=>> Building biology/andi build started at Thu Jan 22 05:50:30 EST 2026 port directory: /usr/ports/biology/andi package name: andi-0.14.3 building for: FreeBSD pkg.DaveG.ca 14.3-RELEASE-p7 FreeBSD 14.3-RELEASE-p7 1403000 amd64 maintained by: yuri@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 593 Sep 17 2024 /usr/ports/biology/andi/Makefile Ports top last git commit: 076a295eb33c Ports top unclean checkout: no Port dir last git commit: 7989e8dd3d93 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1403000 Job Id: 07 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1403000 UNAME_v=FreeBSD 14.3-RELEASE-p7 1403000 UNAME_r=14.3-RELEASE-p7 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/07/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_14_3_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_14_3_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for andi-0.14.3: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=/usr/local/bin/gmake PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/andi/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/andi/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/andi/work/.cache HOME=/wrkdirs/usr/ports/biology/andi/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/andi/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/andi/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh DEFAULT_AUTOCONF=2.72 CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/andi/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/andi/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/andi/work/.cache HOME=/wrkdirs/usr/ports/biology/andi/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/andi/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/andi/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DEFAULT_AUTOCONF=2.72 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" OSREL=14.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/andi" EXAMPLESDIR="share/examples/andi" DATADIR="share/andi" WWWDIR="www/andi" ETCDIR="etc/andi" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/andi DOCSDIR=/usr/local/share/doc/andi EXAMPLESDIR=/usr/local/share/examples/andi WWWDIR=/usr/local/www/andi ETCDIR=/usr/local/etc/andi --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> andi-0.14.3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.5.1.pkg [pkg.DaveG.ca] Installing pkg-2.5.1... [pkg.DaveG.ca] Extracting pkg-2.5.1: .......... done ===> andi-0.14.3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of andi-0.14.3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by andi-0.14.3 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by andi-0.14.3 for building => SHA256 Checksum OK for EvolBioInf-andi-v0.14-3-g390af15_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by andi-0.14.3 for building ===> Extracting for andi-0.14.3 => SHA256 Checksum OK for EvolBioInf-andi-v0.14-3-g390af15_GH0.tar.gz. =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for andi-0.14.3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> andi-0.14.3 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [pkg.DaveG.ca] Installing gmake-4.4.1... [pkg.DaveG.ca] `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] Extracting gmake-4.4.1: .......... done ===> andi-0.14.3 depends on package: gmake>=4.4.1 - found ===> Returning to build of andi-0.14.3 ===> andi-0.14.3 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-2.4.3,1.pkg [pkg.DaveG.ca] Installing pkgconf-2.4.3,1... [pkg.DaveG.ca] Extracting pkgconf-2.4.3,1: .......... done ===> andi-0.14.3 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of andi-0.14.3 ===> andi-0.14.3 depends on package: autoconf>=2.72_1 - not found ===> Installing existing package /packages/All/autoconf-2.72_1.pkg [pkg.DaveG.ca] Installing autoconf-2.72_1... [pkg.DaveG.ca] `-- Installing autoconf-switch-20220527... [pkg.DaveG.ca] `-- Extracting autoconf-switch-20220527: ....... done [pkg.DaveG.ca] `-- Installing m4-1.4.20,1... [pkg.DaveG.ca] `-- Extracting m4-1.4.20,1: .......... done [pkg.DaveG.ca] `-- Installing perl5-5.42.0_1... [pkg.DaveG.ca] `-- Extracting perl5-5.42.0_1: .......... done [pkg.DaveG.ca] Extracting autoconf-2.72_1: .......... done ===> andi-0.14.3 depends on package: autoconf>=2.72_1 - found ===> Returning to build of andi-0.14.3 ===> andi-0.14.3 depends on package: automake>=1.18.1 - not found ===> Installing existing package /packages/All/automake-1.18.1.pkg [pkg.DaveG.ca] Installing automake-1.18.1... [pkg.DaveG.ca] Extracting automake-1.18.1: .......... done ===> andi-0.14.3 depends on package: automake>=1.18.1 - found ===> Returning to build of andi-0.14.3 ===> andi-0.14.3 depends on file: /usr/local/bin/ccache - not found ===> Installing existing package /packages/All/ccache-3.7.12_8.pkg [pkg.DaveG.ca] Installing ccache-3.7.12_8... [pkg.DaveG.ca] Extracting ccache-3.7.12_8: ......... done Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for clang create symlink for clang (world) create symlink for clang++ create symlink for clang++ (world) ===== Message from ccache-3.7.12_8: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. ===> andi-0.14.3 depends on file: /usr/local/bin/ccache - found ===> Returning to build of andi-0.14.3 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> andi-0.14.3 depends on shared library: libdivsufsort.so - not found ===> Installing existing package /packages/All/libdivsufsort-2.0.2.1.20151027.pkg [pkg.DaveG.ca] Installing libdivsufsort-2.0.2.1.20151027... [pkg.DaveG.ca] Extracting libdivsufsort-2.0.2.1.20151027: ..... done ===> andi-0.14.3 depends on shared library: libdivsufsort.so - found (/usr/local/lib/libdivsufsort.so) ===> Returning to build of andi-0.14.3 ===> andi-0.14.3 depends on shared library: libgsl.so - not found ===> Installing existing package /packages/All/gsl-2.7.1_1.pkg [pkg.DaveG.ca] Installing gsl-2.7.1_1... [pkg.DaveG.ca] Extracting gsl-2.7.1_1: .......... done ===> andi-0.14.3 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so) ===> Returning to build of andi-0.14.3 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for andi-0.14.3 configure.ac:11: installing './ar-lib' configure.ac:6: installing './compile' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' parallel-tests: installing './test-driver' libs/Makefile.am: installing './depcomp' test/Makefile.am:14: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibility. test/Makefile.am:14: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/io.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/model.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/process.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:4: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:4: but option 'subdir-objects' is disabled configure: loading site script /usr/ports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether /usr/local/bin/gmake sets $(MAKE)... yes checking whether /usr/local/bin/gmake supports nested variables... yes checking xargs -n works... yes checking whether UID '0' is supported by ustar format... yes checking whether GID '0' is supported by ustar format... yes checking how to create a ustar tar archive... (cached) /usr/bin/tar checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether cc accepts -g... yes checking for cc option to enable C11 features... none needed checking whether cc understands -c and -o together... yes checking whether /usr/local/bin/gmake supports the include directive... yes (GNU style) checking dependency style of cc... gcc3 checking whether the compiler supports GNU C++... yes checking whether c++ accepts -g... yes checking for c++ option to enable C++11 features... none needed checking dependency style of c++... gcc3 checking whether /usr/local/bin/gmake sets $(MAKE)... (cached) yes checking how to run the C preprocessor... cpp checking for ranlib... ranlib checking for ar... ar checking the archiver (ar) interface... ar checking for c++ option to support OpenMP... -fopenmp checking for cc option to support OpenMP... -fopenmp checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_ran_binomial in -lgsl... yes checking for stdio.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for strings.h... (cached) yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for divsufsort.h... yes checking for divsufsort in -ldivsufsort... yes checking pkg-config is at least version 0.9.0... yes checking for limits.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking for err.h... (cached) yes checking for errno.h... (cached) yes checking for fcntl.h... (cached) yes checking for inline... inline checking for size_t... (cached) yes checking for ssize_t... (cached) yes checking for int32_t... (cached) yes checking for uint8_t... (cached) yes checking for _Bool... (cached) yes checking for stdbool.h that conforms to C99 or later... (cached) yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking for strdup... (cached) yes checking for strerror... (cached) yes checking for strndup... (cached) yes checking for strcasecmp... (cached) yes checking for strchr... (cached) yes checking for strrchr... (cached) yes checking for strchrnul... (cached) yes checking for strtoul... (cached) yes checking for strtod... (cached) yes checking for reallocarray... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating docs/andi.1 config.status: creating docs/Makefile config.status: creating libs/Makefile config.status: creating opt/Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/config.h config.status: executing depfiles commands =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for andi-0.14.3 Making all in . gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15' gmake[1]: Nothing to be done for 'all-am'. gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15' Making all in libs gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/libs' cc -DHAVE_CONFIG_H -I. -I../src -I../opt -isystem /usr/local/include -fms-extensions -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT libpfasta_a-pfasta.o -MD -MP -MF .deps/libpfasta_a-pfasta.Tpo -c -o libpfasta_a-pfasta.o `test -f 'pfasta.c' || echo './'`pfasta.c mv -f .deps/libpfasta_a-pfasta.Tpo .deps/libpfasta_a-pfasta.Po rm -f libpfasta.a ar cr libpfasta.a libpfasta_a-pfasta.o ranlib libpfasta.a gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/libs' Making all in opt gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/opt' rm -f libcompat.a ar cr libcompat.a ranlib libcompat.a gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/opt' Making all in src gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/src' /usr/local/bin/gmake all-am gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/src' cc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -isystem /usr/local/include -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT andi-andi.o -MD -MP -MF .deps/andi-andi.Tpo -c -o andi-andi.o `test -f 'andi.c' || echo './'`andi.c cc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -isystem /usr/local/include -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT andi-esa.o -MD -MP -MF .deps/andi-esa.Tpo -c -o andi-esa.o `test -f 'esa.c' || echo './'`esa.c cc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -isystem /usr/local/include -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT andi-process.o -MD -MP -MF .deps/andi-process.Tpo -c -o andi-process.o `test -f 'process.c' || echo './'`process.c cc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -isystem /usr/local/include -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT andi-sequence.o -MD -MP -MF .deps/andi-sequence.Tpo -c -o andi-sequence.o `test -f 'sequence.c' || echo './'`sequence.c cc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -isystem /usr/local/include -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT andi-io.o -MD -MP -MF .deps/andi-io.Tpo -c -o andi-io.o `test -f 'io.c' || echo './'`io.c cc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -isystem /usr/local/include -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -MT andi-model.o -MD -MP -MF .deps/andi-model.Tpo -c -o andi-model.o `test -f 'model.c' || echo './'`model.c mv -f .deps/andi-io.Tpo .deps/andi-io.Po process.c:114:30: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ^ process.c:236:39: warning: implicit conversion from 'unsigned long' to 'double' changes value from 271275648142787523 to 271275648142787520 [-Wimplicit-const-int-float-conversion] 236 | size_t root = (size_t)sqrt(SIZE_MAX / sizeof(*M)); | ~~~~ ~~~~~~~~~^~~~~~~~~~~~ 2 warnings generated. mv -f .deps/andi-process.Tpo .deps/andi-process.Po mv -f .deps/andi-andi.Tpo .deps/andi-andi.Po mv -f .deps/andi-sequence.Tpo .deps/andi-sequence.Po mv -f .deps/andi-esa.Tpo .deps/andi-esa.Po mv -f .deps/andi-model.Tpo .deps/andi-model.Po cc -fopenmp -Wall -Wextra -Wno-missing-field-initializers -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -o andi andi-andi.o andi-esa.o andi-process.o andi-sequence.o andi-io.o andi-model.o ../libs/libpfasta.a ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm -L/usr/local/lib gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/src' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/src' Making all in docs gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/docs' gmake[1]: Nothing to be done for 'all'. gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/docs' =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for andi-0.14.3 ===> Generating temporary packing list Making install in . gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15' gmake[2]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/andi/work/stage/usr/local/share/doc/andi' install -m 0644 andi-manual.pdf '/wrkdirs/usr/ports/biology/andi/work/stage/usr/local/share/doc/andi' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15' Making install in libs gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/libs' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/libs' gmake[2]: Nothing to be done for 'install-exec-am'. gmake[2]: Nothing to be done for 'install-data-am'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/libs' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/libs' Making install in opt gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/opt' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/opt' gmake[2]: Nothing to be done for 'install-exec-am'. gmake[2]: Nothing to be done for 'install-data-am'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/opt' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/opt' Making install in src gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/src' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/src' /bin/mkdir -p '/wrkdirs/usr/ports/biology/andi/work/stage/usr/local/bin' install -s -m 555 andi '/wrkdirs/usr/ports/biology/andi/work/stage/usr/local/bin' gmake[2]: Nothing to be done for 'install-data-am'. gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/src' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/src' Making install in docs gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/docs' gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/docs' gmake[2]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/wrkdirs/usr/ports/biology/andi/work/stage/usr/local/share/man/man1' install -m 0644 andi.1 '/wrkdirs/usr/ports/biology/andi/work/stage/usr/local/share/man/man1' gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/docs' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/andi/work/andi-0.14-3-g390af15/docs' ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-01-22T10:50:30+0000' 'PKG_NOTE_ports_top_git_hash=076a295eb33c' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=7989e8dd3d93' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for andi-0.14.3 ===> Building andi-0.14.3 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for andi-0.14.3 build of biology/andi | andi-0.14.3 ended at Thu Jan 22 05:50:54 EST 2026 build time: 00:00:25