=>> Building biology/chip-seq build started at Thu Mar 19 03:17:18 EDT 2026 port directory: /usr/ports/biology/chip-seq package name: chip-seq-0.1.2_1 building for: FreeBSD pkg.DaveG.ca 15.0-RELEASE-p3 FreeBSD 15.0-RELEASE-p3 1500068 amd64 maintained by: jwb@FreeBSD.org Makefile datestamp: -rw-r--r-- 1 root wheel 747 Sep 22 04:12 /usr/ports/biology/chip-seq/Makefile Ports top last git commit: 8c988f802ea2 Ports top unclean checkout: no Port dir last git commit: b304d8ab18ac Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.2 Host OSVERSION: 1500068 Jail OSVERSION: 1500068 Job Id: 16 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500068 UNAME_v=FreeBSD 15.0-RELEASE-p3 1500068 UNAME_r=15.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.2 MASTERMNT=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM=tmux-256color OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/16/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=freebsd_15_0_x64-HEAD-ALL SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/freebsd_15_0_x64-HEAD-ALL/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.2 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/chip-seq/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/chip-seq/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/chip-seq/work/.cache HOME=/wrkdirs/usr/ports/biology/chip-seq/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/chip-seq/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/chip-seq/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/chip-seq/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/chip-seq/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/chip-seq/work/.cache HOME=/wrkdirs/usr/ports/biology/chip-seq/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/chip-seq/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/chip-seq/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/chip-seq" EXAMPLESDIR="share/examples/chip-seq" DATADIR="share/chip-seq" WWWDIR="www/chip-seq" ETCDIR="etc/chip-seq" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/chip-seq DOCSDIR=/usr/local/share/doc/chip-seq EXAMPLESDIR=/usr/local/share/examples/chip-seq WWWDIR=/usr/local/www/chip-seq ETCDIR=/usr/local/etc/chip-seq --End SUB_LIST-- ---Begin make.conf--- DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### DEFAULT_VERSIONS+=pgsql=15 DEFAULT_VERSIONS+=php=82 DISABLE_LICENSES=yes SELECTED_OPTIONS+=OPENBLAS ARCHDEF=AMD64K10h64SSE3 WITH_CCACHE_BUILD=yes CCACHE_DIR=/root/.ccache #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> chip-seq-0.1.2_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.6.2.pkg [pkg.DaveG.ca] Installing pkg-2.6.2... [pkg.DaveG.ca] Extracting pkg-2.6.2: .......... done ===> chip-seq-0.1.2_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of chip-seq-0.1.2_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by chip-seq-0.1.2_1 for building =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by chip-seq-0.1.2_1 for building =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Fetching all distfiles required by chip-seq-0.1.2_1 for building ===> Extracting for chip-seq-0.1.2_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for chip-seq-0.1.2_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> chip-seq-0.1.2_1 depends on file: /usr/local/bin/python3.11 - not found ===> Installing existing package /packages/All/python311-3.11.15.pkg [pkg.DaveG.ca] Installing python311-3.11.15... [pkg.DaveG.ca] `-- Installing gettext-runtime-0.26... [pkg.DaveG.ca] | `-- Installing indexinfo-0.3.1_1... [pkg.DaveG.ca] | `-- Extracting indexinfo-0.3.1_1: . done [pkg.DaveG.ca] `-- Extracting gettext-runtime-0.26: .......... done [pkg.DaveG.ca] `-- Installing libffi-3.5.1... [pkg.DaveG.ca] `-- Extracting libffi-3.5.1: .......... done [pkg.DaveG.ca] `-- Installing mpdecimal-4.0.1... [pkg.DaveG.ca] `-- Extracting mpdecimal-4.0.1: .......... done [pkg.DaveG.ca] `-- Installing readline-8.3.3... [pkg.DaveG.ca] `-- Extracting readline-8.3.3: .......... done [pkg.DaveG.ca] Extracting python311-3.11.15: .......... done ===== Message from python311-3.11.15: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> chip-seq-0.1.2_1 depends on file: /usr/local/bin/python3.11 - found ===> Returning to build of chip-seq-0.1.2_1 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for chip-seq-0.1.2_1 =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 =========================================================================== =================================================== ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> chip-seq-0.1.2_1 depends on package: sra-tools>0 - not found ===> Installing existing package /packages/All/sra-tools-3.3.0_3.pkg [pkg.DaveG.ca] Installing sra-tools-3.3.0_3... [pkg.DaveG.ca] `-- Installing hdf5-1.12.2_2,1... [pkg.DaveG.ca] | `-- Installing gcc14-14.2.0_4... [pkg.DaveG.ca] | | `-- Installing binutils-2.44,1... [pkg.DaveG.ca] | | `-- Installing zstd-1.5.7_1... [pkg.DaveG.ca] | | `-- Extracting zstd-1.5.7_1: .......... done [pkg.DaveG.ca] | | `-- Extracting binutils-2.44,1: .......... done [pkg.DaveG.ca] | | `-- Installing gmp-6.3.0... [pkg.DaveG.ca] | | `-- Extracting gmp-6.3.0: .......... done [pkg.DaveG.ca] | | `-- Installing mpc-1.3.1_1... [pkg.DaveG.ca] | | `-- Installing mpfr-4.2.2,1... [pkg.DaveG.ca] | | `-- Extracting mpfr-4.2.2,1: .......... done [pkg.DaveG.ca] | | `-- Extracting mpc-1.3.1_1: ...... done [pkg.DaveG.ca] | `-- Extracting gcc14-14.2.0_4: .......... done [pkg.DaveG.ca] | `-- Installing libaec-1.1.5... [pkg.DaveG.ca] | `-- Extracting libaec-1.1.5: .......... done [pkg.DaveG.ca] `-- Extracting hdf5-1.12.2_2,1: .......... done [pkg.DaveG.ca] `-- Installing openjdk17-17.0.18+8.1... [pkg.DaveG.ca] | `-- Installing alsa-lib-1.2.15.3... [pkg.DaveG.ca] | `-- Extracting alsa-lib-1.2.15.3: .......... done [pkg.DaveG.ca] | `-- Installing fontconfig-2.17.1,1... [pkg.DaveG.ca] | | `-- Installing expat-2.7.4... [pkg.DaveG.ca] | | `-- Extracting expat-2.7.4: .......... done [pkg.DaveG.ca] | | `-- Installing freetype2-2.14.1... [pkg.DaveG.ca] | | `-- Installing brotli-1.2.0,1... [pkg.DaveG.ca] | | `-- Extracting brotli-1.2.0,1: .......... done [pkg.DaveG.ca] | | `-- Installing png-1.6.55... [pkg.DaveG.ca] | | `-- Extracting png-1.6.55: .......... done [pkg.DaveG.ca] | | `-- Extracting freetype2-2.14.1: .......... done [pkg.DaveG.ca] | `-- Extracting fontconfig-2.17.1,1: .......... done [pkg.DaveG.ca] | `-- Installing giflib-5.2.2... [pkg.DaveG.ca] | `-- Extracting giflib-5.2.2: .......... done [pkg.DaveG.ca] | `-- Installing harfbuzz-12.3.2... [pkg.DaveG.ca] | | `-- Installing glib-2.84.4,2... [pkg.DaveG.ca] | | `-- Installing libiconv-1.18_1... [pkg.DaveG.ca] | | `-- Extracting libiconv-1.18_1: .......... done [pkg.DaveG.ca] | | `-- Installing pcre2-10.47_1... [pkg.DaveG.ca] | | `-- Extracting pcre2-10.47_1: .......... done [pkg.DaveG.ca] | | `-- Installing py311-packaging-26.0... [pkg.DaveG.ca] | | `-- Extracting py311-packaging-26.0: .......... done [pkg.DaveG.ca] | | `-- Extracting glib-2.84.4,2: .......... done [pkg.DaveG.ca] | | `-- Installing graphite2-1.3.14... [pkg.DaveG.ca] | | `-- Extracting graphite2-1.3.14: .......... done [pkg.DaveG.ca] | `-- Extracting harfbuzz-12.3.2: .......... done [pkg.DaveG.ca] | `-- Installing javavmwrapper-2.7.10_1... [pkg.DaveG.ca] | `-- Extracting javavmwrapper-2.7.10_1: .......... done [pkg.DaveG.ca] | `-- Installing jpeg-turbo-3.1.3... [pkg.DaveG.ca] | `-- Extracting jpeg-turbo-3.1.3: .......... done [pkg.DaveG.ca] | `-- Installing lcms2-2.18... [pkg.DaveG.ca] | | `-- Installing tiff-4.7.1... [pkg.DaveG.ca] | | `-- Installing jbigkit-2.1_3... [pkg.DaveG.ca] | | `-- Extracting jbigkit-2.1_3: .......... done [pkg.DaveG.ca] | | `-- Installing lerc-4.0.0... [pkg.DaveG.ca] | | `-- Extracting lerc-4.0.0: ..... done [pkg.DaveG.ca] | | `-- Installing libdeflate-1.25... [pkg.DaveG.ca] | | `-- Extracting libdeflate-1.25: .......... done [pkg.DaveG.ca] | | `-- Extracting tiff-4.7.1: .......... done [pkg.DaveG.ca] | `-- Extracting lcms2-2.18: .......... done [pkg.DaveG.ca] | `-- Installing libX11-1.8.13,1... [pkg.DaveG.ca] | | `-- Installing libxcb-1.17.0... [pkg.DaveG.ca] | | `-- Installing libXau-1.0.12... [pkg.DaveG.ca] | | `-- Extracting libXau-1.0.12: .......... done [pkg.DaveG.ca] | | `-- Installing libXdmcp-1.1.5... [pkg.DaveG.ca] | | | `-- Installing xorgproto-2024.1... [pkg.DaveG.ca] | | | `-- Extracting xorgproto-2024.1: .......... done [pkg.DaveG.ca] | | `-- Extracting libXdmcp-1.1.5: ...... done [pkg.DaveG.ca] | | `-- Extracting libxcb-1.17.0: .......... done [pkg.DaveG.ca] | `-- Extracting libX11-1.8.13,1: .......... done [pkg.DaveG.ca] | `-- Installing libXext-1.3.6,1... [pkg.DaveG.ca] | `-- Extracting libXext-1.3.6,1: .......... done [pkg.DaveG.ca] | `-- Installing libXi-1.8.2,1... [pkg.DaveG.ca] | | `-- Installing libXfixes-6.0.1... [pkg.DaveG.ca] | | `-- Extracting libXfixes-6.0.1: ....... done [pkg.DaveG.ca] | `-- Extracting libXi-1.8.2,1: .......... done [pkg.DaveG.ca] | `-- Installing libXrandr-1.5.4... [pkg.DaveG.ca] | | `-- Installing libXrender-0.9.12... [pkg.DaveG.ca] | | `-- Extracting libXrender-0.9.12: ....... done [pkg.DaveG.ca] | `-- Extracting libXrandr-1.5.4: .......... done [pkg.DaveG.ca] | `-- Installing libXt-1.3.0,1... [pkg.DaveG.ca] | | `-- Installing libICE-1.1.2,1... [pkg.DaveG.ca] | | `-- Extracting libICE-1.1.2,1: .......... done [pkg.DaveG.ca] | | `-- Installing libSM-1.2.6,1... [pkg.DaveG.ca] | | `-- Extracting libSM-1.2.6,1: ........ done [pkg.DaveG.ca] | `-- Extracting libXt-1.3.0,1: .......... done [pkg.DaveG.ca] | `-- Installing libXtst-1.2.5... [pkg.DaveG.ca] | `-- Extracting libXtst-1.2.5: .......... done [pkg.DaveG.ca] | `-- Installing xorg-fonts-truetype-7.7_1... [pkg.DaveG.ca] | | `-- Installing dejavu-2.37_4... [pkg.DaveG.ca] | | `-- Installing mkfontscale-1.2.3... [pkg.DaveG.ca] | | | `-- Installing libfontenc-1.1.9... [pkg.DaveG.ca] | | | `-- Extracting libfontenc-1.1.9: ...... done [pkg.DaveG.ca] | | `-- Extracting mkfontscale-1.2.3: .... done [pkg.DaveG.ca] | | `-- Extracting dejavu-2.37_4: .......... done [pkg.DaveG.ca] | | `-- Installing encodings-1.1.0,1... [pkg.DaveG.ca] | | `-- Extracting encodings-1.1.0,1: .......... done [pkg.DaveG.ca] | | `-- Installing font-bh-ttf-1.0.3_5... [pkg.DaveG.ca] | | `-- Extracting font-bh-ttf-1.0.3_5: .......... done [pkg.DaveG.ca] | | `-- Installing font-misc-ethiopic-1.0.4... [pkg.DaveG.ca] | | `-- Extracting font-misc-ethiopic-1.0.4: ... done [pkg.DaveG.ca] | | `-- Installing font-misc-meltho-1.0.3_5... [pkg.DaveG.ca] | | `-- Extracting font-misc-meltho-1.0.3_5: .......... done [pkg.DaveG.ca] `-- Extracting openjdk17-17.0.18+8.1: .......... done [pkg.DaveG.ca] Extracting sra-tools-3.3.0_3: .......... done ==> Running trigger: fontconfig.ucl Running fc-cache to build fontconfig cache... ==> Running trigger: gio-modules.ucl Generating GIO modules cache ==> Running trigger: glib-schemas.ucl Compiling glib schemas No schema files found: doing nothing. ===== Message from gcc14-14.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from freetype2-2.14.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). ===== Message from openjdk17-17.0.18+8.1: -- This OpenJDK implementation may require procfs(5) mounted on /proc for some applications. If you have not done it yet, please do the following: mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: proc /proc procfs rw 0 0 ===> chip-seq-0.1.2_1 depends on package: sra-tools>0 - found ===> Returning to build of chip-seq-0.1.2_1 ===> chip-seq-0.1.2_1 depends on package: fastq-trim>0 - not found ===> Installing existing package /packages/All/fastq-trim-0.1.4.pkg [pkg.DaveG.ca] Installing fastq-trim-0.1.4... [pkg.DaveG.ca] `-- Installing biolibc-0.2.7... [pkg.DaveG.ca] | `-- Installing libxtend-0.2.1.10... [pkg.DaveG.ca] | `-- Extracting libxtend-0.2.1.10: .......... done [pkg.DaveG.ca] `-- Extracting biolibc-0.2.7: .......... done [pkg.DaveG.ca] Extracting fastq-trim-0.1.4: .......... done ===> chip-seq-0.1.2_1 depends on package: fastq-trim>0 - found ===> Returning to build of chip-seq-0.1.2_1 ===> chip-seq-0.1.2_1 depends on package: fastqc>0 - not found ===> Installing existing package /packages/All/fastqc-0.12.1_1.pkg [pkg.DaveG.ca] Installing fastqc-0.12.1_1... [pkg.DaveG.ca] `-- Installing openjdk21-21.0.10+7.1_1... [pkg.DaveG.ca] `-- Extracting openjdk21-21.0.10+7.1_1: .......... done [pkg.DaveG.ca] `-- Installing perl5-5.42.1... [pkg.DaveG.ca] `-- Extracting perl5-5.42.1: .......... done [pkg.DaveG.ca] Extracting fastqc-0.12.1_1: .......... done ===== Message from openjdk21-21.0.10+7.1_1: -- This OpenJDK implementation may require procfs(5) mounted on /proc for some applications. If you have not done it yet, please do the following: mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: proc /proc procfs rw 0 0 ===> chip-seq-0.1.2_1 depends on package: fastqc>0 - found ===> Returning to build of chip-seq-0.1.2_1 ===> chip-seq-0.1.2_1 depends on package: py311-multiqc>0 - not found ===> Installing existing package /packages/All/py311-multiqc-1.25.2_3.pkg [pkg.DaveG.ca] Installing py311-multiqc-1.25.2_3... [pkg.DaveG.ca] `-- Installing py311-Jinja2-3.1.6... [pkg.DaveG.ca] | `-- Installing py311-Babel-2.18.0... [pkg.DaveG.ca] | `-- Extracting py311-Babel-2.18.0: .......... done [pkg.DaveG.ca] | `-- Installing py311-markupsafe-3.0.3... [pkg.DaveG.ca] | `-- Extracting py311-markupsafe-3.0.3: .......... done [pkg.DaveG.ca] `-- Extracting py311-Jinja2-3.1.6: .......... done [pkg.DaveG.ca] `-- Installing py311-coloredlogs-15.0.1_1... [pkg.DaveG.ca] | `-- Installing py311-humanfriendly-10.0_1... [pkg.DaveG.ca] | `-- Extracting py311-humanfriendly-10.0_1: .......... done [pkg.DaveG.ca] `-- Extracting py311-coloredlogs-15.0.1_1: .......... done [pkg.DaveG.ca] `-- Installing py311-humanize-4.14.0... [pkg.DaveG.ca] `-- Extracting py311-humanize-4.14.0: .......... done [pkg.DaveG.ca] `-- Installing py311-importlib-metadata-8.7.0... [pkg.DaveG.ca] | `-- Installing py311-zipp-3.21.0... [pkg.DaveG.ca] | `-- Extracting py311-zipp-3.21.0: .......... done [pkg.DaveG.ca] `-- Extracting py311-importlib-metadata-8.7.0: .......... done [pkg.DaveG.ca] `-- Installing py311-markdown-3.10.2... [pkg.DaveG.ca] `-- Extracting py311-markdown-3.10.2: .......... done [pkg.DaveG.ca] `-- Installing py311-natsort-8.4.0_1... [pkg.DaveG.ca] `-- Extracting py311-natsort-8.4.0_1: .......... done [pkg.DaveG.ca] `-- Installing py311-numpy-1.26.4_12,1... [pkg.DaveG.ca] | `-- Installing openblas-0.3.30,2... [pkg.DaveG.ca] | `-- Extracting openblas-0.3.30,2: .......... done [pkg.DaveG.ca] | `-- Installing suitesparse-umfpack-6.3.7... [pkg.DaveG.ca] | | `-- Installing suitesparse-amd-3.3.4... [pkg.DaveG.ca] | | `-- Installing suitesparse-config-7.12.2... [pkg.DaveG.ca] | | `-- Extracting suitesparse-config-7.12.2: .......... done [pkg.DaveG.ca] | | `-- Extracting suitesparse-amd-3.3.4: .......... done [pkg.DaveG.ca] | | `-- Installing suitesparse-camd-3.3.5... [pkg.DaveG.ca] | | `-- Extracting suitesparse-camd-3.3.5: .......... done [pkg.DaveG.ca] | | `-- Installing suitesparse-ccolamd-3.3.5... [pkg.DaveG.ca] | | `-- Extracting suitesparse-ccolamd-3.3.5: .......... done [pkg.DaveG.ca] | | `-- Installing suitesparse-cholmod-5.3.4... [pkg.DaveG.ca] | | `-- Installing suitesparse-colamd-3.3.5... [pkg.DaveG.ca] | | `-- Extracting suitesparse-colamd-3.3.5: .......... done [pkg.DaveG.ca] | | `-- Extracting suitesparse-cholmod-5.3.4: .......... done [pkg.DaveG.ca] | `-- Extracting suitesparse-umfpack-6.3.7: .......... done [pkg.DaveG.ca] `-- Extracting py311-numpy-1.26.4_12,1: .......... done [pkg.DaveG.ca] `-- Installing py311-orca-1.8_2... [pkg.DaveG.ca] | `-- Installing py311-pandas-2.3.3,1... [pkg.DaveG.ca] | | `-- Installing py311-bottleneck-1.6.0... [pkg.DaveG.ca] | | `-- Extracting py311-bottleneck-1.6.0: .......... done [pkg.DaveG.ca] | | `-- Installing py311-numexpr-2.14.1... [pkg.DaveG.ca] | | `-- Extracting py311-numexpr-2.14.1: .......... done [pkg.DaveG.ca] | | `-- Installing py311-python-dateutil-2.9.0... [pkg.DaveG.ca] | | `-- Installing py311-six-1.17.0... [pkg.DaveG.ca] | | `-- Extracting py311-six-1.17.0: ........ done [pkg.DaveG.ca] | | `-- Extracting py311-python-dateutil-2.9.0: .......... done [pkg.DaveG.ca] | | `-- Installing py311-pytz-2025.2_1,1... [pkg.DaveG.ca] | | `-- Extracting py311-pytz-2025.2_1,1: .......... done [pkg.DaveG.ca] | | `-- Installing py311-sqlite3-3.11.15_10... [pkg.DaveG.ca] | | `-- Installing sqlite3-3.50.4_2,1... [pkg.DaveG.ca] | | | `-- Installing libedit-3.1.20251016_1,1... [pkg.DaveG.ca] | | | `-- Extracting libedit-3.1.20251016_1,1: .......... done [pkg.DaveG.ca] | | `-- Extracting sqlite3-3.50.4_2,1: .......... done [pkg.DaveG.ca] | | `-- Extracting py311-sqlite3-3.11.15_10: ...... done [pkg.DaveG.ca] | | `-- Installing py311-tzdata-2025.3... [pkg.DaveG.ca] | | `-- Extracting py311-tzdata-2025.3: .......... done [pkg.DaveG.ca] | `-- Extracting py311-pandas-2.3.3,1: .......... done [pkg.DaveG.ca] | `-- Installing py311-tables-3.10.2_3... [pkg.DaveG.ca] | | `-- Installing c-blosc2-2.23.0... [pkg.DaveG.ca] | | `-- Installing liblz4-1.10.0_2,1... 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[pkg.DaveG.ca] | `-- Extracting py311-toolz-1.0.0_1: .......... done [pkg.DaveG.ca] `-- Extracting py311-orca-1.8_2: .......... done [pkg.DaveG.ca] `-- Installing py311-pillow-11.3.0_2... [pkg.DaveG.ca] | `-- Installing libavif-1.3.0_3... [pkg.DaveG.ca] | | `-- Installing aom-3.13.1... [pkg.DaveG.ca] | | `-- Installing vmaf-3.0.0... [pkg.DaveG.ca] | | `-- Extracting vmaf-3.0.0: .......... done [pkg.DaveG.ca] | | `-- Extracting aom-3.13.1: .......... done [pkg.DaveG.ca] | | `-- Installing dav1d-1.5.3_1... [pkg.DaveG.ca] | | `-- Extracting dav1d-1.5.3_1: .......... done [pkg.DaveG.ca] | | `-- Installing gdk-pixbuf2-2.44.1... [pkg.DaveG.ca] | | `-- Installing libxml2-2.15.2... [pkg.DaveG.ca] | | `-- Extracting libxml2-2.15.2: .......... done [pkg.DaveG.ca] | | `-- Installing shared-mime-info-2.4_2... [pkg.DaveG.ca] | | `-- Extracting shared-mime-info-2.4_2: ......... done [pkg.DaveG.ca] | | `-- Extracting gdk-pixbuf2-2.44.1: .......... done [pkg.DaveG.ca] | | `-- Installing libyuv-0.0.1903... [pkg.DaveG.ca] | | `-- Extracting libyuv-0.0.1903: .......... done [pkg.DaveG.ca] | `-- Extracting libavif-1.3.0_3: .......... done [pkg.DaveG.ca] | `-- Installing libimagequant-4.4.1_2... [pkg.DaveG.ca] | `-- Extracting libimagequant-4.4.1_2: ...... done [pkg.DaveG.ca] | `-- Installing libraqm-0.10.3... [pkg.DaveG.ca] | | `-- Installing fribidi-1.0.16... [pkg.DaveG.ca] | | `-- Extracting fribidi-1.0.16: .......... done [pkg.DaveG.ca] | `-- Extracting libraqm-0.10.3: .......... done [pkg.DaveG.ca] | `-- Installing openjpeg-2.5.4_2... [pkg.DaveG.ca] | `-- Extracting openjpeg-2.5.4_2: .......... done [pkg.DaveG.ca] | `-- Installing py311-olefile-0.46_1... [pkg.DaveG.ca] | `-- Extracting py311-olefile-0.46_1: .......... done [pkg.DaveG.ca] | `-- Installing py311-tkinter-3.11.15_11... [pkg.DaveG.ca] | | `-- Installing tcl86-8.6.17... [pkg.DaveG.ca] | | `-- Extracting tcl86-8.6.17: .......... done [pkg.DaveG.ca] | | `-- Installing tk86-8.6.17... [pkg.DaveG.ca] | | `-- Installing libXScrnSaver-1.2.4_1... [pkg.DaveG.ca] | | `-- Extracting libXScrnSaver-1.2.4_1: .......... done [pkg.DaveG.ca] | | `-- Installing libXft-2.3.8... [pkg.DaveG.ca] | | `-- Extracting libXft-2.3.8: .......... done [pkg.DaveG.ca] | | `-- Extracting tk86-8.6.17: .......... done [pkg.DaveG.ca] | `-- Extracting py311-tkinter-3.11.15_11: ...... done [pkg.DaveG.ca] | `-- Installing webp-1.6.0... [pkg.DaveG.ca] | `-- Extracting webp-1.6.0: .......... done [pkg.DaveG.ca] `-- Extracting py311-pillow-11.3.0_2: .......... done [pkg.DaveG.ca] `-- Installing py311-plotly-5.24.1_1... [pkg.DaveG.ca] | `-- Installing py311-tenacity-9.0.0... [pkg.DaveG.ca] | `-- Extracting py311-tenacity-9.0.0: .......... done [pkg.DaveG.ca] `-- Extracting py311-plotly-5.24.1_1: .......... done [pkg.DaveG.ca] `-- Installing py311-psutil-7.2.2... [pkg.DaveG.ca] `-- Extracting py311-psutil-7.2.2: .......... done [pkg.DaveG.ca] `-- Installing py311-pydantic2-2.12.5... [pkg.DaveG.ca] | `-- Installing py311-annotated-types-0.7.0... [pkg.DaveG.ca] | `-- Extracting py311-annotated-types-0.7.0: .......... done [pkg.DaveG.ca] | `-- Installing py311-pydantic-core-2.41.5_3... [pkg.DaveG.ca] | | `-- Installing py311-typing-extensions-4.15.0... [pkg.DaveG.ca] | | `-- Extracting py311-typing-extensions-4.15.0: ....... done [pkg.DaveG.ca] | `-- Extracting py311-pydantic-core-2.41.5_3: .......... done [pkg.DaveG.ca] | `-- Installing py311-typing-inspection-0.4.2... [pkg.DaveG.ca] | `-- Extracting py311-typing-inspection-0.4.2: .......... done [pkg.DaveG.ca] `-- Extracting py311-pydantic2-2.12.5: .......... done [pkg.DaveG.ca] `-- Installing py311-pyyaml-6.0.3... [pkg.DaveG.ca] | `-- Installing libyaml-0.2.5... [pkg.DaveG.ca] | `-- Extracting libyaml-0.2.5: ...... done [pkg.DaveG.ca] `-- Extracting py311-pyyaml-6.0.3: .......... done [pkg.DaveG.ca] `-- Installing py311-requests-2.32.5... [pkg.DaveG.ca] | `-- Installing py311-certifi-2026.1.4... [pkg.DaveG.ca] | `-- Extracting py311-certifi-2026.1.4: .......... done [pkg.DaveG.ca] | `-- Installing py311-charset-normalizer-3.4.4... [pkg.DaveG.ca] | `-- Extracting py311-charset-normalizer-3.4.4: .......... done [pkg.DaveG.ca] | `-- Installing py311-idna-3.11... [pkg.DaveG.ca] | `-- Extracting py311-idna-3.11: .......... done [pkg.DaveG.ca] | `-- Installing py311-pysocks-1.7.1_1... [pkg.DaveG.ca] | `-- Extracting py311-pysocks-1.7.1_1: .......... done [pkg.DaveG.ca] | `-- Installing py311-urllib3-2.6.3,1... [pkg.DaveG.ca] | `-- Extracting py311-urllib3-2.6.3,1: .......... done [pkg.DaveG.ca] `-- Extracting py311-requests-2.32.5: .......... done [pkg.DaveG.ca] `-- Installing py311-rich-14.3.3... [pkg.DaveG.ca] | `-- Installing py311-markdown-it-py-4.0.0... [pkg.DaveG.ca] | | `-- Installing py311-mdurl-0.1.2_2... [pkg.DaveG.ca] | | `-- Extracting py311-mdurl-0.1.2_2: .......... done [pkg.DaveG.ca] | `-- Extracting py311-markdown-it-py-4.0.0: .......... done [pkg.DaveG.ca] | `-- Installing py311-pygments-2.19.2... [pkg.DaveG.ca] | `-- Extracting py311-pygments-2.19.2: .......... done [pkg.DaveG.ca] `-- Extracting py311-rich-14.3.3: .......... done [pkg.DaveG.ca] `-- Installing py311-rich-click-1.9.7... [pkg.DaveG.ca] | `-- Installing py311-click-8.1.7_1... [pkg.DaveG.ca] | `-- Extracting py311-click-8.1.7_1: .......... done [pkg.DaveG.ca] | `-- Installing py311-colorama-0.4.6... [pkg.DaveG.ca] | `-- Extracting py311-colorama-0.4.6: .......... done [pkg.DaveG.ca] `-- Extracting py311-rich-click-1.9.7: .......... done [pkg.DaveG.ca] `-- Installing py311-spectra-0.0.11_3... [pkg.DaveG.ca] | `-- Installing py311-colormath-3.0.0_4... [pkg.DaveG.ca] | | `-- Installing py311-networkx-3.5_3,2... [pkg.DaveG.ca] | | `-- Installing py311-gdal-3.11.5... [pkg.DaveG.ca] | | | `-- Installing gdal-3.11.5_2... [pkg.DaveG.ca] | | | `-- Installing curl-8.17.0... [pkg.DaveG.ca] | | | | `-- Installing libidn2-2.3.8... [pkg.DaveG.ca] | | | | `-- Installing libunistring-1.4.2... [pkg.DaveG.ca] | | | | `-- Extracting libunistring-1.4.2: .......... done [pkg.DaveG.ca] | | | | `-- Extracting libidn2-2.3.8: .......... done [pkg.DaveG.ca] | | | | `-- Installing libnghttp2-1.68.0... [pkg.DaveG.ca] | | | | `-- Extracting libnghttp2-1.68.0: ....... done [pkg.DaveG.ca] | | | | `-- Installing libpsl-0.21.5_2... [pkg.DaveG.ca] | | | | `-- Extracting libpsl-0.21.5_2: ........ done [pkg.DaveG.ca] | | | | `-- Installing libssh2-1.11.1,3... [pkg.DaveG.ca] | | | | `-- Extracting libssh2-1.11.1,3: .......... done [pkg.DaveG.ca] | | | `-- Extracting curl-8.17.0: .......... done [pkg.DaveG.ca] | | | `-- Installing freexl-2.0.0... [pkg.DaveG.ca] | | | | `-- Installing minizip-1.3.1... [pkg.DaveG.ca] | | | | `-- Extracting minizip-1.3.1: .......... done [pkg.DaveG.ca] | | | `-- Extracting freexl-2.0.0: ...... done [pkg.DaveG.ca] | | | `-- Installing geos-3.14.1... [pkg.DaveG.ca] | | | `-- Extracting geos-3.14.1: .......... done [pkg.DaveG.ca] | | | `-- Installing json-c-0.18... [pkg.DaveG.ca] | | | `-- Extracting json-c-0.18: .......... done [pkg.DaveG.ca] | | | `-- Installing libgeotiff-1.7.4_1... [pkg.DaveG.ca] | | | | `-- Installing proj-9.7.1_1,1... 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[pkg.DaveG.ca] | | | | `-- Installing gpgme-2.0.1... [pkg.DaveG.ca] | | | | `-- Installing gnupg-2.4.9... [pkg.DaveG.ca] | | | | | `-- Installing gnutls-3.8.12... [pkg.DaveG.ca] | | | | | `-- Installing libtasn1-4.21.0... [pkg.DaveG.ca] | | | | | `-- Extracting libtasn1-4.21.0: .......... done [pkg.DaveG.ca] | | | | | `-- Installing nettle-3.10.2... [pkg.DaveG.ca] | | | | | `-- Extracting nettle-3.10.2: .......... done [pkg.DaveG.ca] | | | | | `-- Installing p11-kit-0.26.2... [pkg.DaveG.ca] | | | | | `-- Extracting p11-kit-0.26.2: .......... done [pkg.DaveG.ca] | | | | | `-- Extracting gnutls-3.8.12: .......... done [pkg.DaveG.ca] | | | | | `-- Installing libassuan-3.0.2... [pkg.DaveG.ca] | | | | | `-- Installing libgpg-error-1.59... [pkg.DaveG.ca] | | | | | `-- Extracting libgpg-error-1.59: .......... done [pkg.DaveG.ca] | | | | | `-- Extracting libassuan-3.0.2: ........ done [pkg.DaveG.ca] | | | | | `-- Installing libgcrypt-1.12.0_1... 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[pkg.DaveG.ca] | | | | `-- Extracting librttopo-1.1.0: ....... done [pkg.DaveG.ca] | | | `-- Extracting spatialite-5.1.0_5: .......... done [pkg.DaveG.ca] | | | `-- Installing xerces-c3-3.3.0... [pkg.DaveG.ca] | | | `-- Extracting xerces-c3-3.3.0: .......... done [pkg.DaveG.ca] | | | `-- Extracting gdal-3.11.5_2: .......... done [pkg.DaveG.ca] | | `-- Extracting py311-gdal-3.11.5: .......... done [pkg.DaveG.ca] | | `-- Installing py311-lxml-6.0.2... [pkg.DaveG.ca] | | | `-- Installing libxslt-1.1.45... [pkg.DaveG.ca] | | | `-- Extracting libxslt-1.1.45: .......... done [pkg.DaveG.ca] | | `-- Extracting py311-lxml-6.0.2: .......... done [pkg.DaveG.ca] | | `-- Installing py311-matplotlib-3.10.8... [pkg.DaveG.ca] | | | `-- Installing py311-contourpy-1.3.3... [pkg.DaveG.ca] | | | `-- Extracting py311-contourpy-1.3.3: .......... done [pkg.DaveG.ca] | | | `-- Installing py311-cycler-0.12.1... 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[pkg.DaveG.ca] `-- Extracting py311-typeguard-4.5.0: .......... done [pkg.DaveG.ca] Extracting py311-multiqc-1.25.2_3: .......... done ==> Running trigger: gdk-pixbuf-query-loaders.ucl Generating gdk-pixbuf modules cache ==> Running trigger: shared-mime-info.ucl Building the Shared MIME-Info database cache ===== Message from py311-pandas-2.3.3,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. ===== Message from libraqm-0.10.3: -- ===> NOTICE: The libraqm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing ===== Message from py311-urllib3-2.6.3,1: -- Since version 1.25 HTTPS connections are now verified by default which is done via "cert_reqs = 'CERT_REQUIRED'". While certificate verification can be disabled via "cert_reqs = 'CERT_NONE'", it's highly recommended to leave it on. Various consumers of net/py-urllib3 already have implemented routines that either explicitly enable or disable HTTPS certificate verification (e.g. via configuration settings, CLI arguments, etc.). Yet it may happen that there are still some consumers which don't explicitly enable/disable certificate verification for HTTPS connections which could then lead to errors (as is often the case with self-signed certificates). In case of an error one should try first to temporarily disable certificate verification of the problematic urllib3 consumer to see if that approach will remedy the issue. ===== Message from boost-libs-1.89.0_2: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===== Message from postgresql15-client-15.17: -- The PostgreSQL port has a collection of "side orders": postgresql-docs For all of the html documentation p5-Pg A perl5 API for client access to PostgreSQL databases. postgresql-tcltk If you want tcl/tk client support. postgresql-jdbc For Java JDBC support. postgresql-odbc For client access from unix applications using ODBC as access method. Not needed to access unix PostgreSQL servers from Win32 using ODBC. See below. ruby-postgres, py-psycopg For client access to PostgreSQL databases using the ruby & python languages. postgresql-plperl, postgresql-pltcl & postgresql-plruby For using perl5, tcl & ruby as procedural languages. postgresql-contrib Lots of contributed utilities, postgresql functions and datatypes. There you find pg_standby, pgcrypto and many other cool things. etc... ===> chip-seq-0.1.2_1 depends on package: py311-multiqc>0 - found ===> Returning to build of chip-seq-0.1.2_1 ===> chip-seq-0.1.2_1 depends on package: biolibc-tools>0 - not found ===> Installing existing package /packages/All/biolibc-tools-0.1.5.pkg [pkg.DaveG.ca] Installing biolibc-tools-0.1.5... [pkg.DaveG.ca] `-- Installing xxhash-0.8.3... [pkg.DaveG.ca] `-- Extracting xxhash-0.8.3: .......... done [pkg.DaveG.ca] Extracting biolibc-tools-0.1.5: .......... done ===> chip-seq-0.1.2_1 depends on package: biolibc-tools>0 - found ===> Returning to build of chip-seq-0.1.2_1 ===> chip-seq-0.1.2_1 depends on package: bwa>0 - not found ===> Installing existing package /packages/All/bwa-0.7.19.pkg [pkg.DaveG.ca] Installing bwa-0.7.19... [pkg.DaveG.ca] Extracting bwa-0.7.19: .... done ===> chip-seq-0.1.2_1 depends on package: bwa>0 - found ===> Returning to build of chip-seq-0.1.2_1 ===> chip-seq-0.1.2_1 depends on package: bowtie2>0 - not found ===> Installing existing package /packages/All/bowtie2-2.5.5.pkg [pkg.DaveG.ca] Installing bowtie2-2.5.5... [pkg.DaveG.ca] `-- Installing bash-5.3.9... [pkg.DaveG.ca] `-- Extracting bash-5.3.9: .......... done [pkg.DaveG.ca] Extracting bowtie2-2.5.5: .......... done ===== Message from bash-5.3.9: -- bash requires fdescfs(5) mounted on /dev/fd If you have not done it yet, please do the following: mount -t fdescfs fdescfs /dev/fd To make it permanent, you need the following lines in /etc/fstab: fdescfs /dev/fd fdescfs rw,late 0 0 ===> chip-seq-0.1.2_1 depends on package: bowtie2>0 - found ===> Returning to build of chip-seq-0.1.2_1 ===> chip-seq-0.1.2_1 depends on package: samtools>0 - not found ===> Installing existing package /packages/All/samtools-1.22.pkg [pkg.DaveG.ca] Installing samtools-1.22... [pkg.DaveG.ca] `-- Installing htslib-1.22... [pkg.DaveG.ca] `-- Extracting htslib-1.22: .......... done [pkg.DaveG.ca] Extracting samtools-1.22: .......... done ===> chip-seq-0.1.2_1 depends on package: samtools>0 - found ===> Returning to build of chip-seq-0.1.2_1 ===> chip-seq-0.1.2_1 depends on package: py311-macs2>0 - not found ===> Installing existing package /packages/All/py311-macs2-2.2.9.1_1.pkg [pkg.DaveG.ca] Installing py311-macs2-2.2.9.1_1... [pkg.DaveG.ca] `-- Installing py311-cykhash-2.0.1_1... [pkg.DaveG.ca] `-- Extracting py311-cykhash-2.0.1_1: .......... done [pkg.DaveG.ca] Extracting py311-macs2-2.2.9.1_1: .......... done ===> chip-seq-0.1.2_1 depends on package: py311-macs2>0 - found ===> Returning to build of chip-seq-0.1.2_1 ===> chip-seq-0.1.2_1 depends on package: fasda>0 - not found ===> Installing existing package /packages/All/fasda-0.2.0.1.pkg [pkg.DaveG.ca] Installing fasda-0.2.0.1... [pkg.DaveG.ca] `-- Installing stringtie-2.1.1... [pkg.DaveG.ca] `-- Extracting stringtie-2.1.1: . done [pkg.DaveG.ca] Extracting fasda-0.2.0.1: .......... done ===> chip-seq-0.1.2_1 depends on package: fasda>0 - found ===> Returning to build of chip-seq-0.1.2_1 ===> chip-seq-0.1.2_1 depends on package: peak-classifier>0 - not found ===> Installing existing package /packages/All/peak-classifier-0.1.4.13_2.pkg [pkg.DaveG.ca] Installing peak-classifier-0.1.4.13_2... [pkg.DaveG.ca] `-- Installing bedtools-2.31.1... [pkg.DaveG.ca] `-- Extracting bedtools-2.31.1: .......... done [pkg.DaveG.ca] Extracting peak-classifier-0.1.4.13_2: ......... done ===> chip-seq-0.1.2_1 depends on package: peak-classifier>0 - found ===> Returning to build of chip-seq-0.1.2_1 ===> chip-seq-0.1.2_1 depends on package: webbrowser>0 - not found ===> Installing existing package /packages/All/webbrowser-0.4.0.pkg [pkg.DaveG.ca] Installing webbrowser-0.4.0... [pkg.DaveG.ca] Extracting webbrowser-0.4.0: .. done ===> chip-seq-0.1.2_1 depends on package: webbrowser>0 - found ===> Returning to build of chip-seq-0.1.2_1 ===> chip-seq-0.1.2_1 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =================================================== ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Staging for chip-seq-0.1.2_1 ===> Generating temporary packing list ====> Compressing man pages (compress-man) =========================================================================== =================================================== ===== env: 'PKG_NOTES=build_timestamp ports_top_git_hash ports_top_checkout_unclean port_git_hash port_checkout_unclean built_by' 'PKG_NOTE_build_timestamp=2026-03-19T07:17:18+0000' 'PKG_NOTE_ports_top_git_hash=8c988f802ea2' 'PKG_NOTE_ports_top_checkout_unclean=no' 'PKG_NOTE_port_git_hash=b304d8ab18ac' 'PKG_NOTE_port_checkout_unclean=no' 'PKG_NOTE_built_by=poudriere-git-3.4.2' NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building packages for chip-seq-0.1.2_1 ===> Building chip-seq-0.1.2_1 =========================================================================== =>> Cleaning up wrkdir ===> Cleaning for chip-seq-0.1.2_1 build of biology/chip-seq | chip-seq-0.1.2_1 ended at Thu Mar 19 03:17:50 EDT 2026 build time: 00:00:32