usr/local/src METAPHYSICL_LDFLAGS....... : -L/usr/local/lib -Wl,-rpath,/usr/local/lib METAPHYSICL_LIBS.......... : -lmetaphysicl VexCL....................... : no ViennaCL.................... : yes VIENNACL_CPPFLAGS......... : -I/usr/local/include -pthread -D_THREAD_SAFE -pthread VIENNACL_LDFLAGS.......... : VIENNACL_LIBS............. : -lOpenCL -lm GRVY........................ : no GSL......................... : yes GSL_CPPFLAGS.............. : -I/usr/local/include GSL_LDFLAGS............... : -L/usr/local/lib -Wl,-rpath,/usr/local/lib GSL_LIBS.................. : -lgsl -lgslcblas ------------------------------------------------------------------------------- Configure complete, now type 'make' and then 'make install'. =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for antioch-0.4.0.156_14 Makefile:1261: warning: ignoring prerequisites on suffix rule definition Usage: update_license.pl [OPTION] LICENSE-FILE SOURCE-FILES... OPTIONS: -S dir use dir as location of source-files -c2f_comment convert c++ comments in license header to F90 style -c2sh_comment convert c++ comments in license header to shell script style echo 'updated source license headers' >.license.stamp /usr/local/bin/gmake all-recursive gmake[1]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' Makefile:1261: warning: ignoring prerequisites on suffix rule definition Making all in src gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/src' depbase=`echo apps/version.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT apps/version.o -MD -MP -MF $depbase.Tpo -c -o apps/version.o apps/version.C &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo core/src/chemical_mixture.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT core/src/chemical_mixture.lo -MD -MP -MF $depbase.Tpo -c -o core/src/chemical_mixture.lo core/src/chemical_mixture.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/ascii_parser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/ascii_parser.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/ascii_parser.lo parsing/src/ascii_parser.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/blottner_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/blottner_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/blottner_parsing.lo parsing/src/blottner_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo 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--tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/cea_mixture_ascii_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/cea_mixture_ascii_parsing.lo parsing/src/cea_mixture_ascii_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/chemkin_parser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include 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-I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/nasa_mixture_parsing.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/nasa_mixture_parsing.lo parsing/src/nasa_mixture_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/parser_base.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/parser_base.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/parser_base.lo parsing/src/parser_base.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/read_reaction_set_data.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/read_reaction_set_data.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/read_reaction_set_data.lo parsing/src/read_reaction_set_data.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/species_parsing.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe 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parsing/src/transport_species_parsing.lo parsing/src/transport_species_parsing.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo parsing/src/xml_parser.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/xml_parser.lo -MD -MP -MF $depbase.Tpo -c -o parsing/src/xml_parser.lo parsing/src/xml_parser.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo 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--mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT utilities/src/antioch_version.lo -MD -MP -MF $depbase.Tpo -c -o utilities/src/antioch_version.lo utilities/src/antioch_version.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo utilities/src/gsl_spliner_impl.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include 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-I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT utilities/src/gsl_spliner_shim.lo -MD -MP -MF $depbase.Tpo -c -o utilities/src/gsl_spliner_shim.lo utilities/src/gsl_spliner_shim.C &&\ mv -f $depbase.Tpo $depbase.Plo depbase=`echo utilities/src/string_utils.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/sh ../libtool --tag=CXX --mode=compile c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT utilities/src/string_utils.lo -MD -MP -MF $depbase.Tpo -c -o utilities/src/string_utils.lo utilities/src/string_utils.C &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT core/src/chemical_mixture.lo -MD -MP -MF core/src/.deps/chemical_mixture.Tpo -c core/src/chemical_mixture.C -fPIC -DPIC -o core/src/.libs/chemical_mixture.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/nasa_mixture_parsing.lo -MD -MP -MF parsing/src/.deps/nasa_mixture_parsing.Tpo -c parsing/src/nasa_mixture_parsing.C -fPIC -DPIC -o parsing/src/.libs/nasa_mixture_parsing.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT utilities/src/string_utils.lo -MD -MP -MF utilities/src/.deps/string_utils.Tpo -c utilities/src/string_utils.C -fPIC -DPIC -o utilities/src/.libs/string_utils.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/ascii_parser.lo -MD -MP -MF parsing/src/.deps/ascii_parser.Tpo -c parsing/src/ascii_parser.C -fPIC -DPIC -o parsing/src/.libs/ascii_parser.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT utilities/src/antioch_version.lo -MD -MP -MF utilities/src/.deps/antioch_version.Tpo -c utilities/src/antioch_version.C -fPIC -DPIC -o utilities/src/.libs/antioch_version.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/species_parsing.lo -MD -MP -MF parsing/src/.deps/species_parsing.Tpo -c parsing/src/species_parsing.C -fPIC -DPIC -o parsing/src/.libs/species_parsing.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/xml_parser.lo -MD -MP -MF parsing/src/.deps/xml_parser.Tpo -c parsing/src/xml_parser.C -fPIC -DPIC -o parsing/src/.libs/xml_parser.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/transport_species_parsing.lo -MD -MP -MF parsing/src/.deps/transport_species_parsing.Tpo -c parsing/src/transport_species_parsing.C -fPIC -DPIC -o parsing/src/.libs/transport_species_parsing.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/sutherland_parsing.lo -MD -MP -MF parsing/src/.deps/sutherland_parsing.Tpo -c parsing/src/sutherland_parsing.C -fPIC -DPIC -o parsing/src/.libs/sutherland_parsing.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/chemkin_parser.lo -MD -MP -MF parsing/src/.deps/chemkin_parser.Tpo -c parsing/src/chemkin_parser.C -fPIC -DPIC -o parsing/src/.libs/chemkin_parser.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/cea_mixture_parsing.lo -MD -MP -MF parsing/src/.deps/cea_mixture_parsing.Tpo -c parsing/src/cea_mixture_parsing.C -fPIC -DPIC -o parsing/src/.libs/cea_mixture_parsing.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT utilities/src/gsl_spliner_impl.lo -MD -MP -MF utilities/src/.deps/gsl_spliner_impl.Tpo -c utilities/src/gsl_spliner_impl.C -fPIC -DPIC -o utilities/src/.libs/gsl_spliner_impl.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/parser_base.lo -MD -MP -MF parsing/src/.deps/parser_base.Tpo -c parsing/src/parser_base.C -fPIC -DPIC -o parsing/src/.libs/parser_base.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT utilities/src/gsl_spliner_shim.lo -MD -MP -MF utilities/src/.deps/gsl_spliner_shim.Tpo -c utilities/src/gsl_spliner_shim.C -fPIC -DPIC -o utilities/src/.libs/gsl_spliner_shim.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/blottner_parsing.lo -MD -MP -MF parsing/src/.deps/blottner_parsing.Tpo -c parsing/src/blottner_parsing.C -fPIC -DPIC -o parsing/src/.libs/blottner_parsing.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/cea_mixture_ascii_parsing.lo -MD -MP -MF parsing/src/.deps/cea_mixture_ascii_parsing.Tpo -c parsing/src/cea_mixture_ascii_parsing.C -fPIC -DPIC -o parsing/src/.libs/cea_mixture_ascii_parsing.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT parsing/src/read_reaction_set_data.lo -MD -MP -MF parsing/src/.deps/read_reaction_set_data.Tpo -c parsing/src/read_reaction_set_data.C -fPIC -DPIC -o parsing/src/.libs/read_reaction_set_data.o libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src/core/include -I../src/units/include -I../src/particles_flux/include -I../src/kinetics/include -I../src/parsing/include -I../src/thermo/include -I../src/transport/include -I../src/viscosity/include -I../src/utilities/include -I../src/utilities/include -I/usr/local/include -I/usr/local/include -I/usr/local/src -I/usr/local/include/eigen3 -I/usr/local/include -pthread -D_THREAD_SAFE -pthread -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -MT transport/src/transport_mixture.lo -MD -MP -MF transport/src/.deps/transport_mixture.Tpo -c transport/src/transport_mixture.C -fPIC -DPIC -o transport/src/.libs/transport_mixture.o parsing/src/chemkin_parser.C:776:100: warning: 'ptr_fun' is deprecated [-Wdeprecated-declarations] 776 | out[i].erase(out[i].begin(), std::find_if(out[i].begin(), out[i].end(), std::not1(std::ptr_fun(std::isspace)))); | ^ /usr/include/c++/v1/__functional/pointer_to_unary_function.h:35:1: note: 'ptr_fun' has been explicitly marked deprecated here 35 | _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_HIDE_FROM_ABI pointer_to_unary_function<_Arg, _Result> | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ parsing/src/chemkin_parser.C:778:86: warning: 'ptr_fun' is deprecated [-Wdeprecated-declarations] 778 | out[i].erase(std::find_if(out[i].rbegin(), out[i].rend(), std::not1(std::ptr_fun(std::isspace))).base(), out[i].end()); | ^ /usr/include/c++/v1/__functional/pointer_to_unary_function.h:35:1: note: 'ptr_fun' has been explicitly marked deprecated here 35 | _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_HIDE_FROM_ABI pointer_to_unary_function<_Arg, _Result> | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ parsing/src/chemkin_parser.C:776:100: warning: 'ptr_fun' is deprecated [-Wdeprecated-declarations] 776 | out[i].erase(out[i].begin(), std::find_if(out[i].begin(), out[i].end(), std::not1(std::ptr_fun(std::isspace)))); | ^ parsing/src/chemkin_parser.C:1080:49: note: in instantiation of member function 'Antioch::ChemKinParser::parse_coefficients_line' requested here 1080 | ANTIOCH_NUMERIC_TYPE_CLASS_INSTANTIATE(Antioch::ChemKinParser); | ^ /usr/include/c++/v1/__functional/pointer_to_unary_function.h:35:1: note: 'ptr_fun' has been explicitly marked deprecated here 35 | _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_HIDE_FROM_ABI pointer_to_unary_function<_Arg, _Result> | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ parsing/src/chemkin_parser.C:778:86: warning: 'ptr_fun' is deprecated [-Wdeprecated-declarations] 778 | out[i].erase(std::find_if(out[i].rbegin(), out[i].rend(), std::not1(std::ptr_fun(std::isspace))).base(), out[i].end()); | ^ /usr/include/c++/v1/__functional/pointer_to_unary_function.h:35:1: note: 'ptr_fun' has been explicitly marked deprecated here 35 | _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_HIDE_FROM_ABI pointer_to_unary_function<_Arg, _Result> | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ parsing/src/chemkin_parser.C:776:100: warning: 'ptr_fun' is deprecated [-Wdeprecated-declarations] 776 | out[i].erase(out[i].begin(), std::find_if(out[i].begin(), out[i].end(), std::not1(std::ptr_fun(std::isspace)))); | ^ parsing/src/chemkin_parser.C:1080:49: note: in instantiation of member function 'Antioch::ChemKinParser<>::parse_coefficients_line' requested here 1080 | ANTIOCH_NUMERIC_TYPE_CLASS_INSTANTIATE(Antioch::ChemKinParser); | ^ /usr/include/c++/v1/__functional/pointer_to_unary_function.h:35:1: note: 'ptr_fun' has been explicitly marked deprecated here 35 | _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_HIDE_FROM_ABI pointer_to_unary_function<_Arg, _Result> | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ parsing/src/chemkin_parser.C:778:86: warning: 'ptr_fun' is deprecated [-Wdeprecated-declarations] 778 | out[i].erase(std::find_if(out[i].rbegin(), out[i].rend(), std::not1(std::ptr_fun(std::isspace))).base(), out[i].end()); | ^ /usr/include/c++/v1/__functional/pointer_to_unary_function.h:35:1: note: 'ptr_fun' has been explicitly marked deprecated here 35 | _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_HIDE_FROM_ABI pointer_to_unary_function<_Arg, _Result> | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ parsing/src/chemkin_parser.C:776:100: warning: 'ptr_fun' is deprecated [-Wdeprecated-declarations] 776 | out[i].erase(out[i].begin(), std::find_if(out[i].begin(), out[i].end(), std::not1(std::ptr_fun(std::isspace)))); | ^ parsing/src/chemkin_parser.C:1080:49: note: in instantiation of member function 'Antioch::ChemKinParser::parse_coefficients_line' requested here 1080 | ANTIOCH_NUMERIC_TYPE_CLASS_INSTANTIATE(Antioch::ChemKinParser); | ^ /usr/include/c++/v1/__functional/pointer_to_unary_function.h:35:1: note: 'ptr_fun' has been explicitly marked deprecated here 35 | _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_HIDE_FROM_ABI pointer_to_unary_function<_Arg, _Result> | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ parsing/src/chemkin_parser.C:778:86: warning: 'ptr_fun' is deprecated [-Wdeprecated-declarations] 778 | out[i].erase(std::find_if(out[i].rbegin(), out[i].rend(), std::not1(std::ptr_fun(std::isspace))).base(), out[i].end()); | ^ /usr/include/c++/v1/__functional/pointer_to_unary_function.h:35:1: note: 'ptr_fun' has been explicitly marked deprecated here 35 | _LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_HIDE_FROM_ABI pointer_to_unary_function<_Arg, _Result> | ^ /usr/include/c++/v1/__config:736:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' 736 | # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED | ^ /usr/include/c++/v1/__config:713:49: note: expanded from macro '_LIBCPP_DEPRECATED' 713 | # define _LIBCPP_DEPRECATED __attribute__((__deprecated__)) | ^ 8 warnings generated. /bin/sh ../libtool --tag=CXX --mode=link c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -L/usr/local/lib -Wl,-rpath,/usr/local/lib -o libantioch.la -rpath /usr/local/lib core/src/chemical_mixture.lo parsing/src/ascii_parser.lo parsing/src/blottner_parsing.lo parsing/src/cea_mixture_parsing.lo parsing/src/cea_mixture_ascii_parsing.lo parsing/src/chemkin_parser.lo parsing/src/nasa_mixture_parsing.lo parsing/src/parser_base.lo parsing/src/read_reaction_set_data.lo parsing/src/species_parsing.lo parsing/src/sutherland_parsing.lo parsing/src/transport_species_parsing.lo parsing/src/xml_parser.lo transport/src/transport_mixture.lo utilities/src/antioch_version.lo utilities/src/gsl_spliner_impl.lo utilities/src/gsl_spliner_shim.lo utilities/src/string_utils.lo -lgsl -lgslcblas -lOpenCL -lm libtool: link: c++ -fPIC -DPIC -shared -nostdlib /usr/lib/crti.o /usr/lib/crtbeginS.o core/src/.libs/chemical_mixture.o parsing/src/.libs/ascii_parser.o parsing/src/.libs/blottner_parsing.o parsing/src/.libs/cea_mixture_parsing.o parsing/src/.libs/cea_mixture_ascii_parsing.o parsing/src/.libs/chemkin_parser.o parsing/src/.libs/nasa_mixture_parsing.o parsing/src/.libs/parser_base.o parsing/src/.libs/read_reaction_set_data.o parsing/src/.libs/species_parsing.o parsing/src/.libs/sutherland_parsing.o parsing/src/.libs/transport_species_parsing.o parsing/src/.libs/xml_parser.o transport/src/.libs/transport_mixture.o utilities/src/.libs/antioch_version.o utilities/src/.libs/gsl_spliner_impl.o utilities/src/.libs/gsl_spliner_shim.o utilities/src/.libs/string_utils.o -L/usr/local/lib -lgsl -lgslcblas -lOpenCL -L/usr/lib -lc++ -lm -lc -lgcc -lgcc_s /usr/lib/crtendS.o /usr/lib/crtn.o -O2 -fstack-protector-strong -Wl,-rpath -Wl,/usr/local/lib -Wl,-soname -Wl,libantioch.so.0 -o .libs/libantioch.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libantioch.so.0" && ln -s "libantioch.so.0.0.0" "libantioch.so.0") libtool: link: (cd ".libs" && rm -f "libantioch.so" && ln -s "libantioch.so.0.0.0" "libantioch.so") libtool: link: ( cd ".libs" && rm -f "libantioch.la" && ln -s "../libantioch.la" "libantioch.la" ) /bin/sh ../libtool --tag=CXX --mode=link c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -L/usr/local/lib -Wl,-rpath,/usr/local/lib -o antioch_version apps/version.o libantioch.la -lgsl -lgslcblas -lOpenCL -lm libtool: link: c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -Wall -Wl,-rpath -Wl,/usr/local/lib -o .libs/antioch_version apps/version.o -L/usr/local/lib ./.libs/libantioch.so -lm -lgsl -lgslcblas -lOpenCL -Wl,-rpath -Wl,/usr/local/lib gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/src' Making all in test gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/test' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/test' Making all in doxygen gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/doxygen' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/doxygen' Making all in share gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/share' gmake[2]: Nothing to be done for 'all'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/share' gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' Makefile:1261: warning: ignoring prerequisites on suffix rule definition gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for antioch-0.4.0.156_14 ===> Generating temporary packing list Makefile:1261: warning: ignoring prerequisites on suffix rule definition /usr/local/bin/gmake install-recursive gmake[1]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' Makefile:1261: warning: ignoring prerequisites on suffix rule definition Making install in src gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/src' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/src' /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c libantioch.la '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libantioch.so.0.0.0 /wrkdirs/usr/ports/science/antioch/work/stage/usr/local/lib/libantioch.so.0.0.0 libtool: install: (cd /wrkdirs/usr/ports/science/antioch/work/stage/usr/local/lib && { ln -s -f libantioch.so.0.0.0 libantioch.so.0 || { rm -f libantioch.so.0 && ln -s libantioch.so.0.0.0 libantioch.so.0; }; }) libtool: install: (cd /wrkdirs/usr/ports/science/antioch/work/stage/usr/local/lib && { ln -s -f libantioch.so.0.0.0 libantioch.so || { rm -f libantioch.so && ln -s libantioch.so.0.0.0 libantioch.so; }; }) libtool: install: /usr/bin/install -c .libs/libantioch.lai /wrkdirs/usr/ports/science/antioch/work/stage/usr/local/lib/libantioch.la libtool: warning: remember to run 'libtool --finish /usr/local/lib' /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/bin' /bin/sh ../libtool --mode=install install -s -m 555 antioch_version '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/bin' libtool: warning: 'libantioch.la' has not been installed in '/usr/local/lib' libtool: install: install -m 555 -s .libs/antioch_version /wrkdirs/usr/ports/science/antioch/work/stage/usr/local/bin/antioch_version /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include/antioch' install -m 0644 core/include/antioch/chemical_species.h core/include/antioch/chemical_mixture.h core/include/antioch/kinetics_conditions.h units/include/antioch/converter.h units/include/antioch/insi.h units/include/antioch/siprefix.h units/include/antioch/unit_base.h units/include/antioch/unit_defs.h units/include/antioch/units.h units/include/antioch/unit_store.h particles_flux/include/antioch/sigma_bin_converter.h particles_flux/include/antioch/particle_flux.h kinetics/include/antioch/kinetics_enum.h kinetics/include/antioch/kinetics_type.h kinetics/include/antioch/constant_rate.h kinetics/include/antioch/hercourtessen_rate.h kinetics/include/antioch/berthelot_rate.h kinetics/include/antioch/arrhenius_rate.h kinetics/include/antioch/berthelothercourtessen_rate.h kinetics/include/antioch/kooij_rate.h kinetics/include/antioch/vanthoff_rate.h kinetics/include/antioch/photochemical_rate.h kinetics/include/antioch/reaction_enum.h kinetics/include/antioch/reaction.h kinetics/include/antioch/elementary_reaction.h kinetics/include/antioch/duplicate_reaction.h kinetics/include/antioch/threebody_reaction.h kinetics/include/antioch/falloff_reaction.h kinetics/include/antioch/falloff_threebody_reaction.h kinetics/include/antioch/lindemann_falloff.h kinetics/include/antioch/troe_falloff.h kinetics/include/antioch/reaction_set.h kinetics/include/antioch/reaction_parsing.h kinetics/include/antioch/kinetics_parsing.h kinetics/include/antioch/kinetics_evaluator.h parsing/include/antioch/tinyxml2.h parsing/include/antioch/tinyxml2_imp.h parsing/include/antioch/read_reaction_set_data.h parsing/include/antioch/read_reaction_set_data_xml.h parsing/include/antioch/blottner_parsing.h '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include/antioch' install -m 0644 parsing/include/antioch/sutherland_parsing.h parsing/include/antioch/cea_mixture_parsing.h parsing/include/antioch/nasa_mixture_parsing.h parsing/include/antioch/cea_mixture_ascii_parsing.h parsing/include/antioch/species_parsing.h parsing/include/antioch/transport_species_parsing.h parsing/include/antioch/transport_species_ascii_parsing.h parsing/include/antioch/nasa_mixture_ascii_parsing.h parsing/include/antioch/parsing_enum.h parsing/include/antioch/xml_parser.h parsing/include/antioch/chemkin_definitions.h parsing/include/antioch/chemkin_parser.h parsing/include/antioch/ascii_parser.h parsing/include/antioch/parser_base.h parsing/include/antioch/constant_lewis_diffusivity_building.h parsing/include/antioch/eucken_thermal_conductivity_building.h parsing/include/antioch/kinetics_theory_viscosity_building.h parsing/include/antioch/kinetics_theory_thermal_conductivity_building.h parsing/include/antioch/ascii_parser_instantiation_macro.h parsing/include/antioch/blottner_parsing_instantiate_macro.h parsing/include/antioch/cea_mixture_ascii_parsing_instantiate_macro.h parsing/include/antioch/nasa_mixture_parsing_instantiate_macro.h parsing/include/antioch/read_reaction_set_data_instantiate_macro.h parsing/include/antioch/species_parsing_instantiation_macro.h parsing/include/antioch/sutherland_parsing_instantiate_macro.h parsing/include/antioch/xml_parser_instantiation_macro.h thermo/include/antioch/nasa_curve_fit_base.h thermo/include/antioch/nasa7_curve_fit.h thermo/include/antioch/nasa9_curve_fit.h thermo/include/antioch/cea_curve_fit.h thermo/include/antioch/temp_cache.h thermo/include/antioch/nasa_mixture.h thermo/include/antioch/nasa_evaluator.h thermo/include/antioch/cea_mixture.h thermo/include/antioch/cea_evaluator.h thermo/include/antioch/stat_mech_thermo.h thermo/include/antioch/ideal_gas_micro_thermo.h thermo/include/antioch/macro_micro_thermo_base.h transport/include/antioch/mixture_transport_base.h transport/include/antioch/mixture_viscosity.h '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include/antioch' install -m 0644 transport/include/antioch/mixture_conductivity.h transport/include/antioch/mixture_diffusion.h transport/include/antioch/wilke_mixture.h transport/include/antioch/wilke_evaluator.h transport/include/antioch/mixture_averaged_transport_mixture.h transport/include/antioch/mixture_averaged_transport_evaluator.h transport/include/antioch/lennard_jones_potential.h transport/include/antioch/stockmayer_potential.h transport/include/antioch/transport_mixture.h transport/include/antioch/transport_species.h viscosity/include/antioch/species_viscosity_base.h viscosity/include/antioch/blottner_viscosity.h viscosity/include/antioch/sutherland_viscosity.h viscosity/include/antioch/kinetics_theory_viscosity.h diffusion/include/antioch/constant_lewis_diffusivity.h diffusion/include/antioch/molecular_binary_diffusion.h diffusion/include/antioch/binary_diffusion_base.h diffusion/include/antioch/species_diffusion_base.h diffusion/include/antioch/diffusion_traits.h thermal_conduction/include/antioch/eucken_thermal_conductivity.h thermal_conduction/include/antioch/kinetics_theory_thermal_conductivity.h thermal_conduction/include/antioch/rotational_relaxation.h thermal_conduction/include/antioch/species_conductivity_base.h thermal_conduction/include/antioch/conductivity_traits.h utilities/include/antioch/antioch_exceptions.h utilities/include/antioch/antioch_asserts.h utilities/include/antioch/cmath_shims.h utilities/include/antioch/default_filename.h utilities/include/antioch/eigen_utils.h utilities/include/antioch/eigen_utils_decl.h utilities/include/antioch/input_utils.h utilities/include/antioch/math_constants.h utilities/include/antioch/metaprogramming.h utilities/include/antioch/metaprogramming_decl.h utilities/include/antioch/metaphysicl_utils.h utilities/include/antioch/metaphysicl_utils_decl.h utilities/include/antioch/physical_constants.h utilities/include/antioch/string_utils.h utilities/include/antioch/valarray_utils.h utilities/include/antioch/valarray_utils_decl.h '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include/antioch' install -m 0644 utilities/include/antioch/vector_utils.h utilities/include/antioch/vector_utils_decl.h utilities/include/antioch/vexcl_utils.h utilities/include/antioch/vexcl_utils_decl.h utilities/include/antioch/gsl_spliner.h utilities/include/antioch/gsl_spliner_impl.h utilities/include/antioch/gsl_spliner_shim.h utilities/include/antioch/gsl_spliner_policy.h utilities/include/antioch/antioch_numeric_type_instantiate_macro.h ../src/utilities/include/antioch/antioch_version.h '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include/antioch' gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/src' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/src' Making install in test gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/test' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/test' gmake[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include/antioch' install -m 0644 common/testing_utils.h standard_unit/reaction_rate_test_base.h standard_unit/reaction_rate_vector_test_base.h standard_unit/arrhenius_rate_test_helper.h standard_unit/arrhenius_rate_vector_test_base.h standard_unit/nasa_test_helper.h standard_unit/nasa7_thermo_test_base.h standard_unit/nasa9_thermo_test_base.h standard_unit/thermo_vector_test_base.h standard_unit/nasa7_mixture_vector_test_base.h standard_unit/nasa9_mixture_vector_test_base.h gsl_unit/gsl_spliner_test_base.h '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include/antioch' gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/test' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/test' Making install in doxygen gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/doxygen' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/doxygen' gmake[3]: Nothing to be done for 'install-exec-am'. gmake[3]: Nothing to be done for 'install-data-am'. gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/doxygen' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/doxygen' Making install in share gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/share' gmake[3]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/share' gmake[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/share/aclocal' install -m 0644 ../share/aclocal/antioch.m4 '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/share/aclocal' /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/share/antioch/default_files' install -m 0644 ../share/antioch_default_files/antioch_default_blottner_coefficient.dat ../share/antioch_default_files/antioch_default_chemical_mixture.dat ../share/antioch_default_files/antioch_default_chemical_species.dat ../share/antioch_default_files/antioch_default_electronic_data.dat ../share/antioch_default_files/antioch_default_sutherland_coefficient.dat ../share/antioch_default_files/antioch_default_thermo_data.dat ../share/antioch_default_files/antioch_default_thermo_data_NASA7.dat ../share/antioch_default_files/antioch_default_transport_species_data.dat ../share/antioch_default_files/antioch_default_vibrational_data.dat '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/share/antioch/default_files' /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/share/antioch/xml_inputs' install -m 0644 ../share/xml_inputs/gri30.xml ../share/xml_inputs/nasa9_thermo.xml '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/share/antioch/xml_inputs' gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/share' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43/share' gmake[2]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' Makefile:1261: warning: ignoring prerequisites on suffix rule definition gmake[3]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' Makefile:1261: warning: ignoring prerequisites on suffix rule definition gmake[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include' install -m 0644 antioch_config.h '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include' /bin/mkdir -p '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/lib/pkgconfig' install -m 0644 antioch.pc '/wrkdirs/usr/ports/science/antioch/work/stage/usr/local/lib/pkgconfig' /usr/local/bin/gmake install-data-hook gmake[4]: Entering directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' Makefile:1261: warning: ignoring prerequisites on suffix rule definition cd /wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include && cat antioch_config.h | /usr/bin/sed "s,\(define ANTIOCH_DEFAULT_FILES_PATH\).*$,\1 "\"/usr/local/share/antioch_default_files/\""," > config.replaced ; \ cd /wrkdirs/usr/ports/science/antioch/work/stage/usr/local/include && mv config.replaced antioch_config.h ; gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/antioch/work/antioch-0.4.0-156-g90ffa43' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-01-09T04:30:32+0000' 'PKG_NOTE_ports_top_git_hash=2d72fe63d004' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=df17c9422768' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for antioch-0.4.0.156_14 ===> Building antioch-0.4.0.156_14 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for antioch-0.4.0.156_14 build of science/antioch | antioch-0.4.0.156_14 ended at Thu Jan 8 23:31:47 EST 2026 build time: 00:01:16